TB-Profiler result

Run: ERR4818259
Summary

Run ID: ERR4818259

Sample name:

Date: 01-04-2023 15:27:34

Number of reads: 496337

Percentage reads mapped: 71.28

Strain: lineage4.1.1

Drug-resistance: RR-TB

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Drug resistance: This table reports drug-resistance associated mutations found in known resistance genes
Drug Resistance Supporting mutations
Lineage Table: The lineage is inferred by analysing lineage specific SNPs
Lineage Family Main Spoligotype RDs Frequency
lineage4 Euro-American LAM;T;S;X;H None 1.0
lineage4.1 Euro-American T;X;H None 1.0
lineage4.1.1 Euro-American (X-type) X1;X2;X3 None 0.99
Drug resistance-Associated Mutations: This table reports mutations found in candidate resistance genes which have been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction Drugs
rpoB 761127 p.Ser441Ala missense_variant 0.44 rifampicin
rrs 1472733 n.888G>A non_coding_transcript_exon_variant 0.23 streptomycin
Non-Associated Mutations: This table reports mutations found in candidate resistance genes which have not been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction
gyrA 7362 p.Glu21Gln missense_variant 1.0
gyrA 7585 p.Ser95Thr missense_variant 1.0
gyrA 9304 p.Gly668Asp missense_variant 1.0
rpoB 761027 c.1221A>G synonymous_variant 0.38
rpoB 761030 c.1224G>C synonymous_variant 0.43
rpoB 761037 c.1231T>C synonymous_variant 0.5
rpoB 761051 c.1245G>C synonymous_variant 0.5
rpoB 761054 c.1248G>C synonymous_variant 0.5
rpoB 761057 c.1251G>C synonymous_variant 0.5
rpoB 761060 c.1254C>G synonymous_variant 0.53
rpoB 761084 c.1278C>A synonymous_variant 0.53
rpoB 761088 c.1282_1283delAGinsTC synonymous_variant 0.53
rpoB 761096 c.1290G>C synonymous_variant 0.59
rpoB 761097 c.1291_1293delAGCinsTCG synonymous_variant 0.59
rpoB 761102 c.1296A>G synonymous_variant 0.56
rpoB 761132 c.1326G>C synonymous_variant 0.44
rpoB 761133 c.1327T>C synonymous_variant 0.44
rpoB 761150 c.1344A>C synonymous_variant 0.38
rpoB 761159 c.1353G>C synonymous_variant 0.36
rpoB 761165 c.1359G>C synonymous_variant 0.32
rpoB 761174 c.1368T>C synonymous_variant 0.19
rpoB 762114 p.Ile770Val missense_variant 0.21
rpoB 762125 c.2319G>A synonymous_variant 0.21
rpoB 762126 p.Val774Ser missense_variant 0.21
rpoB 762143 c.2337T>C synonymous_variant 0.27
rpoB 762149 c.2343G>C synonymous_variant 0.29
rpoB 762156 p.Val784Ile missense_variant 0.25
rpoB 762167 c.2361T>C synonymous_variant 0.27
rpoB 762176 c.2370T>C synonymous_variant 0.27
rpoB 762177 p.Arg791Thr missense_variant 0.27
rpoB 762181 p.Asp792Ala missense_variant 0.27
rpoB 762185 c.2379G>C synonymous_variant 0.27
rpoB 762194 c.2388G>C synonymous_variant 0.27
rpoB 762212 c.2406G>C synonymous_variant 0.25
rpoB 762254 c.2448T>C synonymous_variant 0.22
rpoB 762266 c.2460T>C synonymous_variant 0.2
rpoB 762284 c.2478G>C synonymous_variant 0.17
rpoB 762293 c.2487T>C synonymous_variant 0.18
rpoC 762410 c.-960T>C upstream_gene_variant 0.17
rpoC 763031 c.-339T>C upstream_gene_variant 0.15
rpoB 763038 p.Thr1078Ala missense_variant 0.12
rpoC 763043 c.-327G>C upstream_gene_variant 0.12
rpoC 763053 c.-317T>C upstream_gene_variant 0.12
rpoC 763070 c.-300T>C upstream_gene_variant 0.12
rpoB 763077 p.Val1091Thr missense_variant 0.12
rpoC 763103 c.-267G>C upstream_gene_variant 0.16
rpoC 763115 c.-255T>C upstream_gene_variant 0.12
rpoB 763119 p.Asn1105Asp missense_variant 0.11
rpoC 763127 c.-243G>C upstream_gene_variant 0.11
rpoC 763133 c.-237G>C upstream_gene_variant 0.11
rpoC 763555 c.186C>T synonymous_variant 0.11
rpoC 763570 c.201G>C synonymous_variant 0.2
rpoC 763578 p.Phe70Tyr missense_variant 0.16
rpoC 763598 p.Arg77Lys missense_variant 0.14
rpoC 763606 c.237C>A synonymous_variant 0.14
rpoC 763615 c.246G>C synonymous_variant 0.16
rpoC 763618 c.249C>T synonymous_variant 0.14
rpoC 763622 p.Ala85Ser missense_variant 0.14
rpoC 763625 p.Lys86Arg missense_variant 0.15
rpoC 763633 c.264T>C synonymous_variant 0.14
rpoC 763642 c.273G>C synonymous_variant 0.16
rpoC 763648 c.279C>T synonymous_variant 0.21
rpoC 763657 p.Glu96Asp missense_variant 0.22
rpoC 763660 c.291T>G synonymous_variant 0.22
rpoC 763666 c.297G>C synonymous_variant 0.21
rpoC 763675 c.306C>G synonymous_variant 0.2
rpoC 763699 c.330G>T synonymous_variant 0.19
rpoC 763708 c.339G>C synonymous_variant 0.16
rpoC 763714 c.345G>C synonymous_variant 0.13
rpoC 763729 c.360G>C synonymous_variant 0.13
rpoC 763732 c.363C>G synonymous_variant 0.12
rpoC 763735 c.366G>C synonymous_variant 0.12
rpoC 763744 c.375G>C synonymous_variant 0.13
rpoC 763751 p.Ile128Val missense_variant 0.13
rpoC 763765 c.396T>C synonymous_variant 0.13
rpoC 763772 p.Val135Met missense_variant 0.13
rpoC 763781 p.Ser138Glu missense_variant 0.14
rpoC 764359 c.990C>G synonymous_variant 0.11
rpoC 764371 c.1002G>C synonymous_variant 0.11
rpoC 764424 p.Asn352Thr missense_variant 0.1
rpoC 764431 c.1062G>C synonymous_variant 0.11
rpoC 764435 c.1066A>C synonymous_variant 0.11
rpoC 764441 p.Ile358Leu missense_variant 0.11
rpoC 764446 p.Asp359Glu missense_variant 0.11
rpoC 764452 c.1083T>C synonymous_variant 0.11
rpoC 764455 c.1086G>C synonymous_variant 0.12
rpoC 764458 c.1089G>C synonymous_variant 0.13
rpoC 764461 c.1092A>G synonymous_variant 0.13
rpoC 764485 c.1116G>C synonymous_variant 0.22
rpoC 764491 c.1122G>T synonymous_variant 0.26
rpoC 764503 c.1134G>T synonymous_variant 0.32
rpoC 764509 c.1140G>C synonymous_variant 0.32
rpoC 764512 c.1143G>C synonymous_variant 0.3
rpoC 764521 c.1152T>C synonymous_variant 0.37
rpoC 764536 c.1167G>C synonymous_variant 0.44
rpoC 764543 p.Thr392Ala missense_variant 0.41
rpoC 764548 c.1179G>T synonymous_variant 0.42
rpoC 764551 c.1182G>C synonymous_variant 0.47
rpoC 764573 p.Leu402Ile missense_variant 0.36
rpoC 764578 c.1209C>G synonymous_variant 0.36
rpoC 764581 c.1212T>C synonymous_variant 0.36
rpoC 764582 p.Leu405Met missense_variant 0.36
rpoC 764602 c.1233C>T synonymous_variant 0.48
rpoC 764605 c.1236G>T synonymous_variant 0.5
rpoC 764611 c.1242G>T synonymous_variant 0.5
rpoC 764632 c.1263T>A synonymous_variant 0.44
rpoC 764647 c.1278C>T synonymous_variant 0.38
rpoC 764650 c.1281G>T synonymous_variant 0.36
rpoC 764653 c.1284G>C synonymous_variant 0.36
rpoC 764656 c.1287C>G synonymous_variant 0.36
rpoC 764662 c.1293G>C synonymous_variant 0.38
rpoC 764677 c.1308C>G synonymous_variant 0.33
rpoC 764678 p.Lys437Gln missense_variant 0.32
rpoC 764683 c.1314G>C synonymous_variant 0.3
rpoC 764692 c.1323C>T synonymous_variant 0.3
rpoC 764705 p.Leu446Ala missense_variant 0.25
rpoC 764713 c.1344G>C synonymous_variant 0.28
rpoC 764731 c.1362G>C synonymous_variant 0.25
rpoC 764737 c.1368G>C synonymous_variant 0.12
rpoC 765150 p.Gly594Glu missense_variant 1.0
mmpL5 775639 p.Ile948Val missense_variant 1.0
rpsL 781395 c.-165T>C upstream_gene_variant 1.0
fbiC 1304204 p.Ala425Val missense_variant 0.22
rrs 1471659 n.-187C>T upstream_gene_variant 1.0
rrs 1471675 n.-171G>C upstream_gene_variant 0.12
rrs 1472068 n.223T>G non_coding_transcript_exon_variant 0.18
rrs 1472075 n.230A>G non_coding_transcript_exon_variant 0.25
rrs 1472078 n.233C>T non_coding_transcript_exon_variant 0.43
rrs 1472108 n.263C>T non_coding_transcript_exon_variant 0.74
rrs 1472122 n.277G>T non_coding_transcript_exon_variant 0.73
rrs 1472123 n.278A>T non_coding_transcript_exon_variant 0.73
rrs 1472124 n.279C>T non_coding_transcript_exon_variant 0.73
rrs 1472150 n.305T>A non_coding_transcript_exon_variant 0.84
rrs 1472155 n.310C>T non_coding_transcript_exon_variant 0.77
rrs 1472160 n.315C>T non_coding_transcript_exon_variant 0.76
rrs 1472225 n.380C>A non_coding_transcript_exon_variant 0.76
rrs 1472251 n.406G>A non_coding_transcript_exon_variant 0.81
rrs 1472258 n.413A>G non_coding_transcript_exon_variant 0.57
rrs 1472259 n.414C>A non_coding_transcript_exon_variant 0.55
rrs 1472379 n.534T>C non_coding_transcript_exon_variant 0.4
rrs 1472400 n.555C>T non_coding_transcript_exon_variant 0.4
rrs 1472412 n.567A>G non_coding_transcript_exon_variant 0.5
rrs 1472416 n.571C>T non_coding_transcript_exon_variant 0.5
rrs 1472422 n.577T>C non_coding_transcript_exon_variant 0.5
rrs 1472427 n.582T>G non_coding_transcript_exon_variant 0.5
rrs 1472435 n.590T>C non_coding_transcript_exon_variant 0.67
rrs 1472436 n.591G>T non_coding_transcript_exon_variant 0.67
rrs 1472437 n.592T>G non_coding_transcript_exon_variant 1.0
rrs 1472438 n.593T>C non_coding_transcript_exon_variant 1.0
rrs 1472448 n.603T>C non_coding_transcript_exon_variant 1.0
rrs 1472449 n.604C>T non_coding_transcript_exon_variant 1.0
rrs 1472450 n.605A>C non_coding_transcript_exon_variant 1.0
rrs 1472451 n.606C>T non_coding_transcript_exon_variant 1.0
rrs 1472462 n.617T>G non_coding_transcript_exon_variant 1.0
rrs 1472464 n.619A>G non_coding_transcript_exon_variant 1.0
rrs 1472473 n.628G>T non_coding_transcript_exon_variant 1.0
rrs 1472474 n.629C>G non_coding_transcript_exon_variant 1.0
rrs 1472476 n.631A>G non_coding_transcript_exon_variant 1.0
rrs 1472484 n.639A>T non_coding_transcript_exon_variant 0.67
rrs 1472489 n.644A>T non_coding_transcript_exon_variant 0.4
rrs 1472494 n.649A>G non_coding_transcript_exon_variant 0.6
rrs 1472496 n.651T>G non_coding_transcript_exon_variant 0.5
rrs 1472498 n.653C>T non_coding_transcript_exon_variant 0.62
rrs 1472507 n.662C>G non_coding_transcript_exon_variant 0.15
rrs 1472513 n.668T>C non_coding_transcript_exon_variant 0.47
rrs 1472517 n.672T>A non_coding_transcript_exon_variant 0.18
rrs 1472518 n.673G>T non_coding_transcript_exon_variant 0.17
rrs 1472530 n.685G>A non_coding_transcript_exon_variant 0.23
rrs 1472537 n.692C>T non_coding_transcript_exon_variant 0.24
rrs 1472544 n.699C>A non_coding_transcript_exon_variant 0.15
rrs 1472545 n.700A>T non_coding_transcript_exon_variant 0.14
rrs 1472549 n.704G>A non_coding_transcript_exon_variant 0.59
rrs 1472566 n.721G>A non_coding_transcript_exon_variant 0.13
rrs 1472571 n.726G>C non_coding_transcript_exon_variant 0.21
rrs 1472579 n.734G>C non_coding_transcript_exon_variant 0.14
rrs 1472580 n.735C>T non_coding_transcript_exon_variant 0.12
rrs 1472581 n.736A>C non_coding_transcript_exon_variant 0.59
rrs 1472584 n.739A>T non_coding_transcript_exon_variant 0.43
rrs 1472598 n.753A>C non_coding_transcript_exon_variant 0.23
rrs 1472599 n.754G>T non_coding_transcript_exon_variant 0.15
rrs 1472616 n.771G>A non_coding_transcript_exon_variant 0.13
rrs 1472647 n.802C>T non_coding_transcript_exon_variant 0.58
rrs 1472655 n.810G>A non_coding_transcript_exon_variant 0.67
rrs 1472655 n.810G>T non_coding_transcript_exon_variant 0.83
rrs 1472658 n.813G>A non_coding_transcript_exon_variant 0.21
rrs 1472660 n.815T>C non_coding_transcript_exon_variant 0.62
rrs 1472661 n.816A>G non_coding_transcript_exon_variant 0.17
rrs 1472665 n.820G>A non_coding_transcript_exon_variant 0.12
rrs 1472686 n.841G>T non_coding_transcript_exon_variant 0.62
rrs 1472687 n.842A>T non_coding_transcript_exon_variant 0.73
rrs 1472690 n.845C>T non_coding_transcript_exon_variant 0.71
rrs 1472692 n.847T>C non_coding_transcript_exon_variant 0.59
rrs 1472695 n.850C>T non_coding_transcript_exon_variant 0.12
rrs 1472697 n.852T>C non_coding_transcript_exon_variant 0.21
rrs 1472700 n.855C>T non_coding_transcript_exon_variant 0.12
rrs 1472707 n.862A>T non_coding_transcript_exon_variant 0.53
rrs 1472713 n.868T>C non_coding_transcript_exon_variant 0.2
rrs 1472714 n.869A>G non_coding_transcript_exon_variant 0.59
rrs 1472716 n.871C>T non_coding_transcript_exon_variant 0.23
rrs 1472742 n.897C>T non_coding_transcript_exon_variant 0.21
rrs 1472744 n.899A>G non_coding_transcript_exon_variant 0.21
rrs 1472767 n.922G>A non_coding_transcript_exon_variant 0.14
rrs 1472790 n.945T>C non_coding_transcript_exon_variant 0.35
rrs 1472824 n.979T>A non_coding_transcript_exon_variant 0.36
rrs 1472825 n.980G>A non_coding_transcript_exon_variant 0.36
rrs 1472828 n.983T>C non_coding_transcript_exon_variant 0.31
rrs 1472895 n.1050C>T non_coding_transcript_exon_variant 0.56
rrs 1472952 n.1107T>C non_coding_transcript_exon_variant 0.11
rrs 1472954 n.1109T>C non_coding_transcript_exon_variant 0.6
rrs 1472955 n.1110C>T non_coding_transcript_exon_variant 0.11
rrs 1472956 n.1111T>C non_coding_transcript_exon_variant 0.71
rrs 1472957 n.1112C>T non_coding_transcript_exon_variant 0.81
rrs 1472973 n.1128A>G non_coding_transcript_exon_variant 0.71
rrs 1472973 n.1128A>T non_coding_transcript_exon_variant 0.53
rrs 1472987 n.1142G>A non_coding_transcript_exon_variant 0.2
rrs 1472990 n.1145A>G non_coding_transcript_exon_variant 0.72
rrs 1472992 n.1147A>G non_coding_transcript_exon_variant 0.6
rrs 1473005 n.1160C>T non_coding_transcript_exon_variant 0.65
rrs 1473035 n.1190G>A non_coding_transcript_exon_variant 0.89
rrs 1473055 n.1210C>T non_coding_transcript_exon_variant 0.79
rrs 1473056 n.1211A>T non_coding_transcript_exon_variant 0.87
rrs 1473066 n.1221A>G non_coding_transcript_exon_variant 0.86
rrs 1473080 n.1235C>T non_coding_transcript_exon_variant 0.75
rrs 1473081 n.1236C>T non_coding_transcript_exon_variant 0.77
rrs 1473088 n.1243A>G non_coding_transcript_exon_variant 0.86
rrs 1473093 n.1248C>T non_coding_transcript_exon_variant 0.85
rrs 1473100 n.1255G>A non_coding_transcript_exon_variant 0.85
rrs 1473101 n.1256C>T non_coding_transcript_exon_variant 0.74
rrs 1473104 n.1259C>T non_coding_transcript_exon_variant 0.85
rrs 1473110 n.1265T>G non_coding_transcript_exon_variant 0.84
rrs 1473111 n.1266A>G non_coding_transcript_exon_variant 0.84
rrs 1473121 n.1276T>C non_coding_transcript_exon_variant 0.85
rrs 1473123 n.1278A>T non_coding_transcript_exon_variant 0.78
rrs 1473130 n.1285G>A non_coding_transcript_exon_variant 0.78
rrs 1473145 n.1300C>T non_coding_transcript_exon_variant 0.89
rrs 1473166 n.1321G>A non_coding_transcript_exon_variant 0.87
rrs 1473172 n.1327T>G non_coding_transcript_exon_variant 0.77
rrs 1473173 n.1328C>T non_coding_transcript_exon_variant 0.78
rrs 1473221 n.1376C>T non_coding_transcript_exon_variant 0.88
rrs 1473252 n.1407T>C non_coding_transcript_exon_variant 0.9
rrs 1473259 n.1414C>T non_coding_transcript_exon_variant 0.91
rrs 1473276 n.1431A>C non_coding_transcript_exon_variant 0.91
rrs 1473277 n.1432G>A non_coding_transcript_exon_variant 0.91
rrs 1473301 n.1456T>G non_coding_transcript_exon_variant 0.86
rrs 1473316 n.1471C>T non_coding_transcript_exon_variant 0.88
rrl 1473384 n.-274A>G upstream_gene_variant 0.4
rrl 1474824 n.1167A>G non_coding_transcript_exon_variant 0.33
rrl 1474830 n.1173A>G non_coding_transcript_exon_variant 0.29
rrl 1474831 n.1174A>T non_coding_transcript_exon_variant 0.29
rrl 1474832 n.1175A>T non_coding_transcript_exon_variant 0.29
rrl 1474864 n.1207C>T non_coding_transcript_exon_variant 0.33
rrl 1475722 n.2065G>T non_coding_transcript_exon_variant 0.38
rrl 1475751 n.2094C>T non_coding_transcript_exon_variant 0.38
rrl 1475752 n.2095C>T non_coding_transcript_exon_variant 0.33
rrl 1475753 n.2096C>G non_coding_transcript_exon_variant 0.33
rrl 1475758 n.2101A>G non_coding_transcript_exon_variant 0.3
rrl 1475760 n.2103C>T non_coding_transcript_exon_variant 0.3
rrl 1475762 n.2105G>T non_coding_transcript_exon_variant 0.33
rrl 1475763 n.2106C>T non_coding_transcript_exon_variant 0.33
rrl 1475764 n.2107A>T non_coding_transcript_exon_variant 0.4
rrl 1475765 n.2108A>T non_coding_transcript_exon_variant 0.33
rrl 1475769 n.2112T>C non_coding_transcript_exon_variant 0.3
rrl 1475775 n.2118G>T non_coding_transcript_exon_variant 0.33
rrl 1475777 n.2120A>T non_coding_transcript_exon_variant 0.2
rrl 1475883 n.2226A>C non_coding_transcript_exon_variant 0.62
rrl 1475884 n.2227A>G non_coding_transcript_exon_variant 0.56
rrl 1475896 n.2239A>G non_coding_transcript_exon_variant 0.44
rrl 1475897 n.2240T>C non_coding_transcript_exon_variant 0.44
rrl 1475898 n.2241A>G non_coding_transcript_exon_variant 0.56
rrl 1475899 n.2242G>A non_coding_transcript_exon_variant 0.56
rrl 1475906 n.2249C>T non_coding_transcript_exon_variant 0.44
rrl 1475916 n.2259C>G non_coding_transcript_exon_variant 0.5
rrl 1476131 n.2474C>T non_coding_transcript_exon_variant 0.18
rrl 1476359 n.2702C>G non_coding_transcript_exon_variant 0.89
rrl 1476381 n.2724G>C non_coding_transcript_exon_variant 0.91
rrl 1476428 n.2771C>T non_coding_transcript_exon_variant 0.88
rrl 1476429 n.2772A>T non_coding_transcript_exon_variant 0.86
rrl 1476466 n.2809C>T non_coding_transcript_exon_variant 0.91
rrl 1476481 n.2824T>C non_coding_transcript_exon_variant 0.87
rrl 1476506 n.2849T>C non_coding_transcript_exon_variant 0.79
rrl 1476513 n.2856G>T non_coding_transcript_exon_variant 0.65
rrl 1476515 n.2858C>T non_coding_transcript_exon_variant 0.44
rrl 1476517 n.2860C>T non_coding_transcript_exon_variant 0.22
rrl 1476524 n.2867C>T non_coding_transcript_exon_variant 0.29
rrl 1476525 n.2868A>G non_coding_transcript_exon_variant 0.44
rrl 1476530 n.2873C>T non_coding_transcript_exon_variant 0.3
rrl 1476536 n.2879G>A non_coding_transcript_exon_variant 0.33
rrl 1476538 n.2881A>G non_coding_transcript_exon_variant 0.2
rrl 1476539 n.2882A>G non_coding_transcript_exon_variant 0.33
rrl 1476540 n.2883C>G non_coding_transcript_exon_variant 0.33
rrl 1476542 n.2885T>C non_coding_transcript_exon_variant 0.22
rrl 1476567 n.2910C>T non_coding_transcript_exon_variant 0.25
rrl 1476584 n.2927C>T non_coding_transcript_exon_variant 0.3
rrl 1476585 n.2928A>G non_coding_transcript_exon_variant 0.3
rrl 1476594 n.2937C>A non_coding_transcript_exon_variant 0.27
rrl 1476603 n.2946G>T non_coding_transcript_exon_variant 0.27
rrl 1476607 n.2950C>T non_coding_transcript_exon_variant 0.18
rrl 1476608 n.2951C>G non_coding_transcript_exon_variant 0.18
rpsA 1834041 p.Lys167Ser missense_variant 0.11
rpsA 1834051 c.510G>A synonymous_variant 0.13
rpsA 1834054 c.513C>G synonymous_variant 0.13
rpsA 1834069 c.528G>C synonymous_variant 0.12
rpsA 1834093 c.552G>C synonymous_variant 0.15
rpsA 1834102 c.561T>C synonymous_variant 0.12
rpsA 1834195 c.654G>C synonymous_variant 0.25
rpsA 1834234 c.693G>C synonymous_variant 0.25
rpsA 1834240 c.699T>C synonymous_variant 0.31
rpsA 1834249 c.708T>C synonymous_variant 0.42
rpsA 1834258 c.717G>A synonymous_variant 0.43
rpsA 1834261 c.720A>G synonymous_variant 0.43
rpsA 1834264 c.723G>C synonymous_variant 0.45
rpsA 1834294 c.753G>C synonymous_variant 0.47
rpsA 1834298 p.Gln253Glu missense_variant 0.47
rpsA 1834306 c.765T>C synonymous_variant 0.5
rpsA 1834307 p.Asp256Gln missense_variant 0.5
rpsA 1834312 c.771G>A synonymous_variant 0.5
rpsA 1834327 c.786G>T synonymous_variant 0.52
rpsA 1834345 c.804C>T synonymous_variant 0.39
rpsA 1834348 c.807T>C synonymous_variant 0.38
rpsA 1834354 c.813G>C synonymous_variant 0.4
rpsA 1834357 c.816T>C synonymous_variant 0.44
rpsA 1834360 c.819G>C synonymous_variant 0.44
rpsA 1834361 c.820T>C synonymous_variant 0.44
rpsA 1834366 c.825A>C synonymous_variant 0.44
rpsA 1834375 c.834G>C synonymous_variant 0.44
rpsA 1834378 c.837T>C synonymous_variant 0.44
rpsA 1834387 c.846C>T synonymous_variant 0.39
rpsA 1834395 p.Arg285Gln missense_variant 0.21
rpsA 1834397 p.His286Ala missense_variant 0.23
rpsA 1834411 c.870T>C synonymous_variant 0.17
tlyA 1917972 c.33A>G synonymous_variant 1.0
ndh 2103227 c.-185T>C upstream_gene_variant 0.13
PPE35 2169269 c.1344A>G synonymous_variant 0.12
Rv1979c 2223293 c.-129A>G upstream_gene_variant 1.0
kasA 2518961 p.Asp283Asn missense_variant 0.25
ahpC 2726210 c.18T>C synonymous_variant 1.0
folC 2747554 c.45C>T synonymous_variant 0.13
ald 3086788 c.-32T>C upstream_gene_variant 1.0
fbiD 3339550 p.Gly145Arg missense_variant 1.0
fprA 3473874 c.-133C>T upstream_gene_variant 0.11
fprA 3473996 c.-11_-10insA upstream_gene_variant 1.0
Rv3236c 3613090 p.Phe9Leu missense_variant 0.14
fbiA 3641447 p.Thr302Met missense_variant 1.0
rpoA 3877553 p.Glu319Lys missense_variant 1.0
embC 4240223 p.Leu121Met missense_variant 0.13
embC 4240897 c.1035C>G synonymous_variant 1.0
embA 4242643 c.-590C>T upstream_gene_variant 1.0
embC 4242803 p.Val981Leu missense_variant 1.0
embB 4246235 c.-279G>A upstream_gene_variant 0.13
embB 4249408 c.2895G>A synonymous_variant 1.0
whiB6 4338595 c.-75delG upstream_gene_variant 1.0