lineage | Count |
---|---|
lineage4 | 15 |
lineage4.8 | 40 |
lineage2.2.1 | 49 |
lineage4.6.1.2 | 5 |
lineage4.5 | 3 |
lineage4.2.1.1 | 3 |
lineage2.2.2 | 4 |
lineage4.3.3 | 12 |
lineage4.1.2.1 | 22 |
lineage1.1.1 | 1 |
lineage1 | 1 |
lineage3.1.2.2 | 1 |
lineage4.9 | 45 |
lineage4.2.1 | 13 |
lineage4.1.1 | 2 |
lineage4.1.1.3.1 | 2 |
lineage6.3.1 | 1 |
lineage4.4.1.1 | 8 |
lineage3 | 17 |
lineage4.6.2.2 | 9 |
lineage4.3.4.2 | 1 |
lineage4.8.2 | 1 |
lineage1.1.2 | 5 |
18 | |
lineage4.3.1.1 | 1 |
La1.3 | 3 |
lineage4.1.2 | 4 |
lineage1.1.1.1 | 1 |
lineage1.1.3.1 | 1 |
lineage4.1.1.3 | 8 |
lineage4.2.2.2 | 2 |
lineage3.1.1 | 5 |
lineage3.1.2 | 1 |
lineage4.6 | 2 |
lineage4.1 | 2 |
lineage5.1.1 | 2 |
lineage4.3 | 2 |
La1.8.1 | 10 |
lineage4.3.4.1 | 6 |
lineage4.3.2.1 | 3 |
lineage4.7 | 2 |
lineage4.3.4.2.1 | 4 |
La1.2 | 2 |
lineage4.2.2 | 1 |
lineage4.9.1 | 1 |
lineage4.3.4 | 1 |
lineage4.4.1.2 | 1 |
lineage6 | 2 |
lineage4.4.2 | 5 |
lineage4.3.2 | 1 |
lineage4.6.5 | 1 |
lineage1.2.2.2 | 2 |
lineage4.1.1.2 | 1 |
lineage3.1.3 | 1 |
lineage4.1.4 | 1 |
lineage2.2.1.1 | 2 |
lineage1.2.1.2 | 1 |
lineage4.8;lineage4.3.3 | 4 |
lineage4.2.2.1 | 1 |
La1.4 | 1 |
lineage4.4 | 1 |
La1.7.1 | 3 |
lineage2.2 | 2 |
lineage4.6.1.1 | 2 |
lineage3.1.2.1 | 1 |
spoligotype | Count |
---|---|
None | 375 |
ID | Drug resistance | Lineage | Country iso2 | ERR2228810 | RR-TB | lineage4 | None | ERR2228815 | RR-TB | lineage4.8 | None | ERR4816866 | Other | lineage2.2.1 | None | ERR2228838 | RR-TB | lineage4.8 | None | ERR2229505 | Other | lineage4.8 | None | SAMN02380990 | MDR-TB | lineage4.6.1.2 | None | ERR4815816 | Other | lineage4.5 | gb | ERR2228890 | Other | lineage4 | None | ERR4815811 | HR-TB | lineage4.2.1.1 | None | ERR2228899 | RR-TB | lineage4.8 | None | ERR2228910 | Other | lineage4.8 | None | ERR2228900 | RR-TB | lineage4.8 | None | SRR4033549 | HR-TB | lineage2.2.2 | None | ERR4818655 | Other | lineage4.3.3 | None | ERR4818646 | Sensitive | lineage4.1.2.1 | None | ERR4817703 | Other | lineage1.1.1 | None | ERR4818698 | HR-TB | lineage2.2.1 | gb | ERR4818988 | Other | lineage1 | None | ERR4817895 | Other | lineage4.1.2.1 | None | ERR4817840 | Other | lineage3.1.2.2 | gb | ERR2513405 | Other | lineage2.2.1 | None | ERR4817915 | RR-TB | lineage4.9 | None | ERR4818724 | Other | lineage4.1.2.1 | gb | ERR4818726 | Other | lineage4.1.2.1 | None | ERR4817958 | Other | lineage4.2.1 | None | ERR4818221 | HR-TB | lineage4.2.1.1 | gb | ERR4818128 | RR-TB | lineage4.1.2.1 | None | ERR4818797 | Other | lineage4.5 | None | ERR4818370 | Other | lineage4.1.1 | None | SAMEA3501063 | RR-TB | lineage4.8 | None | SRR5007161 | RR-TB | lineage4.1.1.3.1 | None | SRR5007155 | HR-TB | lineage4.1.2.1 | None | ERR4818440 | Other | lineage6.3.1 | None | ERR4819096 | Other | lineage4.4.1.1 | None | SRR5341365 | Pre-XDR-TB | lineage3 | None | SAMEA3501067 | RR-TB | lineage4.8 | None | ERR4820484 | Other | lineage4.8 | None | ERR4820397 | Other | lineage4.9 | None | ERR4819622 | Other | lineage4.1.2.1 | None | ERR2514515 | Other | lineage4.2.1 | None | ERR4819242 | HR-TB | lineage4.6.2.2 | None | ERR4819331 | Sensitive | lineage4.3.4.2 | gb | ERR4819423 | Other | lineage4.6.2.2 | None | ERR2514356 | Sensitive | lineage4.8.2 | gb | ERR4819641 | HR-TB | lineage4.6.2.2 | None | ERR2514689 | Sensitive | lineage1.1.2 | gb | ERR4820498 | HR-TB | lineage4.8 | gb | ERR4819910 | Other | lineage4.9 | None | SAMEA3501070 | RR-TB | lineage4.8 | None | ERR1023509 | Other | None | ERR2515032 | Other | lineage3 | None | ERR4820829 | Other | lineage4.8 | None | ERR4820075 | Other | lineage4.1.2.1 | None | SAMEA3501052 | RR-TB | lineage4.8 | None | ERR4821057 | HR-TB | lineage4 | None | SRR6045422 | Other | lineage4.3.1.1 | None | ERR4821054 | Other | lineage3 | None | ERR4821505 | Other | La1.3 | gb | ERR4821119 | Other | lineage4.4.1.1 | None | ERR270777 | HR-TB | lineage4.1.2 | None | ERR4822004 | Other | lineage1.1.1.1 | gb | ERR4821417 | Other | lineage1.1.3.1 | None | SAMEA3501046 | RR-TB | lineage4.8 | None | SRR6045503 | HR-TB | None | SRR6045545 | HR-TB | lineage4.8 | gb | ERR4821332 | Other | lineage4.1.2.1 | gb | SRR6045849 | Other | lineage4.4.1.1 | None | ERR4821550 | Other | lineage2.2.1 | None | SRR6045603 | RR-TB | lineage4.1.1.3 | None | SRR6045655 | Other | lineage4.1.1.3.1 | None | SRR5818586 | RR-TB | lineage4.2.2.2 | None | SRR6045759 | RR-TB | lineage2.2.1 | gb | SRR6045843 | Other | lineage4.2.2.2 | None | SRR6044952 | RR-TB | lineage4.9 | None | SRR6045899 | Other | lineage4.1.2.1 | gb | SRR6045138 | Other | lineage3.1.1 | None | SRR6045002 | MDR-TB | lineage4.9 | None | SRR6045159 | Other | lineage3.1.1 | None | SRR6046208 | Other | lineage4 | None | SRR6046081 | Sensitive | lineage1.1.2 | gb | ERR4829181 | Sensitive | lineage1.1.2 | it | SRR6046376 | Other | lineage3 | None | ERR4829896 | MDR-TB | lineage4.1.2 | it | SRR6046273 | Other | lineage3.1.2 | None | ERR4829488 | MDR-TB | lineage4.1.2.1 | it | ERR4830549 | MDR-TB | lineage4.1.1.3 | None | ERR4829208 | RR-TB | lineage4.8 | None | ERR4829337 | Other | lineage4.8 | None | ERR4830856 | MDR-TB | lineage4.4.1.1 | None | ERR4829733 | HR-TB | lineage4.6.2.2 | it | ERR4828805 | Other | lineage4.6 | None | ERR4829500 | Sensitive | lineage4.1.2.1 | it | ERR4830892 | Pre-XDR-TB | lineage2.2.1 | None | ERR4829816 | RR-TB | lineage4.4.1.1 | None | ERR4829817 | Sensitive | lineage4.3.3 | it | ERR4828990 | RR-TB | lineage4.6.2.2 | None | ERR502470 | RR-TB | lineage4.9 | None | SRR6046839 | Other | lineage4.9 | None | SRR6152899 | MDR-TB | lineage2.2.2 | ca | ERR2886463 | Sensitive | lineage2.2.1 | None | SRR6397642 | RR-TB | None | SRR6982239 | HR-TB | lineage4.1.1.3 | None | SRR6785281 | Other | lineage4.2.1.1 | None | ERR4872322 | Pre-XDR-TB | lineage2.2.1 | None | SRR6982141 | RR-TB | lineage4.3.3 | None | SRR6789624 | MDR-TB | lineage4.1 | None | SRR6896545 | Other | lineage4.9 | None | ERR502517 | MDR-TB | lineage5.1.1 | None | SRR6982246 | Sensitive | lineage4 | None | ERR3275941 | RR-TB | lineage4.3 | nl | ERR5087846 | Other | La1.8.1 | None | ERR5087486 | Other | La1.8.1 | None | ERR3275996 | HR-TB | lineage4.3.4.1 | nl | SRR7131296 | Other | lineage4.3.3 | None | ERR5087596 | Other | La1.8.1 | None | SRR7131168 | Other | lineage4.1.2.1 | None | ERR5311077 | RR-TB | La1.8.1 | None | SRR7131122 | Other | lineage2.2.1 | None | SRR9971333 | MDR-TB | lineage4.1.1.3 | None | SRR9970980 | Other | lineage4.1.2 | None | SRR9971334 | MDR-TB | lineage4.3.2.1 | None | SRR7585400 | MDR-TB | lineage3 | None | SRR9970981 | RR-TB | lineage4.3.2.1 | None | SRR8600046 | Other | La1.8.1 | None | SRR7585435 | Other | lineage4.9 | None | SRR7645899 | RR-TB | lineage2.2.1 | None | SRR7645972 | MDR-TB | lineage4.2.1 | None | SRR7645906 | Other | lineage2.2.1 | None | SRR7645924 | Pre-XDR-TB | lineage4.2.1 | None | SRR7645927 | Other | lineage4.8 | None | SRR7645901 | MDR-TB | lineage2.2.1 | None | SRR7645928 | RR-TB | lineage4.7 | None | SRR7645971 | Other | lineage2.2.1 | None | SRR9971046 | MDR-TB | lineage4.8 | None | SRR7645977 | MDR-TB | lineage4.2.1 | None | SRR8649119 | Other | lineage4.6 | None | SRR7646018 | MDR-TB | lineage4.2.1 | None | SRR9971065 | RR-TB | lineage2.2.1 | None | SRR7755643 | Pre-XDR-TB | lineage4.2.1 | None | SRR9971080 | RR-TB | lineage2.2.1 | None | SRR9971114 | Other | lineage2.2.1 | None | SRR9971112 | Other | lineage2.2.1 | None | SRR7755657 | Other | lineage4.8 | None | SRR7755645 | Pre-XDR-TB | lineage2.2.1 | None | SRR7755649 | MDR-TB | lineage4.2.1 | None | SRR7755655 | Other | lineage4.1.2.1 | None | SRR9971113 | Other | lineage2.2.1 | None | SRR9971122 | MDR-TB | lineage4.8 | None | ERR036207 | Other | lineage4.9 | None | SRR7755688 | Pre-XDR-TB | lineage4.2.1 | None | SRR9217358 | Sensitive | lineage1.1.2 | None | SRR9217359 | MDR-TB | lineage1.1.2 | None | ERR017781 | Other | lineage3 | None | ERR323044 | HR-TB | lineage4.3.4.2.1 | None | SRR7765062 | Pre-XDR-TB | lineage4.1.2.1 | None | ERR323045 | HR-TB | None | SRR7851312 | Other | La1.2 | None | DRR184982 | RR-TB | lineage2.2.1 | None | DRR188816 | Sensitive | lineage4.2.2 | None | ERR019855 | Other | lineage3 | None | ERR037504 | Other | lineage4.9.1 | None | ERR1063859 | HR-TB | None | ERR1034647 | MDR-TB | lineage4.1.1.3 | None | ERR1034765 | HR-TB | lineage4.3.3 | None | ERR038289 | Other | lineage4.3.3 | None | ERR1023502 | MDR-TB | lineage2.2.1 | None | ERR1063862 | HR-TB | None | ERR1063858 | HR-TB | None | ERR10762275 | MDR-TB | lineage4.2.1 | None | ERR10762248 | MDR-TB | lineage4.2.1 | None | ERR10796571 | Other | lineage4.9 | None | ERR10796555 | Other | lineage4.1.2.1 | None | ERR10762495 | MDR-TB | lineage2.2.1 | None | ERR10796559 | Other | lineage4.9 | None | ERR10796562 | Other | lineage4.3.4.1 | None | ERR10796572 | Other | lineage4.3.4.1 | None | ERR10796568 | Other | lineage4.9 | None | ERR10796578 | Other | lineage2.2.1 | None | ERR10796595 | Other | lineage4.9 | None | ERR10796582 | HR-TB | lineage4.3 | None | ERR10796599 | Other | lineage4 | None | ERR10796594 | Other | lineage4.9 | None | ERR10796617 | Other | lineage4.3.4.1 | None | ERR10796618 | Other | lineage4.3.4.1 | None | ERR10796615 | Other | lineage4 | None | ERR10796627 | Other | lineage4 | None | ERR10796624 | Other | lineage4.8 | None | ERR10796623 | Other | lineage4.1.1 | None | ERR3283043 | Other | lineage4.9 | None | ERR3283006 | RR-TB | lineage4.9 | None | ERR3283033 | Sensitive | lineage4.9 | None | ERR10796628 | Other | lineage4.3.3 | None | ERR10796630 | HR-TB | None | ERR10796631 | Other | lineage4.3.4 | None | ERR108125 | Pre-XDR-TB | lineage4.9 | None | ERR126597 | MDR-TB | lineage4.4.1.2 | None | ERR3283008 | Other | lineage4.9 | None | ERR3283032 | HR-TB | None | ERR3283046 | MDR-TB | lineage4.9 | None | ERR3797062 | RR-TB | lineage4.9 | None | ERR3468613 | RR-TB | La1.8.1 | None | ERR3283051 | Other | lineage4.9 | None | ERR3439265 | Other | lineage4.9 | None | ERR3439489 | RR-TB | La1.8.1 | None | ERR3445503 | HR-TB | None | ERR3468488 | RR-TB | La1.8.1 | None | ERR4025018 | Other | lineage4.1.2.1 | None | ERR3797065 | MDR-TB | lineage4 | None | ERR3806588 | Other | lineage6 | None | ERR4586795 | Other | La1.8.1 | None | ERR4596944 | MDR-TB | lineage3.1.1 | None | ERR4596904 | MDR-TB | lineage3.1.1 | None | ERR4769423 | Other | La1.3 | None | ERR4808964 | RR-TB | lineage2.2.1 | None | ERR4769436 | Other | La1.3 | None | ERR4769554 | RR-TB | lineage4.9 | None | ERR4772218 | Other | La1.2 | None | ERR4811101 | Other | lineage4.4.2 | None | ERR4809333 | Pre-XDR-TB | lineage2.2.2 | None | ERR5917985 | MDR-TB | lineage2.2.1 | None | ERR4811708 | HR-TB | lineage4 | None | ERR5866530 | MDR-TB | lineage2.2.1 | None | ERR6197034 | Other | lineage4.9 | None | ERR5979454 | Pre-XDR-TB | lineage3 | None | ERR5987263 | MDR-TB | lineage2.2.1 | None | ERR5979407 | Other | lineage3 | None | ERR6866241 | Other | lineage4.3.2 | None | ERR6865587 | Other | lineage4.1.2.1 | None | ERR9787033 | Sensitive | lineage6 | None | ERR751345 | Other | lineage5.1.1 | None | ERR7801175 | RR-TB | lineage4.6.5 | None | ERR9119733 | MDR-TB | lineage2.2.1 | None | ERR9786164 | RR-TB | lineage4.1.1.3 | None | ERR736820 | MDR-TB | lineage1.2.2.2 | None | ERR8975044 | Other | lineage4.1.1.2 | None | ERR9117681 | Other | lineage4.3.3 | None | ERR9117826 | Other | lineage3.1.3 | None | ERR970449 | RR-TB | lineage4.1.1.3 | None | ERR9901813 | RR-TB | lineage4.1.4 | None | ERR987707 | MDR-TB | lineage4.7 | None | ERR983238 | MDR-TB | lineage2.2.1.1 | None | ERR9992879 | XDR-TB | lineage4.3.3 | None | ERR9992784 | Pre-XDR-TB | lineage2.2.2 | None | SRR023487 | RR-TB | lineage2.2.1 | None | SRR023450 | RR-TB | lineage2.2.1 | None | SRR1049675 | HR-TB | lineage2.2.1 | None | SRR10315567 | Other | lineage2.2.1 | None | SRR10315584 | Pre-XDR-TB | lineage4.4.1.1 | None | SRR1049581 | MDR-TB | lineage4.6.1.2 | None | SRR10214505 | Sensitive | lineage1.2.1.2 | None | SRR10315558 | Sensitive | lineage2.2.1 | None | SRR1049582 | MDR-TB | lineage4.6.1.2 | None | SRR1049677 | MDR-TB | lineage4.8;lineage4.3.3 | None | SRR1049674 | HR-TB | lineage2.2.1 | None | SRR1049676 | MDR-TB | lineage4.8;lineage4.3.3 | None | SRR1062919 | HR-TB | lineage2.2.1 | None | SRR1062880 | MDR-TB | lineage4.6.1.2 | None | SRR1062920 | MDR-TB | lineage4.8;lineage4.3.3 | None | SRR11342634 | MDR-TB | lineage4.8 | None | SRR1173139 | Sensitive | lineage4.9 | None | SRR11342690 | Sensitive | lineage4.1.2.1 | None | SRR11349147 | RR-TB | lineage4.3.2.1 | None | SRR1140574 | MDR-TB | lineage4.8;lineage4.3.3 | None | SRR1140724 | HR-TB | lineage2.2.1 | None | SRR1140712 | MDR-TB | lineage4.6.1.2 | None | SRR1172065 | Pre-XDR-TB | lineage3 | None | SRR1173281 | RR-TB | lineage3 | None | SRR1173185 | HR-TB | lineage4.9 | None | SRR1173421 | RR-TB | lineage4.9 | None | SRR1173310 | MDR-TB | None | SRR1173385 | Sensitive | lineage4.9 | None | SRR1173740 | Other | None | SRR1173450 | RR-TB | lineage4.9 | None | SRR1173515 | HR-TB | lineage4.9 | None | SRR1173687 | Pre-XDR-TB | lineage2.2.1 | None | SRR1173719 | HR-TB | lineage3 | None | SRR1175474 | HR-TB | lineage4.9 | None | SRR1173833 | Other | lineage4.9 | None | SRR1175473 | Other | lineage4.9 | None | SRR1180179 | Pre-XDR-TB | lineage3 | None | SRR1175472 | MDR-TB | lineage4 | None | SRR1175491 | MDR-TB | lineage4 | None | SRR1180440 | Other | lineage4.9 | None | SRR1180446 | Other | lineage4.9 | None | SRR1184308 | Sensitive | lineage4.9 | None | SRR13423641 | MDR-TB | lineage2.2.1 | None | SRR1196478 | MDR-TB | lineage4.9 | None | SRR11972425 | Pre-XDR-TB | lineage2.2.1 | None | SRR12634609 | MDR-TB | lineage3.1.1 | None | SRR1184329 | MDR-TB | lineage4.9 | None | SRR1196545 | HR-TB | lineage4.9 | None | SRR13423546 | Other | lineage4.4.2 | None | SRR14801325 | Pre-XDR-TB | lineage4.2.1 | None | SRR14334195 | Pre-XDR-TB | lineage2.2.1 | None | SRR14782539 | MDR-TB | lineage4.2.1 | None | SRR14334194 | Pre-XDR-TB | lineage2.2.1 | None | SRR15316595 | RR-TB | lineage4.4.2 | None | SRR2100877 | HR-TB | lineage4.1.2 | None | SRR15508556 | Other | lineage4.3.4.1 | None | SRR16149133 | MDR-TB | lineage4.2.2.1 | None | SRR16156188 | HR-TB | lineage4.9 | None | SRR16156804 | RR-TB | lineage4.9 | None | SRR16157123 | Other | lineage4.9 | None | SRR1792022 | Other | La1.8.1 | None | SRR18003033 | Other | lineage2.2.1 | None | SRR18909918 | Other | lineage2.2.1.1 | None | SRR20969542 | Other | lineage4.4.2 | None | SRR2100067 | Other | lineage4.3.3 | None | SRR16156697 | MDR-TB | lineage2.2.1 | None | SRR16156832 | RR-TB | None | SRR16278274 | Other | La1.4 | None | SRR16627752 | RR-TB | lineage4.4 | None | SRR17567917 | RR-TB | lineage4.4.1.1 | None | SRR18002949 | Sensitive | lineage2.2.1 | None | ERR4815784 | Other | lineage2.2.1 | gb | SRR21469201 | Other | La1.7.1 | None | SRR22175249 | Pre-XDR-TB | lineage2.2.1 | None | SRR22424765 | MDR-TB | lineage4 | None | SRR22424851 | MDR-TB | lineage4.3.3 | None | SAMEA3501065 | RR-TB | lineage4.8 | None | ERR176778 | HR-TB | None | ERR176779 | HR-TB | None | ERR4815301 | Other | lineage4.4.2 | None | ERR1815538 | Other | La1.7.1 | None | SRR21469200 | Other | La1.7.1 | None | SRR21714038 | Sensitive | lineage4.3.3 | None | SRR21722120 | Sensitive | lineage4.1.2.1 | None | ERR4815121 | HR-TB | lineage4.6.2.2 | None | ERR4815640 | Other | lineage3 | gb | ERR1750889 | Other | lineage4.4.1.1 | None | SRR3601585 | Pre-XDR-TB | lineage2.2 | None | SRR3619841 | Pre-XDR-TB | lineage2.2.1 | None | ERR4815443 | HR-TB | lineage4.1 | gb | SRR3619764 | Pre-XDR-TB | lineage2.2 | None | SRR3618864 | Pre-XDR-TB | lineage2.2.1 | None | ERR4815709 | Sensitive | lineage4.1.2.1 | None | ERR181824 | HR-TB | lineage4 | None | ERR4814763 | Other | lineage2.2.1 | None | ERR176651 | HR-TB | None | ERR4815517 | Other | lineage1.2.2.2 | None | ERR176580 | Sensitive | lineage4.3.4.2.1 | None | ERR181887 | HR-TB | None | ERR4815017 | Sensitive | lineage4.6.1.1 | None | SAMN02628522 | Pre-XDR-TB | lineage3 | ir | ERR4815079 | RR-TB | lineage3 | None | ERR2229541 | Other | lineage4.8 | None | ERR1198990 | Other | lineage4.6.1.1 | ug | ERR2228965 | Other | lineage4.8 | None | ERR2229540 | Other | lineage4.8 | None | ERR212125 | HR-TB | lineage4 | None | ERR4815909 | Other | lineage4.8 | None | ERR2027285 | MDR-TB | lineage4.6.2.2 | None | ERR2229147 | Other | lineage4.8 | None | ERR212114 | Other | lineage4.3.4.2.1 | None | ERR4817069 | RR-TB | None | ERR4815870 | HR-TB | lineage4.6.2.2 | gb | SAMEA3501015 | Other | lineage4.8 | None | ERR2027297 | RR-TB | lineage4.8 | None | ERR2229733 | Other | lineage4.8 | dk | ERR2027304 | Sensitive | lineage4.1.2.1 | None | ERR4816180 | Sensitive | lineage3.1.2.1 | None | ERR2229198 | MDR-TB | lineage4.8 | None | ERR2229204 | Other | lineage4.8 | None | ERR4816548 | MDR-TB | lineage4.5 | None | ERR2229436 | Other | lineage4.8 | None | ERR2229811 | Other | lineage4.8 | dk | ERR2229633 | Sensitive | lineage4.8 | None | ERR4816670 | Other | lineage4.3.4.2.1 | None | ERR2229366 | Other | lineage4.8 | None | ERR4816696 | Other | lineage3 | None | ERR4816702 | RR-TB | lineage4.6.2.2 | None | ERR4817204 | RR-TB | lineage4.9 | None | ERR4816755 | Other | lineage4.1.1.3 | None | ERR2229435 | HR-TB | lineage4.8 | None | ERR4816758 | Other | lineage4.8 | gb |
---|