EBG00000313339 - n.545T>C
Drug resistance types
29 Sensitive
40 RR-TB
40 HR-TB
37 MDR-TB
29 Pre-XDR-TB
0 XDR-TB
149 Other
lineage Counts
| lineage | Count |
|---|---|
| La2 | 1 |
| lineage4.2.1 | 5 |
| lineage2.2.1 | 51 |
| 27 | |
| lineage4.4 | 2 |
| lineage4.4.1.1 | 2 |
| lineage2.2.1.1 | 4 |
| lineage2.2 | 3 |
| lineage4.2.2 | 3 |
| lineage2.2.2 | 4 |
| lineage4.4.2 | 2 |
| lineage4.3.4.2 | 5 |
| lineage4.1.2.1 | 19 |
| lineage4.3.3 | 7 |
| lineage4.6.2.2 | 6 |
| lineage4.8 | 17 |
| lineage3 | 17 |
| lineage4.2.2.2 | 2 |
| lineage1.1.2 | 1 |
| lineage4.3.4 | 3 |
| lineage1.1.3.2 | 1 |
| lineage4 | 19 |
| La1.7.1 | 1 |
| lineage4.9;lineage3.1.1 | 1 |
| lineage1.2.2.2 | 5 |
| lineage3.1.3 | 2 |
| lineage4.9 | 54 |
| lineage4.1.2 | 6 |
| lineage4.1.3 | 2 |
| lineage1.2.1.1 | 1 |
| lineage3.1 | 1 |
| lineage3.1.2.1 | 2 |
| lineage3.1.2.2 | 2 |
| lineage1.2.2.1 | 2 |
| lineage6.3.1 | 1 |
| lineage3.1.1 | 2 |
| lineage3.1.2 | 2 |
| lineage4.1.1.3 | 3 |
| lineage4.1.1.3.1 | 2 |
| lineage4.1.1 | 2 |
| lineage4.6.5 | 1 |
| La1.8.1 | 3 |
| lineage4.6.1.1 | 2 |
| lineage4.3.4.1 | 3 |
| lineage4.3 | 1 |
| lineage1.1.3.1 | 1 |
| lineage4.7 | 1 |
| lineage4.3.2.1 | 2 |
| lineage4.9.1 | 1 |
| lineage4.9;lineage4.1 | 1 |
| lineage4.9;lineage1.1 | 1 |
| lineage4.9;lineage4.3.4 | 1 |
| La1.7.X-unk4 | 1 |
| lineage4.4.1.2 | 1 |
| lineage4.3.2 | 1 |
| lineage4.6 | 1 |
| lineage4.3.1.1 | 1 |
| lineage1.1.1 | 2 |
| lineage4.6.1.2 | 1 |
| lineage4.3.4.2.1 | 4 |
| lineage4.4.1.1.1 | 1 |
| lineage4.4.1.1;lineage4.1.2.1 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 324 |
Geographic prevalence
Country level data for this variant is available for 20 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR17156538 | Sensitive | La2 | None | SRR14782539 | MDR-TB | lineage4.2.1 | None | SRR16156697 | MDR-TB | lineage2.2.1 | None | SRR14334194 | Pre-XDR-TB | lineage2.2.1 | None | SRR16156832 | RR-TB | None | SRR16627752 | RR-TB | lineage4.4 | None | SRR18002874 | MDR-TB | lineage2.2.1 | None | SRR17567917 | RR-TB | lineage4.4.1.1 | None | SRR18002887 | MDR-TB | lineage2.2.1.1 | None | SRR18002891 | MDR-TB | lineage2.2.1 | None | SRR18002903 | Pre-XDR-TB | lineage2.2.1 | None | SRR18002937 | Other | lineage2.2.1 | None | SRR18002901 | MDR-TB | lineage2.2.1 | None | SRR18002945 | RR-TB | lineage2.2.1 | None | SRR18002935 | Pre-XDR-TB | lineage2.2.1 | None | SRR18002941 | RR-TB | lineage2.2.1 | None | SRR18002948 | Other | lineage2.2 | None | SRR18002947 | MDR-TB | lineage2.2.1 | None | SRR18002967 | Pre-XDR-TB | lineage2.2.1 | None | SRR18002956 | HR-TB | lineage2.2.1 | None | SRR18002963 | Other | lineage2.2.1 | None | SRR18002994 | MDR-TB | lineage4.2.2 | None | SRR18002981 | Other | lineage2.2.1 | None | SRR18002984 | MDR-TB | lineage2.2.2 | None | SRR18002974 | Pre-XDR-TB | lineage2.2.1 | None | SRR18002980 | Other | lineage2.2.1 | None | SRR18002999 | Pre-XDR-TB | lineage2.2.1 | None | SRR18002998 | Pre-XDR-TB | lineage2.2.2 | None | SRR18003012 | Pre-XDR-TB | lineage2.2.1 | None | SRR18003002 | MDR-TB | lineage2.2.1 | None | SRR18003009 | MDR-TB | lineage2.2.1 | None | SRR18003004 | Pre-XDR-TB | lineage2.2.2 | None | SRR18003013 | Pre-XDR-TB | lineage4.4.2 | None | SRR18003023 | Other | lineage2.2.1 | None | SRR18003042 | Other | lineage2.2.1 | None | SRR18003030 | Pre-XDR-TB | lineage2.2.1 | None | SRR18003024 | RR-TB | lineage2.2.1 | None | SRR18003032 | Other | lineage2.2.1 | None | SRR18003038 | Other | lineage2.2.1 | None | SRR19303818 | Other | lineage4.3.4.2 | None | SRR18003049 | Other | lineage2.2.1 | None | SRR18003045 | Other | lineage2.2.1 | None | SRR18003047 | MDR-TB | lineage2.2.1 | None | SRR18003046 | MDR-TB | lineage2.2.1 | None | SRR18911555 | Other | lineage4.1.2.1 | None | SRR19303796 | Other | lineage4.3.3 | None | SRR19303819 | Other | lineage4.6.2.2 | None | SRR19303817 | Other | lineage2.2.1 | None | SRR19303820 | RR-TB | lineage4.8 | None | SRR19303907 | Other | lineage4.8 | None | SRR19303899 | Other | lineage3 | None | SRR19304104 | Other | lineage4.8 | None | SRR19303917 | Other | lineage2.2.1 | None | SRR22048352 | Sensitive | lineage4.2.2.2 | None | SRR19304115 | Other | lineage4.1.2.1 | None | SRR21727760 | Other | lineage2.2.1 | None | SRR22048536 | Other | lineage4.3.3 | None | ERR4815171 | HR-TB | lineage1.1.2 | None | SRR22424778 | RR-TB | lineage2.2.1.1 | None | ERR176771 | Sensitive | None | SRR22175249 | Pre-XDR-TB | lineage2.2.1 | None | ERR176778 | HR-TB | None | ERR161039 | Sensitive | lineage4.3.4 | None | ERR176781 | Sensitive | lineage1.1.3.2 | None | ERR176779 | HR-TB | None | ERR4815204 | Other | lineage2.2.1.1 | gb | ERR181824 | HR-TB | lineage4 | None | ERR1815538 | Other | La1.7.1 | None | ERR171142 | Other | lineage4.9;lineage3.1.1 | None | ERR181744 | HR-TB | None | ERR4815787 | Other | lineage2.2.1 | None | ERR176651 | HR-TB | None | SRR3675265 | Other | lineage4 | None | ERR4815517 | Other | lineage1.2.2.2 | None | ERR4815079 | RR-TB | lineage3 | None | ERR4815792 | Other | lineage4.1.2.1 | None | ERR181887 | HR-TB | None | ERR4815572 | Other | lineage4.1.2.1 | None | ERR2027220 | Other | lineage3.1.3 | None | SRR3675509 | Other | lineage4.9 | None | SRR3675513 | Other | lineage4.8 | None | ERR4816988 | Other | lineage3 | gb | ERR4817069 | RR-TB | None | ERR2027256 | Other | lineage4.1.2 | None | ERR2027277 | Other | lineage4.8 | None | ERR4816198 | Sensitive | lineage4.1.3 | None | ERR2027209 | MDR-TB | lineage1.2.1.1 | None | ERR2027257 | Other | lineage4.1.2.1 | None | ERR2027290 | RR-TB | lineage3.1 | None | ERR212123 | Other | None | ERR212125 | HR-TB | lineage4 | None | ERR4816717 | RR-TB | lineage3.1.2.1 | None | ERR212138 | HR-TB | lineage4 | None | ERR4816458 | Other | lineage1.2.2.2 | None | ERR4817301 | Other | lineage4.9 | None | ERR4816729 | Sensitive | lineage4.9 | None | ERR2229791 | RR-TB | lineage4.9 | None | ERR4817310 | Other | lineage4.9 | None | SRR4033549 | HR-TB | lineage2.2.2 | None | ERR2510804 | Other | lineage2.2.1 | None | SAMN02380982 | MDR-TB | lineage4.3.4.2 | None | ERR4817840 | Other | lineage3.1.2.2 | gb | ERR4817926 | HR-TB | lineage4.6.2.2 | gb | ERR245662 | Sensitive | lineage1.2.2.1 | None | ERR4818904 | Other | lineage4.8 | None | ERR4818296 | Other | lineage4.2.2 | None | ERR2512787 | Sensitive | lineage3 | gb | ERR4818440 | Other | lineage6.3.1 | None | SRR5007204 | Other | lineage4.1.2.1 | None | SRR5341365 | Pre-XDR-TB | lineage3 | None | ERR4820713 | HR-TB | lineage4.8 | None | ERR4820209 | HR-TB | lineage4.1.2 | None | ERR4819863 | RR-TB | lineage4.9 | None | ERR4819770 | Other | lineage4.8 | gb | ERR4819383 | RR-TB | lineage4.9 | None | ERR4819481 | Other | lineage4.3.3 | None | ERR4819622 | Other | lineage4.1.2.1 | None | ERR4820030 | Other | lineage4.9 | None | ERR4820829 | Other | lineage4.8 | None | SRR6046089 | Other | lineage4.1.2.1 | None | SRR6046087 | Other | None | SRR6046117 | RR-TB | lineage4.9 | None | SRR6045516 | Other | lineage3.1.1 | None | SRR6045553 | RR-TB | lineage4.9 | None | ERR2179684 | Sensitive | lineage4.2.2 | cn | ERR4821172 | RR-TB | lineage4.9 | None | ERR4821272 | RR-TB | lineage4.1.2.1 | None | ERR4822280 | Other | lineage4.1.3 | None | ERR4821318 | HR-TB | lineage4.6.2.2 | gb | ERR4821550 | Other | lineage2.2.1 | None | SRR6045613 | Other | lineage3.1.3 | None | SRR6045600 | Other | lineage3.1.2 | gb | SRR6045603 | RR-TB | lineage4.1.1.3 | None | SRR6046210 | Other | lineage4 | None | SRR6045614 | Other | lineage4.8 | None | SRR5818683 | Sensitive | lineage3.1.1 | dj | SRR6045763 | Pre-XDR-TB | lineage2.2.1 | None | SRR6045621 | Other | lineage4.1.1.3 | None | SRR5818404 | Other | lineage4.9 | None | SRR6045909 | Other | lineage4.8 | None | SRR6044787 | Other | lineage4.4 | None | SRR6044841 | Other | lineage4.9 | None | SRR6045928 | Other | lineage4.9 | None | SRR6044873 | Other | lineage4.1.1.3.1 | None | SRR6044952 | RR-TB | lineage4.9 | None | SRR6045920 | Other | lineage4.1.1 | gb | SRR6044993 | Other | lineage3 | None | SRR6045102 | Sensitive | lineage4.6.2.2 | gb | SRR6045952 | HR-TB | None | SRR6045986 | Other | lineage3 | None | SRR6045365 | Other | lineage3 | gb | SRR6046177 | Other | lineage3.1.2 | None | SRR6045178 | Other | lineage3 | None | SRR6045358 | Sensitive | lineage4.9 | None | SRR6045379 | Other | None | SRR6045384 | Other | lineage4.1.2 | None | SRR6045376 | HR-TB | lineage4.1.2.1 | gb | SRR6046440 | Other | lineage3.1.2.2 | None | SRR6046343 | Other | lineage2.2.1 | None | SRR6046456 | Other | lineage4.1.1.3.1 | None | SRR6046484 | Other | lineage1.2.2.2 | None | SRR6046482 | HR-TB | None | SRR6046761 | Other | lineage3 | gb | SRR6046521 | Other | lineage4.4.1.1 | None | SRR6046497 | Other | lineage4.9 | None | SRR6046733 | Pre-XDR-TB | lineage2.2.1 | None | SRR6046848 | Other | lineage4.6.5 | None | ERR502472 | Other | lineage4.6.2.2 | None | ERR502470 | RR-TB | lineage4.9 | None | SRR6046907 | Other | lineage4.9 | None | SRR6367397 | Other | lineage4.1.2.1 | None | ERR502478 | RR-TB | lineage4.9 | None | ERR502474 | Pre-XDR-TB | lineage4.9 | None | ERR502473 | Pre-XDR-TB | lineage4.9 | None | ERR502490 | Sensitive | lineage4.9 | None | ERR502479 | RR-TB | lineage4.9 | None | ERR502481 | Pre-XDR-TB | lineage4.9 | None | ERR502484 | Sensitive | lineage4.9 | None | ERR502485 | Sensitive | lineage4.9 | None | ERR502486 | Sensitive | lineage4.9 | None | ERR502489 | Sensitive | lineage4.9 | None | ERR502482 | Sensitive | lineage4.9 | None | ERR502483 | Sensitive | lineage4.9 | None | SRR6896379 | Other | lineage4.9 | None | ERR502498 | Sensitive | lineage4.9 | None | SRR6982141 | RR-TB | lineage4.3.3 | None | ERR502492 | Sensitive | lineage4.9 | None | ERR502493 | Sensitive | lineage4.9 | None | ERR502497 | Sensitive | lineage4.9 | None | SRR6982138 | Sensitive | lineage4 | None | ERR5311077 | RR-TB | La1.8.1 | None | SAMN02567682 | Other | lineage4.6.1.1 | ug | ERR2984800 | Pre-XDR-TB | lineage4.3.4.1 | None | ERR3275941 | RR-TB | lineage4.3 | nl | SRR6797586 | HR-TB | lineage1.1.3.1 | None | SRR6982530 | Other | lineage1.2.2.1 | None | SRR7131075 | Other | lineage4.8 | None | SRR7131123 | Other | lineage4.8 | None | SRR7131149 | Pre-XDR-TB | lineage4.8 | None | SRR7131121 | Other | lineage4.3.3 | None | SRR7131145 | Other | lineage4.1.2.1 | None | SRR7131195 | Other | lineage2.2.1 | None | SRR7131152 | MDR-TB | lineage2.2.1 | None | SRR7131147 | Other | lineage4.1.2.1 | None | SRR9971333 | MDR-TB | lineage4.1.1.3 | None | SRR7131216 | Other | lineage4.1.2.1 | None | SRR7131236 | Other | lineage4.3.4.2 | None | SRR7131287 | Other | lineage2.2.1.1 | None | SRR7645927 | Other | lineage4.8 | None | SRR7585435 | Other | lineage4.9 | None | SRR7645899 | RR-TB | lineage2.2.1 | None | SRR7645928 | RR-TB | lineage4.7 | None | SRR7645901 | MDR-TB | lineage2.2.1 | None | SRR7645906 | Other | lineage2.2.1 | None | SRR7645972 | MDR-TB | lineage4.2.1 | None | SRR7645971 | Other | lineage2.2.1 | None | SRR7755645 | Pre-XDR-TB | lineage2.2.1 | None | SRR9971041 | MDR-TB | lineage4.3.3 | None | SRR7646018 | MDR-TB | lineage4.2.1 | None | SRR8651633 | Pre-XDR-TB | lineage4.4.2 | None | SRR7755657 | Other | lineage4.8 | None | SRR7755649 | MDR-TB | lineage4.2.1 | None | SRR7755655 | Other | lineage4.1.2.1 | None | SRR9971168 | Other | lineage4.3.2.1 | None | SRR9971122 | MDR-TB | lineage4.8 | None | SRR7755688 | Pre-XDR-TB | lineage4.2.1 | None | ERR323045 | HR-TB | None | ERR037504 | Other | lineage4.9.1 | None | ERR10219876 | Other | lineage4.3.4.2 | None | ERR1063857 | HR-TB | None | ERR1063839 | HR-TB | lineage2.2 | None | ERR1063858 | HR-TB | None | ERR1063862 | HR-TB | None | ERR10796560 | MDR-TB | lineage4.9;lineage4.1 | None | ERR10796553 | Other | lineage4.9;lineage1.1 | None | ERR1063859 | HR-TB | None | ERR10796566 | Other | lineage4.9;lineage4.3.4 | None | ERR10796572 | Other | lineage4.3.4.1 | None | ERR10796568 | Other | lineage4.9 | None | ERR10796589 | Other | lineage4.9 | None | ERR10796571 | Other | lineage4.9 | None | ERR10796581 | HR-TB | lineage4.1.2 | None | ERR10796629 | Other | lineage4 | None | ERR10796591 | MDR-TB | lineage4.9 | None | ERR10796595 | Other | lineage4.9 | None | ERR10796598 | RR-TB | lineage4.9 | None | ERR10796620 | Other | lineage4.1.1 | None | ERR10796626 | Other | lineage4.1.2 | None | ERR10796628 | Other | lineage4.3.3 | None | ERR10796592 | Other | lineage4 | None | ERR10796596 | Other | lineage4.9 | None | ERR10796597 | Other | lineage4 | None | ERR10796615 | Other | lineage4 | None | ERR10796618 | Other | lineage4.3.4.1 | None | ERR10796634 | Other | lineage4 | None | ERR10796631 | Other | lineage4.3.4 | None | ERR108125 | Pre-XDR-TB | lineage4.9 | None | ERR10796635 | Other | lineage4 | None | ERR10796636 | Other | lineage4.1.2.1 | None | ERR10796640 | Other | lineage4.1.2.1 | None | ERR3445487 | Other | La1.7.X-unk4 | None | ERR126597 | MDR-TB | lineage4.4.1.2 | None | ERR3283006 | RR-TB | lineage4.9 | None | ERR3283021 | HR-TB | None | ERR3283046 | MDR-TB | lineage4.9 | None | ERR1213933 | Sensitive | lineage4.1.2.1 | pe | ERR3283032 | HR-TB | None | ERR3445503 | HR-TB | None | ERR3445501 | HR-TB | None | ERR3445502 | HR-TB | lineage4 | None | ERR3797068 | Other | La1.8.1 | None | ERR3468488 | RR-TB | La1.8.1 | None | ERR3797062 | RR-TB | lineage4.9 | None | ERR3797065 | MDR-TB | lineage4 | None | ERR3797047 | HR-TB | lineage4 | None | ERR3797063 | HR-TB | None | ERR4798059 | Sensitive | lineage3.1.2.1 | in | ERR4457901 | Sensitive | lineage4 | None | ERR4769472 | Other | lineage4.9 | None | ERR4769521 | HR-TB | None | ERR4769554 | RR-TB | lineage4.9 | None | ERR4799478 | Pre-XDR-TB | lineage2.2.1 | None | ERR9117827 | Other | lineage1.2.2.2 | None | ERR4810624 | HR-TB | lineage2.2 | None | ERR5917687 | MDR-TB | lineage2.2.1 | by | ERR6866807 | HR-TB | lineage4 | None | ERR736817 | HR-TB | lineage4.3.4 | None | ERR736875 | HR-TB | lineage4 | None | ERR9117678 | Other | lineage4.6.2.2 | None | ERR9117805 | Other | lineage4.3.2 | None | ERR6197022 | Other | lineage4.9 | None | ERR6197034 | Other | lineage4.9 | None | ERR9117704 | Other | lineage4.6 | None | ERR9117732 | Other | lineage1.2.2.2 | None | ERR9117812 | Other | lineage4.3.1.1 | None | ERR9117823 | Other | lineage1.1.1 | None | ERR987757 | MDR-TB | lineage4.6.1.2 | None | ERR9786346 | Sensitive | lineage4.3.4.2 | None | SRR1049559 | MDR-TB | lineage4.3.4.2.1 | None | SRR10315715 | MDR-TB | lineage4.4.1.1.1 | None | SRR1049560 | MDR-TB | lineage4.3.4.2.1 | None | SRR1049725 | RR-TB | lineage4.1.2.1 | None | SRR1049673 | Pre-XDR-TB | lineage3 | None | SRR1049672 | Other | lineage3 | None | SRR1062871 | MDR-TB | lineage4.3.4.2.1 | None | SRR1049726 | MDR-TB | lineage4.4.1.1;lineage4.1.2.1 | None | SRR11349147 | RR-TB | lineage4.3.2.1 | None | SRR1062918 | Pre-XDR-TB | lineage3 | None | SRR1062928 | RR-TB | lineage4 | None | SRR11342683 | Other | lineage4.1.2 | None | SRR11342688 | Other | lineage4.2.2.2 | None | SRR11349207 | RR-TB | lineage2.2.1 | None | SRR1140736 | RR-TB | None | SRR1140716 | Pre-XDR-TB | lineage3 | None | SRR1140753 | MDR-TB | lineage4.3.4.2.1 | None | SRR1173170 | Other | lineage4.9 | None | SRR1172075 | Pre-XDR-TB | lineage3 | None | SRR1173310 | MDR-TB | None | SRR1173281 | RR-TB | lineage3 | None | SRR1173719 | HR-TB | lineage3 | None | SRR11972438 | HR-TB | lineage1.1.1 | None | SRR1173770 | Other | lineage4.9 | None | SRR1173834 | Other | lineage4.6.1.1 | None | SRR1173740 | Other | None |
|---|
