EBG00000313339 - n.1248T>C
Drug resistance types
25 Sensitive
46 RR-TB
25 HR-TB
36 MDR-TB
20 Pre-XDR-TB
1 XDR-TB
115 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage2.2.1 | 39 |
| lineage4.1.1.3 | 8 |
| lineage4.8 | 48 |
| lineage3.1.1 | 4 |
| lineage4.9 | 50 |
| lineage4.1.1.1 | 2 |
| lineage1.2.2.2 | 1 |
| lineage4.1.2.1 | 5 |
| lineage4.3.2.1 | 3 |
| lineage4.2.2.2 | 2 |
| lineage4.3.4.1 | 7 |
| lineage3 | 11 |
| lineage4.3.4.2.1 | 7 |
| lineage4.6.2.2 | 2 |
| lineage3;lineage4 | 1 |
| lineage4.9.1 | 1 |
| La1.8.1 | 4 |
| La1.4 | 1 |
| lineage1.2.1.2 | 1 |
| lineage4.2.1 | 11 |
| lineage2.2.2 | 2 |
| 1 | |
| lineage4.4.2 | 4 |
| lineage4.3.3 | 7 |
| lineage2.2.1;lineage4.9 | 1 |
| La1.7.1 | 3 |
| lineage4.7 | 2 |
| lineage4.1.2 | 2 |
| lineage4.6.5 | 1 |
| lineage6.1.3 | 1 |
| lineage4.3 | 1 |
| lineage6.1.2 | 1 |
| lineage4 | 1 |
| lineage4.6.1.2 | 5 |
| La1.7.1;La1.7.X-unk4 | 1 |
| lineage4.8;lineage4.9 | 2 |
| lineage4.3.4.1;lineage4.9 | 1 |
| La1.3 | 2 |
| lineage4.4.1.2 | 1 |
| lineage4.2.1.1 | 1 |
| lineage4.6.1.1 | 1 |
| lineage4.4.1.1 | 1 |
| lineage4.3.3;lineage4.8 | 4 |
| lineage6.3.1 | 1 |
| lineage4.3;lineage4.9 | 1 |
| lineage1;lineage4.9 | 1 |
| lineage4.4 | 1 |
| La1.7.1;lineage4.9 | 1 |
| lineage4.1.1.2 | 1 |
| lineage4.2.2 | 1 |
| lineage5.1.1 | 2 |
| lineage2;lineage4 | 1 |
| lineage6.2.3 | 1 |
| lineage4.1.1.3.1;lineage4.9 | 1 |
| La1.2 | 1 |
| lineage2.2;lineage4 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 268 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR14334195 | Other | lineage2.2.1 | None | SRR6045603 | Other | lineage4.1.1.3 | None | SRR7755645 | Pre-XDR-TB | lineage2.2.1 | None | ERR978761_ERR978762_ERR978760 | RR-TB | lineage4.8 | None | ERR4596904 | MDR-TB | lineage3.1.1 | None | ERR181887 | Other | lineage4.9 | None | ERR978750_ERR978752_ERR978751 | RR-TB | lineage4.8 | None | ERR10796623 | Other | lineage4.1.1.1 | None | ERR978748 | Other | lineage4.8 | None | SRR1173515 | Sensitive | lineage4.9 | None | ERR970449 | RR-TB | lineage4.1.1.3 | None | ERR4816755 | Other | lineage4.1.1.3 | None | SRR10315567 | HR-TB | lineage2.2.1 | None | SRR16157123 | Other | lineage4.9 | None | ERR736820 | MDR-TB | lineage1.2.2.2 | None | SRR11342689 | Other | lineage4.1.2.1 | None | SRR9970981 | RR-TB | lineage4.3.2.1 | None | SRR5818586 | RR-TB | lineage4.2.2.2 | None | ERR10796617 | Other | lineage4.3.4.1 | None | SRR6046376 | Other | lineage3 | None | ERR11465192 | Sensitive | lineage4.3.4.2.1 | None | SRR1180179 | Pre-XDR-TB | lineage3 | None | ERR11465626 | Sensitive | lineage4.3.4.2.1 | None | ERR4819641 | Other | lineage4.6.2.2 | None | SRR3619841 | Pre-XDR-TB | lineage2.2.1 | None | SRR1173740 | Other | lineage3;lineage4 | None | ERR10796578 | Other | lineage2.2.1 | None | ERR037504 | Other | lineage4.9.1 | None | ERR3283051 | Other | lineage4.9 | None | SRR1792022 | Other | La1.8.1 | None | SRR1173185 | Other | lineage4.9 | None | SRR16278274 | Other | La1.4 | None | SRR10214505 | Sensitive | lineage1.2.1.2 | None | SRR9971112 | Other | lineage2.2.1 | None | SRR7645972 | MDR-TB | lineage4.2.1 | None | ERR212114 | Other | lineage4.3.4.2.1 | None | ERR2229811 | Other | lineage4.8 | dk | ERR1034647 | MDR-TB | lineage4.1.1.3 | None | ERR5979454 | Pre-XDR-TB | lineage3 | None | ERR9992784 | XDR-TB | lineage2.2.2 | None | SAMEA3501046 | RR-TB | lineage4.8 | None | ERR4817069 | RR-TB | None | ERR3275996 | HR-TB | lineage4.3.4.1 | nl | ERR3283008 | Other | lineage4.9 | None | SRR9971046 | MDR-TB | lineage4.8 | None | SRR9971122 | MDR-TB | lineage4.8 | None | ERR181824 | HR-TB | lineage4.9 | None | ERR5979407 | Other | lineage3 | None | SRR13423546 | Other | lineage4.4.2 | None | SRR5341365 | Pre-XDR-TB | lineage3 | None | SRR7755649 | MDR-TB | lineage4.2.1 | None | ERR10796555 | Other | lineage4.1.2.1 | None | SRR1181256 | Other | lineage4.9 | None | SRR2100067 | Other | lineage4.3.3 | None | ERR4811101 | Other | lineage4.4.2 | None | SRR15508556 | Other | lineage4.3.4.1 | None | SRR16156804 | Sensitive | lineage4.9 | None | SRR1173310 | Other | lineage3.1.1 | None | SRR12708406 | HR-TB | lineage2.2.1;lineage4.9 | None | ERR4817915 | Other | lineage4.9 | None | ERR1815538 | Other | La1.7.1 | None | SAMEA3501063 | RR-TB | lineage4.8 | None | SRR7645928 | Other | lineage4.7 | None | ERR10796562 | Other | lineage4.3.4.1 | None | ERR2228910 | Other | lineage4.8 | None | SRR023450 | RR-TB | lineage2.2.1 | None | SRR10315558 | Sensitive | lineage2.2.1 | None | ERR867524 | Pre-XDR-TB | lineage4.2.1 | None | SRR21469200 | Other | La1.7.1 | None | ERR978694_ERR978693 | Other | lineage4.8 | None | SRR6046839 | Other | lineage4.9 | None | ERR019855 | Other | lineage3 | None | ERR10796628 | Other | lineage4.3.3 | None | SRR11972425 | Pre-XDR-TB | lineage2.2.1 | None | SRR22175249 | Pre-XDR-TB | lineage2.2.1 | None | SRR9970980 | HR-TB | lineage4.1.2 | None | ERR7801175 | HR-TB | lineage4.6.5 | None | ERR3806588 | Other | lineage6.1.3 | None | SRR11342687 | RR-TB | lineage4.2.2.2 | None | ERR4872322 | Pre-XDR-TB | lineage2.2.1 | None | ERR867526 | MDR-TB | lineage2.2.1 | None | ERR3275941 | RR-TB | lineage4.3 | nl | ERR108125 | RR-TB | lineage4.9 | None | ERR987707 | MDR-TB | lineage4.7 | None | ERR9787033 | Sensitive | lineage6.1.2 | None | SAMEA3501065 | RR-TB | lineage4.8 | None | ERR2229198 | Sensitive | lineage4.8 | None | ERR270777 | HR-TB | lineage4.1.2 | None | ERR4811708 | HR-TB | lineage4 | None | SRR1062880 | MDR-TB | lineage4.6.1.2 | None | SRR7131296 | Other | lineage4.3.3 | None | SRR6982141 | Other | lineage4.3.3 | None | ERR3445503 | Other | La1.7.1;La1.7.X-unk4 | None | SRR7645901 | MDR-TB | lineage2.2.1 | None | ERR2228890 | Other | lineage4.8;lineage4.9 | None | ERR10796572 | Other | lineage4.3.4.1;lineage4.9 | None | SRR1049581 | MDR-TB | lineage4.6.1.2 | None | ERR1063862 | HR-TB | lineage4.9 | None | ERR176779 | HR-TB | lineage4.9 | None | ERR4769436 | Other | La1.3 | None | ERR5987263 | MDR-TB | lineage2.2.1 | None | ERR978747 | Other | lineage4.8 | None | ERR3468488 | Other | La1.8.1 | None | ERR1063849 | HR-TB | lineage4.9 | None | ERR2228900 | Other | lineage4.8 | None | SRR14334194 | Pre-XDR-TB | lineage2.2.1 | None | ERR126597 | HR-TB | lineage4.4.1.2 | None | ERR2886463 | Sensitive | lineage2.2.1 | None | ERR11465627 | Sensitive | lineage4.3.4.2.1 | None | SRR16156697 | RR-TB | lineage2.2.1 | None | SRR1184329 | Other | lineage4.9 | None | SRR9971113 | Other | lineage2.2.1 | None | ERR4830549 | MDR-TB | lineage4.1.1.3 | None | SRR8758877 | MDR-TB | lineage4.1.1.1 | None | ERR502470 | RR-TB | lineage4.9 | None | SRR9971080 | RR-TB | lineage2.2.1 | None | ERR2229147 | Other | lineage4.8 | None | ERR978726_ERR978727 | RR-TB | lineage4.8 | None | SRR1196478 | Other | lineage4.9 | None | SRR6785281 | Other | lineage4.2.1.1 | None | SRR7131122 | Other | lineage2.2.1 | None | ERR11465490 | Sensitive | lineage4.1.2.1 | None | SAMEA3501052 | RR-TB | lineage4.8 | None | SRR9971333 | MDR-TB | lineage4.1.1.3 | None | ERR1198990 | Other | lineage4.6.1.1 | ug | SRR1175491 | MDR-TB | lineage4.3.4.1 | None | SRR17567917 | RR-TB | lineage4.4.1.1 | None | SRR7755643 | Pre-XDR-TB | lineage4.2.1 | None | ERR017781 | Other | lineage3 | None | ERR038289 | Other | lineage4.3.3 | None | SRR1140724 | Other | lineage2.2.1 | None | ERR10796599 | Other | lineage4.8 | None | SRR7646018 | MDR-TB | lineage4.2.1 | None | ERR978727 | Other | lineage4.8 | None | ERR323044 | HR-TB | lineage4.3.4.2.1 | None | SRR5163959 | Other | lineage4.9 | None | ERR11465830 | Sensitive | lineage4.9 | None | ERR4596944 | MDR-TB | lineage3.1.1 | None | ERR10762275 | MDR-TB | lineage4.2.1 | None | SRR11349147 | RR-TB | lineage4.3.2.1 | None | SRR1049677 | MDR-TB | lineage4.3.3;lineage4.8 | None | SRR1175472 | RR-TB | lineage4.3.4.1 | None | SRR14782539 | MDR-TB | lineage4.2.1 | None | ERR560438 | Other | lineage4.9 | None | SRR7645906 | Other | lineage2.2.1 | None | SRR1049675 | HR-TB | lineage2.2.1 | None | ERR4808964 | RR-TB | lineage2.2.1 | None | ERR978733 | RR-TB | lineage4.8 | None | ERR11465829 | Sensitive | lineage4.9 | None | SRR1181403 | Other | lineage4.9 | None | ERR978746_ERR978747_ERR978748 | RR-TB | lineage4.8 | None | ERR4818440 | Other | lineage6.3.1 | None | ERR4809333 | Pre-XDR-TB | lineage2.2.2 | None | ERR4815121 | HR-TB | lineage4.6.2.2 | None | ERR036207 | Other | lineage4.3;lineage4.9 | None | ERR1034765 | HR-TB | lineage4.3.3 | None | SRR1140574 | MDR-TB | lineage4.3.3;lineage4.8 | None | SRR1173687 | Pre-XDR-TB | lineage2.2.1 | None | SRR1062919 | HR-TB | lineage2.2.1 | None | ERR2229436 | Other | lineage4.8 | None | ERR9119733 | MDR-TB | lineage2.2.1 | None | ERR978756 | Other | lineage4.8 | None | SRR15316595 | RR-TB | lineage4.4.2 | None | SRR7645899 | Other | lineage2.2.1 | None | SRR1173385 | Sensitive | lineage4.9 | None | SRR3618864 | Pre-XDR-TB | lineage2.2.1 | None | SAMEA3501015 | Other | lineage4.8 | None | ERR978752 | Other | lineage4.8 | None | ERR2228838 | Other | lineage4.8 | None | SRR7755688 | Pre-XDR-TB | lineage4.2.1 | None | SRR7645927 | Other | lineage4.8 | None | ERR323045 | HR-TB | lineage1;lineage4.9 | None | ERR978762 | Other | lineage4.8 | None | SRR16627752 | RR-TB | lineage4.4 | None | ERR978755_ERR978756_ERR978754_ERR978757 | RR-TB | lineage4.8 | None | ERR5087596 | Other | La1.8.1 | None | SRR16156188 | Sensitive | lineage4.9 | None | SRR21469201 | Other | La1.7.1 | None | SAMN02380990 | MDR-TB | lineage4.6.1.2 | None | SRR1184308 | Sensitive | lineage4.9 | None | SRR6789624 | HR-TB | lineage4.1.1.3 | None | ERR978760 | RR-TB | lineage4.8 | None | SRR20969542 | Other | lineage4.4.2 | None | ERR3283032 | Other | lineage4.9 | None | ERR1063859 | HR-TB | La1.7.1;lineage4.9 | None | ERR11466014 | Sensitive | lineage4.3.4.2.1 | None | SRR1196545 | Sensitive | lineage4.9 | None | ERR2229541 | Other | lineage4.8 | None | SRR1062920 | MDR-TB | lineage4.3.3;lineage4.8 | None | ERR2229366 | Other | lineage4.8 | None | ERR5311077 | Other | La1.8.1 | None | ERR3797062 | RR-TB | lineage4.9 | None | ERR1023509 | Other | lineage4.9 | None | SRR1180446 | Other | lineage4.9 | None | ERR3283043 | Other | lineage4.9 | None | SRR11342634 | MDR-TB | lineage4.8 | None | SRR9971065 | RR-TB | lineage2.2.1 | None | ERR4820484 | Sensitive | lineage4.8 | None | ERR10762248 | MDR-TB | lineage4.2.1 | None | SRR1175473 | Other | lineage4.9 | None | ERR3797065 | RR-TB | lineage4.9 | None | ERR978734_ERR978733_ERR978735 | RR-TB | lineage4.8 | None | ERR8975044 | Other | lineage4.1.1.2 | None | ERR978735 | Other | lineage4.8 | None | DRR188816 | Sensitive | lineage4.2.2 | None | ERR502517 | Other | lineage5.1.1 | None | ERR212125 | HR-TB | lineage4.9 | None | ERR1023502 | MDR-TB | lineage2;lineage4 | None | ERR867525 | Pre-XDR-TB | lineage2.2.1 | None | ERR3283006 | RR-TB | lineage4.9 | None | ERR978754 | RR-TB | lineage4.8 | None | SAMEA3501070 | RR-TB | lineage4.8 | None | ERR4830892 | Pre-XDR-TB | lineage2.2.1 | None | SRR1735598 | RR-TB | lineage4.9 | None | SAMEA3501067 | RR-TB | lineage4.8 | None | SRR1049582 | MDR-TB | lineage4.6.1.2 | None | SRR7585400 | MDR-TB | lineage3 | None | SRR7645971 | Other | lineage2.2.1 | None | ERR978757 | RR-TB | lineage4.8 | None | SRR11342646 | HR-TB | lineage3 | None | SRR1173281 | Other | lineage3 | None | ERR176778 | HR-TB | lineage4.9 | None | ERR978734 | RR-TB | lineage4.8 | None | SRR12634609 | MDR-TB | lineage3.1.1 | None | ERR978694 | Other | lineage4.8 | None | SAMN02628522 | Pre-XDR-TB | lineage3 | ir | ERR2513405 | Other | lineage2.2.1 | None | SRR1175474 | Other | lineage4.9 | None | SRR6044952 | Other | lineage4.9 | None | ERR2228810 | Other | lineage4.8;lineage4.9 | None | SRR023487 | RR-TB | lineage2.2.1 | None | ERR1063858 | HR-TB | lineage4.9 | None | SRR7765062 | Pre-XDR-TB | lineage4.1.2.1 | None | ERR978751 | Other | lineage4.8 | None | ERR10762495 | MDR-TB | lineage2.2.1 | None | SRR1049674 | HR-TB | lineage2.2.1 | None | SRR1140712 | MDR-TB | lineage4.6.1.2 | None | ERR176580 | Sensitive | lineage4.3.4.2.1 | None | ERR176651 | Other | lineage4.9 | None | ERR978750 | RR-TB | lineage4.8 | None | SRR21714038 | Sensitive | lineage4.3.3 | None | ERR3283046 | Sensitive | lineage4.9 | None | SRR7755657 | Other | lineage4.8 | None | ERR10796630 | Other | lineage6.2.3 | None | SRR9971114 | Other | lineage2.2.1 | None | SRR5007161 | RR-TB | lineage4.1.1.3.1;lineage4.9 | None | ERR978755 | RR-TB | lineage4.8 | None | ERR978761 | Other | lineage4.8 | None | SRR1049676 | MDR-TB | lineage4.3.3;lineage4.8 | None | SRR1180440 | Other | lineage4.9 | None | SRR7645977 | MDR-TB | lineage4.2.1 | None | SRR14801325 | Pre-XDR-TB | lineage4.2.1 | None | SRR1173719 | Other | lineage4.9 | None | ERR751345 | Other | lineage5.1.1 | None | ERR10796594 | Other | lineage4.9 | None | ERR4769554 | RR-TB | lineage4.9 | None | SRR11342669 | Other | lineage4.8 | None | ERR5162090 | RR-TB | lineage4.9 | None | SRR7755655 | Other | lineage4.1.2.1 | None | SRR6982239 | Sensitive | lineage4.1.1.3 | None | ERR10796571 | Other | lineage4.9 | None | DRR184982 | Other | lineage2.2.1 | None | SRR7851312 | Other | La1.2 | None | ERR11465833 | Sensitive | lineage4.3.2.1 | None | ERR10796559 | Other | lineage4.9 | None | ERR4769423 | Other | La1.3 | None | SRR16156832 | RR-TB | lineage2.2;lineage4 | None | ERR10796618 | Other | lineage4.3.4.1 | None |
|---|
