Rv0667 - c.1278C>A
Note: the variant has been searched for in a non-representative convenience
dataset of samples from the ENA. This sampleset may contain overrepresentation
in certain categories such as geographic source, drug resistance type and
lineage. Interpretation of variant frequencies should be performed cautiously
with this in mind.
Drug resistance types
125 Sensitive
56 RR-TB
15 HR-TB
22 MDR-TB
7 Pre-XDR-TB
0 XDR-TB
52 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage4.8 | 28 |
| lineage2.2.1 | 12 |
| La1.7.1;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.2;lineage6.3 | 2 |
| lineage3 | 7 |
| lineage4.9 | 132 |
| La1.7.1;M.canetti;lineage4.2;lineage6.2;lineage6.3 | 1 |
| La3;lineage4.9 | 7 |
| lineage2.2.2 | 1 |
| lineage4.1.2.1 | 7 |
| lineage4.2.1 | 2 |
| lineage4.4.1.1 | 3 |
| lineage4.2.2.2 | 1 |
| lineage4.1.1.1 | 3 |
| lineage4.4.1.1.1 | 3 |
| lineage4.1.1.3 | 5 |
| lineage4.1.2 | 2 |
| lineage4.3.2.1 | 6 |
| La1.6 | 1 |
| La1.8.1 | 3 |
| lineage4.8.1 | 2 |
| La3;lineage2.1;lineage4.9;lineage6.3 | 1 |
| lineage4.9.1 | 1 |
| lineage4.1.1.3.1 | 1 |
| lineage4.1.2.1;lineage4.4.1 | 1 |
| lineage1;lineage4.9 | 1 |
| La3;lineage4 | 1 |
| lineage4.3.4.2.1 | 1 |
| lineage4 | 7 |
| lineage3;lineage4 | 1 |
| lineage2.2.1;lineage4 | 2 |
| lineage4.3.1 | 1 |
| lineage1.1.3.1 | 1 |
| lineage4.3.3;lineage4.9 | 1 |
| lineage4.3.3 | 2 |
| lineage4.3 | 1 |
| lineage4.3.3;lineage4.8 | 3 |
| La1.7.1;M.canetti;lineage4.2;lineage4.9;lineage6.2;lineage6.3 | 1 |
| lineage3.1.1 | 1 |
| lineage2.2.1;lineage4.9 | 2 |
| 2 | |
| lineage4.1.1.3;lineage4.9 | 2 |
| lineage2;lineage4.9 | 1 |
| lineage4.7 | 2 |
| lineage4.4.1.2 | 1 |
| lineage4.1;lineage4.9 | 2 |
| lineage5 | 1 |
| lineage1.1.2 | 1 |
| lineage1.2.1.1 | 1 |
| La1.3 | 1 |
| lineage4.3.4.2 | 1 |
| lineage1.1.1;lineage4 | 1 |
| lineage5.1.4 | 1 |
| lineage4.1.2.1;lineage4.4.1.1 | 1 |
| lineage4.5 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 277 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | ERR978755 | RR-TB | lineage4.8 | None | SRR12708414 | HR-TB | lineage2.2.1 | None | ERR2026698 | HR-TB | La1.7.1;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.2;lineage6.3 | None | ERR978746_ERR978747_ERR978748 | RR-TB | lineage4.8 | None | SRR1049673 | Pre-XDR-TB | lineage3 | None | SRR1180345 | Other | lineage4.9 | None | SRR1180300 | Sensitive | lineage4.9 | None | SRR1180375 | Sensitive | lineage4.9 | None | SRR1180391 | Sensitive | lineage4.9 | None | ERR502481 | RR-TB | lineage4.9 | None | ERR502474 | RR-TB | lineage4.9 | None | ERR400320 | Sensitive | lineage4.9 | None | ERR4819305 | Sensitive | lineage4.9 | None | ERR2026695 | MDR-TB | La1.7.1;M.canetti;lineage4.2;lineage6.2;lineage6.3 | None | ERR2513830 | RR-TB | lineage4.8 | None | ERR978726 | RR-TB | lineage4.8 | None | SRR5341296 | Sensitive | lineage4.9 | None | ERR3797048 | Other | La3;lineage4.9 | None | SAMEA3501073 | RR-TB | lineage4.8 | None | ERR736837 | Pre-XDR-TB | lineage4.9 | None | ERR363490 | Sensitive | lineage4.9 | None | SRR3675455 | Sensitive | lineage4.9 | None | ERR978761_ERR978762_ERR978760 | RR-TB | lineage4.8 | None | ERR978750_ERR978752_ERR978751 | RR-TB | lineage4.8 | None | ERR363426 | Sensitive | lineage4.9 | None | SRR1180420 | Sensitive | lineage4.9 | None | SRR11662694 | Other | lineage4.9 | None | ERR363449 | Sensitive | lineage4.9 | None | SRR1175508 | Sensitive | lineage4.9 | None | SRR12708370 | Pre-XDR-TB | lineage2.2.2 | None | ERR4813263 | MDR-TB | lineage4.8 | None | ERR6865513 | Other | lineage4.1.2.1 | None | ERR6866125 | Sensitive | lineage4.1.2.1 | None | ERR867541 | MDR-TB | lineage4.2.1 | None | ERR502478 | RR-TB | lineage4.9 | None | ERR349299 | Other | lineage4.9 | None | ERR9896153 | RR-TB | lineage4.4.1.1 | None | ERR2514552 | Sensitive | lineage3 | None | SRR6045371 | Other | lineage4.9 | None | SRR6046802 | Other | lineage4.9 | None | SRR11342687 | RR-TB | lineage4.2.2.2 | None | SRR11342651 | MDR-TB | lineage4.1.1.1 | None | SRR11342696 | MDR-TB | lineage4.4.1.1.1 | None | SRR11342647 | MDR-TB | lineage4.1.1.3 | None | SRR11342658 | RR-TB | lineage4.1.2 | None | SRR11349147 | RR-TB | lineage4.3.2.1 | None | SRR1180977 | Sensitive | lineage4.9 | None | ERR349298 | Sensitive | lineage4.9 | None | ERR323037 | Other | lineage4.9 | None | SRR10993951 | RR-TB | La1.6 | None | SRR3675387 | Other | lineage4.9 | None | ERR6358951 | Sensitive | lineage4.9 | None | ERR3797064 | Other | La3;lineage4.9 | None | ERR978767_ERR978765_ERR978766 | RR-TB | lineage4.8 | None | SRR12416842 | HR-TB | lineage4.9 | None | ERR3468488 | Other | La1.8.1 | None | SRR3675229 | Sensitive | lineage4.9 | None | ERR369160 | Sensitive | lineage4.9 | None | SRR3675247 | Other | lineage4.9 | None | SRR21677886 | Sensitive | lineage4.9 | None | SRR9970979 | Sensitive | lineage4.8 | None | SRR9971150 | RR-TB | lineage4.8.1 | None | SRR1175512 | Sensitive | lineage4.9 | None | SRR1180399 | Sensitive | lineage4.9 | None | ERR373947 | Other | lineage4.9 | None | ERR4819383 | RR-TB | lineage4.9 | None | SRR3675517 | Other | La3;lineage2.1;lineage4.9;lineage6.3 | None | ERR11465189 | RR-TB | lineage4.9.1 | None | SRR1180413 | Sensitive | lineage4.9 | None | ERR349266 | Sensitive | lineage4.9 | None | ERR373946 | Sensitive | lineage4.9 | None | SRR3675472 | Sensitive | lineage4.9 | None | ERR349296 | Sensitive | lineage4.9 | None | ERR4819863 | RR-TB | lineage4.9 | None | ERR4797264 | Sensitive | lineage4.9 | None | SRR1181402 | Sensitive | lineage4.9 | None | SRR7070157 | Other | lineage4.1.1.3.1 | None | ERR369159 | Sensitive | lineage4.9 | None | ERR4797313 | Sensitive | lineage2.2.1 | None | ERR363446 | Sensitive | lineage4.9 | None | SRR6045002 | RR-TB | lineage4.9 | None | SRR6045503 | Sensitive | lineage4.9 | None | SRR1049725 | Other | lineage4.1.2.1;lineage4.4.1 | None | SRR1175513 | Sensitive | lineage4.9 | None | SRR1180410 | Sensitive | lineage4.9 | None | ERR4797350 | Sensitive | lineage1;lineage4.9 | None | SRR6046611 | Sensitive | lineage4.9 | None | ERR3283028 | Other | La3;lineage4 | None | SRR1172807 | Sensitive | lineage4.9 | None | ERR369163 | Sensitive | lineage4.9 | None | SRR12708399 | MDR-TB | lineage4.3.4.2.1 | None | ERR3275450 | Other | lineage4 | None | ERR369158 | Other | lineage4.9 | None | ERR369151 | Other | lineage4.9 | None | SRR3675580 | Sensitive | lineage4.9 | None | SRR1180444 | Sensitive | lineage4.9 | None | SRR3675522 | Other | lineage4.9 | None | SRR12708413 | HR-TB | lineage4.1.1.3 | None | ERR4818393 | RR-TB | lineage3;lineage4 | None | ERR4817204 | Other | lineage4.9 | None | ERR6866410 | Sensitive | lineage4.9 | None | SRR1181237 | Sensitive | lineage2.2.1;lineage4 | None | ERR2026697 | HR-TB | La1.7.1;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.2;lineage6.3 | None | ERR363506 | Sensitive | lineage4.9 | None | SRR1184021 | Sensitive | lineage4.9 | None | ERR349300 | Sensitive | lineage4.9 | None | ERR363479 | Sensitive | lineage4.9 | None | ERR369161 | Sensitive | lineage4.9 | None | SRR3675473 | Sensitive | lineage4.9 | None | SRR3675514 | Sensitive | lineage4.9 | None | SRR5341345 | Sensitive | lineage4.9 | None | ERR363437 | Sensitive | lineage4.9 | None | ERR3283014 | Sensitive | La3;lineage4.9 | None | ERR1063855 | Other | lineage4.9 | None | ERR4829816 | RR-TB | lineage4.4.1.1 | None | ERR4829039 | RR-TB | lineage4.3.1 | None | ERR2513724 | Sensitive | lineage4.3.2.1 | None | ERR4797184 | Sensitive | lineage4.9 | None | ERR6359074 | HR-TB | lineage4.9 | None | ERR400326 | Other | lineage4.9 | None | ERR4819864 | RR-TB | lineage1.1.3.1 | None | ERR978760 | RR-TB | lineage4.8 | None | SRR11342636 | MDR-TB | lineage4.3.3;lineage4.9 | None | ERR2446382 | Other | lineage4 | None | SRR11349145 | Pre-XDR-TB | lineage4.4.1.1.1 | None | SRR11349186 | MDR-TB | lineage4.3.3 | None | SRR11342662 | MDR-TB | lineage4.8.1 | None | SRR3675260 | Sensitive | lineage4.9 | None | ERR363509 | Sensitive | lineage4.9 | None | ERR867523 | Pre-XDR-TB | lineage2.2.1 | None | SRR1180319 | Sensitive | lineage4.9 | None | ERR867542 | HR-TB | lineage4.3 | None | SRR1183054 | Sensitive | lineage4.9 | None | ERR363499 | Sensitive | lineage4.9 | None | SRR1062920 | MDR-TB | lineage4.3.3;lineage4.8 | None | ERR4816904 | Sensitive | lineage4.1.2.1 | None | SRR6046564 | Sensitive | lineage4.9 | None | SRR1181349 | Sensitive | lineage4 | None | ERR5311077 | Other | La1.8.1 | None | SRR20970043 | MDR-TB | lineage2.2.1 | None | SRR2010299 | Pre-XDR-TB | lineage2.2.1 | None | ERR363502 | Other | lineage4.9 | None | SRR9971114 | Other | lineage2.2.1 | None | ERR2026696 | MDR-TB | La1.7.1;M.canetti;lineage4.2;lineage4.9;lineage6.2;lineage6.3 | None | ERR4820410 | RR-TB | lineage3.1.1 | None | SRR9971333 | MDR-TB | lineage4.1.1.3 | None | SRR6045050 | Sensitive | lineage4.3.2.1 | None | ERR363447 | Other | lineage4.9 | None | SRR6045706 | Sensitive | lineage4.9 | None | SRR6044819 | Sensitive | lineage4.9 | None | ERR3797065 | RR-TB | lineage4.9 | None | ERR978734_ERR978733_ERR978735 | RR-TB | lineage4.8 | None | ERR369157 | Sensitive | lineage4.9 | None | SRR1181351 | Sensitive | lineage4.9 | None | SRR1181390 | Sensitive | lineage2.2.1;lineage4.9 | None | SRR12708416 | Sensitive | None | ERR978754 | RR-TB | lineage4.8 | None | ERR3797081 | Sensitive | lineage4.9 | None | ERR4815556 | RR-TB | lineage3 | None | SAMEA3501052 | RR-TB | lineage4.8 | None | SRR1735598 | RR-TB | lineage4.9 | None | SAMEA3501067 | RR-TB | lineage4.8 | None | ERR978757 | RR-TB | lineage4.8 | None | ERR4769442 | Sensitive | lineage4.9 | None | ERR2517475 | Other | lineage4 | None | ERR349264 | Sensitive | lineage4.9 | None | ERR349330 | Sensitive | lineage4.9 | None | ERR978734 | RR-TB | lineage4.8 | None | SRR1180355 | Sensitive | lineage4.9 | None | SRR1175507 | Sensitive | lineage4.1.1.3;lineage4.9 | None | SRR1140716 | Other | lineage3 | None | SAMEA3501063 | RR-TB | lineage4.8 | None | SRR1049677 | MDR-TB | lineage4.3.3;lineage4.8 | None | SRR1175506 | Sensitive | lineage4.9 | None | SRR1180250 | Other | lineage4.9 | None | SRR1181325 | Sensitive | lineage4.9 | None | SRR1180406 | Sensitive | lineage4.9 | None | ERR4811030 | Sensitive | lineage4.9 | None | ERR978765 | RR-TB | lineage4.8 | None | SRR1181215 | Sensitive | lineage4.4.1.1.1 | None | SRR1049676 | MDR-TB | lineage4.3.3;lineage4.8 | None | SRR1175496 | Sensitive | lineage4.9 | None | SRR12708409 | HR-TB | lineage4.3.3 | None | ERR363498 | Sensitive | lineage4.9 | None | SRR3675265 | Other | lineage4 | None | SRR1735596 | RR-TB | lineage4.9 | None | SRR1180946 | Sensitive | lineage2;lineage4.9 | None | ERR502943 | Sensitive | lineage2.2.1;lineage4 | None | SRR1791747 | Other | La1.8.1 | None | ERR4821686 | Sensitive | lineage4.1.2.1 | None | ERR4178309 | Other | lineage4.1.2.1 | None | SRR1184114 | Sensitive | lineage2.2.1;lineage4.9 | None | ERR4818259 | RR-TB | lineage4.1.1.1 | None | SRR12708418 | HR-TB | lineage2.2.1 | None | SRR1049672 | Other | lineage3 | None | ERR4799547 | HR-TB | lineage2.2.1 | None | SRR3675279 | Sensitive | lineage4.9 | None | ERR363421 | Sensitive | lineage4.9 | None | ERR987707 | MDR-TB | lineage4.7 | None | SRR12708407 | HR-TB | lineage4.3.2.1 | None | ERR6359066 | HR-TB | lineage4.9 | None | ERR126597 | HR-TB | lineage4.4.1.2 | None | SRR1175487 | Sensitive | lineage4.9 | None | SAMEA3501065 | RR-TB | lineage4.8 | None | ERR349265 | Other | lineage4.9 | None | ERR373945 | Sensitive | lineage4.9 | None | SRR12708374 | Sensitive | lineage4.1;lineage4.9 | None | SRR12708398 | Sensitive | lineage4.4.1.1 | None | ERR4816967 | Other | lineage5 | None | SRR3675235 | Sensitive | lineage4.9 | None | ERR978755_ERR978756_ERR978754_ERR978757 | RR-TB | lineage4.8 | None | ERR400345 | Other | lineage4.9 | None | SRR1180148 | Sensitive | lineage4.9 | None | ERR3324368 | RR-TB | lineage1.1.2 | None | ERR6865502 | Sensitive | lineage4 | None | SRR6046897 | Sensitive | lineage4.9 | None | ERR4814396 | Sensitive | lineage4.1.1.3 | None | ERR502479 | RR-TB | lineage4.9 | None | ERR2027209 | MDR-TB | lineage1.2.1.1 | None | ERR4769436 | Other | La1.3 | None | ERR4816113 | Sensitive | lineage4.1.1.1 | None | ERR4820043 | Sensitive | lineage4.1.2.1 | None | ERR4819528 | RR-TB | lineage3 | None | ERR363474 | Sensitive | lineage4.9 | None | ERR4821272 | RR-TB | lineage4.1.2.1 | None | ERR3797063 | Sensitive | La3;lineage4.9 | None | SRR1181283 | Sensitive | lineage4.9 | None | ERR4178226 | Sensitive | lineage4 | None | ERR4816745 | Pre-XDR-TB | lineage2.2.1 | None | ERR3283047 | Sensitive | La3;lineage4.9 | None | ERR502473 | RR-TB | lineage4.9 | None | ERR3283011 | Other | La3;lineage4.9 | None | SRR6046245 | Other | lineage4.9 | None | SRR10315751 | MDR-TB | lineage4.8 | None | ERR4817189 | Other | lineage4.7 | None | SRR12708392 | Other | lineage2.2.1 | None | ERR4819706 | MDR-TB | lineage4.3.4.2 | None | ERR970449 | RR-TB | lineage4.1.1.3 | None | SRR6511621 | Sensitive | lineage4.9 | None | SRR5341323 | Sensitive | lineage4.9 | None | ERR485006 | HR-TB | lineage4.9 | None | ERR400336 | Sensitive | lineage4.9 | None | ERR2512770 | Sensitive | lineage4.2.1 | None | ERR978767 | RR-TB | lineage4.8 | None | ERR4596910 | Sensitive | lineage4.9 | None | ERR978766 | RR-TB | lineage4.8 | None | ERR4812155 | Other | lineage4.9 | None | ERR4817998 | Other | lineage3 | None | ERR363445 | Other | lineage4.9 | None | SRR9971080 | RR-TB | lineage2.2.1 | None | SRR9970981 | RR-TB | lineage4.3.2.1 | None | SRR9971122 | MDR-TB | lineage4.8 | None | SRR9971112 | Other | lineage2.2.1 | None | SRR9970980 | Other | lineage4.1.2 | None | ERR3283057 | Sensitive | La3;lineage4.9 | None | SRR3675585 | Sensitive | lineage4.9 | None | ERR4831638 | Sensitive | lineage1.1.1;lineage4 | None | ERR2513283 | Sensitive | lineage5.1.4 | None | SAMEA3501070 | RR-TB | lineage4.8 | None | ERR736831 | Other | lineage4.9 | None | ERR363456 | Sensitive | lineage4.9 | None | ERR4817069 | RR-TB | None | ERR369156 | Sensitive | lineage4.9 | None | ERR4797474 | Sensitive | lineage4.9 | None | SRR1175500 | Sensitive | lineage4.1.1.3;lineage4.9 | None | SRR12708396 | MDR-TB | lineage4.3.2.1 | None | SRR1180312 | Sensitive | lineage4.9 | None | SRR1049726 | Other | lineage4.1.2.1;lineage4.4.1.1 | None | SRR3675477 | Sensitive | lineage4.9 | None | ERR363500 | Sensitive | lineage4.9 | None | ERR978750 | RR-TB | lineage4.8 | None | ERR369162 | Other | lineage4.9 | None | ERR978733 | RR-TB | lineage4.8 | None | ERR363453 | Sensitive | lineage4.9 | None | ERR4769439 | HR-TB | lineage4.9 | None | ERR4798431 | Sensitive | lineage4.1;lineage4.9 | None | ERR4811031 | Sensitive | lineage4.5 | None |
|---|
