TB-Profiler result

Run: ERR4821272
Summary

Run ID: ERR4821272

Sample name:

Date: 01-04-2023 17:09:42

Number of reads: 1733787

Percentage reads mapped: 74.74

Strain: lineage4.1.2.1

Drug-resistance: RR-TB

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Drug resistance: This table reports drug-resistance associated mutations found in known resistance genes
Drug Resistance Supporting mutations
Lineage Table: The lineage is inferred by analysing lineage specific SNPs
Lineage Family Main Spoligotype RDs Frequency
lineage4 Euro-American LAM;T;S;X;H None 1.0
lineage4.1 Euro-American T;X;H None 1.0
lineage4.1.2 Euro-American T;H None 1.0
lineage4.1.2.1 Euro-American (Haarlem) T1;H1 RD182 1.0
Drug resistance-Associated Mutations: This table reports mutations found in candidate resistance genes which have been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction Drugs
rpoB 761127 p.Ser441Ala missense_variant 0.19 rifampicin
rrs 1472644 n.799C>T non_coding_transcript_exon_variant 0.75 streptomycin
rrs 1473247 n.1402C>A non_coding_transcript_exon_variant 0.48 kanamycin, capreomycin, aminoglycosides, amikacin
rrs 1473329 n.1484G>T non_coding_transcript_exon_variant 0.22 kanamycin, capreomycin, aminoglycosides, amikacin
Non-Associated Mutations: This table reports mutations found in candidate resistance genes which have not been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction
gyrA 7362 p.Glu21Gln missense_variant 1.0
gyrA 7585 p.Ser95Thr missense_variant 1.0
gyrA 9304 p.Gly668Asp missense_variant 1.0
fgd1 491591 p.Lys270Met missense_variant 1.0
mshA 575679 p.Asn111Ser missense_variant 1.0
rpoB 760115 c.309C>T synonymous_variant 1.0
rpoB 761015 c.1209G>C synonymous_variant 0.15
rpoB 761027 c.1221A>G synonymous_variant 0.18
rpoB 761037 c.1231_1233delTTGinsCTC synonymous_variant 0.17
rpoB 761051 c.1245G>T synonymous_variant 0.16
rpoB 761054 c.1248G>C synonymous_variant 0.17
rpoB 761057 c.1251G>C synonymous_variant 0.17
rpoB 761060 c.1254C>G synonymous_variant 0.17
rpoB 761084 c.1278C>A synonymous_variant 0.15
rpoB 761088 c.1282_1284delAGCinsTCG synonymous_variant 0.15
rpoB 761097 c.1291_1293delAGCinsTCG synonymous_variant 0.15
rpoB 761102 c.1296A>G synonymous_variant 0.16
rpoB 761111 c.1305C>T synonymous_variant 0.17
rpoB 761126 c.1320G>C synonymous_variant 0.19
rpoB 761132 c.1326G>T synonymous_variant 0.2
rpoB 761133 c.1327T>C synonymous_variant 0.2
rpoB 761147 c.1341C>T synonymous_variant 0.18
rpoB 761150 c.1344A>C synonymous_variant 0.17
rpoB 761156 c.1350G>T synonymous_variant 0.19
rpoB 761165 c.1359G>C synonymous_variant 0.11
rpoB 761207 c.1401C>T synonymous_variant 0.14
rpoB 761213 c.1407G>C synonymous_variant 0.14
rpoB 761234 c.1428G>C synonymous_variant 0.14
rpoB 761249 c.1443A>G synonymous_variant 0.14
rpoB 761255 c.1449T>C synonymous_variant 0.11
rpoB 761973 p.His723Tyr missense_variant 0.12
rpoB 761980 p.Tyr725Phe missense_variant 0.12
rpoB 761987 c.2181C>T synonymous_variant 0.13
rpoB 761999 c.2193G>C synonymous_variant 0.12
rpoB 762002 c.2196C>G synonymous_variant 0.12
rpoB 762003 p.Asn733Gln missense_variant 0.12
rpoB 762015 p.Glu737Gln missense_variant 0.12
rpoB 762020 p.Glu738Asp missense_variant 0.12
rpoB 762026 c.2220G>C synonymous_variant 0.11
rpoB 762030 p.Thr742Ser missense_variant 0.12
rpoB 762053 c.2247T>C synonymous_variant 0.12
rpoB 762057 p.Ile751Val missense_variant 0.14
rpoB 762062 c.2256T>C synonymous_variant 0.14
rpoB 762065 c.2259T>C synonymous_variant 0.14
rpoB 762080 c.2274G>C synonymous_variant 0.15
rpoB 762086 c.2280G>C synonymous_variant 0.18
rpoB 762101 c.2295C>G synonymous_variant 0.2
rpoB 762878 p.Ile1024Met missense_variant 0.11
rpoB 762879 p.Met1025Leu missense_variant 0.11
rpoC 762887 c.-483G>C upstream_gene_variant 0.12
rpoC 762896 c.-474G>C upstream_gene_variant 0.12
rpoC 762899 c.-471G>C upstream_gene_variant 0.12
rpoC 762917 c.-453C>G upstream_gene_variant 0.14
rpoC 762923 c.-447C>G upstream_gene_variant 0.15
rpoC 762929 c.-441G>T upstream_gene_variant 0.17
rpoC 762980 c.-390T>C upstream_gene_variant 0.11
rpoC 762989 c.-381G>C upstream_gene_variant 0.11
rpoC 763483 c.114G>C synonymous_variant 0.17
rpoC 763486 c.117T>G synonymous_variant 0.17
rpoC 763504 c.135C>A synonymous_variant 0.2
rpoC 763507 c.138G>C synonymous_variant 0.2
rpoC 763528 c.159G>C synonymous_variant 0.18
rpoC 763531 c.162G>C synonymous_variant 0.19
rpoC 763534 c.165T>C synonymous_variant 0.18
rpoC 763537 c.168C>T synonymous_variant 0.18
rpoC 763546 c.177A>G synonymous_variant 0.17
rpoC 763550 p.Tyr61Ala missense_variant 0.16
rpoC 763570 c.201G>C synonymous_variant 0.15
rpoC 763585 c.216C>G synonymous_variant 0.16
rpoC 764491 c.1122G>C synonymous_variant 0.16
rpoC 764498 p.Ser377Ala missense_variant 0.15
rpoC 764503 c.1134G>C synonymous_variant 0.14
rpoC 764507 p.Ala380Ser missense_variant 0.15
rpoC 764521 c.1152T>C synonymous_variant 0.15
rpoC 764524 c.1155C>T synonymous_variant 0.15
rpoC 764527 c.1158C>T synonymous_variant 0.15
rpoC 764533 c.1164C>T synonymous_variant 0.15
rpoC 764536 c.1167G>T synonymous_variant 0.14
rpoC 764542 c.1173C>G synonymous_variant 0.12
rpoC 764548 c.1179G>A synonymous_variant 0.13
rpoC 764560 c.1191T>C synonymous_variant 0.13
rpoC 764575 c.1206T>G synonymous_variant 0.12
rpoC 764578 c.1209C>G synonymous_variant 0.12
rpoC 764581 c.1212T>C synonymous_variant 0.12
rpoC 764582 p.Leu405Met missense_variant 0.12
rpoC 764611 c.1242G>C synonymous_variant 0.14
rpoC 764632 c.1263T>C synonymous_variant 0.13
rpoC 764650 c.1281G>T synonymous_variant 0.12
rpoC 764662 c.1293G>C synonymous_variant 0.19
rpoC 764668 c.1299C>T synonymous_variant 0.19
rpoC 764679 p.Lys437Ser missense_variant 0.18
rpoC 764683 c.1314G>C synonymous_variant 0.19
rpoC 764690 p.Cys441Ala missense_variant 0.2
rpoC 764701 c.1332C>G synonymous_variant 0.2
rpoC 764705 p.Leu446Thr missense_variant 0.21
rpoC 764716 c.1347G>C synonymous_variant 0.23
rpoC 764737 c.1368G>C synonymous_variant 0.22
rpoC 764746 c.1377G>C synonymous_variant 0.19
rpoC 764752 c.1383G>C synonymous_variant 0.18
rpoC 764755 c.1386C>T synonymous_variant 0.17
rpoC 764764 c.1395T>C synonymous_variant 0.16
rpoC 764780 c.1411_1413delAGCinsTCG synonymous_variant 0.11
rpoC 765150 p.Gly594Glu missense_variant 1.0
mmpL5 775639 p.Ile948Val missense_variant 1.0
rpsL 781395 c.-165T>C upstream_gene_variant 1.0
rrs 1471659 n.-187C>T upstream_gene_variant 1.0
rrs 1472092 n.247C>T non_coding_transcript_exon_variant 0.12
rrs 1472102 n.257G>A non_coding_transcript_exon_variant 0.14
rrs 1472106 n.261G>A non_coding_transcript_exon_variant 0.14
rrs 1472108 n.263C>T non_coding_transcript_exon_variant 0.14
rrs 1472112 n.267C>T non_coding_transcript_exon_variant 0.15
rrs 1472113 n.268T>C non_coding_transcript_exon_variant 0.16
rrs 1472120 n.275G>A non_coding_transcript_exon_variant 0.19
rrs 1472148 n.303T>C non_coding_transcript_exon_variant 0.41
rrs 1472150 n.305T>A non_coding_transcript_exon_variant 0.39
rrs 1472172 n.327T>C non_coding_transcript_exon_variant 0.44
rrs 1472223 n.378C>G non_coding_transcript_exon_variant 0.5
rrs 1472225 n.380C>A non_coding_transcript_exon_variant 0.5
rrs 1472228 n.383G>C non_coding_transcript_exon_variant 0.5
rrs 1472245 n.400C>A non_coding_transcript_exon_variant 0.5
rrs 1472251 n.406G>C non_coding_transcript_exon_variant 0.5
rrs 1472484 n.639A>T non_coding_transcript_exon_variant 0.33
rrs 1472494 n.649A>G non_coding_transcript_exon_variant 0.38
rrs 1472496 n.651T>A non_coding_transcript_exon_variant 0.38
rrs 1472498 n.653C>T non_coding_transcript_exon_variant 0.38
rrs 1472506 n.661A>T non_coding_transcript_exon_variant 0.64
rrs 1472530 n.685G>A non_coding_transcript_exon_variant 0.71
rrs 1472572 n.727T>A non_coding_transcript_exon_variant 0.75
rrs 1472581 n.736A>T non_coding_transcript_exon_variant 0.9
rrs 1472591 n.746G>A non_coding_transcript_exon_variant 0.92
rrs 1472607 n.762G>A non_coding_transcript_exon_variant 0.81
rrs 1472655 n.810G>T non_coding_transcript_exon_variant 0.65
rrs 1472660 n.815T>C non_coding_transcript_exon_variant 0.65
rrs 1472692 n.847T>C non_coding_transcript_exon_variant 0.58
rrs 1472714 n.869A>G non_coding_transcript_exon_variant 0.65
rrs 1472734 n.889C>T non_coding_transcript_exon_variant 0.65
rrs 1472790 n.945T>C non_coding_transcript_exon_variant 0.56
rrs 1472824 n.979T>A non_coding_transcript_exon_variant 0.67
rrs 1472825 n.980G>A non_coding_transcript_exon_variant 0.67
rrs 1472828 n.983T>C non_coding_transcript_exon_variant 0.67
rrs 1472880 n.1035G>A non_coding_transcript_exon_variant 0.62
rrs 1472895 n.1050C>T non_coding_transcript_exon_variant 0.75
rrs 1472952 n.1107T>C non_coding_transcript_exon_variant 0.97
rrs 1472955 n.1110C>T non_coding_transcript_exon_variant 0.9
rrs 1472956 n.1111T>C non_coding_transcript_exon_variant 0.9
rrs 1472957 n.1112C>T non_coding_transcript_exon_variant 0.9
rrs 1472973 n.1128A>G non_coding_transcript_exon_variant 0.93
rrs 1472982 n.1137G>A non_coding_transcript_exon_variant 0.93
rrs 1472987 n.1142G>A non_coding_transcript_exon_variant 0.93
rrs 1472989 n.1144G>A non_coding_transcript_exon_variant 0.93
rrs 1472990 n.1145A>G non_coding_transcript_exon_variant 0.93
rrs 1473035 n.1190G>A non_coding_transcript_exon_variant 0.81
rrs 1473047 n.1202C>T non_coding_transcript_exon_variant 0.83
rrs 1473055 n.1210C>T non_coding_transcript_exon_variant 0.79
rrs 1473056 n.1211A>T non_coding_transcript_exon_variant 0.82
rrs 1473066 n.1221A>G non_coding_transcript_exon_variant 0.87
rrs 1473081 n.1236C>T non_coding_transcript_exon_variant 0.83
rrs 1473091 n.1246G>A non_coding_transcript_exon_variant 0.82
rrs 1473093 n.1248C>A non_coding_transcript_exon_variant 0.83
rrs 1473094 n.1249T>A non_coding_transcript_exon_variant 0.81
rrs 1473099 n.1254T>A non_coding_transcript_exon_variant 0.79
rrs 1473100 n.1255G>C non_coding_transcript_exon_variant 0.79
rrs 1473104 n.1259C>T non_coding_transcript_exon_variant 0.79
rrs 1473109 n.1264T>G non_coding_transcript_exon_variant 0.81
rrs 1473111 n.1266A>C non_coding_transcript_exon_variant 0.81
rrs 1473121 n.1276T>C non_coding_transcript_exon_variant 0.81
rrs 1473123 n.1278A>T non_coding_transcript_exon_variant 0.81
rrs 1473130 n.1285G>A non_coding_transcript_exon_variant 0.82
rrs 1473147 n.1302G>T non_coding_transcript_exon_variant 0.76
rrs 1473148 n.1303G>A non_coding_transcript_exon_variant 0.77
rrs 1473157 n.1312C>T non_coding_transcript_exon_variant 0.73
rrs 1473163 n.1318C>T non_coding_transcript_exon_variant 0.74
rrs 1473164 n.1319C>A non_coding_transcript_exon_variant 0.72
rrs 1473252 n.1407T>C non_coding_transcript_exon_variant 0.48
rrs 1473276 n.1431A>G non_coding_transcript_exon_variant 0.37
rrs 1473291 n.1446G>T non_coding_transcript_exon_variant 0.31
rrs 1473298 n.1453A>G non_coding_transcript_exon_variant 0.25
rrs 1473301 n.1456T>C non_coding_transcript_exon_variant 0.27
rrs 1473305 n.1460G>T non_coding_transcript_exon_variant 0.25
rrs 1473315 n.1470T>C non_coding_transcript_exon_variant 0.25
rrs 1473316 n.1471C>T non_coding_transcript_exon_variant 0.25
rrs 1473319 n.1474C>T non_coding_transcript_exon_variant 0.27
rrl 1473668 n.11C>G non_coding_transcript_exon_variant 0.11
rrl 1473673 n.16G>A non_coding_transcript_exon_variant 0.12
rrl 1473698 n.41G>A non_coding_transcript_exon_variant 0.15
rrl 1473699 n.42A>G non_coding_transcript_exon_variant 0.15
rrl 1473832 n.175C>T non_coding_transcript_exon_variant 0.44
rrl 1473833 n.176_177insT non_coding_transcript_exon_variant 0.47
rrl 1474139 n.482C>T non_coding_transcript_exon_variant 0.4
rrl 1474141 n.484G>C non_coding_transcript_exon_variant 0.5
rrl 1474142 n.485C>G non_coding_transcript_exon_variant 0.6
rrl 1474151 n.494C>T non_coding_transcript_exon_variant 0.67
rrl 1474155 n.498G>A non_coding_transcript_exon_variant 0.67
rrl 1474164 n.507C>T non_coding_transcript_exon_variant 0.78
rrl 1474171 n.514C>G non_coding_transcript_exon_variant 0.8
rrl 1474181 n.524C>T non_coding_transcript_exon_variant 0.91
rrl 1474183 n.526T>C non_coding_transcript_exon_variant 0.91
rrl 1474184 n.527C>T non_coding_transcript_exon_variant 0.91
rrl 1474202 n.545T>C non_coding_transcript_exon_variant 0.82
rrl 1474263 n.606G>A non_coding_transcript_exon_variant 0.77
rrl 1474269 n.612C>T non_coding_transcript_exon_variant 0.77
rrl 1474287 n.630T>A non_coding_transcript_exon_variant 0.69
rrl 1474290 n.633T>C non_coding_transcript_exon_variant 0.64
rrl 1474348 n.691C>T non_coding_transcript_exon_variant 0.89
rrl 1474351 n.694G>C non_coding_transcript_exon_variant 0.89
rrl 1474353 n.696A>G non_coding_transcript_exon_variant 0.89
rrl 1474354 n.697C>T non_coding_transcript_exon_variant 0.89
rrl 1474355 n.698A>G non_coding_transcript_exon_variant 0.89
rrl 1474356 n.699T>C non_coding_transcript_exon_variant 0.89
rrl 1474359 n.702C>G non_coding_transcript_exon_variant 0.89
rrl 1474362 n.705A>G non_coding_transcript_exon_variant 0.89
rrl 1474387 n.730C>T non_coding_transcript_exon_variant 1.0
rrl 1474402 n.745T>C non_coding_transcript_exon_variant 1.0
rrl 1474451 n.794T>C non_coding_transcript_exon_variant 0.83
rrl 1474454 n.797G>A non_coding_transcript_exon_variant 0.83
rrl 1474476 n.819C>G non_coding_transcript_exon_variant 0.62
rrl 1474483 n.826C>G non_coding_transcript_exon_variant 0.62
rrl 1474495 n.838G>A non_coding_transcript_exon_variant 0.62
rrl 1474496 n.839C>G non_coding_transcript_exon_variant 0.62
rrl 1474497 n.840G>C non_coding_transcript_exon_variant 0.62
rrl 1474498 n.841G>A non_coding_transcript_exon_variant 0.62
rrl 1474505 n.848C>T non_coding_transcript_exon_variant 0.62
rrl 1474506 n.849C>G non_coding_transcript_exon_variant 0.62
rrl 1474507 n.850G>T non_coding_transcript_exon_variant 0.62
rrl 1474508 n.851C>T non_coding_transcript_exon_variant 0.62
rrl 1474520 n.863A>C non_coding_transcript_exon_variant 0.56
rrl 1474529 n.872A>C non_coding_transcript_exon_variant 0.56
rrl 1474530 n.873G>A non_coding_transcript_exon_variant 0.56
rrl 1474537 n.880G>A non_coding_transcript_exon_variant 0.56
rrl 1474539 n.882C>T non_coding_transcript_exon_variant 0.56
rrl 1474540 n.883T>G non_coding_transcript_exon_variant 0.56
rrl 1474551 n.894G>C non_coding_transcript_exon_variant 0.75
rrl 1474558 n.901G>T non_coding_transcript_exon_variant 0.78
rrl 1474584 n.927C>T non_coding_transcript_exon_variant 0.89
rrl 1474636 n.979A>T non_coding_transcript_exon_variant 0.82
rrl 1474637 n.980C>T non_coding_transcript_exon_variant 0.82
rrl 1474638 n.981C>G non_coding_transcript_exon_variant 0.82
rrl 1474639 n.982G>C non_coding_transcript_exon_variant 0.82
rrl 1474663 n.1006C>T non_coding_transcript_exon_variant 0.75
rrl 1474673 n.1016T>C non_coding_transcript_exon_variant 0.67
rrl 1474676 n.1019T>C non_coding_transcript_exon_variant 0.67
rrl 1474677 n.1020A>G non_coding_transcript_exon_variant 0.67
rrl 1474692 n.1035G>A non_coding_transcript_exon_variant 0.67
rrl 1474694 n.1037C>T non_coding_transcript_exon_variant 0.64
rrl 1474709 n.1053_1056delTGGT non_coding_transcript_exon_variant 0.71
rrl 1474717 n.1060_1061insGGTTC non_coding_transcript_exon_variant 0.71
rrl 1474734 n.1077G>A non_coding_transcript_exon_variant 0.67
rrl 1474736 n.1079C>T non_coding_transcript_exon_variant 0.8
rrl 1474749 n.1092C>T non_coding_transcript_exon_variant 0.5
rrl 1474751 n.1094G>A non_coding_transcript_exon_variant 0.5
rrl 1474760 n.1103A>G non_coding_transcript_exon_variant 0.67
rrl 1474777 n.1120T>C non_coding_transcript_exon_variant 0.67
rrl 1474779 n.1122G>A non_coding_transcript_exon_variant 0.67
rrl 1474780 n.1123C>T non_coding_transcript_exon_variant 0.67
rrl 1474782 n.1125G>A non_coding_transcript_exon_variant 0.67
rrl 1474783 n.1126G>A non_coding_transcript_exon_variant 0.67
rrl 1474794 n.1137C>T non_coding_transcript_exon_variant 0.89
rrl 1474806 n.1149A>G non_coding_transcript_exon_variant 0.94
rrl 1474822 n.1165G>T non_coding_transcript_exon_variant 0.95
rrl 1474827 n.1170C>T non_coding_transcript_exon_variant 0.95
rrl 1474830 n.1173A>G non_coding_transcript_exon_variant 0.95
rrl 1474905 n.1248T>A non_coding_transcript_exon_variant 1.0
rrl 1474927 n.1271delC non_coding_transcript_exon_variant 1.0
rrl 1474932 n.1275C>T non_coding_transcript_exon_variant 1.0
rrl 1475655 n.1998T>A non_coding_transcript_exon_variant 0.33
rrl 1475659 n.2002G>A non_coding_transcript_exon_variant 0.67
rrl 1475672 n.2015C>T non_coding_transcript_exon_variant 0.71
rrl 1475696 n.2039T>A non_coding_transcript_exon_variant 0.88
rrl 1475697 n.2040C>T non_coding_transcript_exon_variant 0.88
rrl 1475699 n.2042C>T non_coding_transcript_exon_variant 0.94
rrl 1475703 n.2046A>T non_coding_transcript_exon_variant 0.84
rrl 1475763 n.2106C>T non_coding_transcript_exon_variant 1.0
rrl 1475883 n.2226A>T non_coding_transcript_exon_variant 0.9
rrl 1475884 n.2227A>G non_coding_transcript_exon_variant 0.9
rrl 1475897 n.2240T>C non_coding_transcript_exon_variant 0.68
rrl 1475898 n.2241A>G non_coding_transcript_exon_variant 0.68
rrl 1475899 n.2242G>A non_coding_transcript_exon_variant 0.68
rrl 1475916 n.2259C>T non_coding_transcript_exon_variant 0.62
rrl 1475943 n.2286G>A non_coding_transcript_exon_variant 0.56
rrl 1475952 n.2295A>G non_coding_transcript_exon_variant 0.56
rrl 1475963 n.2306G>A non_coding_transcript_exon_variant 0.43
rrl 1475975 n.2318C>T non_coding_transcript_exon_variant 0.31
rrl 1475977 n.2320A>G non_coding_transcript_exon_variant 0.25
rrl 1475978 n.2321C>T non_coding_transcript_exon_variant 0.33
rrl 1475988 n.2331A>G non_coding_transcript_exon_variant 0.22
rrl 1475989 n.2332T>G non_coding_transcript_exon_variant 0.22
rrl 1475990 n.2333G>C non_coding_transcript_exon_variant 0.22
rrl 1475997 n.2340A>G non_coding_transcript_exon_variant 0.22
rrl 1475998 n.2341C>T non_coding_transcript_exon_variant 0.22
rrl 1476337 n.2680C>T non_coding_transcript_exon_variant 0.58
rrl 1476359 n.2702C>G non_coding_transcript_exon_variant 0.78
rrl 1476381 n.2724G>C non_coding_transcript_exon_variant 0.8
rrl 1476428 n.2771C>T non_coding_transcript_exon_variant 0.83
rrl 1476429 n.2772A>C non_coding_transcript_exon_variant 0.83
rrl 1476466 n.2809C>T non_coding_transcript_exon_variant 0.76
rrl 1476506 n.2849T>C non_coding_transcript_exon_variant 0.61
rrl 1476515 n.2858C>T non_coding_transcript_exon_variant 0.46
rrl 1476519 n.2862C>T non_coding_transcript_exon_variant 0.36
rrl 1476524 n.2867C>A non_coding_transcript_exon_variant 0.36
rrl 1476525 n.2868A>G non_coding_transcript_exon_variant 0.36
rrl 1476530 n.2873C>T non_coding_transcript_exon_variant 0.44
rrl 1476534 n.2877A>T non_coding_transcript_exon_variant 0.44
rrl 1476538 n.2881A>G non_coding_transcript_exon_variant 0.4
rrl 1476539 n.2882A>G non_coding_transcript_exon_variant 0.4
rrl 1476540 n.2883C>G non_coding_transcript_exon_variant 0.4
rrl 1476547 n.2890C>T non_coding_transcript_exon_variant 0.36
rrl 1476584 n.2927C>T non_coding_transcript_exon_variant 0.19
rrl 1476585 n.2928A>G non_coding_transcript_exon_variant 0.19
rrl 1476594 n.2937C>A non_coding_transcript_exon_variant 0.14
rpsA 1834327 c.786G>T synonymous_variant 0.11
rpsA 1834348 c.807T>G synonymous_variant 0.16
rpsA 1834354 c.813G>C synonymous_variant 0.14
rpsA 1834357 c.816T>C synonymous_variant 0.14
rpsA 1834361 c.820_822delTTGinsCTC synonymous_variant 0.14
rpsA 1834366 c.825A>G synonymous_variant 0.15
rpsA 1834378 c.837T>G synonymous_variant 0.17
rpsA 1834387 c.846C>T synonymous_variant 0.18
rpsA 1834395 p.Arg285Gln missense_variant 0.21
rpsA 1834408 c.867C>G synonymous_variant 0.18
rpsA 1834411 c.870T>C synonymous_variant 0.18
rpsA 1834416 p.Ala292Val missense_variant 0.19
rpsA 1834423 c.882G>C synonymous_variant 0.18
rpsA 1834451 c.910_912delTTGinsCTC synonymous_variant 0.19
rpsA 1834468 c.927A>G synonymous_variant 0.2
rpsA 1834474 c.933C>G synonymous_variant 0.17
rpsA 1834486 p.Glu315Asp missense_variant 0.12
rpsA 1834489 c.948T>C synonymous_variant 0.11
tlyA 1917972 c.33A>G synonymous_variant 1.0
Rv1979c 2223293 c.-129A>G upstream_gene_variant 1.0
kasA 2518076 c.-39C>T upstream_gene_variant 1.0
ald 3086788 c.-32T>C upstream_gene_variant 1.0
fprA 3473996 c.-11_-10insA upstream_gene_variant 1.0
clpC1 4039781 c.924G>C synonymous_variant 0.11
clpC1 4039790 c.915C>A synonymous_variant 0.12
clpC1 4039829 p.Leu292Phe missense_variant 0.11
embA 4242643 c.-590C>T upstream_gene_variant 1.0
embC 4242803 p.Val981Leu missense_variant 1.0
whiB6 4338595 c.-75delG upstream_gene_variant 1.0