Run ID: ERR4818259
Sample name:
Date: 01-04-2023 15:27:34
Number of reads: 496337
Percentage reads mapped: 71.28
Strain: lineage4.1.1
Drug-resistance: RR-TB
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
lineage4.1 | Euro-American | T;X;H | None | 1.0 |
lineage4.1.1 | Euro-American (X-type) | X1;X2;X3 | None | 0.99 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|---|---|---|---|---|
rpoB | 761127 | p.Ser441Ala | missense_variant | 0.44 | rifampicin |
rrs | 1472733 | n.888G>A | non_coding_transcript_exon_variant | 0.23 | streptomycin |
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
gyrA | 7585 | p.Ser95Thr | missense_variant | 1.0 |
gyrA | 9304 | p.Gly668Asp | missense_variant | 1.0 |
rpoB | 761027 | c.1221A>G | synonymous_variant | 0.38 |
rpoB | 761030 | c.1224G>C | synonymous_variant | 0.43 |
rpoB | 761037 | c.1231T>C | synonymous_variant | 0.5 |
rpoB | 761051 | c.1245G>C | synonymous_variant | 0.5 |
rpoB | 761054 | c.1248G>C | synonymous_variant | 0.5 |
rpoB | 761057 | c.1251G>C | synonymous_variant | 0.5 |
rpoB | 761060 | c.1254C>G | synonymous_variant | 0.53 |
rpoB | 761084 | c.1278C>A | synonymous_variant | 0.53 |
rpoB | 761088 | c.1282_1283delAGinsTC | synonymous_variant | 0.53 |
rpoB | 761096 | c.1290G>C | synonymous_variant | 0.59 |
rpoB | 761097 | c.1291_1293delAGCinsTCG | synonymous_variant | 0.59 |
rpoB | 761102 | c.1296A>G | synonymous_variant | 0.56 |
rpoB | 761132 | c.1326G>C | synonymous_variant | 0.44 |
rpoB | 761133 | c.1327T>C | synonymous_variant | 0.44 |
rpoB | 761150 | c.1344A>C | synonymous_variant | 0.38 |
rpoB | 761159 | c.1353G>C | synonymous_variant | 0.36 |
rpoB | 761165 | c.1359G>C | synonymous_variant | 0.32 |
rpoB | 761174 | c.1368T>C | synonymous_variant | 0.19 |
rpoB | 762114 | p.Ile770Val | missense_variant | 0.21 |
rpoB | 762125 | c.2319G>A | synonymous_variant | 0.21 |
rpoB | 762126 | p.Val774Ser | missense_variant | 0.21 |
rpoB | 762143 | c.2337T>C | synonymous_variant | 0.27 |
rpoB | 762149 | c.2343G>C | synonymous_variant | 0.29 |
rpoB | 762156 | p.Val784Ile | missense_variant | 0.25 |
rpoB | 762167 | c.2361T>C | synonymous_variant | 0.27 |
rpoB | 762176 | c.2370T>C | synonymous_variant | 0.27 |
rpoB | 762177 | p.Arg791Thr | missense_variant | 0.27 |
rpoB | 762181 | p.Asp792Ala | missense_variant | 0.27 |
rpoB | 762185 | c.2379G>C | synonymous_variant | 0.27 |
rpoB | 762194 | c.2388G>C | synonymous_variant | 0.27 |
rpoB | 762212 | c.2406G>C | synonymous_variant | 0.25 |
rpoB | 762254 | c.2448T>C | synonymous_variant | 0.22 |
rpoB | 762266 | c.2460T>C | synonymous_variant | 0.2 |
rpoB | 762284 | c.2478G>C | synonymous_variant | 0.17 |
rpoB | 762293 | c.2487T>C | synonymous_variant | 0.18 |
rpoC | 762410 | c.-960T>C | upstream_gene_variant | 0.17 |
rpoC | 763031 | c.-339T>C | upstream_gene_variant | 0.15 |
rpoB | 763038 | p.Thr1078Ala | missense_variant | 0.12 |
rpoC | 763043 | c.-327G>C | upstream_gene_variant | 0.12 |
rpoC | 763053 | c.-317T>C | upstream_gene_variant | 0.12 |
rpoC | 763070 | c.-300T>C | upstream_gene_variant | 0.12 |
rpoB | 763077 | p.Val1091Thr | missense_variant | 0.12 |
rpoC | 763103 | c.-267G>C | upstream_gene_variant | 0.16 |
rpoC | 763115 | c.-255T>C | upstream_gene_variant | 0.12 |
rpoB | 763119 | p.Asn1105Asp | missense_variant | 0.11 |
rpoC | 763127 | c.-243G>C | upstream_gene_variant | 0.11 |
rpoC | 763133 | c.-237G>C | upstream_gene_variant | 0.11 |
rpoC | 763555 | c.186C>T | synonymous_variant | 0.11 |
rpoC | 763570 | c.201G>C | synonymous_variant | 0.2 |
rpoC | 763578 | p.Phe70Tyr | missense_variant | 0.16 |
rpoC | 763598 | p.Arg77Lys | missense_variant | 0.14 |
rpoC | 763606 | c.237C>A | synonymous_variant | 0.14 |
rpoC | 763615 | c.246G>C | synonymous_variant | 0.16 |
rpoC | 763618 | c.249C>T | synonymous_variant | 0.14 |
rpoC | 763622 | p.Ala85Ser | missense_variant | 0.14 |
rpoC | 763625 | p.Lys86Arg | missense_variant | 0.15 |
rpoC | 763633 | c.264T>C | synonymous_variant | 0.14 |
rpoC | 763642 | c.273G>C | synonymous_variant | 0.16 |
rpoC | 763648 | c.279C>T | synonymous_variant | 0.21 |
rpoC | 763657 | p.Glu96Asp | missense_variant | 0.22 |
rpoC | 763660 | c.291T>G | synonymous_variant | 0.22 |
rpoC | 763666 | c.297G>C | synonymous_variant | 0.21 |
rpoC | 763675 | c.306C>G | synonymous_variant | 0.2 |
rpoC | 763699 | c.330G>T | synonymous_variant | 0.19 |
rpoC | 763708 | c.339G>C | synonymous_variant | 0.16 |
rpoC | 763714 | c.345G>C | synonymous_variant | 0.13 |
rpoC | 763729 | c.360G>C | synonymous_variant | 0.13 |
rpoC | 763732 | c.363C>G | synonymous_variant | 0.12 |
rpoC | 763735 | c.366G>C | synonymous_variant | 0.12 |
rpoC | 763744 | c.375G>C | synonymous_variant | 0.13 |
rpoC | 763751 | p.Ile128Val | missense_variant | 0.13 |
rpoC | 763765 | c.396T>C | synonymous_variant | 0.13 |
rpoC | 763772 | p.Val135Met | missense_variant | 0.13 |
rpoC | 763781 | p.Ser138Glu | missense_variant | 0.14 |
rpoC | 764359 | c.990C>G | synonymous_variant | 0.11 |
rpoC | 764371 | c.1002G>C | synonymous_variant | 0.11 |
rpoC | 764424 | p.Asn352Thr | missense_variant | 0.1 |
rpoC | 764431 | c.1062G>C | synonymous_variant | 0.11 |
rpoC | 764435 | c.1066A>C | synonymous_variant | 0.11 |
rpoC | 764441 | p.Ile358Leu | missense_variant | 0.11 |
rpoC | 764446 | p.Asp359Glu | missense_variant | 0.11 |
rpoC | 764452 | c.1083T>C | synonymous_variant | 0.11 |
rpoC | 764455 | c.1086G>C | synonymous_variant | 0.12 |
rpoC | 764458 | c.1089G>C | synonymous_variant | 0.13 |
rpoC | 764461 | c.1092A>G | synonymous_variant | 0.13 |
rpoC | 764485 | c.1116G>C | synonymous_variant | 0.22 |
rpoC | 764491 | c.1122G>T | synonymous_variant | 0.26 |
rpoC | 764503 | c.1134G>T | synonymous_variant | 0.32 |
rpoC | 764509 | c.1140G>C | synonymous_variant | 0.32 |
rpoC | 764512 | c.1143G>C | synonymous_variant | 0.3 |
rpoC | 764521 | c.1152T>C | synonymous_variant | 0.37 |
rpoC | 764536 | c.1167G>C | synonymous_variant | 0.44 |
rpoC | 764543 | p.Thr392Ala | missense_variant | 0.41 |
rpoC | 764548 | c.1179G>T | synonymous_variant | 0.42 |
rpoC | 764551 | c.1182G>C | synonymous_variant | 0.47 |
rpoC | 764573 | p.Leu402Ile | missense_variant | 0.36 |
rpoC | 764578 | c.1209C>G | synonymous_variant | 0.36 |
rpoC | 764581 | c.1212T>C | synonymous_variant | 0.36 |
rpoC | 764582 | p.Leu405Met | missense_variant | 0.36 |
rpoC | 764602 | c.1233C>T | synonymous_variant | 0.48 |
rpoC | 764605 | c.1236G>T | synonymous_variant | 0.5 |
rpoC | 764611 | c.1242G>T | synonymous_variant | 0.5 |
rpoC | 764632 | c.1263T>A | synonymous_variant | 0.44 |
rpoC | 764647 | c.1278C>T | synonymous_variant | 0.38 |
rpoC | 764650 | c.1281G>T | synonymous_variant | 0.36 |
rpoC | 764653 | c.1284G>C | synonymous_variant | 0.36 |
rpoC | 764656 | c.1287C>G | synonymous_variant | 0.36 |
rpoC | 764662 | c.1293G>C | synonymous_variant | 0.38 |
rpoC | 764677 | c.1308C>G | synonymous_variant | 0.33 |
rpoC | 764678 | p.Lys437Gln | missense_variant | 0.32 |
rpoC | 764683 | c.1314G>C | synonymous_variant | 0.3 |
rpoC | 764692 | c.1323C>T | synonymous_variant | 0.3 |
rpoC | 764705 | p.Leu446Ala | missense_variant | 0.25 |
rpoC | 764713 | c.1344G>C | synonymous_variant | 0.28 |
rpoC | 764731 | c.1362G>C | synonymous_variant | 0.25 |
rpoC | 764737 | c.1368G>C | synonymous_variant | 0.12 |
rpoC | 765150 | p.Gly594Glu | missense_variant | 1.0 |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 1.0 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
fbiC | 1304204 | p.Ala425Val | missense_variant | 0.22 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
rrs | 1471675 | n.-171G>C | upstream_gene_variant | 0.12 |
rrs | 1472068 | n.223T>G | non_coding_transcript_exon_variant | 0.18 |
rrs | 1472075 | n.230A>G | non_coding_transcript_exon_variant | 0.25 |
rrs | 1472078 | n.233C>T | non_coding_transcript_exon_variant | 0.43 |
rrs | 1472108 | n.263C>T | non_coding_transcript_exon_variant | 0.74 |
rrs | 1472122 | n.277G>T | non_coding_transcript_exon_variant | 0.73 |
rrs | 1472123 | n.278A>T | non_coding_transcript_exon_variant | 0.73 |
rrs | 1472124 | n.279C>T | non_coding_transcript_exon_variant | 0.73 |
rrs | 1472150 | n.305T>A | non_coding_transcript_exon_variant | 0.84 |
rrs | 1472155 | n.310C>T | non_coding_transcript_exon_variant | 0.77 |
rrs | 1472160 | n.315C>T | non_coding_transcript_exon_variant | 0.76 |
rrs | 1472225 | n.380C>A | non_coding_transcript_exon_variant | 0.76 |
rrs | 1472251 | n.406G>A | non_coding_transcript_exon_variant | 0.81 |
rrs | 1472258 | n.413A>G | non_coding_transcript_exon_variant | 0.57 |
rrs | 1472259 | n.414C>A | non_coding_transcript_exon_variant | 0.55 |
rrs | 1472379 | n.534T>C | non_coding_transcript_exon_variant | 0.4 |
rrs | 1472400 | n.555C>T | non_coding_transcript_exon_variant | 0.4 |
rrs | 1472412 | n.567A>G | non_coding_transcript_exon_variant | 0.5 |
rrs | 1472416 | n.571C>T | non_coding_transcript_exon_variant | 0.5 |
rrs | 1472422 | n.577T>C | non_coding_transcript_exon_variant | 0.5 |
rrs | 1472427 | n.582T>G | non_coding_transcript_exon_variant | 0.5 |
rrs | 1472435 | n.590T>C | non_coding_transcript_exon_variant | 0.67 |
rrs | 1472436 | n.591G>T | non_coding_transcript_exon_variant | 0.67 |
rrs | 1472437 | n.592T>G | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472438 | n.593T>C | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472448 | n.603T>C | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472449 | n.604C>T | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472450 | n.605A>C | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472451 | n.606C>T | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472462 | n.617T>G | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472464 | n.619A>G | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472473 | n.628G>T | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472474 | n.629C>G | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472476 | n.631A>G | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472484 | n.639A>T | non_coding_transcript_exon_variant | 0.67 |
rrs | 1472489 | n.644A>T | non_coding_transcript_exon_variant | 0.4 |
rrs | 1472494 | n.649A>G | non_coding_transcript_exon_variant | 0.6 |
rrs | 1472496 | n.651T>G | non_coding_transcript_exon_variant | 0.5 |
rrs | 1472498 | n.653C>T | non_coding_transcript_exon_variant | 0.62 |
rrs | 1472507 | n.662C>G | non_coding_transcript_exon_variant | 0.15 |
rrs | 1472513 | n.668T>C | non_coding_transcript_exon_variant | 0.47 |
rrs | 1472517 | n.672T>A | non_coding_transcript_exon_variant | 0.18 |
rrs | 1472518 | n.673G>T | non_coding_transcript_exon_variant | 0.17 |
rrs | 1472530 | n.685G>A | non_coding_transcript_exon_variant | 0.23 |
rrs | 1472537 | n.692C>T | non_coding_transcript_exon_variant | 0.24 |
rrs | 1472544 | n.699C>A | non_coding_transcript_exon_variant | 0.15 |
rrs | 1472545 | n.700A>T | non_coding_transcript_exon_variant | 0.14 |
rrs | 1472549 | n.704G>A | non_coding_transcript_exon_variant | 0.59 |
rrs | 1472566 | n.721G>A | non_coding_transcript_exon_variant | 0.13 |
rrs | 1472571 | n.726G>C | non_coding_transcript_exon_variant | 0.21 |
rrs | 1472579 | n.734G>C | non_coding_transcript_exon_variant | 0.14 |
rrs | 1472580 | n.735C>T | non_coding_transcript_exon_variant | 0.12 |
rrs | 1472581 | n.736A>C | non_coding_transcript_exon_variant | 0.59 |
rrs | 1472584 | n.739A>T | non_coding_transcript_exon_variant | 0.43 |
rrs | 1472598 | n.753A>C | non_coding_transcript_exon_variant | 0.23 |
rrs | 1472599 | n.754G>T | non_coding_transcript_exon_variant | 0.15 |
rrs | 1472616 | n.771G>A | non_coding_transcript_exon_variant | 0.13 |
rrs | 1472647 | n.802C>T | non_coding_transcript_exon_variant | 0.58 |
rrs | 1472655 | n.810G>A | non_coding_transcript_exon_variant | 0.67 |
rrs | 1472655 | n.810G>T | non_coding_transcript_exon_variant | 0.83 |
rrs | 1472658 | n.813G>A | non_coding_transcript_exon_variant | 0.21 |
rrs | 1472660 | n.815T>C | non_coding_transcript_exon_variant | 0.62 |
rrs | 1472661 | n.816A>G | non_coding_transcript_exon_variant | 0.17 |
rrs | 1472665 | n.820G>A | non_coding_transcript_exon_variant | 0.12 |
rrs | 1472686 | n.841G>T | non_coding_transcript_exon_variant | 0.62 |
rrs | 1472687 | n.842A>T | non_coding_transcript_exon_variant | 0.73 |
rrs | 1472690 | n.845C>T | non_coding_transcript_exon_variant | 0.71 |
rrs | 1472692 | n.847T>C | non_coding_transcript_exon_variant | 0.59 |
rrs | 1472695 | n.850C>T | non_coding_transcript_exon_variant | 0.12 |
rrs | 1472697 | n.852T>C | non_coding_transcript_exon_variant | 0.21 |
rrs | 1472700 | n.855C>T | non_coding_transcript_exon_variant | 0.12 |
rrs | 1472707 | n.862A>T | non_coding_transcript_exon_variant | 0.53 |
rrs | 1472713 | n.868T>C | non_coding_transcript_exon_variant | 0.2 |
rrs | 1472714 | n.869A>G | non_coding_transcript_exon_variant | 0.59 |
rrs | 1472716 | n.871C>T | non_coding_transcript_exon_variant | 0.23 |
rrs | 1472742 | n.897C>T | non_coding_transcript_exon_variant | 0.21 |
rrs | 1472744 | n.899A>G | non_coding_transcript_exon_variant | 0.21 |
rrs | 1472767 | n.922G>A | non_coding_transcript_exon_variant | 0.14 |
rrs | 1472790 | n.945T>C | non_coding_transcript_exon_variant | 0.35 |
rrs | 1472824 | n.979T>A | non_coding_transcript_exon_variant | 0.36 |
rrs | 1472825 | n.980G>A | non_coding_transcript_exon_variant | 0.36 |
rrs | 1472828 | n.983T>C | non_coding_transcript_exon_variant | 0.31 |
rrs | 1472895 | n.1050C>T | non_coding_transcript_exon_variant | 0.56 |
rrs | 1472952 | n.1107T>C | non_coding_transcript_exon_variant | 0.11 |
rrs | 1472954 | n.1109T>C | non_coding_transcript_exon_variant | 0.6 |
rrs | 1472955 | n.1110C>T | non_coding_transcript_exon_variant | 0.11 |
rrs | 1472956 | n.1111T>C | non_coding_transcript_exon_variant | 0.71 |
rrs | 1472957 | n.1112C>T | non_coding_transcript_exon_variant | 0.81 |
rrs | 1472973 | n.1128A>G | non_coding_transcript_exon_variant | 0.71 |
rrs | 1472973 | n.1128A>T | non_coding_transcript_exon_variant | 0.53 |
rrs | 1472987 | n.1142G>A | non_coding_transcript_exon_variant | 0.2 |
rrs | 1472990 | n.1145A>G | non_coding_transcript_exon_variant | 0.72 |
rrs | 1472992 | n.1147A>G | non_coding_transcript_exon_variant | 0.6 |
rrs | 1473005 | n.1160C>T | non_coding_transcript_exon_variant | 0.65 |
rrs | 1473035 | n.1190G>A | non_coding_transcript_exon_variant | 0.89 |
rrs | 1473055 | n.1210C>T | non_coding_transcript_exon_variant | 0.79 |
rrs | 1473056 | n.1211A>T | non_coding_transcript_exon_variant | 0.87 |
rrs | 1473066 | n.1221A>G | non_coding_transcript_exon_variant | 0.86 |
rrs | 1473080 | n.1235C>T | non_coding_transcript_exon_variant | 0.75 |
rrs | 1473081 | n.1236C>T | non_coding_transcript_exon_variant | 0.77 |
rrs | 1473088 | n.1243A>G | non_coding_transcript_exon_variant | 0.86 |
rrs | 1473093 | n.1248C>T | non_coding_transcript_exon_variant | 0.85 |
rrs | 1473100 | n.1255G>A | non_coding_transcript_exon_variant | 0.85 |
rrs | 1473101 | n.1256C>T | non_coding_transcript_exon_variant | 0.74 |
rrs | 1473104 | n.1259C>T | non_coding_transcript_exon_variant | 0.85 |
rrs | 1473110 | n.1265T>G | non_coding_transcript_exon_variant | 0.84 |
rrs | 1473111 | n.1266A>G | non_coding_transcript_exon_variant | 0.84 |
rrs | 1473121 | n.1276T>C | non_coding_transcript_exon_variant | 0.85 |
rrs | 1473123 | n.1278A>T | non_coding_transcript_exon_variant | 0.78 |
rrs | 1473130 | n.1285G>A | non_coding_transcript_exon_variant | 0.78 |
rrs | 1473145 | n.1300C>T | non_coding_transcript_exon_variant | 0.89 |
rrs | 1473166 | n.1321G>A | non_coding_transcript_exon_variant | 0.87 |
rrs | 1473172 | n.1327T>G | non_coding_transcript_exon_variant | 0.77 |
rrs | 1473173 | n.1328C>T | non_coding_transcript_exon_variant | 0.78 |
rrs | 1473221 | n.1376C>T | non_coding_transcript_exon_variant | 0.88 |
rrs | 1473252 | n.1407T>C | non_coding_transcript_exon_variant | 0.9 |
rrs | 1473259 | n.1414C>T | non_coding_transcript_exon_variant | 0.91 |
rrs | 1473276 | n.1431A>C | non_coding_transcript_exon_variant | 0.91 |
rrs | 1473277 | n.1432G>A | non_coding_transcript_exon_variant | 0.91 |
rrs | 1473301 | n.1456T>G | non_coding_transcript_exon_variant | 0.86 |
rrs | 1473316 | n.1471C>T | non_coding_transcript_exon_variant | 0.88 |
rrl | 1473384 | n.-274A>G | upstream_gene_variant | 0.4 |
rrl | 1474824 | n.1167A>G | non_coding_transcript_exon_variant | 0.33 |
rrl | 1474830 | n.1173A>G | non_coding_transcript_exon_variant | 0.29 |
rrl | 1474831 | n.1174A>T | non_coding_transcript_exon_variant | 0.29 |
rrl | 1474832 | n.1175A>T | non_coding_transcript_exon_variant | 0.29 |
rrl | 1474864 | n.1207C>T | non_coding_transcript_exon_variant | 0.33 |
rrl | 1475722 | n.2065G>T | non_coding_transcript_exon_variant | 0.38 |
rrl | 1475751 | n.2094C>T | non_coding_transcript_exon_variant | 0.38 |
rrl | 1475752 | n.2095C>T | non_coding_transcript_exon_variant | 0.33 |
rrl | 1475753 | n.2096C>G | non_coding_transcript_exon_variant | 0.33 |
rrl | 1475758 | n.2101A>G | non_coding_transcript_exon_variant | 0.3 |
rrl | 1475760 | n.2103C>T | non_coding_transcript_exon_variant | 0.3 |
rrl | 1475762 | n.2105G>T | non_coding_transcript_exon_variant | 0.33 |
rrl | 1475763 | n.2106C>T | non_coding_transcript_exon_variant | 0.33 |
rrl | 1475764 | n.2107A>T | non_coding_transcript_exon_variant | 0.4 |
rrl | 1475765 | n.2108A>T | non_coding_transcript_exon_variant | 0.33 |
rrl | 1475769 | n.2112T>C | non_coding_transcript_exon_variant | 0.3 |
rrl | 1475775 | n.2118G>T | non_coding_transcript_exon_variant | 0.33 |
rrl | 1475777 | n.2120A>T | non_coding_transcript_exon_variant | 0.2 |
rrl | 1475883 | n.2226A>C | non_coding_transcript_exon_variant | 0.62 |
rrl | 1475884 | n.2227A>G | non_coding_transcript_exon_variant | 0.56 |
rrl | 1475896 | n.2239A>G | non_coding_transcript_exon_variant | 0.44 |
rrl | 1475897 | n.2240T>C | non_coding_transcript_exon_variant | 0.44 |
rrl | 1475898 | n.2241A>G | non_coding_transcript_exon_variant | 0.56 |
rrl | 1475899 | n.2242G>A | non_coding_transcript_exon_variant | 0.56 |
rrl | 1475906 | n.2249C>T | non_coding_transcript_exon_variant | 0.44 |
rrl | 1475916 | n.2259C>G | non_coding_transcript_exon_variant | 0.5 |
rrl | 1476131 | n.2474C>T | non_coding_transcript_exon_variant | 0.18 |
rrl | 1476359 | n.2702C>G | non_coding_transcript_exon_variant | 0.89 |
rrl | 1476381 | n.2724G>C | non_coding_transcript_exon_variant | 0.91 |
rrl | 1476428 | n.2771C>T | non_coding_transcript_exon_variant | 0.88 |
rrl | 1476429 | n.2772A>T | non_coding_transcript_exon_variant | 0.86 |
rrl | 1476466 | n.2809C>T | non_coding_transcript_exon_variant | 0.91 |
rrl | 1476481 | n.2824T>C | non_coding_transcript_exon_variant | 0.87 |
rrl | 1476506 | n.2849T>C | non_coding_transcript_exon_variant | 0.79 |
rrl | 1476513 | n.2856G>T | non_coding_transcript_exon_variant | 0.65 |
rrl | 1476515 | n.2858C>T | non_coding_transcript_exon_variant | 0.44 |
rrl | 1476517 | n.2860C>T | non_coding_transcript_exon_variant | 0.22 |
rrl | 1476524 | n.2867C>T | non_coding_transcript_exon_variant | 0.29 |
rrl | 1476525 | n.2868A>G | non_coding_transcript_exon_variant | 0.44 |
rrl | 1476530 | n.2873C>T | non_coding_transcript_exon_variant | 0.3 |
rrl | 1476536 | n.2879G>A | non_coding_transcript_exon_variant | 0.33 |
rrl | 1476538 | n.2881A>G | non_coding_transcript_exon_variant | 0.2 |
rrl | 1476539 | n.2882A>G | non_coding_transcript_exon_variant | 0.33 |
rrl | 1476540 | n.2883C>G | non_coding_transcript_exon_variant | 0.33 |
rrl | 1476542 | n.2885T>C | non_coding_transcript_exon_variant | 0.22 |
rrl | 1476567 | n.2910C>T | non_coding_transcript_exon_variant | 0.25 |
rrl | 1476584 | n.2927C>T | non_coding_transcript_exon_variant | 0.3 |
rrl | 1476585 | n.2928A>G | non_coding_transcript_exon_variant | 0.3 |
rrl | 1476594 | n.2937C>A | non_coding_transcript_exon_variant | 0.27 |
rrl | 1476603 | n.2946G>T | non_coding_transcript_exon_variant | 0.27 |
rrl | 1476607 | n.2950C>T | non_coding_transcript_exon_variant | 0.18 |
rrl | 1476608 | n.2951C>G | non_coding_transcript_exon_variant | 0.18 |
rpsA | 1834041 | p.Lys167Ser | missense_variant | 0.11 |
rpsA | 1834051 | c.510G>A | synonymous_variant | 0.13 |
rpsA | 1834054 | c.513C>G | synonymous_variant | 0.13 |
rpsA | 1834069 | c.528G>C | synonymous_variant | 0.12 |
rpsA | 1834093 | c.552G>C | synonymous_variant | 0.15 |
rpsA | 1834102 | c.561T>C | synonymous_variant | 0.12 |
rpsA | 1834195 | c.654G>C | synonymous_variant | 0.25 |
rpsA | 1834234 | c.693G>C | synonymous_variant | 0.25 |
rpsA | 1834240 | c.699T>C | synonymous_variant | 0.31 |
rpsA | 1834249 | c.708T>C | synonymous_variant | 0.42 |
rpsA | 1834258 | c.717G>A | synonymous_variant | 0.43 |
rpsA | 1834261 | c.720A>G | synonymous_variant | 0.43 |
rpsA | 1834264 | c.723G>C | synonymous_variant | 0.45 |
rpsA | 1834294 | c.753G>C | synonymous_variant | 0.47 |
rpsA | 1834298 | p.Gln253Glu | missense_variant | 0.47 |
rpsA | 1834306 | c.765T>C | synonymous_variant | 0.5 |
rpsA | 1834307 | p.Asp256Gln | missense_variant | 0.5 |
rpsA | 1834312 | c.771G>A | synonymous_variant | 0.5 |
rpsA | 1834327 | c.786G>T | synonymous_variant | 0.52 |
rpsA | 1834345 | c.804C>T | synonymous_variant | 0.39 |
rpsA | 1834348 | c.807T>C | synonymous_variant | 0.38 |
rpsA | 1834354 | c.813G>C | synonymous_variant | 0.4 |
rpsA | 1834357 | c.816T>C | synonymous_variant | 0.44 |
rpsA | 1834360 | c.819G>C | synonymous_variant | 0.44 |
rpsA | 1834361 | c.820T>C | synonymous_variant | 0.44 |
rpsA | 1834366 | c.825A>C | synonymous_variant | 0.44 |
rpsA | 1834375 | c.834G>C | synonymous_variant | 0.44 |
rpsA | 1834378 | c.837T>C | synonymous_variant | 0.44 |
rpsA | 1834387 | c.846C>T | synonymous_variant | 0.39 |
rpsA | 1834395 | p.Arg285Gln | missense_variant | 0.21 |
rpsA | 1834397 | p.His286Ala | missense_variant | 0.23 |
rpsA | 1834411 | c.870T>C | synonymous_variant | 0.17 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
ndh | 2103227 | c.-185T>C | upstream_gene_variant | 0.13 |
PPE35 | 2169269 | c.1344A>G | synonymous_variant | 0.12 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
kasA | 2518961 | p.Asp283Asn | missense_variant | 0.25 |
ahpC | 2726210 | c.18T>C | synonymous_variant | 1.0 |
folC | 2747554 | c.45C>T | synonymous_variant | 0.13 |
ald | 3086788 | c.-32T>C | upstream_gene_variant | 1.0 |
fbiD | 3339550 | p.Gly145Arg | missense_variant | 1.0 |
fprA | 3473874 | c.-133C>T | upstream_gene_variant | 0.11 |
fprA | 3473996 | c.-11_-10insA | upstream_gene_variant | 1.0 |
Rv3236c | 3613090 | p.Phe9Leu | missense_variant | 0.14 |
fbiA | 3641447 | p.Thr302Met | missense_variant | 1.0 |
rpoA | 3877553 | p.Glu319Lys | missense_variant | 1.0 |
embC | 4240223 | p.Leu121Met | missense_variant | 0.13 |
embC | 4240897 | c.1035C>G | synonymous_variant | 1.0 |
embA | 4242643 | c.-590C>T | upstream_gene_variant | 1.0 |
embC | 4242803 | p.Val981Leu | missense_variant | 1.0 |
embB | 4246235 | c.-279G>A | upstream_gene_variant | 0.13 |
embB | 4249408 | c.2895G>A | synonymous_variant | 1.0 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |