SRR11342676
|
HR-TB
|
lineage4.6.2.2
|
None
|
ERR037504
|
Other
|
lineage4.9.1
|
None
|
ERR978726_ERR978727
|
RR-TB
|
lineage4.8
|
None
|
SRR9971112
|
Other
|
lineage2.2.1
|
None
|
ERR1023502
|
MDR-TB
|
lineage2;lineage4
|
None
|
SRR1181351
|
Sensitive
|
lineage4.9
|
None
|
ERR4815502
|
Other
|
lineage4.1
|
None
|
ERR867525
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR736831
|
Other
|
lineage4.9
|
None
|
SRR11342664
|
MDR-TB
|
lineage2.2.2
|
None
|
SAMEA3501052
|
RR-TB
|
lineage4.8
|
None
|
SRR1181402
|
Sensitive
|
lineage4.9
|
None
|
ERR6359070
|
Sensitive
|
lineage4.9
|
None
|
SRR1735598
|
RR-TB
|
lineage4.9
|
None
|
ERR978757
|
RR-TB
|
lineage4.8
|
None
|
ERR4769442
|
Sensitive
|
lineage4.9
|
None
|
ERR4819462
|
Sensitive
|
lineage4.9
|
None
|
ERR4820746
|
Other
|
lineage3
|
None
|
SRR11342671
|
RR-TB
|
lineage4.1.3
|
None
|
SRR11342673
|
RR-TB
|
lineage4.3.4.2
|
None
|
SRR17567917
|
RR-TB
|
lineage4.4.1.1
|
None
|
SRR1140724
|
Other
|
lineage2.2.1
|
None
|
SRR16156804
|
Sensitive
|
lineage4.9
|
None
|
SRR11342693
|
MDR-TB
|
lineage4.8.1
|
None
|
SRR11349145
|
Pre-XDR-TB
|
lineage4.4.1.1.1
|
None
|
SRR18911231
|
Sensitive
|
lineage4.1.1.3
|
None
|
SRR6046141
|
Other
|
lineage4.9
|
None
|
ERR4815471
|
Sensitive
|
lineage4.9
|
None
|
ERR4815811
|
Other
|
lineage4.2.1.1
|
None
|
ERR4816745
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR323044
|
HR-TB
|
lineage4.3.4.2.1
|
None
|
ERR978751
|
Other
|
lineage4.8
|
None
|
ERR4821214
|
Other
|
lineage1.2.1.2.1
|
None
|
SAMEA3501063
|
RR-TB
|
lineage4.8
|
None
|
SRR1181325
|
Sensitive
|
lineage4.9
|
None
|
ERR4820324
|
Other
|
lineage4
|
None
|
SRR1180406
|
Sensitive
|
lineage4.9
|
None
|
SRR1049675
|
HR-TB
|
lineage2.2.1
|
None
|
ERR4808964
|
RR-TB
|
lineage2.2.1
|
None
|
SRR9971114
|
Other
|
lineage2.2.1
|
None
|
ERR4818556
|
Sensitive
|
lineage3
|
None
|
ERR4818646
|
Sensitive
|
lineage4.1.2.1
|
None
|
SRR15315797
|
RR-TB
|
lineage2.2.1
|
None
|
SRR18003004
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
ERR978765
|
RR-TB
|
lineage4.8
|
None
|
SRR10315556
|
Sensitive
|
lineage2.2.1
|
None
|
ERR4816610
|
Other
|
lineage4.3.3
|
None
|
ERR4818624
|
Other
|
lineage4.3.4.2.1
|
None
|
SRR1180440
|
Other
|
lineage4.9
|
None
|
SRR11342649
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR9787336
|
RR-TB
|
lineage6.1.3
|
None
|
ERR867524
|
Pre-XDR-TB
|
lineage4.2.1
|
None
|
SRR19303820
|
RR-TB
|
lineage4.8
|
None
|
ERR4816476
|
Other
|
lineage3.1.2.1
|
None
|
SRR1180444
|
Sensitive
|
lineage4.9
|
None
|
SRR1180946
|
Sensitive
|
lineage2;lineage4.9
|
None
|
ERR9119733
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR978726
|
RR-TB
|
lineage4.8
|
None
|
SRR5153091
|
HR-TB
|
lineage4.3.3
|
None
|
ERR4818393
|
RR-TB
|
lineage3;lineage4
|
None
|
ERR4816717
|
RR-TB
|
lineage3.1.2.1
|
None
|
SAMEA3501073
|
RR-TB
|
lineage4.8
|
None
|
SRR7070320
|
Other
|
lineage4.8
|
None
|
SRR11342687
|
RR-TB
|
lineage4.2.2.2
|
None
|
ERR4820266
|
Sensitive
|
lineage3
|
None
|
ERR867575
|
Other
|
lineage4.9
|
None
|
ERR4815709
|
Sensitive
|
lineage4.1.2.1
|
None
|
ERR5908124
|
Other
|
lineage4.8
|
None
|
SRR1184114
|
Sensitive
|
lineage2.2.1;lineage4.9
|
None
|
SRR11342682
|
Other
|
lineage4.1.2
|
None
|
ERR216965
|
Sensitive
|
lineage4.9
|
None
|
ERR978761_ERR978762_ERR978760
|
RR-TB
|
lineage4.8
|
None
|
ERR4596904
|
MDR-TB
|
lineage3.1.1
|
None
|
ERR6359066
|
HR-TB
|
lineage4.9
|
None
|
ERR4818726
|
Other
|
lineage4.1.2.1
|
None
|
SRR1175487
|
Sensitive
|
lineage4.9
|
None
|
SAMEA3501065
|
RR-TB
|
lineage4.8
|
None
|
ERR2229198
|
Sensitive
|
lineage4.8
|
None
|
SRR3675230
|
Other
|
lineage3;lineage4
|
None
|
ERR978755_ERR978756_ERR978754_ERR978757
|
RR-TB
|
lineage4.8
|
None
|
SRR10315751
|
MDR-TB
|
lineage4.8
|
None
|
ERR4818126
|
Other
|
lineage1.2.2
|
None
|
ERR6197043
|
MDR-TB
|
lineage4.3.4.2
|
None
|
ERR4821704
|
Other
|
lineage4.3.3
|
None
|
SRR1181283
|
Sensitive
|
lineage4.9
|
None
|
SRR13888750
|
Other
|
La2
|
None
|
SRR16156188
|
Sensitive
|
lineage4.9
|
None
|
SRR9970981
|
RR-TB
|
lineage4.3.2.1
|
None
|
ERR6359074
|
HR-TB
|
lineage4.9
|
None
|
SRR11342653
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4818988
|
Other
|
lineage1.2.2
|
None
|
ERR6358951
|
Sensitive
|
lineage4.9
|
None
|
ERR978766
|
RR-TB
|
lineage4.8
|
None
|
ERR4819265
|
HR-TB
|
lineage4.3.4.1
|
None
|
ERR4819640
|
RR-TB
|
lineage4.6.2.2
|
None
|
SRR1175512
|
Sensitive
|
lineage4.9
|
None
|
ERR978735
|
Other
|
lineage4.8
|
None
|
ERR502470
|
RR-TB
|
lineage4.9
|
None
|
ERR11465189
|
RR-TB
|
lineage4.9.1
|
None
|
ERR4821222
|
Other
|
lineage4.3.2.1
|
None
|
SAMEA3501070
|
RR-TB
|
lineage4.8
|
None
|
ERR4816093
|
Other
|
lineage1.1.3
|
None
|
ERR4817060
|
Other
|
|
None
|
SRR9971122
|
MDR-TB
|
lineage4.8
|
None
|
ERR9786076
|
Sensitive
|
lineage3
|
None
|
SRR1180355
|
Sensitive
|
lineage4.9
|
None
|
SRR1181256
|
Other
|
lineage4.9
|
None
|
ERR4820019
|
Other
|
lineage4.3.4.2.1
|
None
|
SRR7070195
|
Sensitive
|
lineage3.1.2.1
|
None
|
SRR12708396
|
MDR-TB
|
lineage4.3.2.1
|
None
|
SRR1180312
|
Sensitive
|
lineage4.9
|
None
|
SRR6045002
|
RR-TB
|
lineage4.9
|
None
|
ERR867570
|
RR-TB
|
lineage4.9
|
None
|
SRR1180410
|
Sensitive
|
lineage4.9
|
None
|
ERR4817964
|
RR-TB
|
lineage4.1.2.1
|
gb
|
SRR1049674
|
HR-TB
|
lineage2.2.1
|
None
|
SRR11342662
|
MDR-TB
|
lineage4.8.1
|
None
|
SRR1140712
|
MDR-TB
|
lineage4.6.1.2
|
None
|
SRR1180250
|
Other
|
lineage4.9
|
None
|
ERR4769444
|
HR-TB
|
lineage4.9
|
None
|
ERR4769439
|
HR-TB
|
lineage4.9
|
None
|
SRR5007165
|
Other
|
lineage3
|
None
|
ERR4816866
|
Other
|
lineage2.2.1
|
None
|
ERR978746_ERR978747_ERR978748
|
RR-TB
|
lineage4.8
|
None
|
ERR4822261
|
RR-TB
|
lineage2.2.1
|
None
|
SRR11342658
|
RR-TB
|
lineage4.1.2
|
None
|
SRR10315558
|
Sensitive
|
lineage2.2.1
|
None
|
SRR1180300
|
Sensitive
|
lineage4.9
|
None
|
ERR473323
|
HR-TB
|
lineage4.9
|
None
|
SRR1062919
|
HR-TB
|
lineage2.2.1
|
None
|
ERR751345
|
Other
|
lineage5.1.1
|
None
|
ERR4769554
|
RR-TB
|
lineage4.9
|
None
|
SRR11972425
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR6046616
|
Other
|
lineage4.3.1.1
|
None
|
ERR4821408
|
Sensitive
|
lineage4.1.2
|
None
|
ERR978752
|
Other
|
lineage4.8
|
None
|
SRR11342642
|
MDR-TB
|
lineage4.1.1.1
|
None
|
ERR4820959
|
Other
|
lineage4.1.2.1
|
None
|
ERR10796620
|
Other
|
lineage4.1.1.1
|
None
|
SRR6045267
|
RR-TB
|
lineage4.8
|
None
|
ERR108125
|
RR-TB
|
lineage4.9
|
None
|
ERR4816964
|
Sensitive
|
lineage4.9
|
None
|
SRR5818647
|
Other
|
lineage4.3.4.2.1
|
None
|
ERR1063855
|
Other
|
lineage4.9
|
None
|
SRR1062880
|
MDR-TB
|
lineage4.6.1.2
|
None
|
SRR11342660
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR7070293
|
Other
|
lineage4.8
|
None
|
ERR4816967
|
Other
|
lineage5
|
None
|
ERR4816548
|
HR-TB
|
lineage4.5
|
None
|
ERR6359069
|
Sensitive
|
lineage4.9
|
None
|
ERR6866125
|
Sensitive
|
lineage4.1.2.1
|
None
|
ERR978760
|
RR-TB
|
lineage4.8
|
None
|
SRR18003047
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR9896153
|
RR-TB
|
lineage4.4.1.1
|
None
|
SRR11342636
|
MDR-TB
|
lineage4.3.3
|
None
|
SRR20969542
|
Other
|
lineage4.4.2
|
None
|
ERR485006
|
HR-TB
|
lineage4.9
|
None
|
ERR867541
|
MDR-TB
|
lineage4.2.1
|
None
|
ERR5987263
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR3276170
|
Other
|
lineage4.1.2.1
|
nl
|
SRR18002881
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4815909
|
Other
|
lineage4.8
|
None
|
ERR4817189
|
Other
|
lineage4.7
|
None
|
SRR11342644
|
MDR-TB
|
lineage4.4.1.1.1
|
None
|
ERR3797062
|
RR-TB
|
lineage4.9
|
None
|
ERR1023509
|
Other
|
lineage4.9
|
None
|
SRR11342696
|
MDR-TB
|
lineage4.4.1.1.1
|
None
|
ERR4820410
|
RR-TB
|
lineage3.1.1
|
None
|
ERR4817584
|
Other
|
lineage3;lineage4.9
|
None
|
SRR1173740
|
Other
|
lineage3;lineage4
|
None
|
ERR4820075
|
Other
|
lineage4.1.2.1
|
None
|
SRR14801652
|
HR-TB
|
lineage4.3.3
|
None
|
SRR16156697
|
RR-TB
|
lineage2.2.1
|
None
|
ERR978734_ERR978733_ERR978735
|
RR-TB
|
lineage4.8
|
None
|
ERR4819011
|
Other
|
lineage3.1.2.1
|
None
|
ERR4819864
|
RR-TB
|
lineage1.1.3.1
|
None
|
SRR1180413
|
Sensitive
|
lineage4.9
|
None
|
SRR1181390
|
Sensitive
|
lineage2.2.1;lineage4.9
|
None
|
ERR10796598
|
Other
|
lineage4.9
|
None
|
ERR867573
|
Other
|
lineage4.9
|
None
|
ERR3283006
|
RR-TB
|
lineage4.9
|
None
|
ERR473334
|
HR-TB
|
lineage4.9
|
None
|
ERR4814896
|
Other
|
lineage2.2.1.1
|
None
|
SAMEA3501046
|
RR-TB
|
lineage4.8
|
None
|
SAMEA3501067
|
RR-TB
|
lineage4.8
|
None
|
SRR1049582
|
MDR-TB
|
lineage4.6.1.2
|
None
|
ERR4817069
|
RR-TB
|
|
None
|
ERR4818536
|
Other
|
lineage4.9
|
None
|
SRR1173281
|
Other
|
lineage3
|
None
|
SRR6046385
|
Sensitive
|
lineage4.9
|
None
|
SRR1175513
|
Sensitive
|
lineage4.9
|
None
|
SRR6045832
|
Other
|
lineage4.9
|
None
|
SRR18002947
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR11349147
|
RR-TB
|
lineage4.3.2.1
|
None
|
SRR14782539
|
MDR-TB
|
lineage4.2.1
|
None
|
ERR4820151
|
Other
|
lineage4.8
|
None
|
ERR4818710
|
Sensitive
|
lineage4.9
|
None
|
SRR12708414
|
HR-TB
|
lineage2.2.1
|
None
|
SRR1181403
|
Other
|
lineage4.9
|
None
|
ERR4769417
|
Pre-XDR-TB
|
lineage4.9
|
None
|
ERR867542
|
HR-TB
|
lineage4.2.1.1;lineage4.3.3
|
None
|
ERR4819357
|
Sensitive
|
lineage4.9
|
None
|
ERR4815079
|
RR-TB
|
lineage3
|
None
|
SRR1181215
|
Sensitive
|
lineage4.4.1.1.1
|
None
|
ERR4819772
|
Other
|
lineage1.1.3.1
|
None
|
ERR4819948
|
Other
|
lineage4.4.1.1
|
None
|
SRR1172807
|
Sensitive
|
lineage4.9
|
None
|
ERR4809333
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
ERR4815121
|
HR-TB
|
lineage4.6.2.2
|
None
|
SRR1180375
|
Sensitive
|
lineage4.9
|
None
|
SRR1180391
|
Sensitive
|
lineage4.9
|
None
|
SRR6046839
|
Other
|
lineage4.9
|
None
|
ERR4829816
|
RR-TB
|
lineage4.4.1.1
|
None
|
SRR1735596
|
RR-TB
|
lineage4.9
|
None
|
SRR12708413
|
HR-TB
|
lineage4.1.1.3
|
None
|
SRR22175249
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR7069800
|
Other
|
lineage3.1.2.1
|
None
|
SRR3675552
|
Other
|
lineage4.9
|
None
|
SRR1181237
|
Sensitive
|
lineage2.2.1;lineage4
|
None
|
ERR736837
|
Pre-XDR-TB
|
lineage4.9
|
None
|
ERR176741
|
Other
|
lineage4.9
|
None
|
ERR4818259
|
RR-TB
|
lineage4.1.1.1
|
None
|
ERR2512986
|
Other
|
lineage3
|
None
|
SRR16156832
|
RR-TB
|
lineage2.2;lineage4
|
None
|
SRR12708407
|
HR-TB
|
lineage4.3.2.1
|
None
|
ERR867567
|
RR-TB
|
lineage3
|
None
|
ERR4815901
|
Other
|
lineage2.2.2
|
None
|
ERR978762
|
Other
|
lineage4.8
|
None
|
ERR978750_ERR978752_ERR978751
|
RR-TB
|
lineage4.8
|
None
|
SRR11342686
|
MDR-TB
|
lineage4.8
|
None
|
SRR11342651
|
MDR-TB
|
lineage4.1.1.1
|
None
|
ERR4819706
|
MDR-TB
|
lineage4.3.4.2
|
None
|
ERR6197035
|
Sensitive
|
lineage4.7
|
None
|
SAMN02380990
|
MDR-TB
|
lineage4.6.1.2
|
None
|
SRR10315567
|
HR-TB
|
lineage2.2.1
|
None
|
ERR4819096
|
Other
|
lineage4.4.1.1
|
None
|
ERR4816425
|
Other
|
lineage2.2.2
|
None
|
ERR4811035
|
Pre-XDR-TB
|
lineage2.2.1;lineage4.5
|
None
|
ERR2027290
|
Other
|
lineage3.1.2.1;lineage4.9
|
None
|
SRR12708392
|
Other
|
lineage2.2.1
|
None
|
ERR867523
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR6046376
|
Other
|
lineage3
|
None
|
SRR5007193
|
RR-TB
|
lineage4.1.1.3.1
|
None
|
SRR1180977
|
Sensitive
|
lineage4.9
|
None
|
ERR323037
|
Other
|
lineage4.9
|
None
|
SRR1181349
|
Sensitive
|
lineage4
|
None
|
ERR978767
|
RR-TB
|
lineage4.8
|
None
|
ERR4829039
|
RR-TB
|
lineage4.3.1
|
None
|
ERR978767_ERR978765_ERR978766
|
RR-TB
|
lineage4.8
|
None
|
ERR9119120
|
Other
|
lineage4.8
|
None
|
SRR5007168
|
Other
|
lineage4.8.2;lineage4.9
|
None
|
SRR1180446
|
Other
|
lineage4.9
|
None
|
ERR4818522
|
Other
|
lineage3
|
None
|
ERR10796578
|
Other
|
lineage2.2.1
|
None
|
SRR1180399
|
Sensitive
|
lineage4.9
|
None
|
ERR4821679
|
Other
|
lineage4.3.3
|
None
|
SRR11342647
|
MDR-TB
|
lineage4.1.1.3
|
None
|