EBG00000313339 - n.1248T>C


Drug resistance types
30 Sensitive 57 RR-TB 40 HR-TB 58 MDR-TB 26 Pre-XDR-TB 1 XDR-TB 141 Other
lineage Counts
lineage Count
18
lineage4.9 47
lineage4.1.2.1 18
lineage4.2.1 13
lineage2.2.1 46
lineage4.3.4.1 6
lineage4.3 2
lineage4 15
lineage4.8 36
lineage4.3.4 1
lineage4.1.1 2
lineage4.3.3 11
lineage4.3.4.2.1 8
lineage4.4.1.2 1
lineage4.3.2.1 4
La1.8.1 10
lineage6 2
lineage3.1.1 5
La1.3 2
lineage2.2.2 3
La1.2 2
lineage4.4.2 5
lineage3 16
lineage5.1.1 2
lineage4.3.2 1
lineage1.2.2.2 2
lineage4.6.5 1
lineage4.9.1 1
lineage4.1.1.2 1
lineage3.1.3 1
lineage4.1.1.3 8
lineage4.7 2
lineage2.2.1.1 2
lineage4.1.4 1
lineage1.2.1.2 1
lineage4.6.1.2 5
lineage4.4.1.1 8
lineage4.8;lineage4.3.3 4
lineage4.2.2.1 1
lineage4.4 1
La1.4 1
La1.7.1 3
lineage2.2 2
lineage4.6.2.2 6
lineage4.6.1.1 2
lineage4.5 2
lineage3.1.2.1 1
lineage4.2.1.1 2
lineage1 1
lineage1.1.1 1
lineage6.3.1 1
lineage4.1.1.3.1 2
lineage4.1.2 3
lineage4.3.1.1 1
lineage1.1.3.1 1
lineage4.2.2.2 2
lineage3.1.2 1
lineage4.6 2
lineage4.1 1
lineage1.1.2 2
lineage4.2.2 1
spoligotype Counts
spoligotype Count
None 353
Geographic prevalence
Country level data for this variant is available for 5 isolates.
Statisctical support
Not enough data to calculate support.
Samples
ID Drug resistance Lineage Country iso2
ERR1063862 HR-TB None
ERR10796559 Other lineage4.9 None
ERR10796555 Other lineage4.1.2.1 None
ERR1063858 HR-TB None
ERR1063859 HR-TB None
ERR10762248 MDR-TB lineage4.2.1 None
ERR10762275 MDR-TB lineage4.2.1 None
ERR10762495 MDR-TB lineage2.2.1 None
ERR10796572 Other lineage4.3.4.1 None
ERR10796562 Other lineage4.3.4.1 None
ERR10796568 Other lineage4.9 None
ERR10796578 Other lineage2.2.1 None
ERR10796571 Other lineage4.9 None
ERR10796582 HR-TB lineage4.3 None
ERR10796594 Other lineage4.9 None
ERR10796595 Other lineage4.9 None
ERR10796615 Other lineage4 None
ERR10796599 Other lineage4 None
ERR10796617 Other lineage4.3.4.1 None
ERR108125 Pre-XDR-TB lineage4.9 None
ERR10796618 Other lineage4.3.4.1 None
ERR10796624 Other lineage4.8 None
ERR10796627 Other lineage4 None
ERR10796630 HR-TB None
ERR10796631 Other lineage4.3.4 None
ERR10796623 Other lineage4.1.1 None
ERR10796628 Other lineage4.3.3 None
ERR11465490 Sensitive lineage4.1.2.1 None
ERR11465627 Sensitive lineage4.3.4.2.1 None
ERR126597 MDR-TB lineage4.4.1.2 None
ERR3439265 Other lineage4.9 None
ERR11465829 Sensitive lineage4.9 None
ERR3283006 RR-TB lineage4.9 None
ERR3283032 HR-TB None
ERR11465626 Sensitive lineage4.3.4.2.1 None
ERR11465833 Sensitive lineage4.3.2.1 None
ERR3283008 Other lineage4.9 None
ERR3283033 Sensitive lineage4.9 None
ERR3283043 Other lineage4.9 None
ERR3283046 MDR-TB lineage4.9 None
ERR3283051 Other lineage4.9 None
ERR3439489 RR-TB La1.8.1 None
ERR3468488 RR-TB La1.8.1 None
ERR3445503 HR-TB None
ERR3797065 MDR-TB lineage4 None
ERR3797062 RR-TB lineage4.9 None
ERR3468613 RR-TB La1.8.1 None
ERR4586795 Other La1.8.1 None
ERR3806588 Other lineage6 None
ERR4025018 Other lineage4.1.2.1 None
ERR4596904 MDR-TB lineage3.1.1 None
ERR4769554 RR-TB lineage4.9 None
ERR4596944 MDR-TB lineage3.1.1 None
ERR4769423 Other La1.3 None
ERR4769436 Other La1.3 None
ERR4809333 Pre-XDR-TB lineage2.2.2 None
ERR4772218 Other La1.2 None
ERR4808964 RR-TB lineage2.2.1 None
ERR4811101 Other lineage4.4.2 None
ERR4811708 HR-TB lineage4 None
ERR5917985 MDR-TB lineage2.2.1 None
ERR5866530 MDR-TB lineage2.2.1 None
ERR5979454 Pre-XDR-TB lineage3 None
ERR5979407 Other lineage3 None
ERR6197034 Other lineage4.9 None
ERR5987263 MDR-TB lineage2.2.1 None
ERR751345 Other lineage5.1.1 None
ERR6866241 Other lineage4.3.2 None
ERR736820 MDR-TB lineage1.2.2.2 None
ERR6865587 Other lineage4.1.2.1 None
ERR7801175 RR-TB lineage4.6.5 None
ERR037504 Other lineage4.9.1 None
ERR8975044 Other lineage4.1.1.2 None
ERR1034765 HR-TB lineage4.3.3 None
ERR9117826 Other lineage3.1.3 None
ERR212114 Other lineage4.3.4.2.1 None
ERR9117681 Other lineage4.3.3 None
ERR9786164 RR-TB lineage4.1.1.3 None
ERR9119733 MDR-TB lineage2.2.1 None
ERR970449 RR-TB lineage4.1.1.3 None
ERR987707 MDR-TB lineage4.7 None
ERR9787033 Sensitive lineage6 None
ERR983238 MDR-TB lineage2.2.1.1 None
ERR9901813 RR-TB lineage4.1.4 None
ERR9992784 Pre-XDR-TB lineage2.2.2 None
SRR10315567 Other lineage2.2.1 None
ERR9992879 XDR-TB lineage4.3.3 None
SRR023450 RR-TB lineage2.2.1 None
SRR023487 RR-TB lineage2.2.1 None
SRR10214505 Sensitive lineage1.2.1.2 None
SRR10315558 Sensitive lineage2.2.1 None
SRR1049582 MDR-TB lineage4.6.1.2 None
SRR10315584 Pre-XDR-TB lineage4.4.1.1 None
SRR1049581 MDR-TB lineage4.6.1.2 None
SRR1140574 MDR-TB lineage4.8;lineage4.3.3 None
SRR1049675 HR-TB lineage2.2.1 None
SRR1049676 MDR-TB lineage4.8;lineage4.3.3 None
SRR11342690 Sensitive lineage4.1.2.1 None
SRR11349147 RR-TB lineage4.3.2.1 None
SRR1049674 HR-TB lineage2.2.1 None
SRR1049677 MDR-TB lineage4.8;lineage4.3.3 None
SRR1062880 MDR-TB lineage4.6.1.2 None
SRR1062919 HR-TB lineage2.2.1 None
SRR1062920 MDR-TB lineage4.8;lineage4.3.3 None
SRR11342634 MDR-TB lineage4.8 None
SRR1173515 HR-TB lineage4.9 None
SRR1140724 HR-TB lineage2.2.1 None
SRR1172065 Pre-XDR-TB lineage3 None
SRR1173450 RR-TB lineage4.9 None
SRR1140712 MDR-TB lineage4.6.1.2 None
SRR1173139 Sensitive lineage4.9 None
SRR1173185 HR-TB lineage4.9 None
SRR1173281 RR-TB lineage3 None
SRR1173310 MDR-TB None
SRR1173385 Sensitive lineage4.9 None
SRR1173421 RR-TB lineage4.9 None
SRR1175474 HR-TB lineage4.9 None
SRR1173719 HR-TB lineage3 None
SRR1173687 Pre-XDR-TB lineage2.2.1 None
SRR1173740 Other None
SRR1173833 Other lineage4.9 None
SRR1175473 Other lineage4.9 None
SRR1175491 MDR-TB lineage4 None
SRR1175472 MDR-TB lineage4 None
SRR1180179 Pre-XDR-TB lineage3 None
SRR1196545 HR-TB lineage4.9 None
SRR1180440 Other lineage4.9 None
SRR1184308 Sensitive lineage4.9 None
SRR1180446 Other lineage4.9 None
SRR1184329 MDR-TB lineage4.9 None
SRR1196478 MDR-TB lineage4.9 None
SRR12634609 MDR-TB lineage3.1.1 None
SRR11972425 Pre-XDR-TB lineage2.2.1 None
SRR14334195 Pre-XDR-TB lineage2.2.1 None
SRR13423546 Other lineage4.4.2 None
SRR13423641 MDR-TB lineage2.2.1 None
SRR14782539 MDR-TB lineage4.2.1 None
SRR14334194 Pre-XDR-TB lineage2.2.1 None
SRR16156188 HR-TB lineage4.9 None
SRR16149133 MDR-TB lineage4.2.2.1 None
SRR14801325 Pre-XDR-TB lineage4.2.1 None
SRR15316595 RR-TB lineage4.4.2 None
SRR15508556 Other lineage4.3.4.1 None
SRR16157123 Other lineage4.9 None
SRR16156697 MDR-TB lineage2.2.1 None
SRR16156804 RR-TB lineage4.9 None
SRR16156832 RR-TB None
SRR16627752 RR-TB lineage4.4 None
SRR16278274 Other La1.4 None
SRR21469200 Other La1.7.1 None
SRR1792022 Other La1.8.1 None
SRR18002949 Sensitive lineage2.2.1 None
SRR18909918 Other lineage2.2.1.1 None
SRR20969542 Other lineage4.4.2 None
SRR21469201 Other La1.7.1 None
SRR17567917 RR-TB lineage4.4.1.1 None
SRR18003033 Other lineage2.2.1 None
SRR2100067 Other lineage4.3.3 None
SRR21714038 Sensitive lineage4.3.3 None
SRR22424765 MDR-TB lineage4 None
SRR22175249 Pre-XDR-TB lineage2.2.1 None
SRR21722120 Sensitive lineage4.1.2.1 None
SRR3601585 Pre-XDR-TB lineage2.2 None
ERR176778 HR-TB None
ERR176779 HR-TB None
ERR4815301 Other lineage4.4.2 None
ERR1815538 Other La1.7.1 None
ERR2229811 Other lineage4.8 dk
SRR22424851 MDR-TB lineage4.3.3 None
SAMEA3501065 RR-TB lineage4.8 None
ERR4815121 HR-TB lineage4.6.2.2 None
SRR3619841 Pre-XDR-TB lineage2.2.1 None
ERR176651 HR-TB None
SRR3619764 Pre-XDR-TB lineage2.2 None
ERR181824 HR-TB lineage4 None
ERR4815517 Other lineage1.2.2.2 None
ERR176580 Sensitive lineage4.3.4.2.1 None
SRR3618864 Pre-XDR-TB lineage2.2.1 None
ERR4815709 Sensitive lineage4.1.2.1 None
ERR1750889 Other lineage4.4.1.1 None
ERR4814763 Other lineage2.2.1 None
ERR4815017 Sensitive lineage4.6.1.1 None
ERR181887 HR-TB None
ERR2229541 Other lineage4.8 None
ERR4815079 RR-TB lineage3 None
SAMEA3501015 Other lineage4.8 None
ERR2229540 Other lineage4.8 None
ERR2228965 Other lineage4.8 None
ERR4815909 Other lineage4.8 None
ERR2027304 Sensitive lineage4.1.2.1 None
ERR2027297 RR-TB lineage4.8 None
ERR2027285 MDR-TB lineage4.6.2.2 None
ERR4816548 MDR-TB lineage4.5 None
ERR4816180 Sensitive lineage3.1.2.1 None
ERR4817069 RR-TB None
ERR212125 HR-TB lineage4 None
ERR2229204 Other lineage4.8 None
ERR2229147 Other lineage4.8 None
ERR2229198 MDR-TB lineage4.8 None
ERR4816696 Other lineage3 None
ERR4816670 Other lineage4.3.4.2.1 None
ERR2229633 Sensitive lineage4.8 None
ERR2229366 Other lineage4.8 None
ERR4816702 RR-TB lineage4.6.2.2 None
ERR2229435 HR-TB lineage4.8 None
ERR4816755 Other lineage4.1.1.3 None
ERR4817204 RR-TB lineage4.9 None
ERR2228810 RR-TB lineage4 None
ERR2229436 Other lineage4.8 None
ERR2228838 RR-TB lineage4.8 None
ERR2228815 RR-TB lineage4.8 None
ERR4816866 Other lineage2.2.1 None
ERR4815811 HR-TB lineage4.2.1.1 None
ERR2228890 Other lineage4 None
ERR2229505 Other lineage4.8 None
SAMN02380990 MDR-TB lineage4.6.1.2 None
SRR4033549 HR-TB lineage2.2.2 None
ERR2228900 RR-TB lineage4.8 None
ERR2228899 RR-TB lineage4.8 None
ERR4818646 Sensitive lineage4.1.2.1 None
ERR2228910 Other lineage4.8 None
ERR4818988 Other lineage1 None
ERR3275996 HR-TB lineage4.3.4.1 nl
ERR4818655 Other lineage4.3.3 None
ERR4817703 Other lineage1.1.1 None
ERR4817958 Other lineage4.2.1 None
ERR4817895 Other lineage4.1.2.1 None
ERR4818726 Other lineage4.1.2.1 None
ERR4817915 RR-TB lineage4.9 None
ERR4818797 Other lineage4.5 None
ERR2513405 Other lineage2.2.1 None
ERR3275941 RR-TB lineage4.3 nl
ERR4818128 RR-TB lineage4.1.2.1 None
SAMEA3501063 RR-TB lineage4.8 None
ERR4818440 Other lineage6.3.1 None
ERR4818370 Other lineage4.1.1 None
ERR4819096 Other lineage4.4.1.1 None
SRR5007155 HR-TB lineage4.1.2.1 None
SRR5007161 RR-TB lineage4.1.1.3.1 None
SRR5341365 Pre-XDR-TB lineage3 None
SAMEA3501067 RR-TB lineage4.8 None
ERR4819423 Other lineage4.6.2.2 None
ERR4819242 HR-TB lineage4.6.2.2 None
ERR4819641 HR-TB lineage4.6.2.2 None
SRR2100877 HR-TB lineage4.1.2 None
ERR4820397 Other lineage4.9 None
ERR4819622 Other lineage4.1.2.1 None
ERR2514515 Other lineage4.2.1 None
ERR4820075 Other lineage4.1.2.1 None
ERR1023509 Other None
SAMEA3501070 RR-TB lineage4.8 None
ERR4820484 Other lineage4.8 None
ERR4819910 Other lineage4.9 None
ERR4820829 Other lineage4.8 None
ERR2515032 Other lineage3 None
ERR1198990 Other lineage4.6.1.1 ug
SRR6045422 Other lineage4.3.1.1 None
SAMEA3501052 RR-TB lineage4.8 None
ERR4821057 HR-TB lineage4 None
ERR4821054 Other lineage3 None
ERR4821550 Other lineage2.2.1 None
ERR4821119 Other lineage4.4.1.1 None
SRR6045503 HR-TB None
SAMEA3501046 RR-TB lineage4.8 None
ERR270777 HR-TB lineage4.1.2 None
ERR4821417 Other lineage1.1.3.1 None
SRR5818586 RR-TB lineage4.2.2.2 None
SRR6045655 Other lineage4.1.1.3.1 None
SRR6045603 RR-TB lineage4.1.1.3 None
SAMN02628522 Pre-XDR-TB lineage3 ir
SRR6045843 Other lineage4.2.2.2 None
SRR6045002 MDR-TB lineage4.9 None
SRR6045849 Other lineage4.4.1.1 None
SRR6044952 RR-TB lineage4.9 None
ERR4830856 MDR-TB lineage4.4.1.1 None
SRR6045138 Other lineage3.1.1 None
SRR6046208 Other lineage4 None
SRR6046273 Other lineage3.1.2 None
SRR6046376 Other lineage3 None
ERR4830549 MDR-TB lineage4.1.1.3 None
ERR4829208 RR-TB lineage4.8 None
SRR6045159 Other lineage3.1.1 None
ERR4829337 Other lineage4.8 None
ERR4828805 Other lineage4.6 None
ERR4830892 Pre-XDR-TB lineage2.2.1 None
ERR4829816 RR-TB lineage4.4.1.1 None
SRR6896545 Other lineage4.9 None
SRR6046839 Other lineage4.9 None
ERR502470 RR-TB lineage4.9 None
SRR6397642 RR-TB None
ERR2886463 Sensitive lineage2.2.1 None
ERR4872322 Pre-XDR-TB lineage2.2.1 None
SRR6982141 RR-TB lineage4.3.3 None
SRR6785281 Other lineage4.2.1.1 None
SRR6789624 MDR-TB lineage4.1 None
ERR502517 MDR-TB lineage5.1.1 None
SRR6982239 HR-TB lineage4.1.1.3 None
SRR6982246 Sensitive lineage4 None
ERR11466014 Sensitive lineage4.3.4.2.1 None
ERR5087596 Other La1.8.1 None
ERR5087846 Other La1.8.1 None
ERR5087486 Other La1.8.1 None
ERR5311077 RR-TB La1.8.1 None
SRR7131122 Other lineage2.2.1 None
SRR9970980 Other lineage4.1.2 None
ERR11465830 Sensitive lineage4.9 None
SRR7131168 Other lineage4.1.2.1 None
SRR7131296 Other lineage4.3.3 None
SRR9971333 MDR-TB lineage4.1.1.3 None
SRR9971334 MDR-TB lineage4.3.2.1 None
SRR7585400 MDR-TB lineage3 None
SRR8600046 Other La1.8.1 None
SRR7645899 RR-TB lineage2.2.1 None
SRR7585435 Other lineage4.9 None
SRR9970981 RR-TB lineage4.3.2.1 None
SRR7645901 MDR-TB lineage2.2.1 None
SRR7645924 Pre-XDR-TB lineage4.2.1 None
SRR7645906 Other lineage2.2.1 None
SRR7645927 Other lineage4.8 None
SRR7645928 RR-TB lineage4.7 None
SRR9971046 MDR-TB lineage4.8 None
SRR7645972 MDR-TB lineage4.2.1 None
SRR7645977 MDR-TB lineage4.2.1 None
SRR7645971 Other lineage2.2.1 None
SRR7646018 MDR-TB lineage4.2.1 None
SRR9971065 RR-TB lineage2.2.1 None
SRR7765062 Pre-XDR-TB lineage4.1.2.1 None
SRR8649119 Other lineage4.6 None
SRR9971080 RR-TB lineage2.2.1 None
SRR9971112 Other lineage2.2.1 None
SRR7755655 Other lineage4.1.2.1 None
SRR9971113 Other lineage2.2.1 None
SRR7755688 Pre-XDR-TB lineage4.2.1 None
SRR9971114 Other lineage2.2.1 None
SRR7755643 Pre-XDR-TB lineage4.2.1 None
SRR7755645 Pre-XDR-TB lineage2.2.1 None
SRR7755649 MDR-TB lineage4.2.1 None
SRR7755657 Other lineage4.8 None
SRR9971122 MDR-TB lineage4.8 None
ERR323044 HR-TB lineage4.3.4.2.1 None
ERR323045 HR-TB None
SRR9217358 Sensitive lineage1.1.2 None
DRR184982 RR-TB lineage2.2.1 None
SRR7851312 Other La1.2 None
SRR9217359 MDR-TB lineage1.1.2 None
DRR188816 Sensitive lineage4.2.2 None
ERR036207 Other lineage4.9 None
ERR019855 Other lineage3 None
ERR017781 Other lineage3 None
ERR11465192 Sensitive lineage4.3.4.2.1 None
ERR1034647 MDR-TB lineage4.1.1.3 None
ERR1023502 MDR-TB lineage2.2.1 None
ERR038289 Other lineage4.3.3 None