EBG00000313339 - n.545T>C


Drug resistance types
29 Sensitive 40 RR-TB 40 HR-TB 37 MDR-TB 29 Pre-XDR-TB 0 XDR-TB 149 Other
lineage Counts
lineage Count
La2 1
lineage4.2.1 5
lineage2.2.1 51
27
lineage4.4 2
lineage4.4.1.1 2
lineage2.2.1.1 4
lineage2.2 3
lineage4.2.2 3
lineage2.2.2 4
lineage4.4.2 2
lineage4.3.4.2 5
lineage4.1.2.1 19
lineage4.3.3 7
lineage4.6.2.2 6
lineage4.8 17
lineage3 17
lineage4.2.2.2 2
lineage1.1.2 1
lineage4.3.4 3
lineage1.1.3.2 1
lineage4 19
La1.7.1 1
lineage4.9;lineage3.1.1 1
lineage1.2.2.2 5
lineage3.1.3 2
lineage4.9 54
lineage4.1.2 6
lineage4.1.3 2
lineage1.2.1.1 1
lineage3.1 1
lineage3.1.2.1 2
lineage3.1.2.2 2
lineage1.2.2.1 2
lineage6.3.1 1
lineage3.1.1 2
lineage3.1.2 2
lineage4.1.1.3 3
lineage4.1.1.3.1 2
lineage4.1.1 2
lineage4.6.5 1
La1.8.1 3
lineage4.6.1.1 2
lineage4.3.4.1 3
lineage4.3 1
lineage1.1.3.1 1
lineage4.7 1
lineage4.3.2.1 2
lineage4.9.1 1
lineage4.9;lineage4.1 1
lineage4.9;lineage1.1 1
lineage4.9;lineage4.3.4 1
La1.7.X-unk4 1
lineage4.4.1.2 1
lineage4.3.2 1
lineage4.6 1
lineage4.3.1.1 1
lineage1.1.1 2
lineage4.6.1.2 1
lineage4.3.4.2.1 4
lineage4.4.1.1.1 1
lineage4.4.1.1;lineage4.1.2.1 1
spoligotype Counts
spoligotype Count
None 324
Geographic prevalence
Country level data for this variant is available for 20 isolates.
Statisctical support
Not enough data to calculate support.
Samples
ID Drug resistance Lineage Country iso2
SRR17156538 Sensitive La2 None
SRR14782539 MDR-TB lineage4.2.1 None
SRR16156697 MDR-TB lineage2.2.1 None
SRR14334194 Pre-XDR-TB lineage2.2.1 None
SRR16156832 RR-TB None
SRR16627752 RR-TB lineage4.4 None
SRR18002874 MDR-TB lineage2.2.1 None
SRR17567917 RR-TB lineage4.4.1.1 None
SRR18002887 MDR-TB lineage2.2.1.1 None
SRR18002891 MDR-TB lineage2.2.1 None
SRR18002903 Pre-XDR-TB lineage2.2.1 None
SRR18002937 Other lineage2.2.1 None
SRR18002901 MDR-TB lineage2.2.1 None
SRR18002945 RR-TB lineage2.2.1 None
SRR18002935 Pre-XDR-TB lineage2.2.1 None
SRR18002941 RR-TB lineage2.2.1 None
SRR18002948 Other lineage2.2 None
SRR18002947 MDR-TB lineage2.2.1 None
SRR18002967 Pre-XDR-TB lineage2.2.1 None
SRR18002956 HR-TB lineage2.2.1 None
SRR18002963 Other lineage2.2.1 None
SRR18002994 MDR-TB lineage4.2.2 None
SRR18002981 Other lineage2.2.1 None
SRR18002984 MDR-TB lineage2.2.2 None
SRR18002974 Pre-XDR-TB lineage2.2.1 None
SRR18002980 Other lineage2.2.1 None
SRR18002999 Pre-XDR-TB lineage2.2.1 None
SRR18002998 Pre-XDR-TB lineage2.2.2 None
SRR18003012 Pre-XDR-TB lineage2.2.1 None
SRR18003002 MDR-TB lineage2.2.1 None
SRR18003009 MDR-TB lineage2.2.1 None
SRR18003004 Pre-XDR-TB lineage2.2.2 None
SRR18003013 Pre-XDR-TB lineage4.4.2 None
SRR18003023 Other lineage2.2.1 None
SRR18003042 Other lineage2.2.1 None
SRR18003030 Pre-XDR-TB lineage2.2.1 None
SRR18003024 RR-TB lineage2.2.1 None
SRR18003032 Other lineage2.2.1 None
SRR18003038 Other lineage2.2.1 None
SRR19303818 Other lineage4.3.4.2 None
SRR18003049 Other lineage2.2.1 None
SRR18003045 Other lineage2.2.1 None
SRR18003047 MDR-TB lineage2.2.1 None
SRR18003046 MDR-TB lineage2.2.1 None
SRR18911555 Other lineage4.1.2.1 None
SRR19303796 Other lineage4.3.3 None
SRR19303819 Other lineage4.6.2.2 None
SRR19303817 Other lineage2.2.1 None
SRR19303820 RR-TB lineage4.8 None
SRR19303907 Other lineage4.8 None
SRR19303899 Other lineage3 None
SRR19304104 Other lineage4.8 None
SRR19303917 Other lineage2.2.1 None
SRR22048352 Sensitive lineage4.2.2.2 None
SRR19304115 Other lineage4.1.2.1 None
SRR21727760 Other lineage2.2.1 None
SRR22048536 Other lineage4.3.3 None
ERR4815171 HR-TB lineage1.1.2 None
SRR22424778 RR-TB lineage2.2.1.1 None
ERR176771 Sensitive None
SRR22175249 Pre-XDR-TB lineage2.2.1 None
ERR176778 HR-TB None
ERR161039 Sensitive lineage4.3.4 None
ERR176781 Sensitive lineage1.1.3.2 None
ERR176779 HR-TB None
ERR4815204 Other lineage2.2.1.1 gb
ERR181824 HR-TB lineage4 None
ERR1815538 Other La1.7.1 None
ERR171142 Other lineage4.9;lineage3.1.1 None
ERR181744 HR-TB None
ERR4815787 Other lineage2.2.1 None
ERR176651 HR-TB None
SRR3675265 Other lineage4 None
ERR4815517 Other lineage1.2.2.2 None
ERR4815079 RR-TB lineage3 None
ERR4815792 Other lineage4.1.2.1 None
ERR181887 HR-TB None
ERR4815572 Other lineage4.1.2.1 None
ERR2027220 Other lineage3.1.3 None
SRR3675509 Other lineage4.9 None
SRR3675513 Other lineage4.8 None
ERR4816988 Other lineage3 gb
ERR4817069 RR-TB None
ERR2027256 Other lineage4.1.2 None
ERR2027277 Other lineage4.8 None
ERR4816198 Sensitive lineage4.1.3 None
ERR2027209 MDR-TB lineage1.2.1.1 None
ERR2027257 Other lineage4.1.2.1 None
ERR2027290 RR-TB lineage3.1 None
ERR212123 Other None
ERR212125 HR-TB lineage4 None
ERR4816717 RR-TB lineage3.1.2.1 None
ERR212138 HR-TB lineage4 None
ERR4816458 Other lineage1.2.2.2 None
ERR4817301 Other lineage4.9 None
ERR4816729 Sensitive lineage4.9 None
ERR2229791 RR-TB lineage4.9 None
ERR4817310 Other lineage4.9 None
SRR4033549 HR-TB lineage2.2.2 None
ERR2510804 Other lineage2.2.1 None
SAMN02380982 MDR-TB lineage4.3.4.2 None
ERR4817840 Other lineage3.1.2.2 gb
ERR4817926 HR-TB lineage4.6.2.2 gb
ERR245662 Sensitive lineage1.2.2.1 None
ERR4818904 Other lineage4.8 None
ERR4818296 Other lineage4.2.2 None
ERR2512787 Sensitive lineage3 gb
ERR4818440 Other lineage6.3.1 None
SRR5007204 Other lineage4.1.2.1 None
SRR5341365 Pre-XDR-TB lineage3 None
ERR4820713 HR-TB lineage4.8 None
ERR4820209 HR-TB lineage4.1.2 None
ERR4819863 RR-TB lineage4.9 None
ERR4819770 Other lineage4.8 gb
ERR4819383 RR-TB lineage4.9 None
ERR4819481 Other lineage4.3.3 None
ERR4819622 Other lineage4.1.2.1 None
ERR4820030 Other lineage4.9 None
ERR4820829 Other lineage4.8 None
SRR6046089 Other lineage4.1.2.1 None
SRR6046087 Other None
SRR6046117 RR-TB lineage4.9 None
SRR6045516 Other lineage3.1.1 None
SRR6045553 RR-TB lineage4.9 None
ERR2179684 Sensitive lineage4.2.2 cn
ERR4821172 RR-TB lineage4.9 None
ERR4821272 RR-TB lineage4.1.2.1 None
ERR4822280 Other lineage4.1.3 None
ERR4821318 HR-TB lineage4.6.2.2 gb
ERR4821550 Other lineage2.2.1 None
SRR6045613 Other lineage3.1.3 None
SRR6045600 Other lineage3.1.2 gb
SRR6045603 RR-TB lineage4.1.1.3 None
SRR6046210 Other lineage4 None
SRR6045614 Other lineage4.8 None
SRR5818683 Sensitive lineage3.1.1 dj
SRR6045763 Pre-XDR-TB lineage2.2.1 None
SRR6045621 Other lineage4.1.1.3 None
SRR5818404 Other lineage4.9 None
SRR6045909 Other lineage4.8 None
SRR6044787 Other lineage4.4 None
SRR6044841 Other lineage4.9 None
SRR6045928 Other lineage4.9 None
SRR6044873 Other lineage4.1.1.3.1 None
SRR6044952 RR-TB lineage4.9 None
SRR6045920 Other lineage4.1.1 gb
SRR6044993 Other lineage3 None
SRR6045102 Sensitive lineage4.6.2.2 gb
SRR6045952 HR-TB None
SRR6045986 Other lineage3 None
SRR6045365 Other lineage3 gb
SRR6046177 Other lineage3.1.2 None
SRR6045178 Other lineage3 None
SRR6045358 Sensitive lineage4.9 None
SRR6045379 Other None
SRR6045384 Other lineage4.1.2 None
SRR6045376 HR-TB lineage4.1.2.1 gb
SRR6046440 Other lineage3.1.2.2 None
SRR6046343 Other lineage2.2.1 None
SRR6046456 Other lineage4.1.1.3.1 None
SRR6046484 Other lineage1.2.2.2 None
SRR6046482 HR-TB None
SRR6046761 Other lineage3 gb
SRR6046521 Other lineage4.4.1.1 None
SRR6046497 Other lineage4.9 None
SRR6046733 Pre-XDR-TB lineage2.2.1 None
SRR6046848 Other lineage4.6.5 None
ERR502472 Other lineage4.6.2.2 None
ERR502470 RR-TB lineage4.9 None
SRR6046907 Other lineage4.9 None
SRR6367397 Other lineage4.1.2.1 None
ERR502478 RR-TB lineage4.9 None
ERR502474 Pre-XDR-TB lineage4.9 None
ERR502473 Pre-XDR-TB lineage4.9 None
ERR502490 Sensitive lineage4.9 None
ERR502479 RR-TB lineage4.9 None
ERR502481 Pre-XDR-TB lineage4.9 None
ERR502484 Sensitive lineage4.9 None
ERR502485 Sensitive lineage4.9 None
ERR502486 Sensitive lineage4.9 None
ERR502489 Sensitive lineage4.9 None
ERR502482 Sensitive lineage4.9 None
ERR502483 Sensitive lineage4.9 None
SRR6896379 Other lineage4.9 None
ERR502498 Sensitive lineage4.9 None
SRR6982141 RR-TB lineage4.3.3 None
ERR502492 Sensitive lineage4.9 None
ERR502493 Sensitive lineage4.9 None
ERR502497 Sensitive lineage4.9 None
SRR6982138 Sensitive lineage4 None
ERR5311077 RR-TB La1.8.1 None
SAMN02567682 Other lineage4.6.1.1 ug
ERR2984800 Pre-XDR-TB lineage4.3.4.1 None
ERR3275941 RR-TB lineage4.3 nl
SRR6797586 HR-TB lineage1.1.3.1 None
SRR6982530 Other lineage1.2.2.1 None
SRR7131075 Other lineage4.8 None
SRR7131123 Other lineage4.8 None
SRR7131149 Pre-XDR-TB lineage4.8 None
SRR7131121 Other lineage4.3.3 None
SRR7131145 Other lineage4.1.2.1 None
SRR7131195 Other lineage2.2.1 None
SRR7131152 MDR-TB lineage2.2.1 None
SRR7131147 Other lineage4.1.2.1 None
SRR9971333 MDR-TB lineage4.1.1.3 None
SRR7131216 Other lineage4.1.2.1 None
SRR7131236 Other lineage4.3.4.2 None
SRR7131287 Other lineage2.2.1.1 None
SRR7645927 Other lineage4.8 None
SRR7585435 Other lineage4.9 None
SRR7645899 RR-TB lineage2.2.1 None
SRR7645928 RR-TB lineage4.7 None
SRR7645901 MDR-TB lineage2.2.1 None
SRR7645906 Other lineage2.2.1 None
SRR7645972 MDR-TB lineage4.2.1 None
SRR7645971 Other lineage2.2.1 None
SRR7755645 Pre-XDR-TB lineage2.2.1 None
SRR9971041 MDR-TB lineage4.3.3 None
SRR7646018 MDR-TB lineage4.2.1 None
SRR8651633 Pre-XDR-TB lineage4.4.2 None
SRR7755657 Other lineage4.8 None
SRR7755649 MDR-TB lineage4.2.1 None
SRR7755655 Other lineage4.1.2.1 None
SRR9971168 Other lineage4.3.2.1 None
SRR9971122 MDR-TB lineage4.8 None
SRR7755688 Pre-XDR-TB lineage4.2.1 None
ERR323045 HR-TB None
ERR037504 Other lineage4.9.1 None
ERR10219876 Other lineage4.3.4.2 None
ERR1063857 HR-TB None
ERR1063839 HR-TB lineage2.2 None
ERR1063858 HR-TB None
ERR1063862 HR-TB None
ERR10796560 MDR-TB lineage4.9;lineage4.1 None
ERR10796553 Other lineage4.9;lineage1.1 None
ERR1063859 HR-TB None
ERR10796566 Other lineage4.9;lineage4.3.4 None
ERR10796572 Other lineage4.3.4.1 None
ERR10796568 Other lineage4.9 None
ERR10796589 Other lineage4.9 None
ERR10796571 Other lineage4.9 None
ERR10796581 HR-TB lineage4.1.2 None
ERR10796629 Other lineage4 None
ERR10796591 MDR-TB lineage4.9 None
ERR10796595 Other lineage4.9 None
ERR10796598 RR-TB lineage4.9 None
ERR10796620 Other lineage4.1.1 None
ERR10796626 Other lineage4.1.2 None
ERR10796628 Other lineage4.3.3 None
ERR10796592 Other lineage4 None
ERR10796596 Other lineage4.9 None
ERR10796597 Other lineage4 None
ERR10796615 Other lineage4 None
ERR10796618 Other lineage4.3.4.1 None
ERR10796634 Other lineage4 None
ERR10796631 Other lineage4.3.4 None
ERR108125 Pre-XDR-TB lineage4.9 None
ERR10796635 Other lineage4 None
ERR10796636 Other lineage4.1.2.1 None
ERR10796640 Other lineage4.1.2.1 None
ERR3445487 Other La1.7.X-unk4 None
ERR126597 MDR-TB lineage4.4.1.2 None
ERR3283006 RR-TB lineage4.9 None
ERR3283021 HR-TB None
ERR3283046 MDR-TB lineage4.9 None
ERR1213933 Sensitive lineage4.1.2.1 pe
ERR3283032 HR-TB None
ERR3445503 HR-TB None
ERR3445501 HR-TB None
ERR3445502 HR-TB lineage4 None
ERR3797068 Other La1.8.1 None
ERR3468488 RR-TB La1.8.1 None
ERR3797062 RR-TB lineage4.9 None
ERR3797065 MDR-TB lineage4 None
ERR3797047 HR-TB lineage4 None
ERR3797063 HR-TB None
ERR4798059 Sensitive lineage3.1.2.1 in
ERR4457901 Sensitive lineage4 None
ERR4769472 Other lineage4.9 None
ERR4769521 HR-TB None
ERR4769554 RR-TB lineage4.9 None
ERR4799478 Pre-XDR-TB lineage2.2.1 None
ERR9117827 Other lineage1.2.2.2 None
ERR4810624 HR-TB lineage2.2 None
ERR5917687 MDR-TB lineage2.2.1 by
ERR6866807 HR-TB lineage4 None
ERR736817 HR-TB lineage4.3.4 None
ERR736875 HR-TB lineage4 None
ERR9117678 Other lineage4.6.2.2 None
ERR9117805 Other lineage4.3.2 None
ERR6197022 Other lineage4.9 None
ERR6197034 Other lineage4.9 None
ERR9117704 Other lineage4.6 None
ERR9117732 Other lineage1.2.2.2 None
ERR9117812 Other lineage4.3.1.1 None
ERR9117823 Other lineage1.1.1 None
ERR987757 MDR-TB lineage4.6.1.2 None
ERR9786346 Sensitive lineage4.3.4.2 None
SRR1049559 MDR-TB lineage4.3.4.2.1 None
SRR10315715 MDR-TB lineage4.4.1.1.1 None
SRR1049560 MDR-TB lineage4.3.4.2.1 None
SRR1049725 RR-TB lineage4.1.2.1 None
SRR1049673 Pre-XDR-TB lineage3 None
SRR1049672 Other lineage3 None
SRR1062871 MDR-TB lineage4.3.4.2.1 None
SRR1049726 MDR-TB lineage4.4.1.1;lineage4.1.2.1 None
SRR11349147 RR-TB lineage4.3.2.1 None
SRR1062918 Pre-XDR-TB lineage3 None
SRR1062928 RR-TB lineage4 None
SRR11342683 Other lineage4.1.2 None
SRR11342688 Other lineage4.2.2.2 None
SRR11349207 RR-TB lineage2.2.1 None
SRR1140736 RR-TB None
SRR1140716 Pre-XDR-TB lineage3 None
SRR1140753 MDR-TB lineage4.3.4.2.1 None
SRR1173170 Other lineage4.9 None
SRR1172075 Pre-XDR-TB lineage3 None
SRR1173310 MDR-TB None
SRR1173281 RR-TB lineage3 None
SRR1173719 HR-TB lineage3 None
SRR11972438 HR-TB lineage1.1.1 None
SRR1173770 Other lineage4.9 None
SRR1173834 Other lineage4.6.1.1 None
SRR1173740 Other None