TB-Profiler result

Run: ERR4819217
Summary

Run ID: ERR4819217

Sample name:

Date: 01-04-2023 15:59:17

Number of reads: 664794

Percentage reads mapped: 43.24

Strain: lineage1.2.2.2

Drug-resistance: Other

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Drug resistance: This table reports drug-resistance associated mutations found in known resistance genes
Drug Resistance Supporting mutations
Lineage Table: The lineage is inferred by analysing lineage specific SNPs
Lineage Family Main Spoligotype RDs Frequency
lineage1 Indo-Oceanic EAI RD239 1.0
lineage1.2.2 Indo-Oceanic EAI1 RD239 1.0
lineage1.2.2.2 Indo-Oceanic NA RD239 1.0
Drug resistance-Associated Mutations: This table reports mutations found in candidate resistance genes which have been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction Drugs
rrs 1472733 n.888G>A non_coding_transcript_exon_variant 0.75 streptomycin
Non-Associated Mutations: This table reports mutations found in candidate resistance genes which have not been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction
gyrB 5075 c.-165C>T upstream_gene_variant 1.0
gyrB 6112 p.Met291Ile missense_variant 1.0
gyrA 7268 c.-34C>T upstream_gene_variant 1.0
gyrA 7362 p.Glu21Gln missense_variant 1.0
gyrA 7585 p.Ser95Thr missense_variant 1.0
gyrA 8452 p.Ala384Val missense_variant 1.0
gyrA 9143 c.1842T>C synonymous_variant 1.0
gyrA 9304 p.Gly668Asp missense_variant 1.0
fgd1 491742 c.960T>C synonymous_variant 1.0
rpoB 762233 c.2427G>C synonymous_variant 0.12
rpoB 762234 p.Pro810Ser missense_variant 0.12
rpoB 762239 c.2433G>A synonymous_variant 0.12
rpoB 762245 c.2439G>C synonymous_variant 0.12
rpoB 762254 c.2448T>C synonymous_variant 0.15
rpoB 762293 c.2487T>C synonymous_variant 0.18
rpoB 762858 p.Thr1018Ser missense_variant 0.12
rpoB 762879 p.Met1025Leu missense_variant 0.13
rpoC 762887 c.-483G>C upstream_gene_variant 0.13
rpoC 762902 c.-468C>T upstream_gene_variant 0.12
rpoC 762911 c.-459C>T upstream_gene_variant 0.13
rpoC 762917 c.-453C>T upstream_gene_variant 0.13
rpoC 762920 c.-450C>T upstream_gene_variant 0.13
rpoC 762929 c.-441G>C upstream_gene_variant 0.18
rpoC 762932 c.-438G>C upstream_gene_variant 0.15
rpoC 762938 c.-432G>C upstream_gene_variant 0.14
rpoC 762983 c.-387C>T upstream_gene_variant 0.17
rpoC 763031 c.-339T>C upstream_gene_variant 1.0
rpoB 763038 p.Thr1078Ala missense_variant 0.12
rpoC 763511 p.Cys48Gly missense_variant 0.25
rpoC 763517 p.Lys50Gln missense_variant 0.25
rpoC 763528 c.159G>C synonymous_variant 0.29
rpoC 763531 c.162G>C synonymous_variant 0.29
rpoC 763534 c.165T>C synonymous_variant 0.29
rpoC 763675 c.306C>G synonymous_variant 0.21
rpoC 763699 c.330G>T synonymous_variant 0.29
rpoC 763708 c.339G>C synonymous_variant 0.36
rpoC 763714 c.345G>C synonymous_variant 0.38
rpoC 763717 c.348T>C synonymous_variant 0.36
rpoC 763718 p.Leu117Val missense_variant 0.25
rpoC 763723 c.354G>C synonymous_variant 0.29
rpoC 763724 p.Asp119Asn missense_variant 0.29
rpoC 763729 c.360G>C synonymous_variant 0.31
rpoC 763732 c.363C>G synonymous_variant 0.29
rpoC 763735 c.366G>C synonymous_variant 0.29
rpoC 763744 c.375G>C synonymous_variant 0.2
rpoC 763751 p.Ile128Val missense_variant 0.21
rpoC 763772 p.Val135Met missense_variant 0.12
rpoC 763884 p.Ala172Val missense_variant 1.0
rpoC 763886 c.517C>A synonymous_variant 1.0
rpoC 764602 c.1233C>T synonymous_variant 0.15
rpoC 764605 c.1236G>T synonymous_variant 0.14
rpoC 764611 c.1242G>T synonymous_variant 0.13
rpoC 764632 c.1263T>A synonymous_variant 0.13
rpoC 764647 c.1278C>T synonymous_variant 0.18
rpoC 764650 c.1281G>T synonymous_variant 0.14
rpoC 764653 c.1284G>C synonymous_variant 0.13
rpoC 764662 c.1293G>C synonymous_variant 0.13
rpoC 764678 p.Lys437Gln missense_variant 0.13
rpoC 764692 c.1323C>T synonymous_variant 0.2
rpoC 764706 p.Leu446Gln missense_variant 0.17
rpoC 764713 c.1344G>C synonymous_variant 0.17
mmpL5 775639 p.Ile948Val missense_variant 1.0
mmpL5 776100 p.Thr794Ile missense_variant 1.0
rpsL 781395 c.-165T>C upstream_gene_variant 1.0
Rv1258c 1406133 p.Leu403Pro missense_variant 0.13
embR 1417019 p.Cys110Tyr missense_variant 1.0
rrs 1471659 n.-187C>T upstream_gene_variant 1.0
rrs 1472075 n.230A>G non_coding_transcript_exon_variant 1.0
rrs 1472078 n.233C>T non_coding_transcript_exon_variant 1.0
rrs 1472108 n.263C>T non_coding_transcript_exon_variant 0.92
rrs 1472122 n.277G>T non_coding_transcript_exon_variant 0.65
rrs 1472123 n.278A>T non_coding_transcript_exon_variant 0.68
rrs 1472124 n.279C>T non_coding_transcript_exon_variant 0.7
rrs 1472150 n.305T>A non_coding_transcript_exon_variant 0.93
rrs 1472155 n.310C>T non_coding_transcript_exon_variant 0.65
rrs 1472160 n.315C>T non_coding_transcript_exon_variant 0.72
rrs 1472172 n.327T>C non_coding_transcript_exon_variant 0.39
rrs 1472215 n.370A>G non_coding_transcript_exon_variant 0.12
rrs 1472225 n.380C>A non_coding_transcript_exon_variant 0.59
rrs 1472228 n.383G>C non_coding_transcript_exon_variant 0.1
rrs 1472234 n.389T>C non_coding_transcript_exon_variant 0.15
rrs 1472240 n.395G>C non_coding_transcript_exon_variant 0.12
rrs 1472242 n.397C>T non_coding_transcript_exon_variant 0.12
rrs 1472251 n.406G>A non_coding_transcript_exon_variant 1.0
rrs 1472253 n.408G>T non_coding_transcript_exon_variant 0.15
rrs 1472256 n.411T>A non_coding_transcript_exon_variant 0.29
rrs 1472258 n.413A>G non_coding_transcript_exon_variant 0.44
rrs 1472259 n.414C>A non_coding_transcript_exon_variant 0.79
rrs 1472285 n.440A>G non_coding_transcript_exon_variant 0.67
rrs 1472338 n.493A>G non_coding_transcript_exon_variant 1.0
rrs 1472344 n.499C>T non_coding_transcript_exon_variant 1.0
rrs 1472379 n.534T>C non_coding_transcript_exon_variant 0.67
rrs 1472400 n.555C>T non_coding_transcript_exon_variant 0.5
rrs 1472412 n.567A>G non_coding_transcript_exon_variant 0.5
rrs 1472416 n.571C>T non_coding_transcript_exon_variant 0.5
rrs 1472422 n.577T>C non_coding_transcript_exon_variant 0.5
rrs 1472462 n.617T>G non_coding_transcript_exon_variant 0.5
rrs 1472464 n.619A>G non_coding_transcript_exon_variant 0.5
rrs 1472473 n.628G>T non_coding_transcript_exon_variant 0.67
rrs 1472474 n.629C>G non_coding_transcript_exon_variant 0.67
rrs 1472476 n.631A>G non_coding_transcript_exon_variant 0.67
rrs 1472484 n.639A>T non_coding_transcript_exon_variant 0.67
rrs 1472489 n.644A>T non_coding_transcript_exon_variant 0.67
rrs 1472494 n.649A>G non_coding_transcript_exon_variant 1.0
rrs 1472496 n.651T>G non_coding_transcript_exon_variant 1.0
rrs 1472498 n.653C>A non_coding_transcript_exon_variant 1.0
rrs 1472507 n.662C>G non_coding_transcript_exon_variant 0.79
rrs 1472513 n.668T>C non_coding_transcript_exon_variant 0.21
rrs 1472517 n.672T>A non_coding_transcript_exon_variant 0.72
rrs 1472518 n.673G>T non_coding_transcript_exon_variant 0.72
rrs 1472530 n.685G>A non_coding_transcript_exon_variant 0.85
rrs 1472537 n.692C>T non_coding_transcript_exon_variant 0.84
rrs 1472549 n.704G>A non_coding_transcript_exon_variant 0.14
rrs 1472566 n.721G>A non_coding_transcript_exon_variant 0.72
rrs 1472571 n.726G>C non_coding_transcript_exon_variant 0.85
rrs 1472579 n.734G>C non_coding_transcript_exon_variant 0.61
rrs 1472579 n.734G>T non_coding_transcript_exon_variant 0.73
rrs 1472580 n.735C>T non_coding_transcript_exon_variant 0.28
rrs 1472581 n.736A>T non_coding_transcript_exon_variant 0.99
rrs 1472584 n.739A>T non_coding_transcript_exon_variant 0.15
rrs 1472598 n.753A>C non_coding_transcript_exon_variant 0.8
rrs 1472599 n.754G>T non_coding_transcript_exon_variant 0.79
rrs 1472616 n.771G>A non_coding_transcript_exon_variant 0.53
rrs 1472647 n.802C>T non_coding_transcript_exon_variant 0.37
rrs 1472655 n.810G>A non_coding_transcript_exon_variant 0.92
rrs 1472655 n.810G>T non_coding_transcript_exon_variant 0.86
rrs 1472658 n.813G>A non_coding_transcript_exon_variant 0.5
rrs 1472660 n.815T>C non_coding_transcript_exon_variant 0.36
rrs 1472661 n.816A>G non_coding_transcript_exon_variant 0.5
rrs 1472670 n.825G>T non_coding_transcript_exon_variant 0.54
rrs 1472673 n.828T>G non_coding_transcript_exon_variant 0.71
rrs 1472675 n.830T>C non_coding_transcript_exon_variant 0.86
rrs 1472677 n.832C>T non_coding_transcript_exon_variant 0.67
rrs 1472679 n.834T>C non_coding_transcript_exon_variant 0.22
rrs 1472681 n.837_838delTT non_coding_transcript_exon_variant 0.86
rrs 1472687 n.842_843insC non_coding_transcript_exon_variant 0.83
rrs 1472690 n.845C>A non_coding_transcript_exon_variant 0.88
rrs 1472697 n.852T>C non_coding_transcript_exon_variant 0.7
rrs 1472707 n.862A>T non_coding_transcript_exon_variant 0.12
rrs 1472713 n.868T>C non_coding_transcript_exon_variant 0.75
rrs 1472714 n.869A>G non_coding_transcript_exon_variant 0.23
rrs 1472716 n.871C>T non_coding_transcript_exon_variant 0.78
rrs 1472742 n.897C>T non_coding_transcript_exon_variant 0.74
rrs 1472744 n.899A>G non_coding_transcript_exon_variant 0.72
rrs 1472781 n.936C>T non_coding_transcript_exon_variant 0.74
rrs 1472790 n.945T>C non_coding_transcript_exon_variant 0.2
rrs 1472793 n.948A>T non_coding_transcript_exon_variant 0.79
rrs 1472803 n.958T>A non_coding_transcript_exon_variant 0.77
rrs 1472824 n.979T>A non_coding_transcript_exon_variant 0.95
rrs 1472825 n.980G>A non_coding_transcript_exon_variant 0.17
rrs 1472827 n.982G>T non_coding_transcript_exon_variant 0.44
rrs 1472828 n.983T>C non_coding_transcript_exon_variant 0.89
rrs 1472887 n.1042G>C non_coding_transcript_exon_variant 0.14
rrs 1472895 n.1050C>T non_coding_transcript_exon_variant 0.75
rrs 1472912 n.1067C>T non_coding_transcript_exon_variant 0.11
rrs 1472952 n.1107T>C non_coding_transcript_exon_variant 0.25
rrs 1472954 n.1109T>C non_coding_transcript_exon_variant 0.54
rrs 1472955 n.1110C>T non_coding_transcript_exon_variant 0.21
rrs 1472956 n.1111T>C non_coding_transcript_exon_variant 0.83
rrs 1472957 n.1112C>T non_coding_transcript_exon_variant 0.83
rrs 1472958 n.1113A>G non_coding_transcript_exon_variant 0.15
rrs 1472973 n.1128A>G non_coding_transcript_exon_variant 0.88
rrs 1472973 n.1128A>T non_coding_transcript_exon_variant 0.87
rrs 1472974 n.1129A>G non_coding_transcript_exon_variant 0.16
rrs 1472987 n.1142G>A non_coding_transcript_exon_variant 0.27
rrs 1472988 n.1143T>C non_coding_transcript_exon_variant 0.23
rrs 1472989 n.1144G>A non_coding_transcript_exon_variant 0.16
rrs 1472990 n.1145A>G non_coding_transcript_exon_variant 0.86
rrs 1472992 n.1147A>G non_coding_transcript_exon_variant 0.5
rrs 1473005 n.1160C>T non_coding_transcript_exon_variant 0.46
rrs 1473035 n.1190G>A non_coding_transcript_exon_variant 0.86
rrs 1473055 n.1210C>T non_coding_transcript_exon_variant 0.71
rrs 1473056 n.1211A>T non_coding_transcript_exon_variant 0.81
rrs 1473066 n.1221A>G non_coding_transcript_exon_variant 0.77
rrs 1473068 n.1223A>G non_coding_transcript_exon_variant 0.12
rrs 1473080 n.1235C>T non_coding_transcript_exon_variant 0.61
rrs 1473081 n.1236C>T non_coding_transcript_exon_variant 0.65
rrs 1473088 n.1243A>G non_coding_transcript_exon_variant 0.83
rrs 1473093 n.1248C>T non_coding_transcript_exon_variant 0.83
rrs 1473100 n.1255G>A non_coding_transcript_exon_variant 0.91
rrs 1473102 n.1257C>T non_coding_transcript_exon_variant 0.73
rrs 1473104 n.1259C>T non_coding_transcript_exon_variant 0.91
rrs 1473110 n.1265T>G non_coding_transcript_exon_variant 0.92
rrs 1473111 n.1266A>G non_coding_transcript_exon_variant 0.92
rrs 1473115 n.1270G>T non_coding_transcript_exon_variant 0.25
rrs 1473121 n.1276T>C non_coding_transcript_exon_variant 0.85
rrs 1473123 n.1278A>T non_coding_transcript_exon_variant 0.65
rrs 1473130 n.1285G>A non_coding_transcript_exon_variant 0.54
rrs 1473145 n.1300C>T non_coding_transcript_exon_variant 0.9
rrs 1473148 n.1303G>T non_coding_transcript_exon_variant 0.15
rrs 1473161 n.1316A>C non_coding_transcript_exon_variant 0.16
rrs 1473163 n.1318C>T non_coding_transcript_exon_variant 0.25
rrs 1473164 n.1319C>A non_coding_transcript_exon_variant 0.16
rrs 1473166 n.1321G>A non_coding_transcript_exon_variant 0.94
rrs 1473172 n.1327T>G non_coding_transcript_exon_variant 0.5
rrs 1473173 n.1328C>T non_coding_transcript_exon_variant 0.59
rrs 1473177 n.1332G>A non_coding_transcript_exon_variant 0.21
rrs 1473192 n.1347A>G non_coding_transcript_exon_variant 0.18
rrs 1473199 n.1356delA non_coding_transcript_exon_variant 0.14
rrs 1473205 n.1360T>C non_coding_transcript_exon_variant 0.19
rrs 1473221 n.1376C>T non_coding_transcript_exon_variant 0.61
rrs 1473252 n.1407T>C non_coding_transcript_exon_variant 1.0
rrs 1473259 n.1414C>T non_coding_transcript_exon_variant 1.0
rrs 1473276 n.1431A>C non_coding_transcript_exon_variant 1.0
rrs 1473277 n.1432G>A non_coding_transcript_exon_variant 0.88
rrs 1473289 n.1444_1445insTTTG non_coding_transcript_exon_variant 0.5
rrs 1473293 n.1449delA non_coding_transcript_exon_variant 0.5
rrs 1473300 n.1455C>T non_coding_transcript_exon_variant 0.57
rrs 1473301 n.1456T>G non_coding_transcript_exon_variant 0.67
rrs 1473316 n.1471C>T non_coding_transcript_exon_variant 0.67
rrl 1473384 n.-274A>G upstream_gene_variant 0.67
rrl 1474155 n.498G>A non_coding_transcript_exon_variant 1.0
rrl 1474156 n.499G>A non_coding_transcript_exon_variant 1.0
rrl 1474163 n.506C>T non_coding_transcript_exon_variant 1.0
rrl 1474164 n.507C>T non_coding_transcript_exon_variant 1.0
rrl 1474174 n.517A>G non_coding_transcript_exon_variant 0.3
rrl 1474181 n.524C>A non_coding_transcript_exon_variant 0.7
rrl 1474184 n.527C>T non_coding_transcript_exon_variant 1.0
rrl 1474186 n.529A>G non_coding_transcript_exon_variant 0.17
rrl 1474197 n.540C>T non_coding_transcript_exon_variant 0.77
rrl 1474199 n.542G>C non_coding_transcript_exon_variant 0.92
rrl 1474200 n.545delT non_coding_transcript_exon_variant 1.0
rrl 1474249 n.592G>T non_coding_transcript_exon_variant 0.92
rrl 1474266 n.609T>C non_coding_transcript_exon_variant 0.25
rrl 1474271 n.614A>G non_coding_transcript_exon_variant 0.5
rrl 1474272 n.615C>T non_coding_transcript_exon_variant 0.5
rrl 1474275 n.618T>G non_coding_transcript_exon_variant 0.75
rrl 1474488 n.831G>T non_coding_transcript_exon_variant 1.0
rrl 1474498 n.841G>T non_coding_transcript_exon_variant 1.0
rrl 1474505 n.848C>G non_coding_transcript_exon_variant 1.0
rrl 1474508 n.851C>T non_coding_transcript_exon_variant 1.0
rrl 1474516 n.859C>A non_coding_transcript_exon_variant 1.0
rrl 1474527 n.870T>C non_coding_transcript_exon_variant 1.0
rrl 1474537 n.880G>A non_coding_transcript_exon_variant 1.0
rrl 1474542 n.885A>G non_coding_transcript_exon_variant 1.0
rrl 1474626 n.969T>C non_coding_transcript_exon_variant 0.83
rrl 1474632 n.975G>T non_coding_transcript_exon_variant 1.0
rrl 1474634 n.977T>G non_coding_transcript_exon_variant 0.67
rrl 1474636 n.979A>C non_coding_transcript_exon_variant 1.0
rrl 1474637 n.980C>T non_coding_transcript_exon_variant 0.33
rrl 1474638 n.981C>G non_coding_transcript_exon_variant 0.83
rrl 1474639 n.982G>C non_coding_transcript_exon_variant 0.33
rrl 1474658 n.1001A>G non_coding_transcript_exon_variant 0.6
rrl 1474663 n.1006C>T non_coding_transcript_exon_variant 0.6
rrl 1474673 n.1016T>C non_coding_transcript_exon_variant 0.75
rrl 1474676 n.1019T>A non_coding_transcript_exon_variant 1.0
rrl 1474677 n.1020A>G non_coding_transcript_exon_variant 0.67
rrl 1474692 n.1035G>A non_coding_transcript_exon_variant 0.67
rrl 1474734 n.1077G>C non_coding_transcript_exon_variant 1.0
rrl 1474760 n.1103A>G non_coding_transcript_exon_variant 1.0
rrl 1474794 n.1137C>T non_coding_transcript_exon_variant 1.0
rrl 1474802 n.1145T>C non_coding_transcript_exon_variant 0.29
rrl 1474824 n.1167A>G non_coding_transcript_exon_variant 0.71
rrl 1474830 n.1173A>G non_coding_transcript_exon_variant 1.0
rrl 1474831 n.1174A>C non_coding_transcript_exon_variant 1.0
rrl 1474831 n.1174A>G non_coding_transcript_exon_variant 1.0
rrl 1474832 n.1175A>T non_coding_transcript_exon_variant 0.5
rrl 1474864 n.1207C>T non_coding_transcript_exon_variant 1.0
rrl 1475881 n.2224T>C non_coding_transcript_exon_variant 0.33
rrl 1475883 n.2226A>C non_coding_transcript_exon_variant 1.0
rrl 1475884 n.2227A>G non_coding_transcript_exon_variant 0.6
rrl 1475892 n.2235A>G non_coding_transcript_exon_variant 0.4
rrl 1475897 n.2240T>G non_coding_transcript_exon_variant 0.5
rrl 1475898 n.2241A>G non_coding_transcript_exon_variant 1.0
rrl 1475899 n.2242G>A non_coding_transcript_exon_variant 1.0
rrl 1475900 n.2243A>G non_coding_transcript_exon_variant 0.5
rrl 1475916 n.2259C>G non_coding_transcript_exon_variant 1.0
rrl 1475937 n.2280A>T non_coding_transcript_exon_variant 0.5
rrl 1475943 n.2286G>A non_coding_transcript_exon_variant 0.5
rrl 1475945 n.2288C>A non_coding_transcript_exon_variant 0.5
rrl 1476140 n.2483T>C non_coding_transcript_exon_variant 0.22
rrl 1476160 n.2503T>C non_coding_transcript_exon_variant 0.18
rrl 1476164 n.2507A>G non_coding_transcript_exon_variant 0.4
rrl 1476165 n.2508T>A non_coding_transcript_exon_variant 0.33
rrl 1476179 n.2522C>T non_coding_transcript_exon_variant 0.8
rrl 1476187 n.2530T>C non_coding_transcript_exon_variant 0.3
rrl 1476194 n.2537A>G non_coding_transcript_exon_variant 0.7
rrl 1476200 n.2543A>T non_coding_transcript_exon_variant 0.73
rrl 1476201 n.2544C>T non_coding_transcript_exon_variant 0.36
rrl 1476204 n.2547C>T non_coding_transcript_exon_variant 0.45
rrl 1476205 n.2548A>C non_coding_transcript_exon_variant 0.17
rrl 1476207 n.2550T>C non_coding_transcript_exon_variant 0.33
rrl 1476214 n.2557G>T non_coding_transcript_exon_variant 0.17
rrl 1476221 n.2564T>C non_coding_transcript_exon_variant 0.23
rrl 1476224 n.2567A>G non_coding_transcript_exon_variant 0.46
rrl 1476225 n.2568T>G non_coding_transcript_exon_variant 0.15
rrl 1476227 n.2570C>T non_coding_transcript_exon_variant 0.23
rrl 1476229 n.2572C>T non_coding_transcript_exon_variant 0.15
rrl 1476250 n.2593C>G non_coding_transcript_exon_variant 0.25
rrl 1476257 n.2600G>C non_coding_transcript_exon_variant 0.29
rrl 1476260 n.2603A>G non_coding_transcript_exon_variant 0.29
rrl 1476358 n.2701T>C non_coding_transcript_exon_variant 0.16
rrl 1476359 n.2702C>G non_coding_transcript_exon_variant 0.87
rrl 1476369 n.2712C>T non_coding_transcript_exon_variant 0.13
rrl 1476372 n.2715T>C non_coding_transcript_exon_variant 0.1
rrl 1476381 n.2724G>C non_coding_transcript_exon_variant 0.84
rrl 1476382 n.2725A>G non_coding_transcript_exon_variant 0.11
rrl 1476425 n.2768G>T non_coding_transcript_exon_variant 0.19
rrl 1476428 n.2771C>T non_coding_transcript_exon_variant 0.84
rrl 1476429 n.2772A>C non_coding_transcript_exon_variant 0.54
rrl 1476429 n.2772A>T non_coding_transcript_exon_variant 0.74
rrl 1476466 n.2809C>T non_coding_transcript_exon_variant 0.62
rrl 1476481 n.2824T>C non_coding_transcript_exon_variant 0.82
rrl 1476501 n.2844C>T non_coding_transcript_exon_variant 0.2
rrl 1476506 n.2849T>C non_coding_transcript_exon_variant 0.56
rrl 1476567 n.2910C>T non_coding_transcript_exon_variant 0.4
rrl 1476584 n.2927C>T non_coding_transcript_exon_variant 0.5
rrl 1476585 n.2928A>G non_coding_transcript_exon_variant 0.5
rrl 1476594 n.2937C>A non_coding_transcript_exon_variant 0.67
rrl 1476603 n.2946G>T non_coding_transcript_exon_variant 0.4
rrl 1476607 n.2950C>T non_coding_transcript_exon_variant 0.4
rrl 1476608 n.2951C>G non_coding_transcript_exon_variant 0.4
rrl 1476614 n.2957A>T non_coding_transcript_exon_variant 0.4
rrl 1476619 n.2962C>T non_coding_transcript_exon_variant 0.4
rrl 1476628 n.2971T>A non_coding_transcript_exon_variant 0.4
rrl 1476629 n.2972C>A non_coding_transcript_exon_variant 0.4
rrl 1476630 n.2973A>G non_coding_transcript_exon_variant 0.4
rpsA 1833692 p.Val51Phe missense_variant 0.11
rpsA 1833700 c.159C>G synonymous_variant 0.11
rpsA 1833721 c.180A>G synonymous_variant 0.12
rpsA 1833727 c.186G>C synonymous_variant 0.12
rpsA 1833730 c.189C>T synonymous_variant 0.13
rpsA 1833732 p.Pro64Leu missense_variant 0.13
rpsA 1833736 c.195C>T synonymous_variant 0.15
rpsA 1833743 c.202C>T synonymous_variant 0.25
rpsA 1833955 c.414G>C synonymous_variant 0.15
rpsA 1833979 c.438T>C synonymous_variant 0.14
rpsA 1833997 c.456G>C synonymous_variant 0.17
rpsA 1834012 c.471G>C synonymous_variant 0.2
rpsA 1834015 c.474G>C synonymous_variant 0.2
rpsA 1834195 c.654G>C synonymous_variant 0.22
rpsA 1834228 c.687C>T synonymous_variant 0.2
rpsA 1834234 c.693G>C synonymous_variant 0.4
rpsA 1834240 c.699T>C synonymous_variant 0.33
rpsA 1834246 c.705G>T synonymous_variant 0.31
rpsA 1834249 c.708T>C synonymous_variant 0.31
rpsA 1834258 c.717G>A synonymous_variant 0.14
rpsA 1834261 c.720A>G synonymous_variant 0.31
rpsA 1834264 c.723G>C synonymous_variant 0.31
rpsA 1834294 c.753G>C synonymous_variant 0.19
rpsA 1834298 p.Gln253Glu missense_variant 0.14
rpsA 1834306 c.765T>C synonymous_variant 0.14
rpsA 1834327 c.786G>T synonymous_variant 0.12
rpsA 1834423 c.882G>C synonymous_variant 0.25
rpsA 1834427 p.Ile296Val missense_variant 0.3
rpsA 1834435 c.894G>C synonymous_variant 0.27
rpsA 1834451 c.910_912delTTGinsCTC synonymous_variant 0.27
rpsA 1834456 c.915T>C synonymous_variant 0.27
rpsA 1834459 c.918G>C synonymous_variant 0.27
rpsA 1834465 c.924T>C synonymous_variant 0.27
rpsA 1834468 c.927A>G synonymous_variant 0.25
rpsA 1834474 c.933C>G synonymous_variant 0.17
rpsA 1834486 p.Glu315Asp missense_variant 0.25
rpsA 1834489 c.948T>C synonymous_variant 0.25
tlyA 1917972 c.33A>G synonymous_variant 1.0
katG 2154724 p.Arg463Leu missense_variant 1.0
PPE35 2167926 p.Leu896Ser missense_variant 1.0
PPE35 2168279 c.2334G>T synonymous_variant 0.17
PPE35 2168742 p.Gly624Asp missense_variant 1.0
Rv1979c 2222308 p.Asp286Gly missense_variant 1.0
Rv1979c 2222826 c.338dupT frameshift_variant 1.0
Rv1979c 2223293 c.-129A>G upstream_gene_variant 1.0
kasA 2518132 c.18C>T synonymous_variant 1.0
ahpC 2726051 c.-142G>A upstream_gene_variant 1.0
folC 2746829 p.Ala257Val missense_variant 0.12
ald 3086788 c.-32T>C upstream_gene_variant 1.0
Rv3083 3448714 p.Asp71His missense_variant 1.0
fprA 3473996 c.-11_-10insA upstream_gene_variant 1.0
fprA 3474597 c.591C>A synonymous_variant 1.0
fprA 3475159 p.Asn385Asp missense_variant 1.0
fprA 3475370 p.Leu455Arg missense_variant 1.0
clpC1 4039994 p.Glu237Asp missense_variant 0.33
clpC1 4040009 c.696C>G synonymous_variant 0.22
clpC1 4040015 c.690G>T synonymous_variant 0.22
clpC1 4040018 c.687G>C synonymous_variant 0.22
clpC1 4040021 c.684A>C synonymous_variant 0.22
clpC1 4040024 c.681A>G synonymous_variant 0.22
clpC1 4040036 c.669C>G synonymous_variant 0.25
clpC1 4040042 c.663C>T synonymous_variant 0.25
clpC1 4040066 c.639G>C synonymous_variant 0.22
clpC1 4040517 p.Val63Ala missense_variant 1.0
embC 4240162 c.300C>A synonymous_variant 1.0
embC 4240671 p.Thr270Ile missense_variant 1.0
embC 4241042 p.Asn394Asp missense_variant 1.0
embA 4242643 c.-590C>T upstream_gene_variant 1.0
embA 4245969 p.Pro913Ser missense_variant 1.0
embB 4247646 p.Glu378Ala missense_variant 1.0
ubiA 4269387 p.Glu149Asp missense_variant 1.0
aftB 4269606 c.-770T>C upstream_gene_variant 1.0
ethA 4326148 c.1326G>T synonymous_variant 1.0
ethA 4326439 p.Asn345Lys missense_variant 1.0
ethR 4327683 p.Ile45Met missense_variant 1.0
whiB6 4338203 p.Arg107Cys missense_variant 1.0
whiB6 4338595 c.-75delG upstream_gene_variant 1.0
whiB6 4338603 c.-82C>T upstream_gene_variant 1.0
gid 4407588 c.615A>G synonymous_variant 1.0
gid 4407873 c.330G>T synonymous_variant 1.0