EBG00000313339 - n.545T>C
Drug resistance types
16 Sensitive
33 RR-TB
18 HR-TB
34 MDR-TB
14 Pre-XDR-TB
0 XDR-TB
78 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage3 | 5 |
| lineage4.2.1 | 8 |
| lineage4.1;lineage4.9 | 1 |
| lineage4.9 | 49 |
| lineage4.1.3 | 2 |
| lineage4.3.4.2 | 3 |
| lineage2.2.1.1 | 1 |
| lineage4.4.1.1 | 2 |
| lineage4.9;lineage7 | 1 |
| lineage2.2.1 | 23 |
| lineage4.8 | 12 |
| lineage4.1.2.1;lineage4.4.1 | 1 |
| lineage4.1.2.1 | 7 |
| lineage4.4.2 | 2 |
| lineage4.7 | 2 |
| lineage4.6.2.2 | 1 |
| La3;lineage4.9 | 2 |
| lineage2.2 | 1 |
| lineage4.3.3 | 8 |
| lineage4 | 1 |
| lineage4.3.4.2.1 | 9 |
| lineage4.6.1.1 | 2 |
| lineage4.2.2.2 | 4 |
| lineage4.3.3;lineage4.9 | 1 |
| lineage3.1.3 | 1 |
| La1.7.1;lineage4.9 | 1 |
| lineage3.1.1;lineage4.9 | 1 |
| La1.7.X-unk4 | 1 |
| lineage3;lineage4 | 1 |
| lineage4.1.2.1;lineage4.9 | 1 |
| lineage4.9.1 | 1 |
| lineage2.2.1;lineage4.9 | 1 |
| La1.7.1 | 1 |
| lineage4.3.4 | 1 |
| La2;lineage2.2 | 1 |
| lineage4.1.1.1 | 5 |
| lineage2.2;lineage4 | 1 |
| lineage1;lineage4.9 | 1 |
| lineage4.4 | 1 |
| La3;lineage4.3.4 | 1 |
| La1.7.1;La1.7.X-unk4 | 1 |
| lineage4.3.4.1;lineage4.9 | 1 |
| lineage4.3.4.1 | 2 |
| La1.8.1 | 1 |
| lineage4.3.4.2;lineage4.9 | 1 |
| La1.7.1;La1.7.X-unk4;lineage7 | 1 |
| lineage4.1.1.3 | 2 |
| lineage1.2.2.1 | 1 |
| lineage2.2.2 | 3 |
| lineage3.1.1 | 2 |
| lineage4.1.2.1;lineage4.4.1.1 | 1 |
| lineage4.8.1 | 1 |
| lineage1.2.1.1 | 2 |
| lineage4.3 | 1 |
| La2;lineage4.9 | 1 |
| lineage4.4.1.2 | 1 |
| lineage4.4.1.1.1 | 1 |
| lineage4.3.2.1 | 1 |
| 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 193 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR5341365 | Pre-XDR-TB | lineage3 | None | SRR7755649 | MDR-TB | lineage4.2.1 | None | ERR10796629 | Other | lineage4.1;lineage4.9 | None | ERR176778 | HR-TB | lineage4.9 | None | SRR11342671 | RR-TB | lineage4.1.3 | None | SRR11342673 | RR-TB | lineage4.3.4.2 | None | SRR12062533 | Pre-XDR-TB | lineage2.2.1.1 | None | SRR17567917 | RR-TB | lineage4.4.1.1 | None | ERR3445502 | Sensitive | lineage4.9;lineage7 | None | ERR736875 | HR-TB | lineage4.9 | None | SRR18003045 | Other | lineage2.2.1 | None | SRR19303907 | Other | lineage4.8 | None | ERR867570 | RR-TB | lineage4.9 | None | SRR1049725 | Other | lineage4.1.2.1;lineage4.4.1 | None | SRR1140736 | Other | lineage4.1.2.1 | None | SRR14782539 | MDR-TB | lineage4.2.1 | None | SRR12062493 | Pre-XDR-TB | lineage4.4.2 | None | SRR7645928 | Other | lineage4.7 | None | ERR10796560 | Other | lineage4.9 | None | SRR1209015 | Sensitive | lineage4.9 | None | ERR502472 | Sensitive | lineage4.6.2.2 | None | ERR176651 | Other | lineage4.9 | None | ERR181744 | HR-TB | La3;lineage4.9 | None | ERR4810624 | MDR-TB | lineage2.2 | None | SRR11342640 | MDR-TB | lineage4.3.3 | None | SRR11342649 | MDR-TB | lineage4.3.3 | None | SRR18003042 | Other | lineage2.2.1 | None | SRR1173719 | Other | lineage4.9 | None | SRR3675265 | Other | lineage4 | None | SRR1140753 | RR-TB | lineage4.3.4.2.1 | None | ERR10796640 | Other | lineage4.1.2.1 | None | ERR4769554 | RR-TB | lineage4.9 | None | SRR11342669 | Other | lineage4.8 | None | SRR1173834 | Other | lineage4.6.1.1 | None | ERR10796634 | Other | lineage4.7 | None | SRR11342687 | RR-TB | lineage4.2.2.2 | None | SRR11342687 | RR-TB | lineage4.2.2.2 | None | SRR18002963 | Other | lineage2.2.1 | None | ERR4769521 | RR-TB | lineage4.9 | None | SRR11342686 | MDR-TB | lineage4.8 | None | ERR11465628 | Sensitive | lineage4.3.4.2.1 | None | ERR10796615 | Other | lineage4.3.3;lineage4.9 | None | SRR7645901 | MDR-TB | lineage2.2.1 | None | ERR161037 | Other | lineage4.9 | None | ERR2027220 | Sensitive | lineage3.1.3 | None | SRR3675582 | Other | lineage4.9 | None | ERR502473 | RR-TB | lineage4.9 | None | SRR11342688 | Other | lineage4.2.2.2 | None | ERR867572 | Other | lineage4.9 | None | SRR3675509 | Other | lineage4.9 | None | SRR18003012 | Pre-XDR-TB | lineage2.2.1 | None | ERR176779 | HR-TB | lineage4.9 | None | ERR3283021 | HR-TB | lineage4.9 | None | ERR867541 | MDR-TB | lineage4.2.1 | None | ERR867541 | MDR-TB | lineage4.2.1 | None | ERR1063859 | HR-TB | La1.7.1;lineage4.9 | None | ERR171142 | Other | lineage3.1.1;lineage4.9 | None | SAMN02380982 | MDR-TB | lineage4.3.4.2.1 | None | ERR1063849 | HR-TB | lineage4.9 | None | ERR3445487 | Other | La1.7.X-unk4 | None | SRR1173740 | Other | lineage3;lineage4 | None | SRR1062928 | Other | lineage4.1.2.1;lineage4.9 | None | ERR4819383 | RR-TB | lineage4.9 | None | ERR037504 | Other | lineage4.9.1 | None | ERR867571 | Other | lineage4.9 | None | SRR1062871 | RR-TB | lineage4.3.4.2.1 | None | SRR11349207 | RR-TB | lineage2.2.1 | None | SRR10808730 | Other | lineage4.9 | None | SRR1173770 | Other | lineage4.9 | None | ERR181824 | HR-TB | lineage4.9 | None | ERR10796597 | Other | lineage4.3.3 | None | SRR6044952 | Other | lineage4.9 | None | SRR12708406 | HR-TB | lineage2.2.1;lineage4.9 | None | SRR18002981 | Other | lineage2.2.1 | None | SRR7646018 | MDR-TB | lineage4.2.1 | None | ERR10796591 | Other | lineage4.9 | None | ERR4818904 | Other | lineage4.8 | None | ERR1815538 | Other | La1.7.1 | None | SRR1049560 | MDR-TB | lineage4.3.4.2.1 | None | SRR18002874 | MDR-TB | lineage2.2.1 | None | SRR7131149 | Pre-XDR-TB | lineage4.8 | None | SRR7755657 | Other | lineage4.8 | None | SRR22048536 | Other | lineage4.3.3 | None | ERR736817 | HR-TB | lineage4.3.4 | None | SRR18003013 | Pre-XDR-TB | lineage4.4.2 | None | ERR867524 | Pre-XDR-TB | lineage4.2.1 | None | ERR1063839 | MDR-TB | La2;lineage2.2 | None | SRR18002974 | Other | lineage2.2.1 | None | ERR10796628 | Other | lineage4.3.3 | None | SRR7755655 | Other | lineage4.1.2.1 | None | ERR10796626 | Other | lineage4.1.2.1 | None | ERR4821172 | RR-TB | lineage4.9 | None | ERR10796571 | Other | lineage4.9 | None | ERR10796589 | Other | lineage4.9 | None | ERR867538 | Other | lineage4.2.2.2 | None | ERR867569 | Other | lineage4.9 | None | SRR11342642 | MDR-TB | lineage4.1.1.1 | None | SRR11342642 | MDR-TB | lineage4.1.1.1 | None | SRR16156832 | RR-TB | lineage2.2;lineage4 | None | ERR10796620 | Other | lineage4.1.1.1 | None | ERR10796620 | Other | lineage4.1.1.1 | None | ERR108125 | RR-TB | lineage4.9 | None | SRR7755645 | Pre-XDR-TB | lineage2.2.1 | None | SRR7755688 | Pre-XDR-TB | lineage4.2.1 | None | ERR323045 | HR-TB | lineage1;lineage4.9 | None | ERR181887 | Other | lineage4.9 | None | SRR16627752 | RR-TB | lineage4.4 | None | SRR11342651 | MDR-TB | lineage4.1.1.1 | None | SRR11342660 | MDR-TB | lineage2.2.1 | None | SRR11342660 | MDR-TB | lineage2.2.1 | None | ERR161039 | HR-TB | La3;lineage4.3.4 | None | ERR3445503 | Other | La1.7.1;La1.7.X-unk4 | None | ERR10796572 | Other | lineage4.3.4.1;lineage4.9 | None | ERR4816198 | Sensitive | lineage4.1.3 | None | ERR502478 | RR-TB | lineage4.9 | None | ERR11465279 | Sensitive | lineage4.3.4.1 | None | ERR4820030 | Other | lineage4.9 | None | SRR11342698 | RR-TB | lineage4.4.1.1 | None | ERR5311077 | Other | La1.8.1 | None | ERR3797062 | RR-TB | lineage4.9 | None | ERR10796631 | Other | lineage4.3.4.2;lineage4.9 | None | SRR14334194 | Pre-XDR-TB | lineage2.2.1 | None | ERR3445501 | HR-TB | La1.7.1;La1.7.X-unk4;lineage7 | None | SRR16156697 | RR-TB | lineage2.2.1 | None | SRR11342647 | MDR-TB | lineage4.1.1.3 | None | SRR11342647 | MDR-TB | lineage4.1.1.3 | None | ERR11465300 | Sensitive | lineage4.3.4.2.1 | None | SAMN02567682 | Other | lineage4.6.1.1 | ug | ERR245662 | Sensitive | lineage1.2.2.1 | None | SRR7645972 | MDR-TB | lineage4.2.1 | None | SRR18002998 | Pre-XDR-TB | lineage2.2.2 | None | ERR867573 | Other | lineage4.9 | None | ERR10796566 | Other | lineage4.9 | None | SRR1062918 | Other | lineage3 | None | SRR7070134 | Other | lineage3.1.1 | None | SRR9971122 | MDR-TB | lineage4.8 | None | ERR10796635 | Other | lineage4.8 | None | SRR1173281 | Other | lineage3 | None | SRR1049726 | Other | lineage4.1.2.1;lineage4.4.1.1 | None | SRR1173310 | Other | lineage3.1.1 | None | ERR1063858 | HR-TB | lineage4.9 | None | SRR1173170 | Other | lineage4.9 | None | SRR11342662 | MDR-TB | lineage4.8.1 | None | SRR7645906 | Other | lineage2.2.1 | None | ERR2027209 | MDR-TB | lineage1.2.1.1 | None | ERR2027209 | MDR-TB | lineage1.2.1.1 | None | SRR18003004 | Pre-XDR-TB | lineage2.2.2 | None | SRR9971041 | MDR-TB | lineage4.3.3 | None | ERR10219876 | Other | lineage4.3.4.2 | None | SRR19303820 | RR-TB | lineage4.8 | None | ERR502481 | RR-TB | lineage4.9 | None | SRR21727760 | Other | lineage2.2.1 | None | ERR502474 | RR-TB | lineage4.9 | None | SRR7131123 | Other | lineage4.8 | None | SRR7645899 | Other | lineage2.2.1 | None | SRR6046497 | Sensitive | lineage4.9 | None | ERR3275941 | RR-TB | lineage4.3 | nl | ERR1063857 | MDR-TB | La2;lineage4.9 | None | SRR7131121 | Other | lineage4.3.3 | None | SRR7645927 | Other | lineage4.8 | None | ERR867567 | RR-TB | lineage3 | None | SRR11342691 | MDR-TB | lineage2.2.1 | None | SRR18002984 | MDR-TB | lineage2.2.2 | None | SRR19304104 | Other | lineage4.8 | None | ERR4799478 | Pre-XDR-TB | lineage2.2.1 | None | ERR11465152 | Sensitive | lineage4.3.4.1 | None | ERR3797063 | Sensitive | La3;lineage4.9 | None | SRR6982141 | Other | lineage4.3.3 | None | SRR18003046 | MDR-TB | lineage2.2.1 | None | ERR1063862 | HR-TB | lineage4.9 | None | ERR11465235 | Sensitive | lineage4.3.4.2.1 | None | ERR11465301 | Other | lineage4.3.4.2.1 | None | ERR4821272 | RR-TB | lineage4.1.2.1 | None | ERR11465232 | Sensitive | lineage4.1.2.1 | None | ERR867522 | Pre-XDR-TB | lineage2.2.1 | None | ERR126597 | HR-TB | lineage4.4.1.2 | None | ERR3797047 | MDR-TB | lineage4.9 | None | SRR11342644 | MDR-TB | lineage4.4.1.1.1 | None | ERR9786346 | Sensitive | lineage4.3.4.2 | None | ERR502470 | RR-TB | lineage4.9 | None | ERR502470 | RR-TB | lineage4.9 | None | ERR212125 | HR-TB | lineage4.9 | None | ERR10796598 | Other | lineage4.9 | None | ERR3283006 | RR-TB | lineage4.9 | None | SRR9971168 | Other | lineage4.3.2.1 | None | ERR4819863 | RR-TB | lineage4.9 | None | ERR10796636 | Other | lineage4.1.2.1 | None | SRR6046087 | Sensitive | lineage4.9 | None | ERR4817069 | RR-TB | None | SRR7645971 | Other | lineage2.2.1 | None | SRR1049559 | MDR-TB | lineage4.3.4.2.1 | None | SRR11342646 | HR-TB | lineage3 | None | SRR18003024 | RR-TB | lineage2.2.1 | None |
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