TB-Profiler result

Run: ERR176580

Summary

Run ID: ERR176580

Sample name:

Date: 31-03-2023 15:06:01

Number of reads: 1783892

Percentage reads mapped: 60.9

Strain: lineage4.3.4.2.1

Drug-resistance: Sensitive


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Drug resistance: This table reports drug-resistance associated mutations found in known resistance genes
Drug Resistance Supporting mutations
Lineage Table: The lineage is inferred by analysing lineage specific SNPs
Lineage Family Main Spoligotype RDs Frequency
lineage4 Euro-American LAM;T;S;X;H None 1.0
lineage4.3 Euro-American (LAM) mainly-LAM None 0.99
lineage4.3.4 Euro-American (LAM) LAM RD174 1.0
lineage4.3.4.2 Euro-American (LAM) LAM1;LAM4;LAM11 RD174 1.0
lineage4.3.4.2.1 Euro-American (LAM) LAM11 RD174 1.0
Drug resistance-Associated Mutations: This table reports mutations found in candidate resistance genes which have been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction Drugs
Non-Associated Mutations: This table reports mutations found in candidate resistance genes which have not been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction
gyrB 6140 p.Val301Leu missense_variant 1.0
gyrA 7362 p.Glu21Gln missense_variant 1.0
gyrA 7585 p.Ser95Thr missense_variant 1.0
gyrA 9304 p.Gly668Asp missense_variant 1.0
rpoB 760991 c.1185G>C synonymous_variant 0.1
rpoB 761036 c.1230G>C synonymous_variant 0.12
rpoB 761037 c.1231T>C synonymous_variant 0.12
rpoB 761057 c.1251G>C synonymous_variant 0.11
rpoB 761060 c.1254C>G synonymous_variant 0.1
rpoB 761573 c.1767C>G synonymous_variant 0.1
rpoB 761600 c.1794T>G synonymous_variant 0.11
rpoB 761603 c.1797C>G synonymous_variant 0.11
rpoB 761606 c.1800C>G synonymous_variant 0.11
rpoB 761615 c.1809A>C synonymous_variant 0.1
rpoB 761912 c.2106T>C synonymous_variant 0.1
rpoB 762002 c.2196C>G synonymous_variant 0.13
rpoB 762003 p.Asn733Gln missense_variant 0.12
rpoB 762011 c.2205G>C synonymous_variant 0.13
rpoB 762014 c.2208C>G synonymous_variant 0.14
rpoB 762015 p.Glu737Gln missense_variant 0.14
rpoB 762018 p.Glu738Gln missense_variant 0.17
rpoB 762053 c.2247T>C synonymous_variant 0.15
rpoB 762057 p.Ile751Val missense_variant 0.15
rpoB 762062 c.2256T>C synonymous_variant 0.12
rpoC 763486 c.117T>C synonymous_variant 0.11
rpoC 763504 c.135C>G synonymous_variant 0.11
rpoC 763528 c.159G>T synonymous_variant 0.11
rpoC 763532 p.Thr55Pro missense_variant 0.11
rpoC 763537 c.168C>G synonymous_variant 0.11
rpoC 763546 c.177A>G synonymous_variant 0.13
rpoC 763594 c.225C>T synonymous_variant 0.15
rpoC 763622 p.Ala85Ser missense_variant 0.14
rpoC 763630 c.261G>C synonymous_variant 0.14
rpoC 763633 c.264T>C synonymous_variant 0.14
rpoC 764338 p.Glu323Asp missense_variant 0.12
rpoC 764344 c.975C>T synonymous_variant 0.12
rpoC 764387 c.1018T>C synonymous_variant 0.1
rpoC 764452 c.1083T>C synonymous_variant 0.12
rpoC 764458 c.1089G>C synonymous_variant 0.12
rpoC 764461 c.1092A>G synonymous_variant 0.12
rpoC 764497 c.1128A>G synonymous_variant 0.11
rpoC 764498 p.Ser377Ala missense_variant 0.11
rpoC 764503 c.1134G>C synonymous_variant 0.11
rpoC 764521 c.1152T>C synonymous_variant 0.12
rpoC 764536 c.1167G>T synonymous_variant 0.11
rpoC 764539 c.1170C>G synonymous_variant 0.11
rpoC 764548 c.1179G>C synonymous_variant 0.18
rpoC 764560 c.1191T>G synonymous_variant 0.2
rpoC 764566 c.1197C>G synonymous_variant 0.17
rpoC 764575 c.1206T>G synonymous_variant 0.17
rpoC 764581 c.1212T>C synonymous_variant 0.19
rpoC 764582 p.Leu405Met missense_variant 0.2
rpoC 764605 c.1236G>C synonymous_variant 0.19
rpoC 764626 c.1257C>T synonymous_variant 0.17
rpoC 764632 c.1263T>C synonymous_variant 0.17
rpoC 764644 c.1275G>C synonymous_variant 0.17
rpoC 764650 c.1281G>T synonymous_variant 0.12
rpoC 764653 c.1284G>C synonymous_variant 0.12
rpoC 764656 c.1287C>G synonymous_variant 0.12
rpoC 764662 c.1293G>C synonymous_variant 0.13
rpoC 764677 c.1308C>G synonymous_variant 0.12
rpoC 764706 p.Leu446Gln missense_variant 0.12
rpoC 764722 c.1353G>C synonymous_variant 0.15
rpoC 764746 c.1377G>C synonymous_variant 0.14
rpoC 764752 c.1383G>C synonymous_variant 0.15
rpoC 764764 c.1395T>C synonymous_variant 0.14
rpoC 764780 c.1411_1412delAGinsTC synonymous_variant 0.12
rpoC 764995 c.1626C>G synonymous_variant 1.0
rpoC 766978 c.3609C>T synonymous_variant 0.15
rpoC 767002 c.3633G>C synonymous_variant 0.17
rpoC 767008 c.3639G>C synonymous_variant 0.17
rpoC 767017 c.3648C>G synonymous_variant 0.16
rpoC 767026 c.3657G>C synonymous_variant 0.17
rpoC 767032 c.3663G>C synonymous_variant 0.15
rpoC 767041 c.3672G>C synonymous_variant 0.13
rpoC 767044 c.3675G>C synonymous_variant 0.13
mmpL5 775639 p.Ile948Val missense_variant 1.0
rpsL 781395 c.-165T>C upstream_gene_variant 1.0
fbiC 1302917 c.-14_-13insA upstream_gene_variant 1.0
rrs 1471659 n.-187C>T upstream_gene_variant 1.0
rrs 1471914 n.69A>G non_coding_transcript_exon_variant 0.23
rrs 1471922 n.78delT non_coding_transcript_exon_variant 0.24
rrs 1471925 n.80T>C non_coding_transcript_exon_variant 0.23
rrs 1471931 n.87delA non_coding_transcript_exon_variant 0.25
rrs 1471934 n.89A>G non_coding_transcript_exon_variant 0.24
rrs 1471943 n.98T>C non_coding_transcript_exon_variant 0.26
rrs 1471967 n.122G>A non_coding_transcript_exon_variant 0.2
rrs 1471970 n.125G>A non_coding_transcript_exon_variant 0.21
rrs 1471972 n.127T>C non_coding_transcript_exon_variant 0.2
rrs 1471980 n.135G>T non_coding_transcript_exon_variant 0.2
rrs 1471986 n.141C>T non_coding_transcript_exon_variant 0.16
rrs 1471994 n.149G>C non_coding_transcript_exon_variant 0.12
rrs 1472108 n.263C>T non_coding_transcript_exon_variant 0.36
rrs 1472148 n.303T>C non_coding_transcript_exon_variant 0.47
rrs 1472150 n.305T>A non_coding_transcript_exon_variant 0.48
rrs 1472172 n.327T>C non_coding_transcript_exon_variant 0.47
rrs 1472225 n.380C>G non_coding_transcript_exon_variant 0.29
rrs 1472251 n.406G>A non_coding_transcript_exon_variant 0.23
rrs 1472324 n.479G>C non_coding_transcript_exon_variant 0.12
rrs 1472325 n.480G>C non_coding_transcript_exon_variant 0.12
rrs 1472328 n.483G>C non_coding_transcript_exon_variant 0.13
rrs 1472338 n.493A>G non_coding_transcript_exon_variant 0.23
rrs 1472370 n.525T>G non_coding_transcript_exon_variant 0.19
rrs 1472379 n.534T>C non_coding_transcript_exon_variant 0.17
rrs 1472396 n.551A>T non_coding_transcript_exon_variant 0.14
rrs 1472400 n.555C>T non_coding_transcript_exon_variant 0.14
rrs 1472422 n.577T>C non_coding_transcript_exon_variant 0.11
rrs 1472425 n.580T>C non_coding_transcript_exon_variant 0.12
rrs 1472486 n.641A>G non_coding_transcript_exon_variant 0.14
rrs 1472494 n.649A>T non_coding_transcript_exon_variant 0.13
rrs 1472496 n.651T>G non_coding_transcript_exon_variant 0.15
rrs 1472498 n.653C>T non_coding_transcript_exon_variant 0.14
rrs 1472530 n.685G>A non_coding_transcript_exon_variant 0.33
rrs 1472581 n.736A>C non_coding_transcript_exon_variant 0.36
rrs 1472583 n.738T>A non_coding_transcript_exon_variant 0.32
rrs 1472584 n.739A>T non_coding_transcript_exon_variant 0.33
rrs 1472697 n.852T>C non_coding_transcript_exon_variant 0.1
rrs 1472713 n.868T>C non_coding_transcript_exon_variant 0.18
rrs 1472714 n.869A>G non_coding_transcript_exon_variant 0.18
rrs 1472790 n.945T>C non_coding_transcript_exon_variant 0.24
rrs 1473066 n.1221A>G non_coding_transcript_exon_variant 0.36
rrs 1473100 n.1255G>A non_coding_transcript_exon_variant 0.35
rrs 1473104 n.1259C>T non_coding_transcript_exon_variant 0.33
rrs 1473110 n.1265T>G non_coding_transcript_exon_variant 0.33
rrs 1473111 n.1266A>G non_coding_transcript_exon_variant 0.31
rrs 1473121 n.1276T>C non_coding_transcript_exon_variant 0.31
rrs 1473122 n.1277T>A non_coding_transcript_exon_variant 0.31
rrs 1473252 n.1407T>C non_coding_transcript_exon_variant 0.39
rrs 1473262 n.1417T>C non_coding_transcript_exon_variant 0.42
rrs 1473276 n.1431A>G non_coding_transcript_exon_variant 0.4
rrs 1473283 n.1438T>C non_coding_transcript_exon_variant 0.39
rrs 1473290 n.1445C>T non_coding_transcript_exon_variant 0.31
rrs 1473291 n.1446_1447insT non_coding_transcript_exon_variant 0.32
rrs 1473301 n.1456T>C non_coding_transcript_exon_variant 0.34
rrs 1473314 n.1469A>G non_coding_transcript_exon_variant 0.29
rrs 1473315 n.1470T>C non_coding_transcript_exon_variant 0.29
rrs 1473316 n.1471C>T non_coding_transcript_exon_variant 0.29
rrl 1474508 n.851C>T non_coding_transcript_exon_variant 0.16
rrl 1474516 n.859C>G non_coding_transcript_exon_variant 0.16
rrl 1474527 n.870T>C non_coding_transcript_exon_variant 0.15
rrl 1474528 n.871T>A non_coding_transcript_exon_variant 0.16
rrl 1474530 n.873G>C non_coding_transcript_exon_variant 0.16
rrl 1474537 n.880G>A non_coding_transcript_exon_variant 0.17
rrl 1474539 n.882C>G non_coding_transcript_exon_variant 0.17
rrl 1474541 n.884G>T non_coding_transcript_exon_variant 0.18
rrl 1474542 n.885A>G non_coding_transcript_exon_variant 0.18
rrl 1474551 n.894G>C non_coding_transcript_exon_variant 0.18
rrl 1474558 n.901G>T non_coding_transcript_exon_variant 0.19
rrl 1474632 n.975G>T non_coding_transcript_exon_variant 0.22
rrl 1474636 n.979A>T non_coding_transcript_exon_variant 0.22
rrl 1474637 n.980C>T non_coding_transcript_exon_variant 0.22
rrl 1474638 n.981C>G non_coding_transcript_exon_variant 0.22
rrl 1474639 n.982G>C non_coding_transcript_exon_variant 0.21
rrl 1474651 n.995delT non_coding_transcript_exon_variant 0.21
rrl 1474662 n.1005C>T non_coding_transcript_exon_variant 0.19
rrl 1474664 n.1007G>T non_coding_transcript_exon_variant 0.19
rrl 1474666 n.1009T>G non_coding_transcript_exon_variant 0.19
rrl 1474676 n.1019T>A non_coding_transcript_exon_variant 0.2
rrl 1474684 n.1027T>C non_coding_transcript_exon_variant 0.11
rrl 1474760 n.1103A>G non_coding_transcript_exon_variant 0.11
rrl 1474779 n.1122G>A non_coding_transcript_exon_variant 0.21
rrl 1474782 n.1125G>A non_coding_transcript_exon_variant 0.25
rrl 1474794 n.1137C>T non_coding_transcript_exon_variant 0.36
rrl 1474812 n.1155G>A non_coding_transcript_exon_variant 0.43
rrl 1474823 n.1166C>G non_coding_transcript_exon_variant 0.39
rrl 1474824 n.1167A>G non_coding_transcript_exon_variant 0.4
rrl 1474830 n.1173A>T non_coding_transcript_exon_variant 0.42
rrl 1474831 n.1174A>T non_coding_transcript_exon_variant 0.43
rrl 1474869 n.1212G>T non_coding_transcript_exon_variant 0.49
rrl 1474901 n.1244A>G non_coding_transcript_exon_variant 0.32
rrl 1474904 n.1247G>C non_coding_transcript_exon_variant 0.32
rrl 1474905 n.1248T>C non_coding_transcript_exon_variant 0.32
rrl 1474913 n.1256T>C non_coding_transcript_exon_variant 0.29
rrl 1474932 n.1275C>T non_coding_transcript_exon_variant 0.25
rrl 1475526 n.1869C>A non_coding_transcript_exon_variant 0.15
rrl 1475532 n.1875A>G non_coding_transcript_exon_variant 0.15
rrl 1475538 n.1881T>A non_coding_transcript_exon_variant 0.12
rrl 1475539 n.1882A>T non_coding_transcript_exon_variant 0.11
rrl 1475542 n.1885A>G non_coding_transcript_exon_variant 0.12
rrl 1475544 n.1887A>T non_coding_transcript_exon_variant 0.12
rrl 1475545 n.1888T>G non_coding_transcript_exon_variant 0.11
rrl 1475550 n.1893A>G non_coding_transcript_exon_variant 0.12
rrl 1475571 n.1914A>T non_coding_transcript_exon_variant 0.12
rrl 1475740 n.2083G>C non_coding_transcript_exon_variant 0.12
rrl 1475747 n.2090A>G non_coding_transcript_exon_variant 0.12
rrl 1475753 n.2096C>G non_coding_transcript_exon_variant 0.12
rrl 1475769 n.2112T>C non_coding_transcript_exon_variant 0.11
rrl 1475775 n.2118G>T non_coding_transcript_exon_variant 0.19
rrl 1475781 n.2124T>C non_coding_transcript_exon_variant 0.2
rrl 1475788 n.2131C>G non_coding_transcript_exon_variant 0.24
rrl 1475881 n.2224T>C non_coding_transcript_exon_variant 0.37
rrl 1475883 n.2226A>C non_coding_transcript_exon_variant 0.37
rrl 1475897 n.2240T>C non_coding_transcript_exon_variant 0.31
rrl 1475900 n.2243A>G non_coding_transcript_exon_variant 0.32
rrl 1475902 n.2245T>C non_coding_transcript_exon_variant 0.33
rrl 1475916 n.2259C>T non_coding_transcript_exon_variant 0.27
rrl 1475952 n.2295A>G non_coding_transcript_exon_variant 0.22
rrl 1476126 n.2469C>T non_coding_transcript_exon_variant 0.15
rrl 1476131 n.2474C>T non_coding_transcript_exon_variant 0.16
rrl 1476164 n.2507A>G non_coding_transcript_exon_variant 0.24
rrl 1476165 n.2508T>G non_coding_transcript_exon_variant 0.24
rrl 1476194 n.2537A>G non_coding_transcript_exon_variant 0.31
rrl 1476200 n.2543A>T non_coding_transcript_exon_variant 0.32
rrl 1476201 n.2544C>T non_coding_transcript_exon_variant 0.35
rrl 1476214 n.2557G>T non_coding_transcript_exon_variant 0.34
rrl 1476215 n.2558C>T non_coding_transcript_exon_variant 0.34
rrl 1476224 n.2567A>G non_coding_transcript_exon_variant 0.38
rrl 1476245 n.2588C>T non_coding_transcript_exon_variant 0.39
rrl 1476252 n.2595T>G non_coding_transcript_exon_variant 0.34
rrl 1476255 n.2598A>G non_coding_transcript_exon_variant 0.33
rrl 1476256 n.2599A>G non_coding_transcript_exon_variant 0.33
rrl 1476260 n.2603A>G non_coding_transcript_exon_variant 0.39
rrl 1476281 n.2624T>C non_coding_transcript_exon_variant 0.39
rrl 1476296 n.2639C>T non_coding_transcript_exon_variant 0.35
rrl 1476297 n.2640C>T non_coding_transcript_exon_variant 0.35
rrl 1476298 n.2641C>G non_coding_transcript_exon_variant 0.34
rrl 1476301 n.2644A>T non_coding_transcript_exon_variant 0.35
rrl 1476309 n.2652G>C non_coding_transcript_exon_variant 0.38
rrl 1476425 n.2768G>T non_coding_transcript_exon_variant 0.38
rrl 1476466 n.2809C>T non_coding_transcript_exon_variant 0.35
rrl 1476506 n.2849T>C non_coding_transcript_exon_variant 0.3
rrl 1476517 n.2860C>T non_coding_transcript_exon_variant 0.25
rrl 1476524 n.2867C>A non_coding_transcript_exon_variant 0.18
rrl 1476525 n.2868A>G non_coding_transcript_exon_variant 0.18
rrl 1476528 n.2871A>T non_coding_transcript_exon_variant 0.18
rrl 1476536 n.2879G>A non_coding_transcript_exon_variant 0.19
rrl 1476538 n.2881A>G non_coding_transcript_exon_variant 0.19
rrl 1476539 n.2882A>G non_coding_transcript_exon_variant 0.19
rrl 1476540 n.2883C>G non_coding_transcript_exon_variant 0.2
rrl 1476584 n.2927C>T non_coding_transcript_exon_variant 0.24
rrl 1476585 n.2928A>G non_coding_transcript_exon_variant 0.23
rrl 1476608 n.2951C>G non_coding_transcript_exon_variant 0.2
rrl 1476614 n.2957A>T non_coding_transcript_exon_variant 0.19
rrl 1476616 n.2959A>G non_coding_transcript_exon_variant 0.2
rrl 1476619 n.2962C>T non_coding_transcript_exon_variant 0.2
rrl 1476628 n.2971T>A non_coding_transcript_exon_variant 0.22
rrl 1476629 n.2972C>A non_coding_transcript_exon_variant 0.22
rrl 1476630 n.2973A>G non_coding_transcript_exon_variant 0.22
rpsA 1833646 c.105T>C synonymous_variant 0.1
rpsA 1833655 c.114C>T synonymous_variant 0.12
rpsA 1833668 p.Ile43Val missense_variant 0.12
rpsA 1833676 c.135A>G synonymous_variant 0.12
rpsA 1833679 c.138G>C synonymous_variant 0.12
rpsA 1833682 c.141C>T synonymous_variant 0.12
rpsA 1833694 c.153G>C synonymous_variant 0.12
rpsA 1833697 c.156C>G synonymous_variant 0.12
rpsA 1833721 c.180A>G synonymous_variant 0.12
rpsA 1834123 c.582C>T synonymous_variant 0.14
rpsA 1834140 p.Ser200Thr missense_variant 0.12
rpsA 1834225 c.684C>T synonymous_variant 0.18
rpsA 1834228 c.687C>T synonymous_variant 0.17
rpsA 1834231 c.690T>G synonymous_variant 0.23
rpsA 1834237 c.696C>T synonymous_variant 0.18
rpsA 1834240 c.699T>C synonymous_variant 0.18
rpsA 1834241 c.700C>T synonymous_variant 0.19
rpsA 1834249 c.708T>C synonymous_variant 0.2
rpsA 1834252 c.711C>T synonymous_variant 0.19
rpsA 1834261 c.720A>G synonymous_variant 0.19
rpsA 1834264 c.723G>C synonymous_variant 0.21
rpsA 1834282 c.741C>T synonymous_variant 0.15
rpsA 1834288 c.747C>G synonymous_variant 0.15
rpsA 1834378 c.837T>G synonymous_variant 0.15
rpsA 1834384 c.843A>G synonymous_variant 0.14
rpsA 1834387 c.846C>T synonymous_variant 0.15
rpsA 1834399 p.His286Gln missense_variant 0.12
rpsA 1834405 c.864C>T synonymous_variant 0.12
rpsA 1834411 c.870T>C synonymous_variant 0.13
rpsA 1834420 c.879C>T synonymous_variant 0.13
rpsA 1834421 p.Gly294Gln missense_variant 0.13
rpsA 1834444 c.903C>G synonymous_variant 0.17
rpsA 1834451 c.910T>C synonymous_variant 0.13
rpsA 1834456 c.915T>G synonymous_variant 0.12
tlyA 1917972 c.33A>G synonymous_variant 1.0
katG 2155590 c.522A>G synonymous_variant 0.15
katG 2155613 p.Phe167Leu missense_variant 0.19
katG 2155614 p.Val166Ile missense_variant 0.18
katG 2155617 p.Ile165Met missense_variant 0.18
katG 2155626 c.486G>C synonymous_variant 0.22
katG 2155632 c.480A>G synonymous_variant 0.21
katG 2155637 p.Leu159Ile missense_variant 0.23
katG 2155659 c.453C>G synonymous_variant 0.23
katG 2155668 c.444G>C synonymous_variant 0.19
PPE35 2169317 c.1296C>T synonymous_variant 0.21
Rv1979c 2223293 c.-129A>G upstream_gene_variant 1.0
folC 2747263 c.336C>A synonymous_variant 0.18
ribD 2987307 p.Ala157Pro missense_variant 0.23
thyA 3073868 p.Thr202Ala missense_variant 0.97
ald 3086788 c.-32T>C upstream_gene_variant 1.0
fprA 3473996 c.-11_-10insA upstream_gene_variant 1.0
Rv3236c 3612009 p.Ala370Thr missense_variant 1.0
alr 3840719 c.702A>G synonymous_variant 1.0
clpC1 4038287 c.2418C>T synonymous_variant 1.0
clpC1 4038857 c.1848C>A synonymous_variant 0.3
clpC1 4039022 c.1683A>G synonymous_variant 0.17
clpC1 4039034 c.1671C>G synonymous_variant 0.23
clpC1 4039064 c.1641C>T synonymous_variant 0.27
clpC1 4039073 c.1632C>G synonymous_variant 0.25
clpC1 4039085 c.1620A>G synonymous_variant 0.27
clpC1 4039090 c.1615C>T synonymous_variant 0.26
clpC1 4039094 c.1611C>G synonymous_variant 0.27
clpC1 4039103 c.1602T>G synonymous_variant 0.3
clpC1 4039106 c.1599G>C synonymous_variant 0.28
clpC1 4039112 c.1593C>G synonymous_variant 0.23
clpC1 4039118 c.1587C>G synonymous_variant 0.22
clpC1 4039121 c.1584T>G synonymous_variant 0.14
clpC1 4039133 c.1572C>G synonymous_variant 0.13
clpC1 4039169 p.Glu512Asp missense_variant 0.17
clpC1 4039183 c.1522T>C synonymous_variant 0.23
clpC1 4039190 p.Thr505Ser missense_variant 0.24
clpC1 4039199 p.Ala502Glu missense_variant 0.27
clpC1 4039208 c.1497C>G synonymous_variant 0.27
clpC1 4039215 p.Phe497Tyr missense_variant 0.3
clpC1 4039239 p.Gly489Ala missense_variant 0.31
clpC1 4039826 c.879C>G synonymous_variant 0.18
clpC1 4039831 c.874T>C synonymous_variant 0.2
clpC1 4039838 p.Leu289Ile missense_variant 0.24
clpC1 4039844 c.861C>T synonymous_variant 0.22
clpC1 4039850 c.855T>C synonymous_variant 0.25
clpC1 4039855 c.850C>T synonymous_variant 0.22
clpC1 4039875 p.Asn277Arg missense_variant 0.21
clpC1 4039889 c.816G>C synonymous_variant 0.23
clpC1 4039898 c.807C>G synonymous_variant 0.22
clpC1 4039901 c.804C>G synonymous_variant 0.19
clpC1 4039904 c.801A>G synonymous_variant 0.19
clpC1 4039913 c.792C>T synonymous_variant 0.13
clpC1 4040066 c.639G>C synonymous_variant 0.12
clpC1 4040081 c.624C>G synonymous_variant 0.12
clpC1 4040084 c.621C>G synonymous_variant 0.12
clpC1 4040087 c.618G>C synonymous_variant 0.11
clpC1 4040090 c.615T>C synonymous_variant 0.12
clpC1 4040093 c.612C>G synonymous_variant 0.12
clpC1 4040351 c.354C>T synonymous_variant 0.12
clpC1 4040354 c.351A>G synonymous_variant 0.12
clpC1 4040363 c.342A>G synonymous_variant 0.11
clpC1 4040380 c.325T>C synonymous_variant 0.11
clpC1 4040381 c.324T>C synonymous_variant 0.11
embC 4242425 p.Arg855Gly missense_variant 0.21
embA 4242643 c.-590C>T upstream_gene_variant 1.0
whiB6 4338595 c.-75delG upstream_gene_variant 1.0
gid 4408156 p.Leu16Arg missense_variant 1.0