Run ID: ERR4820746
Sample name:
Date: 01-04-2023 16:51:14
Number of reads: 210644
Percentage reads mapped: 45.36
Strain: lineage3
Drug-resistance: RR-TB
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage3 | East-African-Indian | CAS | RD750 | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|---|---|---|---|---|
rpoB | 761127 | p.Ser441Ala | missense_variant | 0.35 | rifampicin |
rpoB | 761196 | p.Leu464Met | missense_variant | 0.38 | rifampicin |
rrs | 1472733 | n.888G>A | non_coding_transcript_exon_variant | 0.42 | streptomycin |
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
gyrA | 9304 | p.Gly668Asp | missense_variant | 1.0 |
gyrA | 9654 | p.Arg785Cys | missense_variant | 0.25 |
fgd1 | 491545 | p.Thr255Ala | missense_variant | 1.0 |
fgd1 | 491742 | c.960T>C | synonymous_variant | 1.0 |
mshA | 576636 | p.Trp430Leu | missense_variant | 0.33 |
rpoB | 759746 | c.-61C>T | upstream_gene_variant | 1.0 |
rpoB | 760464 | p.Ile220Val | missense_variant | 0.29 |
rpoB | 761102 | c.1296A>G | synonymous_variant | 0.25 |
rpoB | 761132 | c.1326G>C | synonymous_variant | 0.31 |
rpoB | 761133 | c.1327T>C | synonymous_variant | 0.35 |
rpoB | 761150 | c.1344A>T | synonymous_variant | 0.31 |
rpoB | 761159 | c.1353G>C | synonymous_variant | 0.33 |
rpoB | 761165 | c.1359G>C | synonymous_variant | 0.33 |
rpoB | 761180 | c.1374A>C | synonymous_variant | 0.44 |
rpoB | 761186 | p.Glu460Asp | missense_variant | 0.44 |
rpoB | 761189 | c.1383T>C | synonymous_variant | 0.25 |
rpoB | 761192 | c.1386C>G | synonymous_variant | 0.29 |
rpoB | 761195 | c.1389G>C | synonymous_variant | 0.29 |
rpoB | 761201 | c.1395G>A | synonymous_variant | 0.38 |
rpoB | 761204 | c.1398C>T | synonymous_variant | 0.38 |
rpoB | 761207 | c.1401C>A | synonymous_variant | 0.38 |
rpoB | 761213 | c.1407G>C | synonymous_variant | 0.38 |
rpoB | 761219 | c.1413G>C | synonymous_variant | 0.43 |
rpoB | 761231 | c.1425C>T | synonymous_variant | 0.29 |
rpoB | 761234 | c.1428G>T | synonymous_variant | 0.29 |
rpoC | 762434 | c.-936T>G | upstream_gene_variant | 1.0 |
rpoB | 762736 | p.Ala977Val | missense_variant | 0.29 |
rpoC | 763031 | c.-339T>C | upstream_gene_variant | 1.0 |
rpoC | 763103 | c.-267G>C | upstream_gene_variant | 0.5 |
rpoC | 763109 | c.-261C>T | upstream_gene_variant | 0.5 |
rpoC | 763115 | c.-255T>C | upstream_gene_variant | 0.5 |
rpoB | 763119 | p.Asn1105Asp | missense_variant | 0.33 |
rpoC | 763468 | c.99G>C | synonymous_variant | 0.25 |
rpoC | 763480 | c.111C>T | synonymous_variant | 0.25 |
rpoC | 763486 | c.117T>C | synonymous_variant | 0.25 |
rpoC | 763492 | c.123G>C | synonymous_variant | 0.25 |
rpoC | 763496 | p.Lys43Arg | missense_variant | 0.25 |
rpoC | 763511 | p.Cys48Gly | missense_variant | 0.2 |
rpoC | 763517 | p.Lys50Gln | missense_variant | 0.2 |
rpoC | 763525 | c.156C>T | synonymous_variant | 0.22 |
rpoC | 763528 | c.159G>C | synonymous_variant | 0.33 |
rpoC | 763531 | c.162G>C | synonymous_variant | 0.33 |
rpoC | 763534 | c.165T>C | synonymous_variant | 0.33 |
rpoC | 763546 | c.177A>G | synonymous_variant | 0.22 |
rpoC | 763550 | p.Tyr61Ala | missense_variant | 0.22 |
rpoC | 763555 | c.186C>T | synonymous_variant | 0.22 |
rpoC | 763570 | c.201G>C | synonymous_variant | 0.44 |
rpoC | 763578 | p.Phe70Tyr | missense_variant | 0.44 |
rpoC | 763585 | c.216C>G | synonymous_variant | 0.2 |
rpoC | 763589 | p.Ile74Val | missense_variant | 0.2 |
rpoC | 763598 | p.Arg77Ser | missense_variant | 0.25 |
rpoC | 763606 | c.237C>G | synonymous_variant | 0.33 |
rpoC | 763615 | c.246G>C | synonymous_variant | 0.33 |
rpoC | 763618 | c.249C>T | synonymous_variant | 0.33 |
rpoC | 763622 | p.Ala85Ser | missense_variant | 0.43 |
rpoC | 763636 | c.267T>C | synonymous_variant | 0.43 |
rpoC | 763642 | c.273G>C | synonymous_variant | 0.5 |
rpoC | 763647 | p.Gly93Ala | missense_variant | 0.3 |
rpoC | 763655 | p.Glu96Asn | missense_variant | 0.38 |
rpoC | 763660 | c.291T>C | synonymous_variant | 0.83 |
rpoC | 763666 | c.297G>C | synonymous_variant | 0.43 |
rpoC | 763669 | c.300C>G | synonymous_variant | 0.43 |
rpoC | 763675 | c.306C>G | synonymous_variant | 0.33 |
rpoC | 763708 | c.339G>C | synonymous_variant | 0.33 |
rpoC | 763714 | c.345G>C | synonymous_variant | 0.29 |
rpoC | 763717 | c.348T>C | synonymous_variant | 0.29 |
rpoC | 763724 | p.Asp119Asn | missense_variant | 0.29 |
rpoC | 763729 | c.360G>C | synonymous_variant | 0.4 |
rpoC | 763732 | c.363C>G | synonymous_variant | 0.4 |
rpoC | 763735 | c.366G>C | synonymous_variant | 0.5 |
rpoC | 763751 | p.Ile128Val | missense_variant | 0.4 |
rpoC | 764359 | c.990C>G | synonymous_variant | 0.4 |
rpoC | 764371 | c.1002G>C | synonymous_variant | 0.5 |
rpoC | 764377 | c.1008C>G | synonymous_variant | 0.6 |
rpoC | 764380 | c.1011G>C | synonymous_variant | 0.67 |
rpoC | 764387 | c.1018_1020delTTGinsCTC | synonymous_variant | 0.67 |
rpoC | 764405 | c.1036_1038delAGGinsCGC | synonymous_variant | 0.62 |
rpoC | 764410 | c.1041G>C | synonymous_variant | 0.62 |
rpoC | 764424 | p.Asn352Thr | missense_variant | 0.62 |
rpoC | 764428 | c.1059G>A | synonymous_variant | 0.62 |
rpoC | 764431 | c.1062G>C | synonymous_variant | 0.62 |
rpoC | 764434 | c.1065A>G | synonymous_variant | 0.62 |
rpoC | 764435 | c.1066_1068delAGGinsCGC | synonymous_variant | 0.83 |
rpoC | 764441 | p.Ile358Leu | missense_variant | 0.62 |
rpoC | 764446 | p.Asp359Glu | missense_variant | 0.62 |
rpoC | 764455 | c.1086G>C | synonymous_variant | 0.62 |
rpoC | 764458 | c.1089G>C | synonymous_variant | 0.62 |
rpoC | 764461 | c.1092A>G | synonymous_variant | 0.62 |
rpoC | 764485 | c.1116G>C | synonymous_variant | 0.5 |
rpoC | 764491 | c.1122G>T | synonymous_variant | 0.56 |
rpoC | 764497 | c.1128A>G | synonymous_variant | 0.5 |
rpoC | 764503 | c.1134G>T | synonymous_variant | 0.43 |
rpoC | 764509 | c.1140G>C | synonymous_variant | 0.33 |
rpoC | 764512 | c.1143G>C | synonymous_variant | 0.33 |
rpoC | 764521 | c.1152T>C | synonymous_variant | 0.33 |
rpoC | 764548 | c.1179G>C | synonymous_variant | 0.25 |
rpoC | 764573 | p.Leu402Ile | missense_variant | 0.29 |
rpoC | 764578 | c.1209C>G | synonymous_variant | 0.29 |
rpoC | 764581 | c.1212T>C | synonymous_variant | 0.29 |
rpoC | 764582 | p.Leu405Met | missense_variant | 0.29 |
rpoC | 764593 | c.1224C>T | synonymous_variant | 0.25 |
rpoC | 764602 | c.1233C>T | synonymous_variant | 0.3 |
rpoC | 764605 | c.1236G>T | synonymous_variant | 0.3 |
rpoC | 764611 | c.1242G>T | synonymous_variant | 0.3 |
rpoC | 764626 | c.1257C>T | synonymous_variant | 0.3 |
rpoC | 764632 | c.1263T>C | synonymous_variant | 0.33 |
rpoC | 764647 | c.1278C>T | synonymous_variant | 0.33 |
rpoC | 764650 | c.1281G>T | synonymous_variant | 0.33 |
rpoC | 764653 | c.1284G>C | synonymous_variant | 0.33 |
rpoC | 764656 | c.1287C>T | synonymous_variant | 0.33 |
rpoC | 764662 | c.1293G>C | synonymous_variant | 0.33 |
rpoC | 764677 | c.1308C>G | synonymous_variant | 0.33 |
rpoC | 764678 | p.Lys437Gln | missense_variant | 0.33 |
rpoC | 764692 | c.1323C>T | synonymous_variant | 0.33 |
rpoC | 764971 | c.1602C>G | synonymous_variant | 0.18 |
rpoC | 766147 | c.2778C>T | synonymous_variant | 1.0 |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 1.0 |
mmpL5 | 776100 | p.Thr794Ile | missense_variant | 1.0 |
mmpL5 | 776937 | p.Asn515Thr | missense_variant | 0.33 |
mmpS5 | 779636 | c.-731C>A | upstream_gene_variant | 0.33 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
rpsL | 781766 | c.207C>T | synonymous_variant | 0.38 |
rpsL | 781772 | c.213C>T | synonymous_variant | 0.22 |
rpsL | 781796 | p.Met79Ile | missense_variant | 0.36 |
rpsL | 781802 | c.243G>C | synonymous_variant | 0.4 |
rpsL | 781811 | c.252C>T | synonymous_variant | 0.22 |
rpsL | 781814 | c.255C>T | synonymous_variant | 0.22 |
rpsL | 781817 | c.258G>T | synonymous_variant | 0.22 |
rpsL | 781825 | c.268delC | frameshift_variant | 0.22 |
rpsL | 781832 | c.273T>C | synonymous_variant | 0.22 |
rpsL | 781835 | c.276T>C | synonymous_variant | 0.25 |
rpsL | 781841 | c.282C>T | synonymous_variant | 0.25 |
rpsL | 781845 | p.Lys96Arg | missense_variant | 0.25 |
rpsL | 781851 | p.Ile98Val | missense_variant | 0.25 |
rplC | 801453 | c.645T>C | synonymous_variant | 0.29 |
fbiC | 1302934 | p.Pro2Ser | missense_variant | 0.25 |
embR | 1417207 | c.141C>T | synonymous_variant | 0.25 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
rrs | 1471979 | n.134T>C | non_coding_transcript_exon_variant | 0.6 |
rrs | 1471985 | n.140T>G | non_coding_transcript_exon_variant | 0.6 |
rrs | 1471986 | n.141C>T | non_coding_transcript_exon_variant | 0.6 |
rrs | 1472108 | n.263C>T | non_coding_transcript_exon_variant | 0.83 |
rrs | 1472112 | n.267C>T | non_coding_transcript_exon_variant | 0.15 |
rrs | 1472122 | n.277G>T | non_coding_transcript_exon_variant | 0.81 |
rrs | 1472123 | n.278A>T | non_coding_transcript_exon_variant | 0.81 |
rrs | 1472124 | n.279C>T | non_coding_transcript_exon_variant | 0.81 |
rrs | 1472150 | n.305T>A | non_coding_transcript_exon_variant | 0.92 |
rrs | 1472155 | n.310C>T | non_coding_transcript_exon_variant | 0.83 |
rrs | 1472160 | n.315C>T | non_coding_transcript_exon_variant | 0.77 |
rrs | 1472225 | n.380C>A | non_coding_transcript_exon_variant | 0.78 |
rrs | 1472251 | n.406G>A | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472258 | n.413A>G | non_coding_transcript_exon_variant | 0.33 |
rrs | 1472259 | n.414C>A | non_coding_transcript_exon_variant | 0.44 |
rrs | 1472379 | n.534T>C | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472400 | n.555C>T | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472412 | n.567A>G | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472416 | n.571C>T | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472422 | n.577T>C | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472427 | n.582T>G | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472435 | n.590T>C | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472498 | n.653C>A | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472498 | n.653C>T | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472507 | n.662C>G | non_coding_transcript_exon_variant | 0.82 |
rrs | 1472513 | n.668T>C | non_coding_transcript_exon_variant | 0.25 |
rrs | 1472517 | n.672T>A | non_coding_transcript_exon_variant | 0.75 |
rrs | 1472518 | n.673G>T | non_coding_transcript_exon_variant | 0.67 |
rrs | 1472530 | n.685G>A | non_coding_transcript_exon_variant | 0.76 |
rrs | 1472537 | n.692C>T | non_coding_transcript_exon_variant | 0.76 |
rrs | 1472566 | n.721G>A | non_coding_transcript_exon_variant | 0.78 |
rrs | 1472571 | n.726G>C | non_coding_transcript_exon_variant | 0.9 |
rrs | 1472579 | n.734G>T | non_coding_transcript_exon_variant | 0.87 |
rrs | 1472581 | n.736A>T | non_coding_transcript_exon_variant | 0.97 |
rrs | 1472598 | n.753A>C | non_coding_transcript_exon_variant | 0.83 |
rrs | 1472599 | n.754G>T | non_coding_transcript_exon_variant | 0.83 |
rrs | 1472616 | n.771G>A | non_coding_transcript_exon_variant | 0.29 |
rrs | 1472647 | n.802C>T | non_coding_transcript_exon_variant | 0.34 |
rrs | 1472655 | n.810G>A | non_coding_transcript_exon_variant | 0.89 |
rrs | 1472655 | n.810G>T | non_coding_transcript_exon_variant | 0.89 |
rrs | 1472658 | n.813G>A | non_coding_transcript_exon_variant | 0.44 |
rrs | 1472660 | n.815T>C | non_coding_transcript_exon_variant | 0.48 |
rrs | 1472661 | n.816A>G | non_coding_transcript_exon_variant | 0.43 |
rrs | 1472686 | n.841G>T | non_coding_transcript_exon_variant | 0.52 |
rrs | 1472687 | n.842A>T | non_coding_transcript_exon_variant | 0.85 |
rrs | 1472690 | n.845C>A | non_coding_transcript_exon_variant | 0.62 |
rrs | 1472690 | n.845C>T | non_coding_transcript_exon_variant | 0.65 |
rrs | 1472692 | n.847T>C | non_coding_transcript_exon_variant | 0.54 |
rrs | 1472697 | n.852T>C | non_coding_transcript_exon_variant | 0.35 |
rrs | 1472707 | n.862A>T | non_coding_transcript_exon_variant | 0.31 |
rrs | 1472713 | n.868T>C | non_coding_transcript_exon_variant | 0.37 |
rrs | 1472714 | n.869A>G | non_coding_transcript_exon_variant | 0.5 |
rrs | 1472716 | n.871C>T | non_coding_transcript_exon_variant | 0.37 |
rrs | 1472742 | n.897C>T | non_coding_transcript_exon_variant | 0.44 |
rrs | 1472744 | n.899A>G | non_coding_transcript_exon_variant | 0.45 |
rrs | 1472767 | n.922G>A | non_coding_transcript_exon_variant | 0.15 |
rrs | 1472779 | n.934G>A | non_coding_transcript_exon_variant | 0.17 |
rrs | 1472781 | n.936C>T | non_coding_transcript_exon_variant | 0.5 |
rrs | 1472790 | n.945T>C | non_coding_transcript_exon_variant | 0.25 |
rrs | 1472793 | n.948A>T | non_coding_transcript_exon_variant | 0.68 |
rrs | 1472803 | n.958T>A | non_coding_transcript_exon_variant | 0.72 |
rrs | 1472824 | n.979T>A | non_coding_transcript_exon_variant | 0.71 |
rrs | 1472825 | n.980G>A | non_coding_transcript_exon_variant | 0.36 |
rrs | 1472827 | n.982G>T | non_coding_transcript_exon_variant | 0.42 |
rrs | 1472828 | n.983T>C | non_coding_transcript_exon_variant | 0.91 |
rrs | 1472895 | n.1050C>T | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472954 | n.1109T>C | non_coding_transcript_exon_variant | 0.77 |
rrs | 1472956 | n.1111T>C | non_coding_transcript_exon_variant | 0.88 |
rrs | 1472957 | n.1112C>T | non_coding_transcript_exon_variant | 0.81 |
rrs | 1472958 | n.1113A>G | non_coding_transcript_exon_variant | 0.14 |
rrs | 1472973 | n.1128A>G | non_coding_transcript_exon_variant | 0.94 |
rrs | 1472973 | n.1128A>T | non_coding_transcript_exon_variant | 0.86 |
rrs | 1472974 | n.1129A>G | non_coding_transcript_exon_variant | 0.13 |
rrs | 1472988 | n.1143T>C | non_coding_transcript_exon_variant | 0.17 |
rrs | 1472990 | n.1145A>G | non_coding_transcript_exon_variant | 0.91 |
rrs | 1472992 | n.1147A>G | non_coding_transcript_exon_variant | 0.61 |
rrs | 1473005 | n.1160C>T | non_coding_transcript_exon_variant | 0.75 |
rrs | 1473035 | n.1190G>A | non_coding_transcript_exon_variant | 1.0 |
rrs | 1473055 | n.1210C>T | non_coding_transcript_exon_variant | 1.0 |
rrs | 1473056 | n.1211A>T | non_coding_transcript_exon_variant | 1.0 |
rrs | 1473066 | n.1221A>G | non_coding_transcript_exon_variant | 1.0 |
rrs | 1473080 | n.1235C>T | non_coding_transcript_exon_variant | 0.53 |
rrs | 1473081 | n.1236C>T | non_coding_transcript_exon_variant | 0.79 |
rrs | 1473088 | n.1243A>G | non_coding_transcript_exon_variant | 1.0 |
rrs | 1473093 | n.1248C>T | non_coding_transcript_exon_variant | 0.9 |
rrs | 1473100 | n.1255G>A | non_coding_transcript_exon_variant | 1.0 |
rrs | 1473101 | n.1256C>T | non_coding_transcript_exon_variant | 0.43 |
rrs | 1473102 | n.1257C>T | non_coding_transcript_exon_variant | 0.43 |
rrs | 1473104 | n.1259C>T | non_coding_transcript_exon_variant | 1.0 |
rrs | 1473110 | n.1265T>G | non_coding_transcript_exon_variant | 1.0 |
rrs | 1473111 | n.1266A>G | non_coding_transcript_exon_variant | 1.0 |
rrs | 1473115 | n.1270G>T | non_coding_transcript_exon_variant | 0.22 |
rrs | 1473121 | n.1276T>C | non_coding_transcript_exon_variant | 0.77 |
rrs | 1473123 | n.1278A>T | non_coding_transcript_exon_variant | 0.94 |
rrs | 1473129 | n.1284C>T | non_coding_transcript_exon_variant | 0.13 |
rrs | 1473130 | n.1285G>A | non_coding_transcript_exon_variant | 0.67 |
rrs | 1473145 | n.1300C>T | non_coding_transcript_exon_variant | 0.93 |
rrs | 1473148 | n.1303G>T | non_coding_transcript_exon_variant | 0.18 |
rrs | 1473163 | n.1318C>A | non_coding_transcript_exon_variant | 0.15 |
rrs | 1473166 | n.1321G>A | non_coding_transcript_exon_variant | 0.93 |
rrs | 1473172 | n.1327T>G | non_coding_transcript_exon_variant | 0.82 |
rrs | 1473173 | n.1328C>T | non_coding_transcript_exon_variant | 0.85 |
rrs | 1473221 | n.1376C>T | non_coding_transcript_exon_variant | 0.86 |
rrs | 1473252 | n.1407T>C | non_coding_transcript_exon_variant | 0.98 |
rrs | 1473259 | n.1414C>T | non_coding_transcript_exon_variant | 0.98 |
rrs | 1473276 | n.1431A>C | non_coding_transcript_exon_variant | 1.0 |
rrs | 1473277 | n.1432G>A | non_coding_transcript_exon_variant | 0.9 |
rrs | 1473301 | n.1456T>G | non_coding_transcript_exon_variant | 1.0 |
rrs | 1473316 | n.1471C>T | non_coding_transcript_exon_variant | 1.0 |
rrl | 1473384 | n.-274A>G | upstream_gene_variant | 0.67 |
rrl | 1474181 | n.524C>A | non_coding_transcript_exon_variant | 1.0 |
rrl | 1474184 | n.527C>T | non_coding_transcript_exon_variant | 1.0 |
rrl | 1474197 | n.540C>T | non_coding_transcript_exon_variant | 0.88 |
rrl | 1474199 | n.542G>C | non_coding_transcript_exon_variant | 0.7 |
rrl | 1474201 | n.545delT | non_coding_transcript_exon_variant | 1.0 |
rrl | 1474201 | n.545T>A | non_coding_transcript_exon_variant | 1.0 |
rrl | 1474249 | n.592G>T | non_coding_transcript_exon_variant | 1.0 |
rrl | 1474253 | n.596A>T | non_coding_transcript_exon_variant | 0.13 |
rrl | 1474256 | n.599T>A | non_coding_transcript_exon_variant | 0.15 |
rrl | 1474264 | n.607T>G | non_coding_transcript_exon_variant | 0.43 |
rrl | 1474266 | n.609T>C | non_coding_transcript_exon_variant | 0.43 |
rrl | 1474269 | n.612C>T | non_coding_transcript_exon_variant | 0.71 |
rrl | 1474271 | n.614A>G | non_coding_transcript_exon_variant | 0.29 |
rrl | 1474275 | n.618T>G | non_coding_transcript_exon_variant | 0.6 |
rrl | 1474282 | n.625G>A | non_coding_transcript_exon_variant | 1.0 |
rrl | 1474282 | n.625G>T | non_coding_transcript_exon_variant | 1.0 |
rrl | 1474287 | n.630T>C | non_coding_transcript_exon_variant | 0.5 |
rrl | 1474288 | n.631C>T | non_coding_transcript_exon_variant | 0.75 |
rrl | 1474307 | n.650G>T | non_coding_transcript_exon_variant | 0.75 |
rrl | 1474310 | n.653T>G | non_coding_transcript_exon_variant | 1.0 |
rrl | 1474326 | n.669T>A | non_coding_transcript_exon_variant | 0.6 |
rrl | 1474348 | n.691C>T | non_coding_transcript_exon_variant | 0.8 |
rrl | 1474351 | n.694G>T | non_coding_transcript_exon_variant | 0.75 |
rrl | 1474353 | n.696A>G | non_coding_transcript_exon_variant | 0.8 |
rrl | 1474355 | n.698A>G | non_coding_transcript_exon_variant | 0.4 |
rrl | 1474362 | n.705A>G | non_coding_transcript_exon_variant | 0.8 |
rrl | 1474454 | n.797G>A | non_coding_transcript_exon_variant | 0.5 |
rrl | 1474467 | n.810A>G | non_coding_transcript_exon_variant | 0.6 |
rrl | 1474488 | n.831G>T | non_coding_transcript_exon_variant | 0.6 |
rrl | 1474495 | n.838G>A | non_coding_transcript_exon_variant | 0.75 |
rrl | 1474498 | n.841G>T | non_coding_transcript_exon_variant | 0.6 |
rrl | 1474505 | n.848C>G | non_coding_transcript_exon_variant | 0.6 |
rrl | 1474508 | n.851C>T | non_coding_transcript_exon_variant | 0.8 |
rrl | 1474516 | n.859C>A | non_coding_transcript_exon_variant | 0.8 |
rrl | 1474527 | n.870T>C | non_coding_transcript_exon_variant | 0.4 |
rrl | 1474529 | n.872A>C | non_coding_transcript_exon_variant | 0.75 |
rrl | 1474530 | n.873G>A | non_coding_transcript_exon_variant | 0.6 |
rrl | 1474537 | n.880G>A | non_coding_transcript_exon_variant | 1.0 |
rrl | 1474539 | n.882C>T | non_coding_transcript_exon_variant | 0.6 |
rrl | 1474540 | n.883T>G | non_coding_transcript_exon_variant | 0.75 |
rrl | 1474542 | n.885A>G | non_coding_transcript_exon_variant | 0.4 |
rrl | 1474551 | n.894G>A | non_coding_transcript_exon_variant | 0.29 |
rrl | 1474630 | n.975delG | non_coding_transcript_exon_variant | 0.4 |
rrl | 1474638 | n.981C>G | non_coding_transcript_exon_variant | 1.0 |
rrl | 1474643 | n.986A>G | non_coding_transcript_exon_variant | 0.5 |
rrl | 1474663 | n.1006C>T | non_coding_transcript_exon_variant | 0.5 |
rrl | 1474672 | n.1015C>T | non_coding_transcript_exon_variant | 1.0 |
rrl | 1474676 | n.1019T>A | non_coding_transcript_exon_variant | 1.0 |
rrl | 1474677 | n.1020A>G | non_coding_transcript_exon_variant | 1.0 |
rrl | 1474692 | n.1035G>A | non_coding_transcript_exon_variant | 1.0 |
rrl | 1474706 | n.1049G>A | non_coding_transcript_exon_variant | 1.0 |
rrl | 1474717 | n.1060A>T | non_coding_transcript_exon_variant | 1.0 |
rrl | 1474734 | n.1077G>A | non_coding_transcript_exon_variant | 1.0 |
rrl | 1474760 | n.1103A>G | non_coding_transcript_exon_variant | 1.0 |
rrl | 1474794 | n.1137C>T | non_coding_transcript_exon_variant | 1.0 |
rrl | 1474824 | n.1167A>G | non_coding_transcript_exon_variant | 1.0 |
rrl | 1474830 | n.1173A>G | non_coding_transcript_exon_variant | 1.0 |
rrl | 1474831 | n.1174A>C | non_coding_transcript_exon_variant | 1.0 |
rrl | 1474831 | n.1174A>T | non_coding_transcript_exon_variant | 1.0 |
rrl | 1474832 | n.1175A>T | non_coding_transcript_exon_variant | 0.6 |
rrl | 1474864 | n.1207C>T | non_coding_transcript_exon_variant | 1.0 |
rrl | 1474903 | n.1246T>C | non_coding_transcript_exon_variant | 1.0 |
rrl | 1474913 | n.1256T>C | non_coding_transcript_exon_variant | 1.0 |
rrl | 1475031 | n.1374G>C | non_coding_transcript_exon_variant | 1.0 |
rrl | 1475059 | n.1403_1404insTA | non_coding_transcript_exon_variant | 1.0 |
rrl | 1475062 | n.1405A>T | non_coding_transcript_exon_variant | 1.0 |
rrl | 1475065 | n.1409_1411delCAA | non_coding_transcript_exon_variant | 1.0 |
rrl | 1475080 | n.1425_1426delCC | non_coding_transcript_exon_variant | 1.0 |
rrl | 1475090 | n.1433A>T | non_coding_transcript_exon_variant | 1.0 |
rrl | 1475104 | n.1447T>A | non_coding_transcript_exon_variant | 1.0 |
rrl | 1475109 | n.1452C>T | non_coding_transcript_exon_variant | 0.5 |
rrl | 1475114 | n.1457C>T | non_coding_transcript_exon_variant | 1.0 |
rrl | 1475124 | n.1467A>T | non_coding_transcript_exon_variant | 1.0 |
rrl | 1475137 | n.1480A>T | non_coding_transcript_exon_variant | 1.0 |
rrl | 1475713 | n.2056C>G | non_coding_transcript_exon_variant | 0.5 |
rrl | 1475715 | n.2058G>A | non_coding_transcript_exon_variant | 1.0 |
rrl | 1475715 | n.2058G>C | non_coding_transcript_exon_variant | 1.0 |
rrl | 1475716 | n.2059A>G | non_coding_transcript_exon_variant | 0.4 |
rrl | 1475747 | n.2090A>C | non_coding_transcript_exon_variant | 0.67 |
rrl | 1475752 | n.2095C>T | non_coding_transcript_exon_variant | 0.67 |
rrl | 1475753 | n.2096C>G | non_coding_transcript_exon_variant | 1.0 |
rrl | 1475756 | n.2099T>C | non_coding_transcript_exon_variant | 0.67 |
rrl | 1475758 | n.2101A>G | non_coding_transcript_exon_variant | 1.0 |
rrl | 1475762 | n.2105G>T | non_coding_transcript_exon_variant | 1.0 |
rrl | 1475763 | n.2106C>T | non_coding_transcript_exon_variant | 0.67 |
rrl | 1475764 | n.2107A>C | non_coding_transcript_exon_variant | 1.0 |
rrl | 1475765 | n.2108A>G | non_coding_transcript_exon_variant | 1.0 |
rrl | 1475775 | n.2118G>T | non_coding_transcript_exon_variant | 0.67 |
rrl | 1475777 | n.2120A>G | non_coding_transcript_exon_variant | 1.0 |
rrl | 1475777 | n.2120A>T | non_coding_transcript_exon_variant | 1.0 |
rrl | 1475781 | n.2124T>G | non_coding_transcript_exon_variant | 0.33 |
rrl | 1475881 | n.2224T>C | non_coding_transcript_exon_variant | 0.21 |
rrl | 1475883 | n.2226A>C | non_coding_transcript_exon_variant | 1.0 |
rrl | 1475884 | n.2227A>G | non_coding_transcript_exon_variant | 1.0 |
rrl | 1475892 | n.2235A>G | non_coding_transcript_exon_variant | 0.5 |
rrl | 1475896 | n.2239A>G | non_coding_transcript_exon_variant | 0.6 |
rrl | 1475898 | n.2241A>G | non_coding_transcript_exon_variant | 0.7 |
rrl | 1475899 | n.2242G>A | non_coding_transcript_exon_variant | 0.7 |
rrl | 1475900 | n.2243A>G | non_coding_transcript_exon_variant | 0.3 |
rrl | 1475902 | n.2245T>C | non_coding_transcript_exon_variant | 0.3 |
rrl | 1475906 | n.2249C>T | non_coding_transcript_exon_variant | 0.6 |
rrl | 1475916 | n.2259C>G | non_coding_transcript_exon_variant | 1.0 |
rrl | 1475937 | n.2280A>T | non_coding_transcript_exon_variant | 0.8 |
rrl | 1475943 | n.2286G>A | non_coding_transcript_exon_variant | 0.4 |
rrl | 1475970 | n.2313C>T | non_coding_transcript_exon_variant | 1.0 |
rrl | 1475977 | n.2320A>G | non_coding_transcript_exon_variant | 1.0 |
rrl | 1476131 | n.2474C>T | non_coding_transcript_exon_variant | 1.0 |
rrl | 1476164 | n.2507A>T | non_coding_transcript_exon_variant | 0.75 |
rrl | 1476179 | n.2522C>T | non_coding_transcript_exon_variant | 0.75 |
rrl | 1476194 | n.2537A>T | non_coding_transcript_exon_variant | 1.0 |
rrl | 1476200 | n.2543A>T | non_coding_transcript_exon_variant | 1.0 |
rrl | 1476204 | n.2547C>T | non_coding_transcript_exon_variant | 1.0 |
rrl | 1476207 | n.2550T>C | non_coding_transcript_exon_variant | 1.0 |
rrl | 1476214 | n.2557G>T | non_coding_transcript_exon_variant | 1.0 |
rrl | 1476215 | n.2558C>T | non_coding_transcript_exon_variant | 1.0 |
rrl | 1476224 | n.2567A>G | non_coding_transcript_exon_variant | 0.25 |
rrl | 1476225 | n.2568T>G | non_coding_transcript_exon_variant | 0.75 |
rrl | 1476227 | n.2570C>T | non_coding_transcript_exon_variant | 0.42 |
rrl | 1476229 | n.2572C>G | non_coding_transcript_exon_variant | 0.62 |
rrl | 1476229 | n.2572C>T | non_coding_transcript_exon_variant | 0.62 |
rrl | 1476235 | n.2578A>G | non_coding_transcript_exon_variant | 0.15 |
rrl | 1476250 | n.2593C>G | non_coding_transcript_exon_variant | 0.43 |
rrl | 1476251 | n.2594T>C | non_coding_transcript_exon_variant | 0.81 |
rrl | 1476252 | n.2595T>A | non_coding_transcript_exon_variant | 0.35 |
rrl | 1476256 | n.2599A>G | non_coding_transcript_exon_variant | 0.19 |
rrl | 1476257 | n.2600G>C | non_coding_transcript_exon_variant | 0.43 |
rrl | 1476260 | n.2603A>G | non_coding_transcript_exon_variant | 1.0 |
rrl | 1476267 | n.2610G>T | non_coding_transcript_exon_variant | 0.15 |
rrl | 1476280 | n.2623A>C | non_coding_transcript_exon_variant | 0.9 |
rrl | 1476359 | n.2702C>G | non_coding_transcript_exon_variant | 0.97 |
rrl | 1476381 | n.2724G>C | non_coding_transcript_exon_variant | 0.98 |
rrl | 1476428 | n.2771C>T | non_coding_transcript_exon_variant | 0.9 |
rrl | 1476429 | n.2772A>T | non_coding_transcript_exon_variant | 0.86 |
rrl | 1476466 | n.2809C>T | non_coding_transcript_exon_variant | 0.96 |
rrl | 1476481 | n.2824T>C | non_coding_transcript_exon_variant | 0.81 |
rrl | 1476506 | n.2849T>C | non_coding_transcript_exon_variant | 1.0 |
rrl | 1476513 | n.2856G>T | non_coding_transcript_exon_variant | 1.0 |
rrl | 1476515 | n.2858C>T | non_coding_transcript_exon_variant | 1.0 |
rrl | 1476525 | n.2868A>G | non_coding_transcript_exon_variant | 1.0 |
fabG1 | 1673359 | c.-81T>A | upstream_gene_variant | 0.33 |
rpsA | 1833655 | c.114C>A | synonymous_variant | 0.25 |
rpsA | 1833727 | c.186G>C | synonymous_variant | 0.14 |
rpsA | 1833732 | p.Pro64Leu | missense_variant | 0.14 |
rpsA | 1833736 | c.195C>T | synonymous_variant | 0.15 |
rpsA | 1833742 | c.201A>G | synonymous_variant | 0.15 |
rpsA | 1834234 | c.693G>C | synonymous_variant | 0.57 |
rpsA | 1834240 | c.699T>C | synonymous_variant | 0.57 |
rpsA | 1834246 | c.705G>T | synonymous_variant | 0.25 |
rpsA | 1834249 | c.708T>C | synonymous_variant | 0.5 |
rpsA | 1834261 | c.720A>G | synonymous_variant | 0.56 |
rpsA | 1834264 | c.723G>C | synonymous_variant | 0.56 |
rpsA | 1834273 | c.732C>T | synonymous_variant | 0.18 |
rpsA | 1834294 | c.753G>C | synonymous_variant | 0.38 |
rpsA | 1834298 | p.Gln253Glu | missense_variant | 0.55 |
rpsA | 1834306 | c.765T>C | synonymous_variant | 0.5 |
rpsA | 1834307 | p.Asp256Gln | missense_variant | 0.5 |
rpsA | 1834312 | c.771G>A | synonymous_variant | 0.5 |
rpsA | 1834327 | c.786G>T | synonymous_variant | 0.5 |
rpsA | 1834345 | c.804C>T | synonymous_variant | 0.4 |
rpsA | 1834348 | c.807T>C | synonymous_variant | 0.33 |
rpsA | 1834354 | c.813G>C | synonymous_variant | 0.33 |
rpsA | 1834357 | c.816T>C | synonymous_variant | 0.22 |
rpsA | 1834360 | c.819G>C | synonymous_variant | 0.22 |
rpsA | 1834361 | c.820T>C | synonymous_variant | 0.25 |
rpsA | 1834366 | c.825A>G | synonymous_variant | 0.25 |
rpsA | 1834375 | c.834G>C | synonymous_variant | 0.33 |
rpsA | 1834378 | c.837T>C | synonymous_variant | 0.3 |
rpsA | 1834387 | c.846C>T | synonymous_variant | 0.3 |
rpsA | 1834411 | c.870T>C | synonymous_variant | 0.33 |
rpsA | 1834417 | c.876G>C | synonymous_variant | 0.33 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
tlyA | 1918454 | p.Ser172Leu | missense_variant | 0.25 |
katG | 2154724 | p.Arg463Leu | missense_variant | 1.0 |
PPE35 | 2167745 | p.Thr956Arg | missense_variant | 0.33 |
PPE35 | 2167926 | p.Leu896Ser | missense_variant | 1.0 |
PPE35 | 2167955 | c.2658A>C | synonymous_variant | 0.4 |
PPE35 | 2167965 | p.Ala883Gly | missense_variant | 0.4 |
PPE35 | 2167967 | c.2646A>C | synonymous_variant | 0.4 |
Rv1979c | 2221826 | p.Phe447Leu | missense_variant | 1.0 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
pncA | 2289047 | c.195C>T | synonymous_variant | 1.0 |
pncA | 2289365 | c.-125delC | upstream_gene_variant | 1.0 |
ahpC | 2726105 | c.-88G>A | upstream_gene_variant | 1.0 |
folC | 2746165 | c.1434T>G | synonymous_variant | 1.0 |
ribD | 2986864 | p.Ala9Val | missense_variant | 0.2 |
ribD | 2987187 | c.349C>T | synonymous_variant | 1.0 |
thyX | 3067481 | c.465C>A | synonymous_variant | 0.4 |
thyA | 3074648 | c.-177T>G | upstream_gene_variant | 0.25 |
ald | 3086788 | c.-32T>C | upstream_gene_variant | 1.0 |
fprA | 3473996 | c.-11_-10insA | upstream_gene_variant | 1.0 |
alr | 3841206 | p.His72Leu | missense_variant | 0.5 |
clpC1 | 4038744 | p.Thr654Lys | missense_variant | 0.29 |
embC | 4242075 | p.Arg738Gln | missense_variant | 1.0 |
embA | 4242643 | c.-590C>T | upstream_gene_variant | 1.0 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |
gid | 4407588 | c.615A>G | synonymous_variant | 1.0 |
gid | 4407713 | p.Gly164Arg | missense_variant | 1.0 |