TB-Profiler result

Run: ERR4820746
Summary

Run ID: ERR4820746

Sample name:

Date: 01-04-2023 16:51:14

Number of reads: 210644

Percentage reads mapped: 45.36

Strain: lineage3

Drug-resistance: RR-TB

Download CSV Download TXT Download PDF Download JSON
Drug resistance: This table reports drug-resistance associated mutations found in known resistance genes
Drug Resistance Supporting mutations
Lineage Table: The lineage is inferred by analysing lineage specific SNPs
Lineage Family Main Spoligotype RDs Frequency
lineage3 East-African-Indian CAS RD750 1.0
Drug resistance-Associated Mutations: This table reports mutations found in candidate resistance genes which have been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction Drugs
rpoB 761127 p.Ser441Ala missense_variant 0.35 rifampicin
rpoB 761196 p.Leu464Met missense_variant 0.38 rifampicin
rrs 1472733 n.888G>A non_coding_transcript_exon_variant 0.42 streptomycin
Non-Associated Mutations: This table reports mutations found in candidate resistance genes which have not been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction
gyrA 7362 p.Glu21Gln missense_variant 1.0
gyrA 9304 p.Gly668Asp missense_variant 1.0
gyrA 9654 p.Arg785Cys missense_variant 0.25
fgd1 491545 p.Thr255Ala missense_variant 1.0
fgd1 491742 c.960T>C synonymous_variant 1.0
mshA 576636 p.Trp430Leu missense_variant 0.33
rpoB 759746 c.-61C>T upstream_gene_variant 1.0
rpoB 760464 p.Ile220Val missense_variant 0.29
rpoB 761102 c.1296A>G synonymous_variant 0.25
rpoB 761132 c.1326G>C synonymous_variant 0.31
rpoB 761133 c.1327T>C synonymous_variant 0.35
rpoB 761150 c.1344A>T synonymous_variant 0.31
rpoB 761159 c.1353G>C synonymous_variant 0.33
rpoB 761165 c.1359G>C synonymous_variant 0.33
rpoB 761180 c.1374A>C synonymous_variant 0.44
rpoB 761186 p.Glu460Asp missense_variant 0.44
rpoB 761189 c.1383T>C synonymous_variant 0.25
rpoB 761192 c.1386C>G synonymous_variant 0.29
rpoB 761195 c.1389G>C synonymous_variant 0.29
rpoB 761201 c.1395G>A synonymous_variant 0.38
rpoB 761204 c.1398C>T synonymous_variant 0.38
rpoB 761207 c.1401C>A synonymous_variant 0.38
rpoB 761213 c.1407G>C synonymous_variant 0.38
rpoB 761219 c.1413G>C synonymous_variant 0.43
rpoB 761231 c.1425C>T synonymous_variant 0.29
rpoB 761234 c.1428G>T synonymous_variant 0.29
rpoC 762434 c.-936T>G upstream_gene_variant 1.0
rpoB 762736 p.Ala977Val missense_variant 0.29
rpoC 763031 c.-339T>C upstream_gene_variant 1.0
rpoC 763103 c.-267G>C upstream_gene_variant 0.5
rpoC 763109 c.-261C>T upstream_gene_variant 0.5
rpoC 763115 c.-255T>C upstream_gene_variant 0.5
rpoB 763119 p.Asn1105Asp missense_variant 0.33
rpoC 763468 c.99G>C synonymous_variant 0.25
rpoC 763480 c.111C>T synonymous_variant 0.25
rpoC 763486 c.117T>C synonymous_variant 0.25
rpoC 763492 c.123G>C synonymous_variant 0.25
rpoC 763496 p.Lys43Arg missense_variant 0.25
rpoC 763511 p.Cys48Gly missense_variant 0.2
rpoC 763517 p.Lys50Gln missense_variant 0.2
rpoC 763525 c.156C>T synonymous_variant 0.22
rpoC 763528 c.159G>C synonymous_variant 0.33
rpoC 763531 c.162G>C synonymous_variant 0.33
rpoC 763534 c.165T>C synonymous_variant 0.33
rpoC 763546 c.177A>G synonymous_variant 0.22
rpoC 763550 p.Tyr61Ala missense_variant 0.22
rpoC 763555 c.186C>T synonymous_variant 0.22
rpoC 763570 c.201G>C synonymous_variant 0.44
rpoC 763578 p.Phe70Tyr missense_variant 0.44
rpoC 763585 c.216C>G synonymous_variant 0.2
rpoC 763589 p.Ile74Val missense_variant 0.2
rpoC 763598 p.Arg77Ser missense_variant 0.25
rpoC 763606 c.237C>G synonymous_variant 0.33
rpoC 763615 c.246G>C synonymous_variant 0.33
rpoC 763618 c.249C>T synonymous_variant 0.33
rpoC 763622 p.Ala85Ser missense_variant 0.43
rpoC 763636 c.267T>C synonymous_variant 0.43
rpoC 763642 c.273G>C synonymous_variant 0.5
rpoC 763647 p.Gly93Ala missense_variant 0.3
rpoC 763655 p.Glu96Asn missense_variant 0.38
rpoC 763660 c.291T>C synonymous_variant 0.83
rpoC 763666 c.297G>C synonymous_variant 0.43
rpoC 763669 c.300C>G synonymous_variant 0.43
rpoC 763675 c.306C>G synonymous_variant 0.33
rpoC 763708 c.339G>C synonymous_variant 0.33
rpoC 763714 c.345G>C synonymous_variant 0.29
rpoC 763717 c.348T>C synonymous_variant 0.29
rpoC 763724 p.Asp119Asn missense_variant 0.29
rpoC 763729 c.360G>C synonymous_variant 0.4
rpoC 763732 c.363C>G synonymous_variant 0.4
rpoC 763735 c.366G>C synonymous_variant 0.5
rpoC 763751 p.Ile128Val missense_variant 0.4
rpoC 764359 c.990C>G synonymous_variant 0.4
rpoC 764371 c.1002G>C synonymous_variant 0.5
rpoC 764377 c.1008C>G synonymous_variant 0.6
rpoC 764380 c.1011G>C synonymous_variant 0.67
rpoC 764387 c.1018_1020delTTGinsCTC synonymous_variant 0.67
rpoC 764405 c.1036_1038delAGGinsCGC synonymous_variant 0.62
rpoC 764410 c.1041G>C synonymous_variant 0.62
rpoC 764424 p.Asn352Thr missense_variant 0.62
rpoC 764428 c.1059G>A synonymous_variant 0.62
rpoC 764431 c.1062G>C synonymous_variant 0.62
rpoC 764434 c.1065A>G synonymous_variant 0.62
rpoC 764435 c.1066_1068delAGGinsCGC synonymous_variant 0.83
rpoC 764441 p.Ile358Leu missense_variant 0.62
rpoC 764446 p.Asp359Glu missense_variant 0.62
rpoC 764455 c.1086G>C synonymous_variant 0.62
rpoC 764458 c.1089G>C synonymous_variant 0.62
rpoC 764461 c.1092A>G synonymous_variant 0.62
rpoC 764485 c.1116G>C synonymous_variant 0.5
rpoC 764491 c.1122G>T synonymous_variant 0.56
rpoC 764497 c.1128A>G synonymous_variant 0.5
rpoC 764503 c.1134G>T synonymous_variant 0.43
rpoC 764509 c.1140G>C synonymous_variant 0.33
rpoC 764512 c.1143G>C synonymous_variant 0.33
rpoC 764521 c.1152T>C synonymous_variant 0.33
rpoC 764548 c.1179G>C synonymous_variant 0.25
rpoC 764573 p.Leu402Ile missense_variant 0.29
rpoC 764578 c.1209C>G synonymous_variant 0.29
rpoC 764581 c.1212T>C synonymous_variant 0.29
rpoC 764582 p.Leu405Met missense_variant 0.29
rpoC 764593 c.1224C>T synonymous_variant 0.25
rpoC 764602 c.1233C>T synonymous_variant 0.3
rpoC 764605 c.1236G>T synonymous_variant 0.3
rpoC 764611 c.1242G>T synonymous_variant 0.3
rpoC 764626 c.1257C>T synonymous_variant 0.3
rpoC 764632 c.1263T>C synonymous_variant 0.33
rpoC 764647 c.1278C>T synonymous_variant 0.33
rpoC 764650 c.1281G>T synonymous_variant 0.33
rpoC 764653 c.1284G>C synonymous_variant 0.33
rpoC 764656 c.1287C>T synonymous_variant 0.33
rpoC 764662 c.1293G>C synonymous_variant 0.33
rpoC 764677 c.1308C>G synonymous_variant 0.33
rpoC 764678 p.Lys437Gln missense_variant 0.33
rpoC 764692 c.1323C>T synonymous_variant 0.33
rpoC 764971 c.1602C>G synonymous_variant 0.18
rpoC 766147 c.2778C>T synonymous_variant 1.0
mmpL5 775639 p.Ile948Val missense_variant 1.0
mmpL5 776100 p.Thr794Ile missense_variant 1.0
mmpL5 776937 p.Asn515Thr missense_variant 0.33
mmpS5 779636 c.-731C>A upstream_gene_variant 0.33
rpsL 781395 c.-165T>C upstream_gene_variant 1.0
rpsL 781766 c.207C>T synonymous_variant 0.38
rpsL 781772 c.213C>T synonymous_variant 0.22
rpsL 781796 p.Met79Ile missense_variant 0.36
rpsL 781802 c.243G>C synonymous_variant 0.4
rpsL 781811 c.252C>T synonymous_variant 0.22
rpsL 781814 c.255C>T synonymous_variant 0.22
rpsL 781817 c.258G>T synonymous_variant 0.22
rpsL 781825 c.268delC frameshift_variant 0.22
rpsL 781832 c.273T>C synonymous_variant 0.22
rpsL 781835 c.276T>C synonymous_variant 0.25
rpsL 781841 c.282C>T synonymous_variant 0.25
rpsL 781845 p.Lys96Arg missense_variant 0.25
rpsL 781851 p.Ile98Val missense_variant 0.25
rplC 801453 c.645T>C synonymous_variant 0.29
fbiC 1302934 p.Pro2Ser missense_variant 0.25
embR 1417207 c.141C>T synonymous_variant 0.25
rrs 1471659 n.-187C>T upstream_gene_variant 1.0
rrs 1471979 n.134T>C non_coding_transcript_exon_variant 0.6
rrs 1471985 n.140T>G non_coding_transcript_exon_variant 0.6
rrs 1471986 n.141C>T non_coding_transcript_exon_variant 0.6
rrs 1472108 n.263C>T non_coding_transcript_exon_variant 0.83
rrs 1472112 n.267C>T non_coding_transcript_exon_variant 0.15
rrs 1472122 n.277G>T non_coding_transcript_exon_variant 0.81
rrs 1472123 n.278A>T non_coding_transcript_exon_variant 0.81
rrs 1472124 n.279C>T non_coding_transcript_exon_variant 0.81
rrs 1472150 n.305T>A non_coding_transcript_exon_variant 0.92
rrs 1472155 n.310C>T non_coding_transcript_exon_variant 0.83
rrs 1472160 n.315C>T non_coding_transcript_exon_variant 0.77
rrs 1472225 n.380C>A non_coding_transcript_exon_variant 0.78
rrs 1472251 n.406G>A non_coding_transcript_exon_variant 1.0
rrs 1472258 n.413A>G non_coding_transcript_exon_variant 0.33
rrs 1472259 n.414C>A non_coding_transcript_exon_variant 0.44
rrs 1472379 n.534T>C non_coding_transcript_exon_variant 1.0
rrs 1472400 n.555C>T non_coding_transcript_exon_variant 1.0
rrs 1472412 n.567A>G non_coding_transcript_exon_variant 1.0
rrs 1472416 n.571C>T non_coding_transcript_exon_variant 1.0
rrs 1472422 n.577T>C non_coding_transcript_exon_variant 1.0
rrs 1472427 n.582T>G non_coding_transcript_exon_variant 1.0
rrs 1472435 n.590T>C non_coding_transcript_exon_variant 1.0
rrs 1472498 n.653C>A non_coding_transcript_exon_variant 1.0
rrs 1472498 n.653C>T non_coding_transcript_exon_variant 1.0
rrs 1472507 n.662C>G non_coding_transcript_exon_variant 0.82
rrs 1472513 n.668T>C non_coding_transcript_exon_variant 0.25
rrs 1472517 n.672T>A non_coding_transcript_exon_variant 0.75
rrs 1472518 n.673G>T non_coding_transcript_exon_variant 0.67
rrs 1472530 n.685G>A non_coding_transcript_exon_variant 0.76
rrs 1472537 n.692C>T non_coding_transcript_exon_variant 0.76
rrs 1472566 n.721G>A non_coding_transcript_exon_variant 0.78
rrs 1472571 n.726G>C non_coding_transcript_exon_variant 0.9
rrs 1472579 n.734G>T non_coding_transcript_exon_variant 0.87
rrs 1472581 n.736A>T non_coding_transcript_exon_variant 0.97
rrs 1472598 n.753A>C non_coding_transcript_exon_variant 0.83
rrs 1472599 n.754G>T non_coding_transcript_exon_variant 0.83
rrs 1472616 n.771G>A non_coding_transcript_exon_variant 0.29
rrs 1472647 n.802C>T non_coding_transcript_exon_variant 0.34
rrs 1472655 n.810G>A non_coding_transcript_exon_variant 0.89
rrs 1472655 n.810G>T non_coding_transcript_exon_variant 0.89
rrs 1472658 n.813G>A non_coding_transcript_exon_variant 0.44
rrs 1472660 n.815T>C non_coding_transcript_exon_variant 0.48
rrs 1472661 n.816A>G non_coding_transcript_exon_variant 0.43
rrs 1472686 n.841G>T non_coding_transcript_exon_variant 0.52
rrs 1472687 n.842A>T non_coding_transcript_exon_variant 0.85
rrs 1472690 n.845C>A non_coding_transcript_exon_variant 0.62
rrs 1472690 n.845C>T non_coding_transcript_exon_variant 0.65
rrs 1472692 n.847T>C non_coding_transcript_exon_variant 0.54
rrs 1472697 n.852T>C non_coding_transcript_exon_variant 0.35
rrs 1472707 n.862A>T non_coding_transcript_exon_variant 0.31
rrs 1472713 n.868T>C non_coding_transcript_exon_variant 0.37
rrs 1472714 n.869A>G non_coding_transcript_exon_variant 0.5
rrs 1472716 n.871C>T non_coding_transcript_exon_variant 0.37
rrs 1472742 n.897C>T non_coding_transcript_exon_variant 0.44
rrs 1472744 n.899A>G non_coding_transcript_exon_variant 0.45
rrs 1472767 n.922G>A non_coding_transcript_exon_variant 0.15
rrs 1472779 n.934G>A non_coding_transcript_exon_variant 0.17
rrs 1472781 n.936C>T non_coding_transcript_exon_variant 0.5
rrs 1472790 n.945T>C non_coding_transcript_exon_variant 0.25
rrs 1472793 n.948A>T non_coding_transcript_exon_variant 0.68
rrs 1472803 n.958T>A non_coding_transcript_exon_variant 0.72
rrs 1472824 n.979T>A non_coding_transcript_exon_variant 0.71
rrs 1472825 n.980G>A non_coding_transcript_exon_variant 0.36
rrs 1472827 n.982G>T non_coding_transcript_exon_variant 0.42
rrs 1472828 n.983T>C non_coding_transcript_exon_variant 0.91
rrs 1472895 n.1050C>T non_coding_transcript_exon_variant 1.0
rrs 1472954 n.1109T>C non_coding_transcript_exon_variant 0.77
rrs 1472956 n.1111T>C non_coding_transcript_exon_variant 0.88
rrs 1472957 n.1112C>T non_coding_transcript_exon_variant 0.81
rrs 1472958 n.1113A>G non_coding_transcript_exon_variant 0.14
rrs 1472973 n.1128A>G non_coding_transcript_exon_variant 0.94
rrs 1472973 n.1128A>T non_coding_transcript_exon_variant 0.86
rrs 1472974 n.1129A>G non_coding_transcript_exon_variant 0.13
rrs 1472988 n.1143T>C non_coding_transcript_exon_variant 0.17
rrs 1472990 n.1145A>G non_coding_transcript_exon_variant 0.91
rrs 1472992 n.1147A>G non_coding_transcript_exon_variant 0.61
rrs 1473005 n.1160C>T non_coding_transcript_exon_variant 0.75
rrs 1473035 n.1190G>A non_coding_transcript_exon_variant 1.0
rrs 1473055 n.1210C>T non_coding_transcript_exon_variant 1.0
rrs 1473056 n.1211A>T non_coding_transcript_exon_variant 1.0
rrs 1473066 n.1221A>G non_coding_transcript_exon_variant 1.0
rrs 1473080 n.1235C>T non_coding_transcript_exon_variant 0.53
rrs 1473081 n.1236C>T non_coding_transcript_exon_variant 0.79
rrs 1473088 n.1243A>G non_coding_transcript_exon_variant 1.0
rrs 1473093 n.1248C>T non_coding_transcript_exon_variant 0.9
rrs 1473100 n.1255G>A non_coding_transcript_exon_variant 1.0
rrs 1473101 n.1256C>T non_coding_transcript_exon_variant 0.43
rrs 1473102 n.1257C>T non_coding_transcript_exon_variant 0.43
rrs 1473104 n.1259C>T non_coding_transcript_exon_variant 1.0
rrs 1473110 n.1265T>G non_coding_transcript_exon_variant 1.0
rrs 1473111 n.1266A>G non_coding_transcript_exon_variant 1.0
rrs 1473115 n.1270G>T non_coding_transcript_exon_variant 0.22
rrs 1473121 n.1276T>C non_coding_transcript_exon_variant 0.77
rrs 1473123 n.1278A>T non_coding_transcript_exon_variant 0.94
rrs 1473129 n.1284C>T non_coding_transcript_exon_variant 0.13
rrs 1473130 n.1285G>A non_coding_transcript_exon_variant 0.67
rrs 1473145 n.1300C>T non_coding_transcript_exon_variant 0.93
rrs 1473148 n.1303G>T non_coding_transcript_exon_variant 0.18
rrs 1473163 n.1318C>A non_coding_transcript_exon_variant 0.15
rrs 1473166 n.1321G>A non_coding_transcript_exon_variant 0.93
rrs 1473172 n.1327T>G non_coding_transcript_exon_variant 0.82
rrs 1473173 n.1328C>T non_coding_transcript_exon_variant 0.85
rrs 1473221 n.1376C>T non_coding_transcript_exon_variant 0.86
rrs 1473252 n.1407T>C non_coding_transcript_exon_variant 0.98
rrs 1473259 n.1414C>T non_coding_transcript_exon_variant 0.98
rrs 1473276 n.1431A>C non_coding_transcript_exon_variant 1.0
rrs 1473277 n.1432G>A non_coding_transcript_exon_variant 0.9
rrs 1473301 n.1456T>G non_coding_transcript_exon_variant 1.0
rrs 1473316 n.1471C>T non_coding_transcript_exon_variant 1.0
rrl 1473384 n.-274A>G upstream_gene_variant 0.67
rrl 1474181 n.524C>A non_coding_transcript_exon_variant 1.0
rrl 1474184 n.527C>T non_coding_transcript_exon_variant 1.0
rrl 1474197 n.540C>T non_coding_transcript_exon_variant 0.88
rrl 1474199 n.542G>C non_coding_transcript_exon_variant 0.7
rrl 1474201 n.545delT non_coding_transcript_exon_variant 1.0
rrl 1474201 n.545T>A non_coding_transcript_exon_variant 1.0
rrl 1474249 n.592G>T non_coding_transcript_exon_variant 1.0
rrl 1474253 n.596A>T non_coding_transcript_exon_variant 0.13
rrl 1474256 n.599T>A non_coding_transcript_exon_variant 0.15
rrl 1474264 n.607T>G non_coding_transcript_exon_variant 0.43
rrl 1474266 n.609T>C non_coding_transcript_exon_variant 0.43
rrl 1474269 n.612C>T non_coding_transcript_exon_variant 0.71
rrl 1474271 n.614A>G non_coding_transcript_exon_variant 0.29
rrl 1474275 n.618T>G non_coding_transcript_exon_variant 0.6
rrl 1474282 n.625G>A non_coding_transcript_exon_variant 1.0
rrl 1474282 n.625G>T non_coding_transcript_exon_variant 1.0
rrl 1474287 n.630T>C non_coding_transcript_exon_variant 0.5
rrl 1474288 n.631C>T non_coding_transcript_exon_variant 0.75
rrl 1474307 n.650G>T non_coding_transcript_exon_variant 0.75
rrl 1474310 n.653T>G non_coding_transcript_exon_variant 1.0
rrl 1474326 n.669T>A non_coding_transcript_exon_variant 0.6
rrl 1474348 n.691C>T non_coding_transcript_exon_variant 0.8
rrl 1474351 n.694G>T non_coding_transcript_exon_variant 0.75
rrl 1474353 n.696A>G non_coding_transcript_exon_variant 0.8
rrl 1474355 n.698A>G non_coding_transcript_exon_variant 0.4
rrl 1474362 n.705A>G non_coding_transcript_exon_variant 0.8
rrl 1474454 n.797G>A non_coding_transcript_exon_variant 0.5
rrl 1474467 n.810A>G non_coding_transcript_exon_variant 0.6
rrl 1474488 n.831G>T non_coding_transcript_exon_variant 0.6
rrl 1474495 n.838G>A non_coding_transcript_exon_variant 0.75
rrl 1474498 n.841G>T non_coding_transcript_exon_variant 0.6
rrl 1474505 n.848C>G non_coding_transcript_exon_variant 0.6
rrl 1474508 n.851C>T non_coding_transcript_exon_variant 0.8
rrl 1474516 n.859C>A non_coding_transcript_exon_variant 0.8
rrl 1474527 n.870T>C non_coding_transcript_exon_variant 0.4
rrl 1474529 n.872A>C non_coding_transcript_exon_variant 0.75
rrl 1474530 n.873G>A non_coding_transcript_exon_variant 0.6
rrl 1474537 n.880G>A non_coding_transcript_exon_variant 1.0
rrl 1474539 n.882C>T non_coding_transcript_exon_variant 0.6
rrl 1474540 n.883T>G non_coding_transcript_exon_variant 0.75
rrl 1474542 n.885A>G non_coding_transcript_exon_variant 0.4
rrl 1474551 n.894G>A non_coding_transcript_exon_variant 0.29
rrl 1474630 n.975delG non_coding_transcript_exon_variant 0.4
rrl 1474638 n.981C>G non_coding_transcript_exon_variant 1.0
rrl 1474643 n.986A>G non_coding_transcript_exon_variant 0.5
rrl 1474663 n.1006C>T non_coding_transcript_exon_variant 0.5
rrl 1474672 n.1015C>T non_coding_transcript_exon_variant 1.0
rrl 1474676 n.1019T>A non_coding_transcript_exon_variant 1.0
rrl 1474677 n.1020A>G non_coding_transcript_exon_variant 1.0
rrl 1474692 n.1035G>A non_coding_transcript_exon_variant 1.0
rrl 1474706 n.1049G>A non_coding_transcript_exon_variant 1.0
rrl 1474717 n.1060A>T non_coding_transcript_exon_variant 1.0
rrl 1474734 n.1077G>A non_coding_transcript_exon_variant 1.0
rrl 1474760 n.1103A>G non_coding_transcript_exon_variant 1.0
rrl 1474794 n.1137C>T non_coding_transcript_exon_variant 1.0
rrl 1474824 n.1167A>G non_coding_transcript_exon_variant 1.0
rrl 1474830 n.1173A>G non_coding_transcript_exon_variant 1.0
rrl 1474831 n.1174A>C non_coding_transcript_exon_variant 1.0
rrl 1474831 n.1174A>T non_coding_transcript_exon_variant 1.0
rrl 1474832 n.1175A>T non_coding_transcript_exon_variant 0.6
rrl 1474864 n.1207C>T non_coding_transcript_exon_variant 1.0
rrl 1474903 n.1246T>C non_coding_transcript_exon_variant 1.0
rrl 1474913 n.1256T>C non_coding_transcript_exon_variant 1.0
rrl 1475031 n.1374G>C non_coding_transcript_exon_variant 1.0
rrl 1475059 n.1403_1404insTA non_coding_transcript_exon_variant 1.0
rrl 1475062 n.1405A>T non_coding_transcript_exon_variant 1.0
rrl 1475065 n.1409_1411delCAA non_coding_transcript_exon_variant 1.0
rrl 1475080 n.1425_1426delCC non_coding_transcript_exon_variant 1.0
rrl 1475090 n.1433A>T non_coding_transcript_exon_variant 1.0
rrl 1475104 n.1447T>A non_coding_transcript_exon_variant 1.0
rrl 1475109 n.1452C>T non_coding_transcript_exon_variant 0.5
rrl 1475114 n.1457C>T non_coding_transcript_exon_variant 1.0
rrl 1475124 n.1467A>T non_coding_transcript_exon_variant 1.0
rrl 1475137 n.1480A>T non_coding_transcript_exon_variant 1.0
rrl 1475713 n.2056C>G non_coding_transcript_exon_variant 0.5
rrl 1475715 n.2058G>A non_coding_transcript_exon_variant 1.0
rrl 1475715 n.2058G>C non_coding_transcript_exon_variant 1.0
rrl 1475716 n.2059A>G non_coding_transcript_exon_variant 0.4
rrl 1475747 n.2090A>C non_coding_transcript_exon_variant 0.67
rrl 1475752 n.2095C>T non_coding_transcript_exon_variant 0.67
rrl 1475753 n.2096C>G non_coding_transcript_exon_variant 1.0
rrl 1475756 n.2099T>C non_coding_transcript_exon_variant 0.67
rrl 1475758 n.2101A>G non_coding_transcript_exon_variant 1.0
rrl 1475762 n.2105G>T non_coding_transcript_exon_variant 1.0
rrl 1475763 n.2106C>T non_coding_transcript_exon_variant 0.67
rrl 1475764 n.2107A>C non_coding_transcript_exon_variant 1.0
rrl 1475765 n.2108A>G non_coding_transcript_exon_variant 1.0
rrl 1475775 n.2118G>T non_coding_transcript_exon_variant 0.67
rrl 1475777 n.2120A>G non_coding_transcript_exon_variant 1.0
rrl 1475777 n.2120A>T non_coding_transcript_exon_variant 1.0
rrl 1475781 n.2124T>G non_coding_transcript_exon_variant 0.33
rrl 1475881 n.2224T>C non_coding_transcript_exon_variant 0.21
rrl 1475883 n.2226A>C non_coding_transcript_exon_variant 1.0
rrl 1475884 n.2227A>G non_coding_transcript_exon_variant 1.0
rrl 1475892 n.2235A>G non_coding_transcript_exon_variant 0.5
rrl 1475896 n.2239A>G non_coding_transcript_exon_variant 0.6
rrl 1475898 n.2241A>G non_coding_transcript_exon_variant 0.7
rrl 1475899 n.2242G>A non_coding_transcript_exon_variant 0.7
rrl 1475900 n.2243A>G non_coding_transcript_exon_variant 0.3
rrl 1475902 n.2245T>C non_coding_transcript_exon_variant 0.3
rrl 1475906 n.2249C>T non_coding_transcript_exon_variant 0.6
rrl 1475916 n.2259C>G non_coding_transcript_exon_variant 1.0
rrl 1475937 n.2280A>T non_coding_transcript_exon_variant 0.8
rrl 1475943 n.2286G>A non_coding_transcript_exon_variant 0.4
rrl 1475970 n.2313C>T non_coding_transcript_exon_variant 1.0
rrl 1475977 n.2320A>G non_coding_transcript_exon_variant 1.0
rrl 1476131 n.2474C>T non_coding_transcript_exon_variant 1.0
rrl 1476164 n.2507A>T non_coding_transcript_exon_variant 0.75
rrl 1476179 n.2522C>T non_coding_transcript_exon_variant 0.75
rrl 1476194 n.2537A>T non_coding_transcript_exon_variant 1.0
rrl 1476200 n.2543A>T non_coding_transcript_exon_variant 1.0
rrl 1476204 n.2547C>T non_coding_transcript_exon_variant 1.0
rrl 1476207 n.2550T>C non_coding_transcript_exon_variant 1.0
rrl 1476214 n.2557G>T non_coding_transcript_exon_variant 1.0
rrl 1476215 n.2558C>T non_coding_transcript_exon_variant 1.0
rrl 1476224 n.2567A>G non_coding_transcript_exon_variant 0.25
rrl 1476225 n.2568T>G non_coding_transcript_exon_variant 0.75
rrl 1476227 n.2570C>T non_coding_transcript_exon_variant 0.42
rrl 1476229 n.2572C>G non_coding_transcript_exon_variant 0.62
rrl 1476229 n.2572C>T non_coding_transcript_exon_variant 0.62
rrl 1476235 n.2578A>G non_coding_transcript_exon_variant 0.15
rrl 1476250 n.2593C>G non_coding_transcript_exon_variant 0.43
rrl 1476251 n.2594T>C non_coding_transcript_exon_variant 0.81
rrl 1476252 n.2595T>A non_coding_transcript_exon_variant 0.35
rrl 1476256 n.2599A>G non_coding_transcript_exon_variant 0.19
rrl 1476257 n.2600G>C non_coding_transcript_exon_variant 0.43
rrl 1476260 n.2603A>G non_coding_transcript_exon_variant 1.0
rrl 1476267 n.2610G>T non_coding_transcript_exon_variant 0.15
rrl 1476280 n.2623A>C non_coding_transcript_exon_variant 0.9
rrl 1476359 n.2702C>G non_coding_transcript_exon_variant 0.97
rrl 1476381 n.2724G>C non_coding_transcript_exon_variant 0.98
rrl 1476428 n.2771C>T non_coding_transcript_exon_variant 0.9
rrl 1476429 n.2772A>T non_coding_transcript_exon_variant 0.86
rrl 1476466 n.2809C>T non_coding_transcript_exon_variant 0.96
rrl 1476481 n.2824T>C non_coding_transcript_exon_variant 0.81
rrl 1476506 n.2849T>C non_coding_transcript_exon_variant 1.0
rrl 1476513 n.2856G>T non_coding_transcript_exon_variant 1.0
rrl 1476515 n.2858C>T non_coding_transcript_exon_variant 1.0
rrl 1476525 n.2868A>G non_coding_transcript_exon_variant 1.0
fabG1 1673359 c.-81T>A upstream_gene_variant 0.33
rpsA 1833655 c.114C>A synonymous_variant 0.25
rpsA 1833727 c.186G>C synonymous_variant 0.14
rpsA 1833732 p.Pro64Leu missense_variant 0.14
rpsA 1833736 c.195C>T synonymous_variant 0.15
rpsA 1833742 c.201A>G synonymous_variant 0.15
rpsA 1834234 c.693G>C synonymous_variant 0.57
rpsA 1834240 c.699T>C synonymous_variant 0.57
rpsA 1834246 c.705G>T synonymous_variant 0.25
rpsA 1834249 c.708T>C synonymous_variant 0.5
rpsA 1834261 c.720A>G synonymous_variant 0.56
rpsA 1834264 c.723G>C synonymous_variant 0.56
rpsA 1834273 c.732C>T synonymous_variant 0.18
rpsA 1834294 c.753G>C synonymous_variant 0.38
rpsA 1834298 p.Gln253Glu missense_variant 0.55
rpsA 1834306 c.765T>C synonymous_variant 0.5
rpsA 1834307 p.Asp256Gln missense_variant 0.5
rpsA 1834312 c.771G>A synonymous_variant 0.5
rpsA 1834327 c.786G>T synonymous_variant 0.5
rpsA 1834345 c.804C>T synonymous_variant 0.4
rpsA 1834348 c.807T>C synonymous_variant 0.33
rpsA 1834354 c.813G>C synonymous_variant 0.33
rpsA 1834357 c.816T>C synonymous_variant 0.22
rpsA 1834360 c.819G>C synonymous_variant 0.22
rpsA 1834361 c.820T>C synonymous_variant 0.25
rpsA 1834366 c.825A>G synonymous_variant 0.25
rpsA 1834375 c.834G>C synonymous_variant 0.33
rpsA 1834378 c.837T>C synonymous_variant 0.3
rpsA 1834387 c.846C>T synonymous_variant 0.3
rpsA 1834411 c.870T>C synonymous_variant 0.33
rpsA 1834417 c.876G>C synonymous_variant 0.33
tlyA 1917972 c.33A>G synonymous_variant 1.0
tlyA 1918454 p.Ser172Leu missense_variant 0.25
katG 2154724 p.Arg463Leu missense_variant 1.0
PPE35 2167745 p.Thr956Arg missense_variant 0.33
PPE35 2167926 p.Leu896Ser missense_variant 1.0
PPE35 2167955 c.2658A>C synonymous_variant 0.4
PPE35 2167965 p.Ala883Gly missense_variant 0.4
PPE35 2167967 c.2646A>C synonymous_variant 0.4
Rv1979c 2221826 p.Phe447Leu missense_variant 1.0
Rv1979c 2223293 c.-129A>G upstream_gene_variant 1.0
pncA 2289047 c.195C>T synonymous_variant 1.0
pncA 2289365 c.-125delC upstream_gene_variant 1.0
ahpC 2726105 c.-88G>A upstream_gene_variant 1.0
folC 2746165 c.1434T>G synonymous_variant 1.0
ribD 2986864 p.Ala9Val missense_variant 0.2
ribD 2987187 c.349C>T synonymous_variant 1.0
thyX 3067481 c.465C>A synonymous_variant 0.4
thyA 3074648 c.-177T>G upstream_gene_variant 0.25
ald 3086788 c.-32T>C upstream_gene_variant 1.0
fprA 3473996 c.-11_-10insA upstream_gene_variant 1.0
alr 3841206 p.His72Leu missense_variant 0.5
clpC1 4038744 p.Thr654Lys missense_variant 0.29
embC 4242075 p.Arg738Gln missense_variant 1.0
embA 4242643 c.-590C>T upstream_gene_variant 1.0
whiB6 4338595 c.-75delG upstream_gene_variant 1.0
gid 4407588 c.615A>G synonymous_variant 1.0
gid 4407713 p.Gly164Arg missense_variant 1.0