lineage | Count |
---|---|
lineage4.8 | 119 |
lineage4.6.2.2 | 12 |
lineage4.1.2.1 | 69 |
La1.8.1 | 4 |
lineage4.1.1.1 | 10 |
lineage2.2.1 | 83 |
lineage4.3.4.2;lineage4.9 | 1 |
lineage2.2.2 | 9 |
lineage3.1.1 | 6 |
lineage4.3.4.2 | 5 |
La1.7.X-unk4 | 1 |
lineage4.9 | 77 |
lineage4.4.2 | 5 |
lineage3 | 55 |
lineage4.3.3 | 22 |
lineage3;lineage4.9 | 5 |
lineage4.1.1.3 | 14 |
lineage3.1.2.1 | 6 |
lineage4.6.1.2 | 6 |
lineage1.1.3 | 3 |
lineage1.1.3.1 | 7 |
lineage4.3.4.1 | 11 |
lineage4.4.1.1 | 20 |
lineage4.2.1 | 9 |
lineage2.2.1;lineage4 | 2 |
lineage4.7 | 8 |
2 | |
La1.6 | 2 |
lineage4.6.1.1 | 3 |
lineage1.1.2 | 14 |
lineage4.8.1 | 4 |
lineage4.1.2.1;lineage4.4.1 | 1 |
lineage4.8.2 | 1 |
lineage4.3.2 | 7 |
lineage1.2.1.2.1 | 6 |
lineage4.3.2.1 | 7 |
lineage1.2.2.2 | 7 |
lineage4.2.2.1 | 3 |
lineage4.1 | 3 |
lineage4.4.1.2 | 2 |
lineage4.1.3 | 5 |
lineage4.1.1.3.1;lineage4.9 | 1 |
lineage1.2.1.1 | 1 |
lineage4.1.2 | 10 |
lineage6.3.1 | 2 |
lineage4.3.4.2.1 | 13 |
lineage4.6 | 1 |
lineage3;lineage4 | 3 |
lineage4.1.4 | 1 |
lineage4.2.2 | 2 |
lineage4.5 | 4 |
lineage4.9.1 | 1 |
La1.7.1 | 2 |
lineage2.2.1.1 | 6 |
lineage2.2.1;lineage4.9 | 1 |
lineage4.2.2.2 | 5 |
lineage4.1.2.1;lineage4.9 | 2 |
La1.3;lineage1.2.2.2 | 2 |
lineage4.3.3;lineage4.8 | 4 |
lineage1.1.3.2 | 1 |
lineage3.1.1;lineage4 | 1 |
lineage4.3;lineage4.9 | 1 |
lineage1.2.2 | 2 |
lineage4.8.2;lineage4.9 | 1 |
lineage4.4.1.1.1 | 3 |
lineage1.1.1.1 | 3 |
lineage5.1.1 | 1 |
lineage2;lineage4 | 1 |
lineage4.2.1.1 | 3 |
lineage1.1.2;lineage6.2.3 | 1 |
lineage4.1;lineage4.9 | 1 |
lineage4 | 5 |
lineage4.1.2.1;lineage4.4.1.1 | 1 |
La1.8.2 | 1 |
lineage3.1.2.2 | 1 |
lineage4.8;lineage4.9 | 2 |
lineage4.2.1.1;lineage4.3.3 | 1 |
lineage3.1.2 | 4 |
lineage4.1.1.3.1 | 1 |
lineage1.1.3.3 | 3 |
lineage4.3.3;lineage4.9 | 1 |
lineage3.1.2.1;lineage4.9 | 1 |
lineage2.2.1;lineage4.2.1 | 1 |
lineage3.1.2;lineage4.1.1.3.1 | 1 |
lineage4.3 | 2 |
lineage4.3.1 | 1 |
La1.2.BCG | 1 |
lineage4.6.5 | 3 |
lineage3.1 | 2 |
La1.3 | 1 |
lineage3.1.1;lineage4.9 | 1 |
lineage6.2.3 | 1 |
lineage1.1.1 | 1 |
lineage4.3.4;lineage4.9 | 1 |
lineage4.3.1.1 | 2 |
lineage6.1.3 | 1 |
lineage5 | 2 |
La2 | 1 |
lineage4.3.4.1;lineage4.9 | 1 |
spoligotype | Count |
---|---|
None | 760 |
ID | Drug resistance | Lineage | Country iso2 | ERR4815909 | Other | lineage4.8 | None | ERR4814761 | Other | lineage4.8 | gb | ERR4819641 | Other | lineage4.6.2.2 | None | ERR4819622 | Other | lineage4.1.2.1 | None | ERR4820265 | Other | lineage4.1.2.1 | None | ERR3468488 | Other | La1.8.1 | None | ERR4818370 | Other | lineage4.1.1.1 | None | ERR4816029 | Other | lineage2.2.1 | None | ERR10796631 | Other | lineage4.3.4.2;lineage4.9 | None | DRR185024 | Other | lineage2.2.2 | None | ERR4820410 | RR-TB | lineage3.1.1 | None | ERR4815499 | Sensitive | lineage4.3.4.2 | None | ERR3445487 | Other | La1.7.X-unk4 | None | SRR1180446 | Other | lineage4.9 | None | ERR4815301 | Other | lineage4.4.2 | None | SRR9971065 | RR-TB | lineage2.2.1 | None | ERR4818522 | Other | lineage3 | None | ERR4814748 | Other | lineage4.8 | None | ERR10796578 | Other | lineage2.2.1 | None | ERR911929 | Other | lineage4.8 | None | ERR4821679 | Other | lineage4.3.3 | None | SRR1184329 | Other | lineage4.9 | None | ERR4816183 | Other | lineage3;lineage4.9 | None | ERR4816696 | Other | lineage3 | None | ERR4830549 | MDR-TB | lineage4.1.1.3 | None | ERR978734_ERR978733_ERR978735 | RR-TB | lineage4.8 | None | ERR4814932 | Other | lineage4.1.1.1 | None | ERR978735 | Other | lineage4.8 | None | SRR8758877 | MDR-TB | lineage4.1.1.1 | None | ERR4816087 | Other | lineage4.1.2.1 | None | ERR4818752 | Other | lineage3 | None | ERR4819011 | Other | lineage3.1.2.1 | None | ERR4818313 | Other | lineage2.2.1 | None | ERR4820649 | Sensitive | lineage4.6.1.2 | None | ERR4818351 | Other | lineage1.1.3 | None | ERR4820922 | Other | lineage4.1.2.1 | gb | ERR4820833 | Other | lineage3;lineage4.9 | None | ERR4819864 | RR-TB | lineage1.1.3.1 | None | ERR2510835 | Sensitive | lineage4.3.3 | it | ERR2984800 | Pre-XDR-TB | lineage4.3.4.1 | None | ERR4816510 | Other | lineage4.1.2.1 | None | SRR6046463 | Other | lineage4.4.1.1 | None | SRR7645972 | MDR-TB | lineage4.2.1 | None | DRR034348 | Other | lineage2.2.1 | None | ERR867525 | Pre-XDR-TB | lineage2.2.1 | None | ERR1034647 | MDR-TB | lineage4.1.1.3 | None | ERR4821318 | HR-TB | lineage4.6.2.2 | gb | ERR4819550 | Other | lineage3 | None | SRR11342655 | MDR-TB | lineage2.2.1 | None | ERR4820586 | Other | lineage3 | gb | ERR4819491 | Other | lineage4.1.2.1 | None | SRR11342664 | MDR-TB | lineage2.2.2 | None | ERR4816118 | Other | lineage4.9 | gb | ERR4816464 | Other | lineage3 | None | ERR4816756 | Other | lineage2.2.1;lineage4 | None | ERR4821360 | Sensitive | lineage4.1.2.1 | None | ERR10796636 | Other | lineage4.1.2.1 | None | ERR4821761 | Other | lineage3 | gb | SRR1735598 | RR-TB | lineage4.9 | None | ERR4821288 | Other | lineage4.7 | None | SRR1049582 | MDR-TB | lineage4.6.1.2 | None | SRR5818469 | Other | lineage4.9 | None | ERR4817069 | RR-TB | None | ERR3283008 | Other | lineage4.9 | None | ERR4814355 | Other | La1.6 | gb | ERR4816872 | Other | lineage4.7 | None | ERR4819175 | Other | lineage4.1.1.3 | gb | ERR1198990 | Other | lineage4.6.1.1 | ug | ERR4814775 | Other | lineage1.1.2 | None | ERR4815255 | Other | lineage4.4.2 | None | ERR4820846 | RR-TB | lineage4.6.2.2 | gb | SRR1181256 | Other | lineage4.9 | None | ERR017781 | Other | lineage3 | None | ERR038289 | Other | lineage4.3.3 | None | SRR19303907 | Other | lineage4.8 | None | SRR7070195 | Sensitive | lineage3.1.2.1 | None | SRR6045909 | Other | lineage4.8.1 | None | SRR18911231 | Sensitive | lineage4.1.1.3 | None | SRR7646018 | MDR-TB | lineage4.2.1 | None | ERR978727 | Other | lineage4.8 | None | SRR1049725 | Other | lineage4.1.2.1;lineage4.4.1 | None | ERR4816745 | Pre-XDR-TB | lineage2.2.1 | None | ERR4817915 | Other | lineage4.9 | None | ERR4816493 | Other | lineage4.1.2.1 | None | ERR4816818 | Other | lineage4.8.2 | None | ERR10796561 | Other | lineage4.3.2 | None | ERR10796591 | Other | lineage4.9 | None | SRR18002947 | MDR-TB | lineage2.2.1 | None | ERR4814911 | Other | lineage4.3.3 | None | ERR4821214 | Other | lineage1.2.1.2.1 | None | ERR4821523 | Pre-XDR-TB | lineage2.2.1 | gb | SRR11349147 | RR-TB | lineage4.3.2.1 | None | SRR1175472 | RR-TB | lineage4.3.4.1 | None | ERR4815905 | Other | lineage1.2.2.2 | gb | ERR4815910 | Other | lineage4.1.2.1 | None | ERR4816856 | Other | lineage4.1.2.1 | None | SRR16149126 | MDR-TB | lineage4.2.2.1 | None | ERR2513082 | Other | lineage4.1.2.1 | gb | ERR4819765 | Other | lineage4.1 | None | ERR4818964 | Other | lineage1.2.1.2.1 | None | ERR4819007 | Other | lineage2.2.1 | None | ERR4819073 | Other | lineage4.1.2.1 | None | ERR4819082 | Other | lineage1.1.2 | gb | ERR4820151 | Other | lineage4.8 | None | ERR4821736 | HR-TB | lineage2.2.1 | gb | ERR4815640 | Sensitive | lineage3 | gb | ERR4815777 | Other | lineage4.9 | None | ERR4817475 | Other | lineage4.1.1.3 | gb | SRR6397733 | Other | lineage4.4.1.2 | None | ERR4819720 | Other | lineage3.1.2.1 | gb | ERR978733 | RR-TB | lineage4.8 | None | ERR4815780 | MDR-TB | lineage4.1.3 | None | ERR4820968 | Sensitive | lineage4.1.2.1 | gb | SRR5007161 | RR-TB | lineage4.1.1.3.1;lineage4.9 | None | ERR978755 | RR-TB | lineage4.8 | None | ERR4815784 | Other | lineage2.2.1 | gb | ERR4815869 | Sensitive | lineage3 | gb | ERR4816866 | Other | lineage2.2.1 | None | ERR4816928 | HR-TB | lineage1.2.2.2 | None | ERR4822085 | Other | lineage4.8 | gb | ERR2228910 | Other | lineage4.8 | None | ERR911929_ERR911930 | Other | lineage4.8 | None | ERR2027209 | MDR-TB | lineage1.2.1.1 | None | ERR10796565 | Other | lineage4.9 | None | SRR18003004 | Pre-XDR-TB | lineage2.2.2 | None | ERR867527 | Pre-XDR-TB | lineage2.2.1 | None | SRR11342658 | RR-TB | lineage4.1.2 | None | SRR11342668 | Pre-XDR-TB | lineage4.8.1 | None | ERR10219876 | Other | lineage4.3.4.2 | None | ERR4816610 | Other | lineage4.3.3 | None | ERR4816833 | Other | lineage4.1.1.3 | None | ERR4818440 | Other | lineage6.3.1 | None | ERR4818624 | Other | lineage4.3.4.2.1 | None | ERR4815121 | HR-TB | lineage4.6.2.2 | None | ERR4819528 | RR-TB | lineage3 | None | ERR4817189 | Other | lineage4.7 | None | ERR4821610 | Other | lineage4.3.2 | None | ERR978766 | RR-TB | lineage4.8 | None | ERR2446154 | Sensitive | lineage4.4.1.1 | nl | ERR4816699 | Other | lineage4.6 | None | ERR2228900 | Other | lineage4.8 | None | ERR4829309 | Other | lineage4.8 | None | ERR4817055 | Other | lineage4.1.2.1 | None | ERR126597 | HR-TB | lineage4.4.1.2 | None | SRR3619841 | Pre-XDR-TB | lineage2.2.1 | None | SRR1173740 | Other | lineage3;lineage4 | None | ERR10796568 | Other | lineage4.9 | None | ERR4819982 | Sensitive | lineage2.2.1 | None | ERR10796554 | Sensitive | lineage4.1.2 | None | ERR3275615 | Sensitive | lineage4.4.1.1 | nl | ERR4822105 | Other | lineage4.1.4 | None | ERR10796553 | Other | lineage4.9 | None | SRR5818398 | Other | lineage4.9 | None | ERR4821341 | Other | lineage4.3.4.1 | None | ERR2514215 | Other | lineage2.2.1 | gb | ERR978746 | RR-TB | lineage4.8 | None | ERR4819324 | Other | lineage4.8 | gb | ERR4818691 | Other | lineage4.8 | None | DRR188816 | Sensitive | lineage4.2.2 | None | ERR4817294 | Other | lineage4.1.2 | None | ERR4814938 | Other | lineage4.3.2.1 | None | ERR4817780 | Other | lineage4.7 | None | ERR4817826 | Other | lineage4.5 | None | ERR4816944 | Other | lineage2.2.2 | None | ERR4816969 | Other | lineage4.8 | None | ERR4819383 | RR-TB | lineage4.9 | None | ERR2228965 | Other | lineage4.8 | None | ERR4819119 | HR-TB | lineage1.2.1.2.1 | gb | ERR4820717 | Other | lineage1.1.3 | None | ERR037504 | Other | lineage4.9.1 | None | ERR4814617 | Other | lineage1.1.3.1 | None | SRR1173185 | Other | lineage4.9 | None | ERR4817309 | Other | lineage4.5 | gb | ERR2229147 | Other | lineage4.8 | None | ERR867571 | Other | lineage4.9 | None | SRR9971112 | Other | lineage2.2.1 | None | SRR5818408 | Other | lineage4.9 | None | ERR2228813 | Other | lineage4.8 | None | ERR10796598 | Other | lineage4.9 | None | ERR2510804 | Other | lineage2.2.1 | None | ERR4815502 | Other | lineage4.1 | None | SRR18002998 | Pre-XDR-TB | lineage2.2.2 | None | SRR21469202 | Other | La1.7.1 | None | SRR7131195 | Other | lineage2.2.1 | None | ERR2229811 | Other | lineage4.8 | dk | ERR4821222 | Other | lineage4.3.2.1 | None | SRR9971168 | Other | lineage4.3.2.1 | None | SRR1792011 | Other | La1.8.1 | None | ERR10796566 | Other | lineage4.9 | None | SRR1062918 | Other | lineage3 | None | ERR5979454 | Pre-XDR-TB | lineage3 | None | SAMEA3501070 | RR-TB | lineage4.8 | None | ERR4814896 | Other | lineage2.2.1.1 | None | ERR4818364 | Other | lineage4.8 | gb | ERR4818892 | MDR-TB | lineage4.2.2.1 | None | ERR4817903 | Other | lineage4.1.2.1 | gb | ERR4817977 | Other | lineage4.8 | gb | ERR4819166 | Other | lineage3 | gb | ERR4816093 | Other | lineage1.1.3 | None | SAMEA3501046 | RR-TB | lineage4.8 | None | SAMEA3501067 | RR-TB | lineage4.8 | None | SRR7645971 | Other | lineage2.2.1 | None | ERR978757 | RR-TB | lineage4.8 | None | ERR4817060 | Other | None | SRR9971046 | MDR-TB | lineage4.8 | None | SRR1049559 | MDR-TB | lineage4.3.4.2.1 | None | ERR4817972 | Other | lineage4.1.1.3 | gb | ERR4820666 | Other | lineage4.8 | gb | ERR4818851 | RR-TB | lineage4.4.1.1 | None | ERR4820161 | Other | lineage3 | None | ERR4820827 | Other | lineage4.1.2 | None | ERR4820907 | Other | lineage4.1.2.1 | gb | ERR4821007 | Other | lineage1.2.2.2 | None | ERR867521 | MDR-TB | lineage2.2.1 | None | SRR1173281 | Other | lineage3 | None | SRR18003024 | RR-TB | lineage2.2.1 | None | SRR18913779 | Sensitive | lineage3 | None | SRR1175491 | MDR-TB | lineage4.3.4.1 | None | ERR4817070 | Other | lineage1.1.2 | None | ERR4817497 | Other | lineage1.1.2 | None | ERR4818977 | Other | lineage4.1.2.1 | None | ERR4819555 | Other | lineage4.8 | None | ERR4820746 | Other | lineage3 | None | SRR17567917 | RR-TB | lineage4.4.1.1 | None | SRR9971372 | MDR-TB | lineage4.1.1.1 | None | ERR4820019 | Other | lineage4.3.4.2.1 | None | ERR4820787 | Other | lineage3.1.1 | gb | SRR1140724 | Other | lineage2.2.1 | None | ERR10796599 | Other | lineage4.8 | None | SRR1175474 | Other | lineage4.9 | None | SRR12708406 | HR-TB | lineage2.2.1;lineage4.9 | None | ERR4769530 | RR-TB | lineage4.9 | None | SRR7645924 | Pre-XDR-TB | lineage4.2.1 | None | SRR18002887 | MDR-TB | lineage2.2.1.1 | None | ERR4816688 | Other | lineage4.2.2.2 | gb | ERR4817547 | Other | lineage4.2.2.1 | None | ERR4818176 | Other | lineage4.1.2.1 | None | ERR10796627 | Other | lineage4.1.2.1;lineage4.9 | None | SRR1140736 | Other | lineage4.1.2.1 | None | ERR4819655 | Other | lineage4.8 | None | ERR4821263 | Other | lineage4.1.3 | gb | ERR4817919 | Sensitive | lineage4.3.4.1 | gb | ERR4815172 | Other | La1.3;lineage1.2.2.2 | None | ERR4815298 | Other | lineage4.3.4.2.1 | None | ERR4816968 | Other | lineage4.2.1 | gb | ERR4817964 | RR-TB | lineage4.1.2.1 | gb | SRR1140716 | Other | lineage3 | None | SRR1049677 | MDR-TB | lineage4.3.3;lineage4.8 | None | SRR1173170 | Other | lineage4.9 | None | ERR10796560 | Other | lineage4.9 | None | ERR4818261 | Other | lineage1.1.2 | None | ERR176580 | Sensitive | lineage4.3.4.2.1 | None | ERR978750 | RR-TB | lineage4.8 | None | ERR4821812 | Sensitive | lineage4.8 | gb | ERR4819414 | Sensitive | lineage1.1.3.1 | gb | SRR1049560 | MDR-TB | lineage4.3.4.2.1 | None | SRR11567803 | Pre-XDR-TB | lineage2.2.1 | None | SRR7131149 | Pre-XDR-TB | lineage4.8 | None | ERR2851354 | Other | lineage4.9 | None | ERR4815919 | Other | lineage4.8 | None | SRR7645906 | Other | lineage2.2.1 | None | SRR7755657 | Other | lineage4.8 | None | SRR1049675 | HR-TB | lineage2.2.1 | None | SRR5007204 | Other | lineage4.1.2.1 | None | ERR4818565 | Other | lineage4.8 | None | ERR4817710 | Other | lineage1.1.2 | None | ERR2514801 | Other | lineage1.1.3.2 | gb | ERR4808964 | RR-TB | lineage2.2.1 | None | SRR9971114 | Other | lineage2.2.1 | None | SRR6046275 | Other | lineage3.1.1;lineage4 | None | ERR4819131 | Other | lineage4.8 | None | ERR4821981 | Other | lineage4.1.2.1 | None | SRR1181403 | Other | lineage4.9 | None | ERR4816549 | Other | lineage2.2.1 | None | SRR7069922 | Other | lineage2.2.1 | None | ERR978746_ERR978747_ERR978748 | RR-TB | lineage4.8 | None | ERR4822261 | RR-TB | lineage2.2.1 | None | ERR2513382 | RR-TB | lineage4.1.1.3 | None | ERR4821176 | Other | lineage2.2.1 | None | SRR5818395 | Sensitive | lineage4.9 | None | SRR7069347 | Other | lineage4.1.2.1 | None | SRR023450 | RR-TB | lineage2.2.1 | None | ERR4822104 | Other | lineage3;lineage4.9 | None | ERR4819583 | Other | lineage1.1.2 | gb | ERR867568 | Other | lineage2.2.1;lineage4 | None | ERR4814341 | Other | lineage4.7 | None | ERR4816310 | HR-TB | lineage4.6.1.2 | None | ERR036207 | Other | lineage4.3;lineage4.9 | None | SRR1062919 | HR-TB | lineage2.2.1 | None | ERR4818173 | Other | lineage2.2.1 | None | ERR4815467 | Other | lineage3 | None | ERR4819824 | Sensitive | lineage4.4.2 | gb | ERR4820188 | Other | lineage3 | gb | ERR4817426 | Other | lineage4.1 | gb | ERR4817665 | Other | lineage4.8 | None | ERR4818988 | Other | lineage1.2.2 | None | ERR4821602 | Other | lineage4.8 | None | ERR4816043 | Other | lineage4.2.2 | None | ERR978767_ERR978765_ERR978766 | RR-TB | lineage4.8 | None | ERR978747 | Other | lineage4.8 | None | SRR7535047 | RR-TB | lineage4.6.1.1 | None | ERR4819265 | HR-TB | lineage4.3.4.1 | None | SAMN02380982 | MDR-TB | lineage4.3.4.2.1 | None | ERR4814496 | Sensitive | lineage4.1.2 | None | ERR4815956 | Other | lineage1.1.2 | None | ERR4816951 | HR-TB | lineage4.1.2.1 | gb | ERR4817175 | Other | lineage4.8 | None | ERR1023509 | Other | lineage4.9 | None | ERR867522 | Pre-XDR-TB | lineage2.2.1 | None | SRR5007168 | Other | lineage4.8.2;lineage4.9 | None | SRR11342638 | MDR-TB | lineage4.4.1.1.1 | None | SRR11342696 | MDR-TB | lineage4.4.1.1.1 | None | ERR4819640 | RR-TB | lineage4.6.2.2 | None | ERR4819140 | Other | lineage4.1.2.1 | None | ERR4817584 | Other | lineage3;lineage4.9 | None | ERR10796552 | Sensitive | lineage4.3.4.1 | None | ERR2886463 | Sensitive | lineage2.2.1 | None | SRR11342644 | MDR-TB | lineage4.4.1.1.1 | None | ERR4814930 | Other | lineage4.4.1.1 | None | ERR4820075 | Other | lineage4.1.2.1 | None | SRR11349153 | RR-TB | lineage4.1.1.1 | None | ERR752012 | HR-TB | lineage1.1.1.1 | None | ERR4820256 | Other | lineage2.2.1 | None | SRR11342647 | MDR-TB | lineage4.1.1.3 | None | ERR4814923 | Sensitive | lineage4.3.2 | None | SRR1062928 | Other | lineage4.1.2.1;lineage4.9 | None | ERR4815849 | Other | lineage3.1.1 | None | ERR4818407 | Other | lineage4.3.2 | None | ERR4818128 | Other | lineage4.1.2.1 | None | ERR502470 | RR-TB | lineage4.9 | None | ERR4818219 | Other | lineage4.3.2.1 | gb | ERR4818226 | Other | lineage4.1.2 | gb | ERR4820572 | Other | lineage1.2.1.2.1 | None | ERR4819217 | Other | La1.3;lineage1.2.2.2 | None | ERR4821958 | Other | lineage4.3.3 | gb | ERR502517 | Other | lineage5.1.1 | None | SRR1792022 | Other | La1.8.1 | None | ERR978726_ERR978727 | RR-TB | lineage4.8 | None | ERR4818449 | Other | lineage4.3.3 | None | ERR1023502 | MDR-TB | lineage2;lineage4 | None | SRR6785281 | Other | lineage4.2.1.1 | None | SRR1062871 | RR-TB | lineage4.3.4.2.1 | None | SRR1196478 | Other | lineage4.9 | None | SRR6046737 | Other | lineage4.9 | None | ERR212114 | Other | lineage4.3.4.2.1 | None | ERR867573 | Other | lineage4.9 | None | ERR4817392 | Sensitive | lineage4.1.2.1 | gb | ERR4817976 | HR-TB | lineage4.1.2.1 | None | ERR4819863 | RR-TB | lineage4.9 | None | ERR978754 | RR-TB | lineage4.8 | None | ERR3324368 | RR-TB | lineage1.1.2;lineage6.2.3 | None | ERR4821791 | Other | lineage4.1.2.1 | None | ERR4815698 | Sensitive | lineage4.7 | None | SAMEA3501052 | RR-TB | lineage4.8 | None | ERR4819329 | Sensitive | lineage4.6.2.2 | None | ERR4821054 | Sensitive | lineage3 | None | ERR10796576 | Sensitive | lineage4.9 | None | ERR10796577 | Other | lineage4.9 | None | ERR2229148 | Other | lineage4.8 | dk | SRR9971122 | MDR-TB | lineage4.8 | None | SRR9971333 | MDR-TB | lineage4.1.1.3 | None | ERR10796635 | Other | lineage4.8 | None | ERR4815517 | Other | lineage1.2.2.2 | None | SRR1173770 | Other | lineage4.9 | None | SRR13423546 | Other | lineage4.4.2 | None | SRR5341365 | Pre-XDR-TB | lineage3 | None | SRR7755649 | MDR-TB | lineage4.2.1 | None | ERR10796555 | Other | lineage4.1.2.1 | None | ERR10796629 | Other | lineage4.1;lineage4.9 | None | ERR978734 | RR-TB | lineage4.8 | None | SRR11342671 | RR-TB | lineage4.1.3 | None | SRR19325518 | MDR-TB | lineage2.2.1 | None | SRR2100067 | Other | lineage4.3.3 | None | ERR4814312 | Other | lineage4 | None | ERR4814699 | HR-TB | lineage4.1.2.1 | gb | ERR4817619 | Other | lineage4.1.2.1 | gb | ERR4818698 | HR-TB | lineage2.2.1 | gb | ERR4821712 | Other | lineage1.2.2.2 | None | ERR978694 | Other | lineage4.8 | None | SRR5818388 | Other | lineage4.9 | None | SRR1049726 | Other | lineage4.1.2.1;lineage4.4.1.1 | None | SRR7069839 | Other | lineage4.8 | None | ERR4815268 | Sensitive | lineage4.8 | None | SRR22424778 | RR-TB | lineage2.2.1.1 | None | ERR4816133 | Other | La1.8.2 | None | ERR4820777 | Sensitive | lineage4.1.2.1 | None | ERR4821325 | Other | lineage3 | None | ERR4822222 | Other | lineage3.1.2.2 | None | ERR2228810 | Other | lineage4.8;lineage4.9 | None | ERR867544 | Other | lineage4.9 | None | ERR867570 | RR-TB | lineage4.9 | None | SRR023487 | RR-TB | lineage2.2.1 | None | ERR4815118 | Other | lineage2.2.2 | None | ERR4815204 | Other | lineage2.2.1.1 | gb | ERR4815362 | Sensitive | lineage1.1.2 | None | ERR4815811 | Other | lineage4.2.1.1 | None | ERR323044 | HR-TB | lineage4.3.4.2.1 | None | ERR2229733 | Other | lineage4.8 | dk | SRR5163959 | Other | lineage4.9 | None | ERR4821286 | Other | lineage4.8 | None | ERR4821719 | Other | lineage3 | gb | ERR978751 | Other | lineage4.8 | None | ERR4818904 | Other | lineage4.8 | None | ERR4819770 | Other | lineage4.8 | gb | ERR10762495 | MDR-TB | lineage2.2.1 | None | SRR1049674 | HR-TB | lineage2.2.1 | None | ERR1815538 | Other | La1.7.1 | None | SAMEA3501063 | RR-TB | lineage4.8 | None | SRR11342662 | MDR-TB | lineage4.8.1 | None | SRR1140712 | MDR-TB | lineage4.6.1.2 | None | SRR7645928 | Other | lineage4.7 | None | ERR4819699 | HR-TB | lineage4.6.2.2 | gb | ERR4820324 | Other | lineage4 | None | ERR4821409 | Other | lineage4.8 | None | ERR4817998 | Other | lineage3 | None | ERR4818556 | Sensitive | lineage3 | None | ERR4820290 | Other | lineage3 | None | SRR10315464 | MDR-TB | lineage4.4.1.1 | None | SRR10993951 | RR-TB | La1.6 | None | ERR978761 | Other | lineage4.8 | None | ERR867542 | HR-TB | lineage4.2.1.1;lineage4.3.3 | None | SRR5818414 | Other | lineage4.9 | None | ERR4821331 | HR-TB | lineage4.8 | None | SRR10315556 | Sensitive | lineage2.2.1 | None | ERR4817703 | Other | lineage1.1.1.1 | None | ERR4819198 | Other | lineage2.2.1 | None | ERR4819766 | Other | lineage4.4.1.1 | None | ERR4819772 | Other | lineage1.1.3.1 | None | SRR1049676 | MDR-TB | lineage4.3.3;lineage4.8 | None | ERR4819948 | Other | lineage4.4.1.1 | None | ERR4819834 | Sensitive | lineage4.8 | gb | SRR11342649 | MDR-TB | lineage4.3.3 | None | SRR1140574 | MDR-TB | lineage4.3.3;lineage4.8 | None | ERR4815241 | Other | lineage3.1.2 | gb | ERR4815792 | Other | lineage4.1.2.1 | None | SRR7645977 | MDR-TB | lineage4.2.1 | None | ERR4816476 | Other | lineage3.1.2.1 | None | ERR4815534 | Other | lineage4.9 | None | ERR4817735 | Other | lineage4.8 | None | ERR4821232 | HR-TB | lineage4.8 | gb | ERR4819830 | Other | lineage2.2.1 | None | ERR4819525 | Other | lineage3 | None | SRR1140753 | RR-TB | lineage4.3.4.2.1 | None | SRR6046733 | Pre-XDR-TB | lineage2.2.1 | None | SRR5007167 | RR-TB | lineage4.1.1.3.1 | None | ERR978756 | Other | lineage4.8 | None | SRR15316595 | RR-TB | lineage4.4.2 | None | SRR6045957 | Other | lineage4.9 | None | DRR184982 | Other | lineage2.2.1 | None | SRR11342687 | RR-TB | lineage4.2.2.2 | None | ERR4821372 | Other | lineage4.1.2.1 | None | SAMEA3501015 | Other | lineage4.8 | None | ERR867526 | MDR-TB | lineage2.2.1 | None | ERR867538 | Other | lineage4.2.2.2 | None | ERR4815787 | Other | lineage2.2.1 | None | SRR6044983 | Other | lineage3.1.1 | None | ERR4820817 | Other | lineage4.1.2.1 | None | ERR10796559 | Other | lineage4.9 | None | ERR4818050 | Sensitive | lineage4.6.2.2 | None | ERR4820408 | Other | lineage4.1.2.1 | None | ERR4817853 | Other | lineage4.8.1 | None | SRR5818435 | Sensitive | lineage4.9 | None | SRR11342642 | MDR-TB | lineage4.1.1.1 | None | ERR4815898 | Other | lineage3 | None | ERR4816982 | Other | lineage4.9 | None | ERR4817452 | Other | lineage4.8 | None | SRR7645927 | Other | lineage4.8 | None | ERR4820335 | Other | lineage4.1.2.1 | None | ERR4820404 | Other | lineage4.3.2 | None | ERR4816531 | Other | lineage4.1.2 | None | ERR4817926 | HR-TB | lineage4.6.2.2 | gb | ERR978762 | Other | lineage4.8 | None | ERR4821865 | Other | lineage2.2.1 | gb | SRR5818647 | Other | lineage4.3.4.2.1 | None | ERR2851359 | Other | lineage4.9 | None | ERR978748 | Other | lineage4.8 | None | ERR4819287 | Other | lineage1.1.3.3 | None | SRR5818445 | Other | lineage4.9 | None | ERR4821775 | Other | lineage4 | None | ERR970449 | RR-TB | lineage4.1.1.3 | None | ERR10796563 | Other | lineage4.3.3 | None | ERR10796615 | Other | lineage4.3.3;lineage4.9 | None | ERR4816227 | Other | lineage3 | None | ERR4819784 | Other | lineage4.1.2.1 | None | ERR4814700 | Other | lineage4.3.3 | None | ERR4814671 | Other | lineage3 | gb | ERR4816089 | Other | lineage4.2.2.2 | gb | ERR4815572 | Other | lineage4.1.2.1 | None | ERR4819096 | Other | lineage4.4.1.1 | None | ERR2027290 | Other | lineage3.1.2.1;lineage4.9 | None | ERR978760 | RR-TB | lineage4.8 | None | SRR7070329 | Other | lineage3 | None | ERR9896153 | RR-TB | lineage4.4.1.1 | None | SRR16089407 | Other | lineage4.8 | None | ERR867523 | Pre-XDR-TB | lineage2.2.1 | None | ERR4822004 | Other | lineage1.1.1.1 | gb | ERR4820030 | Other | lineage4.9 | None | ERR4816334 | Other | lineage4.6.2.2 | None | ERR5987263 | MDR-TB | lineage2.2.1 | None | ERR2229541 | Other | lineage4.8 | None | SRR7755652 | Pre-XDR-TB | lineage2.2.1;lineage4.2.1 | None | SRR5818397 | Other | lineage4.9 | None | ERR2514430 | Other | lineage3.1.2;lineage4.1.1.3.1 | None | ERR10796583 | Other | lineage2.2.1 | None | ERR10796593 | Other | lineage4.3 | None | SRR11342698 | RR-TB | lineage4.4.1.1 | None | ERR3276170 | Other | lineage4.1.2.1 | nl | ERR978767 | RR-TB | lineage4.8 | None | ERR4829039 | RR-TB | lineage4.3.1 | None | ERR4818355 | Other | lineage3 | None | ERR4821051 | Other | lineage1.2.1.2.1 | None | ERR4814905 | Sensitive | lineage4.8 | gb | SRR18002974 | Other | lineage2.2.1 | None | ERR019855 | Other | lineage3 | None | SRR18913750 | Other | lineage2.2.1 | None | ERR9119733 | MDR-TB | lineage2.2.1 | None | SRR11342669 | Other | lineage4.8 | None | ERR10796564 | Other | lineage4.3.3 | None | ERR978726 | RR-TB | lineage4.8 | None | SRR7755655 | Other | lineage4.1.2.1 | None | ERR4819456 | Other | lineage4.8 | None | ERR4818393 | RR-TB | lineage3;lineage4 | None | ERR4816717 | RR-TB | lineage3.1.2.1 | None | ERR4821526 | Other | lineage4.3.2 | None | ERR4817895 | Other | lineage4.1.2.1 | None | ERR4814415 | Other | lineage3.1.1 | None | ERR4818509 | RR-TB | La1.2.BCG | gb | ERR10796626 | Other | lineage4.1.2.1 | None | ERR7801175 | HR-TB | lineage4.6.5 | None | ERR4817751 | Other | lineage1.1.3.3 | None | ERR4814986 | Other | lineage4.3.4.2 | None | ERR4819307 | Other | lineage4.3.2 | None | ERR4821172 | RR-TB | lineage4.9 | None | ERR4815551 | Other | lineage2.2.1 | None | SRR7645899 | Other | lineage2.2.1 | None | ERR4822190 | Other | lineage1.1.3.1 | gb | ERR4815920 | Other | lineage3 | None | ERR7801176 | RR-TB | lineage4.6.5 | None | ERR4821119 | Other | lineage4.4.1.1 | None | ERR4829208 | Other | lineage4.8 | None | SRR18909918 | Other | lineage2.2.1.1 | None | SRR6397640 | Other | lineage4.2.1.1 | None | SRR3618864 | Pre-XDR-TB | lineage2.2.1 | None | SRR7645973 | Other | lineage4.3.4.1 | None | ERR4815923 | Sensitive | lineage4.8 | None | ERR978752 | Other | lineage4.8 | None | ERR4820492 | Other | lineage2.2.1 | None | ERR4817526 | Other | lineage4.4.1.1 | gb | ERR10796581 | Other | lineage4.1.2 | None | ERR2027257 | Other | lineage4.1.2.1 | None | ERR4820959 | Other | lineage4.1.2.1 | None | ERR502523 | Other | lineage6.3.1 | None | ERR4818192 | Other | lineage4.1.2.1 | gb | SRR11972369 | Pre-XDR-TB | lineage2.2.1 | None | ERR4818214 | Sensitive | lineage4.1.2.1 | gb | ERR4819002 | HR-TB | lineage4.8 | None | SRR3601585 | Pre-XDR-TB | lineage2.2.1 | None | ERR4828879 | HR-TB | lineage3 | None | SRR7755645 | Pre-XDR-TB | lineage2.2.1 | None | ERR4821731 | Other | lineage3 | gb | ERR2228838 | Other | lineage4.8 | None | ERR4821962 | Other | lineage4.1.1.3 | gb | ERR867567 | RR-TB | lineage3 | None | SAMEA3501065 | RR-TB | lineage4.8 | None | SRR5818399 | Sensitive | lineage4.9 | None | ERR2514137 | Pre-XDR-TB | lineage2.2.1 | None | ERR270777 | HR-TB | lineage4.1.2 | None | ERR4817134 | HR-TB | lineage2.2.1 | None | SRR3675230 | Other | lineage3;lineage4 | None | SRR1062880 | MDR-TB | lineage4.6.1.2 | None | SRR11972417 | MDR-TB | lineage2.2.1 | None | ERR4814507 | Other | lineage2.2.1 | None | ERR4814518 | Sensitive | lineage3 | gb | ERR4814954 | Other | lineage3.1 | gb | ERR4815425 | Other | lineage4.5 | gb | ERR4816604 | Sensitive | lineage4.1.2 | None | SRR11342660 | MDR-TB | lineage2.2.1 | None | ERR867554 | Other | lineage4.3.4.1 | None | ERR4817464 | Sensitive | lineage3.1.1 | None | ERR4821704 | Other | lineage4.3.3 | None | ERR4817555 | Sensitive | lineage3 | None | ERR4817645 | Other | lineage4.8 | None | ERR4816758 | Other | lineage4.8 | gb | ERR4820107 | Other | lineage1.2.1.2.1 | None | SRR19304104 | Other | lineage4.8 | None | ERR4819706 | MDR-TB | lineage4.3.4.2 | None | ERR4819636 | Other | lineage3.1.2 | None | ERR978693 | Other | lineage4.8 | None | ERR4819192 | Other | lineage3 | None | ERR4820723 | Other | lineage4.4.1.1 | None | ERR4821796 | Other | lineage4.1.1.1 | None | ERR4819876 | Other | lineage4.3.4.2.1 | None | ERR4815193 | MDR-TB | lineage4.8 | None | SRR7645901 | MDR-TB | lineage2.2.1 | None | ERR4820653 | Other | lineage2.2.1.1 | None | ERR4798769 | Other | lineage1.1.3.3 | None | SAMN02380990 | MDR-TB | lineage4.6.1.2 | None | SRR10315567 | HR-TB | lineage2.2.1 | None | ERR4818570 | Other | lineage4.3.3 | None | ERR2512423 | Other | lineage4.1.1.3 | None | ERR911930 | Other | lineage4.8 | None | ERR4816198 | Sensitive | lineage4.1.3 | None | ERR502473 | RR-TB | lineage4.9 | None | ERR4821887 | Other | lineage4.1.2.1 | None | SRR9970981 | RR-TB | lineage4.3.2.1 | None | ERR867572 | Other | lineage4.9 | None | SAMEA3450033 | Other | lineage4.8 | None | ERR4821879 | Other | lineage4.6.1.1 | None | ERR4815816 | Other | lineage4.5 | gb | ERR4821245 | Other | lineage4.1.2.1 | None | ERR4816831 | Other | lineage4.1.2.1 | None | SRR5818586 | RR-TB | lineage4.2.2.2 | None | ERR10796617 | Other | lineage4.3.4.1 | None | SRR3675509 | Other | lineage4.9 | None | ERR4814714 | Other | lineage3 | None | SRR5818449 | MDR-TB | lineage4.9 | None | SRR5818462 | Other | lineage4.9 | None | ERR4821722 | Other | lineage2.2.1 | None | ERR4769436 | Other | La1.3 | None | ERR171142 | Other | lineage3.1.1;lineage4.9 | None | ERR9117788 | Other | lineage3 | None | ERR10796588 | Other | lineage4.3.3 | None | SRR5818429 | Sensitive | lineage4.9 | None | SRR5818448 | Other | lineage4.9 | None | SRR1062920 | MDR-TB | lineage4.3.3;lineage4.8 | None | ERR10796582 | Other | lineage4.3.4.1 | None | ERR10796580 | Other | lineage4 | None | SRR1180440 | Other | lineage4.9 | None | ERR4812495 | Other | lineage4.1.2.1 | pe | ERR4816457 | Other | lineage4.1.2.1 | gb | ERR4814362 | Other | lineage4.8 | None | ERR867524 | Pre-XDR-TB | lineage4.2.1 | None | ERR4821915 | Sensitive | lineage3;lineage4.9 | None | ERR4819017 | Other | lineage3 | None | SRR19303820 | RR-TB | lineage4.8 | None | SRR3619764 | Pre-XDR-TB | lineage2.2.1 | None | ERR4816462 | Other | lineage4.1.2.1 | None | ERR2515055 | Sensitive | lineage3 | None | ERR502481 | RR-TB | lineage4.9 | None | SRR21727760 | Other | lineage2.2.1 | None | ERR502474 | RR-TB | lineage4.9 | None | ERR4816403 | Other | lineage6.2.3 | None | ERR4817874 | Other | lineage3 | None | ERR978694_ERR978693 | Other | lineage4.8 | None | ERR4820720 | Other | lineage4.1.2.1 | None | ERR4816907 | Other | lineage1.1.1 | None | ERR4829816 | RR-TB | lineage4.4.1.1 | None | SRR6046839 | Other | lineage4.9 | None | ERR4820230 | Other | lineage4.1.2.1 | gb | ERR10796575 | Other | lineage4.3.4;lineage4.9 | None | ERR10796594 | Other | lineage4.9 | None | ERR10796640 | Other | lineage4.1.2.1 | None | ERR10796628 | Other | lineage4.3.3 | None | SRR6045071 | Other | lineage4.3.1.1 | None | ERR4818548 | Other | lineage4.3.3 | None | SRR11972425 | Pre-XDR-TB | lineage2.2.1 | None | ERR4815165 | Other | lineage4.1.2.1 | None | ERR4815225 | Other | lineage1.2.2.2 | None | ERR4814745 | Other | lineage4.6.5 | None | ERR4819872 | HR-TB | lineage4.4.1.1 | None | ERR4815427 | HR-TB | lineage3.1 | gb | SRR7069800 | Other | lineage3.1.2.1 | None | SAMEA3501073 | RR-TB | lineage4.8 | None | SRR3675552 | Other | lineage4.9 | None | ERR4822021 | Other | lineage4.8 | gb | ERR4820889 | Other | lineage3 | gb | ERR10796571 | Other | lineage4.9 | None | ERR10796589 | Other | lineage4.9 | None | ERR3806588 | Other | lineage6.1.3 | None | ERR10796633 | Other | lineage4.3.4.2 | None | SRR7070320 | Other | lineage4.8 | None | ERR4820057 | Sensitive | lineage4.4.1.1 | gb | ERR10796634 | Other | lineage4.7 | None | SRR5818432 | MDR-TB | lineage4.9 | None | ERR2513681 | Other | lineage1.1.2 | None | ERR4814763 | Other | lineage2.2.1 | None | ERR11465833 | Sensitive | lineage4.3.2.1 | None | ERR867575 | Other | lineage4.9 | None | SRR7070469 | Other | lineage4.3.1.1 | None | ERR867555 | Other | lineage3 | None | ERR4815101 | Other | lineage3 | gb | ERR4815278 | Other | lineage4.8 | None | ERR4815709 | Sensitive | lineage4.1.2.1 | None | ERR4815945 | Other | lineage3.1.2 | gb | ERR4819579 | HR-TB | lineage4.3.3 | None | ERR4820012 | Sensitive | lineage4.1.2.1 | None | ERR4820270 | MDR-TB | lineage4.8 | gb | ERR4820713 | HR-TB | lineage4.8 | None | ERR3275941 | RR-TB | lineage4.3 | nl | ERR4818874 | Other | lineage4.1.2.1 | gb | SRR10869071 | MDR-TB | lineage2.2.1 | None | ERR10796620 | Other | lineage4.1.1.1 | None | SRR6045267 | RR-TB | lineage4.8 | None | ERR4821310 | Other | lineage5 | None | SRR5818460 | Other | lineage4.9 | None | SRR6045603 | Other | lineage4.1.1.3 | None | ERR4821198 | Other | lineage3 | gb | ERR978761_ERR978762_ERR978760 | RR-TB | lineage4.8 | None | SRR7131121 | Other | lineage4.3.3 | None | SRR7755688 | Pre-XDR-TB | lineage4.2.1 | None | ERR4769508 | RR-TB | lineage4.9 | None | ERR4816692 | Other | lineage4.1.2.1 | None | ERR4815613 | Other | lineage3 | None | ERR4815901 | Other | lineage2.2.2 | None | ERR4819191 | Other | lineage4.6.2.2 | None | SRR11342691 | MDR-TB | lineage2.2.1 | None | ERR978750_ERR978752_ERR978751 | RR-TB | lineage4.8 | None | ERR2510831 | Other | lineage4.3.3 | None | SRR11342686 | MDR-TB | lineage4.8 | None | SRR11342651 | MDR-TB | lineage4.1.1.1 | None | ERR978755_ERR978756_ERR978754_ERR978757 | RR-TB | lineage4.8 | None | ERR2513298 | Sensitive | lineage4.8 | gb | ERR4814874 | Sensitive | lineage1.1.2 | None | SRR7131030 | Other | lineage4.1.2.1 | None | ERR4818538 | Sensitive | lineage3 | gb | ERR4818126 | Other | lineage1.2.2 | None | ERR4814356 | Other | lineage3.1.2 | None | ERR4815472 | Other | lineage4.9 | gb | ERR4819533 | Other | lineage1.1.2 | None | ERR4819567 | Other | lineage2.2.1 | None | SRR5818386 | Other | lineage4.9 | None | SRR7070293 | Other | lineage4.8 | None | SRR6046020 | Other | lineage3 | None | ERR10796624 | Other | lineage4.8 | None | ERR4816967 | Other | lineage5 | None | SRR13888750 | Other | La2 | None | SRR6982141 | Other | lineage4.3.3 | None | ERR4821769 | Other | lineage4.1.2.1 | None | ERR4821417 | Other | lineage1.1.3.1 | None | ERR4819242 | HR-TB | lineage4.6.2.2 | None | ERR2228890 | Other | lineage4.8;lineage4.9 | None | SRR7069153 | Other | lineage4.1.2.1 | None | ERR4816665 | HR-TB | lineage4.4.1.1 | gb | SRR3675582 | Other | lineage4.9 | None | ERR4816667 | Other | lineage2.2.2 | None | ERR4817993 | Other | lineage1.2.2.2 | None | ERR4816425 | Other | lineage2.2.2 | None | ERR502478 | RR-TB | lineage4.9 | None | SRR7236134 | Other | La1.8.1 | None | ERR867540 | MDR-TB | lineage2.2.1 | None | ERR4818583 | Other | lineage4.3.3 | None | ERR4820829 | Other | lineage4.8 | None | ERR10796596 | Other | lineage4.9 | None | ERR4817435 | Other | lineage1.1.3.1 | None | ERR4818918 | Other | lineage1.1.2 | gb | ERR4814681 | Other | lineage2.2.1 | None | ERR4821334 | Other | lineage4.1.3 | None | SRR5818464 | Other | lineage4.9 | None | ERR4816954 | Other | lineage4.1.2.1 | None | SRR6397815 | Other | lineage4.4.1.1 | None | ERR867541 | MDR-TB | lineage4.2.1 | None | SRR7069137 | Other | lineage4.8 | None | SRR6046376 | Other | lineage3 | None | ERR4817194 | Sensitive | lineage4.1.2.1 | None | ERR4815171 | HR-TB | lineage1.1.2 | None | SRR11342643 | MDR-TB | lineage4.1.1.1 | None | ERR10796558 | Sensitive | lineage4.3.4.1;lineage4.9 | None | ERR4829333 | Other | lineage4 | None | ERR4818064 | Other | lineage4.8 | None | ERR2229366 | Other | lineage4.8 | None |
---|