TB-Profiler result

Run: SRR1173385
Summary

Run ID: SRR1173385

Sample name:

Date: 03-04-2023 03:23:24

Number of reads: 11406

Percentage reads mapped: 2.46

Strain: lineage4.9

Drug-resistance: Sensitive

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Drug resistance: This table reports drug-resistance associated mutations found in known resistance genes
Drug Resistance Supporting mutations
Lineage Table: The lineage is inferred by analysing lineage specific SNPs
Lineage Family Main Spoligotype RDs Frequency
lineage4 Euro-American LAM;T;S;X;H None 1.0
lineage4.9 Euro-American (H37Rv-like) T1 None 1.0
Drug resistance-Associated Mutations: This table reports mutations found in candidate resistance genes which have been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction Drugs
Non-Associated Mutations: This table reports mutations found in candidate resistance genes which have not been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction
rpoB 760982 c.1176G>C synonymous_variant 1.0
rpoB 760985 c.1179G>C synonymous_variant 1.0
rpoB 760988 c.1182C>G synonymous_variant 1.0
rpoB 760991 c.1185G>C synonymous_variant 1.0
rpoB 760997 c.1191G>C synonymous_variant 1.0
rpoB 761015 c.1209G>C synonymous_variant 1.0
rpoB 761027 c.1221A>G synonymous_variant 1.0
rpoB 761036 c.1230G>C synonymous_variant 1.0
rpoB 761037 c.1231T>C synonymous_variant 1.0
rpoB 761057 c.1251G>C synonymous_variant 1.0
rpoB 761064 p.Ala420Ser missense_variant 1.0
rpoB 761097 c.1291_1293delAGCinsTCG synonymous_variant 1.0
rpoB 761102 c.1296A>G synonymous_variant 1.0
rpoB 761537 c.1731C>G synonymous_variant 1.0
rpoB 761555 c.1749G>C synonymous_variant 1.0
rpoB 761570 c.1764T>C synonymous_variant 1.0
rpoB 761612 c.1806G>C synonymous_variant 1.0
rpoB 761972 c.2166C>T synonymous_variant 1.0
rpoB 762020 p.Glu738Asp missense_variant 1.0
rpoB 762026 c.2220G>C synonymous_variant 1.0
rpoB 762030 p.Thr742Ser missense_variant 1.0
rpoB 762053 c.2247T>C synonymous_variant 1.0
rpoB 762057 p.Ile751Val missense_variant 1.0
rpoB 762062 c.2256T>C synonymous_variant 1.0
rpoB 762065 c.2259T>C synonymous_variant 1.0
rpoB 762068 c.2262C>T synonymous_variant 1.0
rpoB 762080 c.2274G>C synonymous_variant 1.0
rpoB 762083 c.2277T>C synonymous_variant 1.0
rpoB 762084 p.Ala760Pro missense_variant 1.0
rpoB 762101 c.2295C>G synonymous_variant 1.0
rpoB 762114 p.Ile770Val missense_variant 1.0
rpoB 762156 p.Val784Ile missense_variant 1.0
rpoB 762161 c.2355C>T synonymous_variant 1.0
rpoB 762175 c.2369_2370insCG frameshift_variant 1.0
rpoB 762179 c.2374_2375delGA frameshift_variant 1.0
rpoB 762185 c.2379G>T synonymous_variant 1.0
rpoB 762194 c.2388G>C synonymous_variant 1.0
rpoB 762209 c.2403C>G synonymous_variant 1.0
rpoB 762212 c.2406G>C synonymous_variant 1.0
rpoB 762233 c.2427G>C synonymous_variant 1.0
rpoB 762236 c.2430G>C synonymous_variant 1.0
rpoB 762245 c.2439G>C synonymous_variant 1.0
rpoC 762899 c.-471G>C upstream_gene_variant 1.0
rpoB 762909 p.Ile1035Leu missense_variant 1.0
rpoC 762920 c.-450C>T upstream_gene_variant 1.0
rpoC 762923 c.-447C>G upstream_gene_variant 1.0
rpoC 762929 c.-441G>C upstream_gene_variant 1.0
rpoC 762962 c.-408C>T upstream_gene_variant 1.0
rpoC 762983 c.-387C>T upstream_gene_variant 1.0
rpoC 762989 c.-381G>C upstream_gene_variant 1.0
rpoC 762995 c.-375G>T upstream_gene_variant 1.0
rpoC 763456 c.87A>G synonymous_variant 1.0
rpoC 763468 c.99G>C synonymous_variant 1.0
rpoC 763486 c.117T>C synonymous_variant 1.0
rpoC 763492 c.123G>C synonymous_variant 1.0
rpoC 763504 c.135C>A synonymous_variant 1.0
rpoC 763507 c.138G>C synonymous_variant 1.0
rpoC 763528 c.159G>T synonymous_variant 1.0
rpoC 763534 c.165T>C synonymous_variant 1.0
rpoC 763537 c.168C>G synonymous_variant 1.0
rpoC 763546 c.177A>G synonymous_variant 1.0
rpoC 763570 c.201G>T synonymous_variant 1.0
rpoC 763573 c.204G>C synonymous_variant 1.0
rpoC 763615 c.246G>C synonymous_variant 1.0
rpoC 763618 c.249C>T synonymous_variant 1.0
rpoC 763666 c.297G>T synonymous_variant 1.0
rpoC 763669 c.300C>T synonymous_variant 1.0
rpoC 763696 c.327T>C synonymous_variant 1.0
rpoC 763699 c.330G>T synonymous_variant 1.0
rpoC 763708 c.339G>C synonymous_variant 1.0
rpoC 763711 c.342G>C synonymous_variant 1.0
rpoC 763714 c.345G>C synonymous_variant 1.0
rpoC 763717 c.348T>C synonymous_variant 1.0
rpoC 763729 c.360G>C synonymous_variant 1.0
rpoC 763732 c.363C>G synonymous_variant 1.0
rpoC 763747 c.378G>A synonymous_variant 1.0
rpoC 763751 p.Ile128Val missense_variant 1.0
rpoC 764387 c.1018T>C synonymous_variant 1.0
rpoC 764405 c.1036_1038delAGGinsCGC synonymous_variant 1.0
rpoC 764428 c.1059G>C synonymous_variant 1.0
rpoC 764434 c.1065A>G synonymous_variant 1.0
rpoC 764435 c.1066_1068delAGGinsCGC synonymous_variant 1.0
rpoC 764440 c.1071G>C synonymous_variant 1.0
rpoC 764441 p.Ile358Leu missense_variant 1.0
rpoC 764446 c.1077T>C synonymous_variant 1.0
rpoC 764449 c.1080G>C synonymous_variant 1.0
rpoC 764458 c.1089G>C synonymous_variant 1.0
rpoC 764461 c.1092A>G synonymous_variant 1.0
rpoC 764470 c.1101C>G synonymous_variant 1.0
rpoC 764485 c.1116G>C synonymous_variant 1.0
rpoC 764491 c.1122G>C synonymous_variant 1.0
rpoC 764521 c.1152T>C synonymous_variant 1.0
rpoC 764533 c.1164C>T synonymous_variant 1.0
rpoC 764536 c.1167G>T synonymous_variant 1.0
rpoC 764539 c.1170C>G synonymous_variant 1.0
rpoC 764548 c.1179G>T synonymous_variant 1.0
rpoC 764551 c.1182G>C synonymous_variant 1.0
rpoC 764563 c.1194G>C synonymous_variant 1.0
rpoC 764566 c.1197C>G synonymous_variant 1.0
rpoC 764572 c.1203G>C synonymous_variant 1.0
rpoC 764575 c.1206T>G synonymous_variant 1.0
rpoC 764576 c.1207_1208delTCinsAG synonymous_variant 1.0
rpoC 764581 c.1212T>C synonymous_variant 1.0
rpoC 764582 p.Leu405Met missense_variant 1.0
rpoC 764605 c.1236G>C synonymous_variant 1.0
rpoC 764611 c.1242G>T synonymous_variant 1.0
rpoC 764656 c.1287C>G synonymous_variant 1.0
rpoC 764662 c.1293G>C synonymous_variant 1.0
rpoC 764668 c.1299C>T synonymous_variant 1.0
rpoC 764701 c.1332C>G synonymous_variant 1.0
rpoC 764705 p.Leu446Ala missense_variant 1.0
rpoC 764722 c.1353G>C synonymous_variant 1.0
rpoC 764746 c.1377G>C synonymous_variant 1.0
rpoC 764758 c.1389C>G synonymous_variant 1.0
rpoC 764764 c.1395T>C synonymous_variant 1.0
rpoC 764768 p.Gln467Lys missense_variant 0.33
rpoC 764780 c.1411_1413delAGCinsTCG synonymous_variant 1.0
rpoC 764797 c.1428G>C synonymous_variant 1.0
rpsL 781766 c.207C>T synonymous_variant 1.0
rpsL 781772 c.213C>A synonymous_variant 1.0
rpsL 781793 c.234G>C synonymous_variant 1.0
rpsL 781796 p.Met79Ile missense_variant 1.0
rpsL 781802 c.243G>C synonymous_variant 1.0
rpsL 781808 c.249C>T synonymous_variant 1.0
rpsL 781811 c.252C>T synonymous_variant 1.0
rpsL 781817 c.258G>T synonymous_variant 1.0
rpsL 781832 c.273T>G synonymous_variant 1.0
rpsL 781838 c.279G>T synonymous_variant 1.0
rpsL 781841 c.282C>T synonymous_variant 1.0
rpsL 781859 c.300T>C synonymous_variant 1.0
rpsL 781865 c.306G>C synonymous_variant 1.0
rpsL 781868 c.309T>C synonymous_variant 1.0
rpsL 781871 c.312G>C synonymous_variant 1.0
rpsL 781892 c.333A>G synonymous_variant 1.0
rpsL 781898 c.339A>C synonymous_variant 1.0
rplC 800633 c.-176T>C upstream_gene_variant 1.0
rplC 800643 c.-166_-164delCGCinsAAG upstream_gene_variant 1.0
rplC 800648 c.-161A>G upstream_gene_variant 1.0
rplC 800654 c.-155T>C upstream_gene_variant 1.0
rplC 800669 c.-140G>T upstream_gene_variant 1.0
rplC 800672 c.-137G>C upstream_gene_variant 1.0
rplC 800693 c.-116A>C upstream_gene_variant 1.0
rplC 800702 c.-107G>C upstream_gene_variant 1.0
rplC 800703 c.-106_-104delTTGinsCTC upstream_gene_variant 1.0
rplC 800715 c.-94A>C upstream_gene_variant 1.0
rplC 800720 c.-89T>C upstream_gene_variant 1.0
rplC 800735 c.-74C>G upstream_gene_variant 1.0
rplC 800742 c.-67G>T upstream_gene_variant 1.0
rplC 800747 c.-62C>G upstream_gene_variant 1.0
rplC 800753 c.-56C>T upstream_gene_variant 1.0
rplC 800754 c.-55A>C upstream_gene_variant 1.0
rplC 800762 c.-47T>C upstream_gene_variant 1.0
rplC 800769 c.-40A>G upstream_gene_variant 1.0
rrs 1471969 n.124T>C non_coding_transcript_exon_variant 1.0
rrs 1471970 n.125G>A non_coding_transcript_exon_variant 1.0
rrs 1471980 n.135G>T non_coding_transcript_exon_variant 1.0
rrs 1472106 n.261G>A non_coding_transcript_exon_variant 1.0
rrs 1472108 n.263C>T non_coding_transcript_exon_variant 1.0
rrs 1472148 n.303T>C non_coding_transcript_exon_variant 1.0
rrs 1472150 n.305T>A non_coding_transcript_exon_variant 1.0
rrs 1472172 n.327T>C non_coding_transcript_exon_variant 1.0
rrs 1472225 n.380C>A non_coding_transcript_exon_variant 1.0
rrs 1472251 n.406G>A non_coding_transcript_exon_variant 1.0
rrs 1472286 n.441C>G non_coding_transcript_exon_variant 1.0
rrs 1472338 n.493A>G non_coding_transcript_exon_variant 1.0
rrs 1472344 n.499C>T non_coding_transcript_exon_variant 1.0
rrs 1472379 n.534T>C non_coding_transcript_exon_variant 1.0
rrs 1472382 n.537G>A non_coding_transcript_exon_variant 1.0
rrs 1472400 n.555C>T non_coding_transcript_exon_variant 1.0
rrs 1472422 n.577T>C non_coding_transcript_exon_variant 1.0
rrs 1472425 n.580T>C non_coding_transcript_exon_variant 1.0
rrs 1472507 n.662C>T non_coding_transcript_exon_variant 1.0
rrs 1472508 n.663T>C non_coding_transcript_exon_variant 1.0
rrs 1472530 n.685G>A non_coding_transcript_exon_variant 1.0
rrs 1472571 n.726G>A non_coding_transcript_exon_variant 1.0
rrs 1472581 n.736A>C non_coding_transcript_exon_variant 1.0
rrs 1472582 n.737G>A non_coding_transcript_exon_variant 1.0
rrs 1472584 n.739A>T non_coding_transcript_exon_variant 1.0
rrs 1472655 n.810G>T non_coding_transcript_exon_variant 1.0
rrs 1472660 n.815T>A non_coding_transcript_exon_variant 1.0
rrs 1472670 n.825G>T non_coding_transcript_exon_variant 1.0
rrs 1472690 n.845C>G non_coding_transcript_exon_variant 1.0
rrs 1472697 n.852T>C non_coding_transcript_exon_variant 1.0
rrs 1472714 n.869A>T non_coding_transcript_exon_variant 1.0
rrs 1472779 n.934G>A non_coding_transcript_exon_variant 0.96
rrs 1472793 n.948A>C non_coding_transcript_exon_variant 0.96
rrs 1472803 n.958T>C non_coding_transcript_exon_variant 0.94
rrs 1472824 n.979T>A non_coding_transcript_exon_variant 0.75
rrs 1472825 n.980G>A non_coding_transcript_exon_variant 0.67
rrs 1472828 n.983T>C non_coding_transcript_exon_variant 0.67
rrs 1472873 n.1028C>T non_coding_transcript_exon_variant 0.5
rrs 1472875 n.1030T>G non_coding_transcript_exon_variant 0.5
rrs 1472878 n.1033G>A non_coding_transcript_exon_variant 0.67
rrs 1472880 n.1035G>A non_coding_transcript_exon_variant 0.67
rrs 1473026 n.1181T>C non_coding_transcript_exon_variant 1.0
rrs 1473055 n.1210C>T non_coding_transcript_exon_variant 1.0
rrs 1473056 n.1211A>T non_coding_transcript_exon_variant 1.0
rrs 1473062 n.1217T>G non_coding_transcript_exon_variant 1.0
rrs 1473068 n.1223A>G non_coding_transcript_exon_variant 1.0
rrs 1473089 n.1244A>T non_coding_transcript_exon_variant 1.0
rrs 1473091 n.1246G>A non_coding_transcript_exon_variant 1.0
rrs 1473109 n.1264T>C non_coding_transcript_exon_variant 1.0
rrs 1473110 n.1265T>G non_coding_transcript_exon_variant 1.0
rrs 1473111 n.1266A>G non_coding_transcript_exon_variant 1.0
rrs 1473120 n.1275C>T non_coding_transcript_exon_variant 1.0
rrs 1473121 n.1276T>C non_coding_transcript_exon_variant 1.0
rrs 1473122 n.1277T>A non_coding_transcript_exon_variant 1.0
rrs 1473145 n.1300C>T non_coding_transcript_exon_variant 1.0
rrs 1473166 n.1321G>A non_coding_transcript_exon_variant 1.0
rrs 1473179 n.1334C>T non_coding_transcript_exon_variant 1.0
rrs 1473201 n.1356A>T non_coding_transcript_exon_variant 1.0
rrs 1473202 n.1357C>T non_coding_transcript_exon_variant 1.0
rrs 1473252 n.1407T>C non_coding_transcript_exon_variant 1.0
rrs 1473276 n.1431A>G non_coding_transcript_exon_variant 1.0
rrs 1473283 n.1438T>C non_coding_transcript_exon_variant 1.0
rrs 1473315 n.1470T>C non_coding_transcript_exon_variant 1.0
rrs 1473316 n.1471C>T non_coding_transcript_exon_variant 1.0
rrl 1473668 n.11C>T non_coding_transcript_exon_variant 1.0
rrl 1473679 n.22T>C non_coding_transcript_exon_variant 1.0
rrl 1473696 n.39T>C non_coding_transcript_exon_variant 1.0
rrl 1473698 n.41G>A non_coding_transcript_exon_variant 1.0
rrl 1473699 n.42A>G non_coding_transcript_exon_variant 1.0
rrl 1473702 n.45G>A non_coding_transcript_exon_variant 1.0
rrl 1473724 n.67T>C non_coding_transcript_exon_variant 1.0
rrl 1473725 n.68G>A non_coding_transcript_exon_variant 1.0
rrl 1473731 n.74T>G non_coding_transcript_exon_variant 1.0
rrl 1473732 n.75G>T non_coding_transcript_exon_variant 1.0
rrl 1473735 n.78T>C non_coding_transcript_exon_variant 1.0
rrl 1473752 n.95G>A non_coding_transcript_exon_variant 1.0
rrl 1473756 n.99G>T non_coding_transcript_exon_variant 1.0
rrl 1473758 n.101G>T non_coding_transcript_exon_variant 1.0
rrl 1473765 n.108A>G non_coding_transcript_exon_variant 1.0
rrl 1473768 n.111A>G non_coding_transcript_exon_variant 1.0
rrl 1474151 n.494C>T non_coding_transcript_exon_variant 1.0
rrl 1474153 n.496C>G non_coding_transcript_exon_variant 1.0
rrl 1474166 n.509G>C non_coding_transcript_exon_variant 1.0
rrl 1474179 n.522C>T non_coding_transcript_exon_variant 1.0
rrl 1474183 n.526T>C non_coding_transcript_exon_variant 1.0
rrl 1474184 n.527C>T non_coding_transcript_exon_variant 1.0
rrl 1474186 n.529A>G non_coding_transcript_exon_variant 1.0
rrl 1474200 n.545delT non_coding_transcript_exon_variant 1.0
rrl 1474232 n.575C>G non_coding_transcript_exon_variant 1.0
rrl 1474239 n.582G>C non_coding_transcript_exon_variant 1.0
rrl 1474249 n.592G>T non_coding_transcript_exon_variant 1.0
rrl 1474275 n.618T>G non_coding_transcript_exon_variant 1.0
rrl 1474317 n.660G>T non_coding_transcript_exon_variant 1.0
rrl 1474348 n.691C>T non_coding_transcript_exon_variant 1.0
rrl 1474351 n.694G>C non_coding_transcript_exon_variant 1.0
rrl 1474353 n.696A>G non_coding_transcript_exon_variant 1.0
rrl 1474354 n.697C>T non_coding_transcript_exon_variant 1.0
rrl 1474355 n.698A>G non_coding_transcript_exon_variant 1.0
rrl 1474359 n.702C>A non_coding_transcript_exon_variant 1.0
rrl 1474362 n.705A>G non_coding_transcript_exon_variant 1.0
rrl 1474381 n.724T>A non_coding_transcript_exon_variant 1.0
rrl 1474387 n.730C>T non_coding_transcript_exon_variant 1.0
rrl 1474402 n.745T>C non_coding_transcript_exon_variant 1.0
rrl 1474406 n.749T>C non_coding_transcript_exon_variant 1.0
rrl 1474476 n.819C>G non_coding_transcript_exon_variant 1.0
rrl 1474483 n.826C>G non_coding_transcript_exon_variant 1.0
rrl 1474488 n.831G>T non_coding_transcript_exon_variant 1.0
rrl 1474496 n.839C>G non_coding_transcript_exon_variant 1.0
rrl 1474497 n.840G>A non_coding_transcript_exon_variant 1.0
rrl 1474626 n.969T>C non_coding_transcript_exon_variant 1.0
rrl 1474628 n.971C>T non_coding_transcript_exon_variant 1.0
rrl 1474632 n.975G>T non_coding_transcript_exon_variant 1.0
rrl 1474636 n.979A>T non_coding_transcript_exon_variant 1.0
rrl 1474637 n.980C>T non_coding_transcript_exon_variant 1.0
rrl 1474638 n.981C>G non_coding_transcript_exon_variant 1.0
rrl 1474639 n.982G>C non_coding_transcript_exon_variant 1.0
rrl 1474651 n.995delT non_coding_transcript_exon_variant 1.0
rrl 1474660 n.1003G>A non_coding_transcript_exon_variant 1.0
rrl 1474662 n.1005C>G non_coding_transcript_exon_variant 1.0
rrl 1474676 n.1019T>C non_coding_transcript_exon_variant 1.0
rrl 1474677 n.1020A>G non_coding_transcript_exon_variant 1.0
rrl 1474688 n.1031G>C non_coding_transcript_exon_variant 1.0
rrl 1474690 n.1033C>T non_coding_transcript_exon_variant 1.0
rrl 1474709 n.1053_1056delTGGT non_coding_transcript_exon_variant 1.0
rrl 1474717 n.1060_1061insGTGAG non_coding_transcript_exon_variant 1.0
rrl 1474722 n.1065T>C non_coding_transcript_exon_variant 1.0
rrl 1474734 n.1077G>T non_coding_transcript_exon_variant 1.0
rrl 1474736 n.1079C>T non_coding_transcript_exon_variant 1.0
rrl 1474751 n.1094G>A non_coding_transcript_exon_variant 1.0
rrl 1474760 n.1103A>G non_coding_transcript_exon_variant 1.0
rrl 1474777 n.1120T>G non_coding_transcript_exon_variant 1.0
rrl 1474779 n.1122G>A non_coding_transcript_exon_variant 1.0
rrl 1474780 n.1123C>T non_coding_transcript_exon_variant 1.0
rrl 1474783 n.1126G>A non_coding_transcript_exon_variant 1.0
rrl 1474794 n.1137C>T non_coding_transcript_exon_variant 1.0
rrl 1474801 n.1144G>A non_coding_transcript_exon_variant 1.0
rrl 1474802 n.1145T>C non_coding_transcript_exon_variant 1.0
rrl 1474823 n.1166C>G non_coding_transcript_exon_variant 1.0
rrl 1474831 n.1174A>G non_coding_transcript_exon_variant 1.0
rrl 1474904 n.1247G>C non_coding_transcript_exon_variant 1.0
rrl 1474905 n.1248T>C non_coding_transcript_exon_variant 1.0
rrl 1474913 n.1256T>C non_coding_transcript_exon_variant 1.0
rrl 1474933 n.1276A>G non_coding_transcript_exon_variant 1.0
rrl 1474934 n.1277C>T non_coding_transcript_exon_variant 1.0
rrl 1474945 n.1288C>T non_coding_transcript_exon_variant 1.0
rrl 1475129 n.1472G>A non_coding_transcript_exon_variant 1.0
rrl 1475175 n.1518G>C non_coding_transcript_exon_variant 1.0
rrl 1475188 n.1531C>G non_coding_transcript_exon_variant 1.0
rrl 1475499 n.1842C>T non_coding_transcript_exon_variant 1.0
rrl 1475508 n.1851A>T non_coding_transcript_exon_variant 1.0
rrl 1475526 n.1869C>A non_coding_transcript_exon_variant 1.0
rrl 1475532 n.1875A>G non_coding_transcript_exon_variant 1.0
rrl 1475539 n.1882A>T non_coding_transcript_exon_variant 1.0
rrl 1475542 n.1885A>G non_coding_transcript_exon_variant 1.0
rrl 1475544 n.1887A>T non_coding_transcript_exon_variant 1.0
rrl 1475545 n.1888T>G non_coding_transcript_exon_variant 1.0
rrl 1475649 n.1992A>G non_coding_transcript_exon_variant 1.0
rrl 1475655 n.1998T>C non_coding_transcript_exon_variant 1.0
rrl 1475659 n.2002G>A non_coding_transcript_exon_variant 1.0
rrl 1475696 n.2039T>C non_coding_transcript_exon_variant 1.0
rrl 1475699 n.2042C>T non_coding_transcript_exon_variant 1.0
rrl 1475703 n.2046A>G non_coding_transcript_exon_variant 1.0
rrl 1475740 n.2083G>C non_coding_transcript_exon_variant 1.0
rrl 1475747 n.2090A>G non_coding_transcript_exon_variant 1.0
rrl 1475753 n.2096C>G non_coding_transcript_exon_variant 1.0
rrl 1475769 n.2112T>C non_coding_transcript_exon_variant 1.0
rrl 1475775 n.2118G>T non_coding_transcript_exon_variant 1.0
rrl 1475781 n.2124T>C non_coding_transcript_exon_variant 1.0
rrl 1475788 n.2131C>G non_coding_transcript_exon_variant 1.0
rrl 1475883 n.2226A>G non_coding_transcript_exon_variant 1.0
rrl 1475900 n.2243A>G non_coding_transcript_exon_variant 0.98
rrl 1475902 n.2245T>C non_coding_transcript_exon_variant 1.0
rrl 1475906 n.2249C>T non_coding_transcript_exon_variant 1.0
rrl 1475937 n.2280A>T non_coding_transcript_exon_variant 1.0
rrl 1475943 n.2286G>A non_coding_transcript_exon_variant 1.0
rrl 1475952 n.2295A>G non_coding_transcript_exon_variant 1.0
rrl 1475970 n.2313C>T non_coding_transcript_exon_variant 1.0
rrl 1475975 n.2318C>T non_coding_transcript_exon_variant 1.0
rrl 1475977 n.2320A>G non_coding_transcript_exon_variant 1.0
rrl 1475978 n.2321C>T non_coding_transcript_exon_variant 1.0
rrl 1475982 n.2325G>A non_coding_transcript_exon_variant 1.0
rrl 1475988 n.2331A>G non_coding_transcript_exon_variant 1.0
rrl 1475997 n.2340A>T non_coding_transcript_exon_variant 1.0
rrl 1476001 n.2344T>C non_coding_transcript_exon_variant 1.0
rrl 1476030 n.2373A>G non_coding_transcript_exon_variant 1.0
rrl 1476126 n.2469C>T non_coding_transcript_exon_variant 1.0
rrl 1476130 n.2473G>A non_coding_transcript_exon_variant 1.0
rrl 1476131 n.2474C>T non_coding_transcript_exon_variant 1.0
rrl 1476164 n.2507A>G non_coding_transcript_exon_variant 1.0
rrl 1476165 n.2508T>A non_coding_transcript_exon_variant 1.0
rrl 1476194 n.2537A>G non_coding_transcript_exon_variant 1.0
rrl 1476200 n.2543A>T non_coding_transcript_exon_variant 1.0
rrl 1476201 n.2544C>T non_coding_transcript_exon_variant 1.0
rrl 1476214 n.2557G>T non_coding_transcript_exon_variant 1.0
rrl 1476215 n.2558C>T non_coding_transcript_exon_variant 1.0
rrl 1476224 n.2567A>G non_coding_transcript_exon_variant 1.0
rrl 1476245 n.2588C>T non_coding_transcript_exon_variant 1.0
rrl 1476251 n.2594T>C non_coding_transcript_exon_variant 1.0
rrl 1476252 n.2595T>G non_coding_transcript_exon_variant 1.0
rrl 1476255 n.2598A>G non_coding_transcript_exon_variant 1.0
rrl 1476256 n.2599A>G non_coding_transcript_exon_variant 1.0
rrl 1476260 n.2603A>G non_coding_transcript_exon_variant 1.0
rrl 1476281 n.2624T>C non_coding_transcript_exon_variant 1.0
rrl 1476295 n.2638C>G non_coding_transcript_exon_variant 1.0
rrl 1476296 n.2639C>T non_coding_transcript_exon_variant 1.0
rrl 1476297 n.2640C>G non_coding_transcript_exon_variant 1.0
rrl 1476298 n.2641C>G non_coding_transcript_exon_variant 1.0
rrl 1476300 n.2643G>T non_coding_transcript_exon_variant 0.75
rrl 1476301 n.2644A>T non_coding_transcript_exon_variant 1.0
rrl 1476309 n.2652G>C non_coding_transcript_exon_variant 1.0
rrl 1476311 n.2654G>C non_coding_transcript_exon_variant 1.0
rrl 1476428 n.2771C>T non_coding_transcript_exon_variant 1.0
rrl 1476429 n.2772A>C non_coding_transcript_exon_variant 1.0
rrl 1476466 n.2809C>T non_coding_transcript_exon_variant 1.0
rrl 1476506 n.2849T>C non_coding_transcript_exon_variant 1.0
rrl 1476515 n.2858C>T non_coding_transcript_exon_variant 1.0
rrl 1476524 n.2867C>A non_coding_transcript_exon_variant 1.0
rrl 1476525 n.2868A>G non_coding_transcript_exon_variant 1.0
rrl 1476529 n.2872A>T non_coding_transcript_exon_variant 1.0
rrl 1476530 n.2873C>A non_coding_transcript_exon_variant 1.0
rrl 1476536 n.2879G>A non_coding_transcript_exon_variant 1.0
rrl 1476538 n.2881A>G non_coding_transcript_exon_variant 1.0
rrl 1476539 n.2882A>G non_coding_transcript_exon_variant 1.0
rrl 1476540 n.2883C>G non_coding_transcript_exon_variant 1.0
rrl 1476584 n.2927C>T non_coding_transcript_exon_variant 1.0
rrl 1476585 n.2928A>G non_coding_transcript_exon_variant 1.0
rrl 1476594 n.2937C>T non_coding_transcript_exon_variant 1.0
rrl 1476596 n.2939C>T non_coding_transcript_exon_variant 1.0
rrl 1476601 n.2944G>A non_coding_transcript_exon_variant 1.0
rrl 1476607 n.2950C>T non_coding_transcript_exon_variant 1.0
rrl 1476608 n.2951C>G non_coding_transcript_exon_variant 1.0
rrl 1476614 n.2957A>T non_coding_transcript_exon_variant 1.0
rrl 1476616 n.2959A>G non_coding_transcript_exon_variant 1.0
rrl 1476619 n.2962C>T non_coding_transcript_exon_variant 1.0
rrl 1476628 n.2971T>A non_coding_transcript_exon_variant 1.0
rrl 1476629 n.2972C>A non_coding_transcript_exon_variant 1.0
rpsA 1834046 p.Ile169Leu missense_variant 1.0
rpsA 1834054 c.513C>G synonymous_variant 1.0
rpsA 1834093 c.552G>C synonymous_variant 1.0
rpsA 1834102 c.561T>C synonymous_variant 1.0
rpsA 1834114 c.573G>C synonymous_variant 1.0
rpsA 1834189 c.648G>C synonymous_variant 1.0
rpsA 1834210 c.669C>T synonymous_variant 1.0
rpsA 1834213 c.672G>C synonymous_variant 1.0
rpsA 1834219 c.678C>G synonymous_variant 1.0
rpsA 1834225 c.684C>G synonymous_variant 1.0
rpsA 1834231 c.690T>C synonymous_variant 1.0
rpsA 1834234 c.693G>C synonymous_variant 1.0
rpsA 1834327 c.786G>C synonymous_variant 1.0
rpsA 1834348 c.807T>C synonymous_variant 1.0
rpsA 1834354 c.813G>C synonymous_variant 1.0
rpsA 1834357 c.816T>C synonymous_variant 1.0
rpsA 1834360 c.819G>C synonymous_variant 1.0
rpsA 1834361 c.820T>C synonymous_variant 1.0
rpsA 1834366 c.825A>G synonymous_variant 1.0
rpsA 1834378 c.837T>G synonymous_variant 1.0
rpsA 1834395 p.Arg285Gln missense_variant 1.0
rpsA 1834399 p.His286Gln missense_variant 1.0
rpoA 3877962 c.546G>T synonymous_variant 1.0
rpoA 3877968 c.540C>G synonymous_variant 1.0
rpoA 3877971 p.Asp179Glu missense_variant 1.0
rpoA 3877974 c.534G>C synonymous_variant 1.0
rpoA 3877983 c.525C>G synonymous_variant 1.0
rpoA 3877986 c.522G>C synonymous_variant 1.0
rpoA 3877989 c.519A>G synonymous_variant 1.0
rpoA 3878001 c.507A>G synonymous_variant 1.0
rpoA 3878013 c.495T>C synonymous_variant 1.0
rpoA 3878019 c.489A>G synonymous_variant 1.0
clpC1 4039442 c.1263A>C synonymous_variant 1.0
clpC1 4039448 c.1257A>G synonymous_variant 1.0
clpC1 4039454 c.1251A>G synonymous_variant 1.0
clpC1 4039463 c.1242C>G synonymous_variant 1.0
clpC1 4039466 c.1239T>C synonymous_variant 1.0
clpC1 4039469 c.1236T>C synonymous_variant 1.0
clpC1 4039472 c.1233G>C synonymous_variant 1.0
clpC1 4039481 p.Ala408Ser missense_variant 1.0
clpC1 4039484 c.1221T>C synonymous_variant 1.0
clpC1 4039487 c.1218G>C synonymous_variant 1.0
clpC1 4039517 c.1188C>G synonymous_variant 1.0
clpC1 4039526 c.1179G>C synonymous_variant 1.0
clpC1 4039610 c.1095G>C synonymous_variant 1.0
clpC1 4039616 c.1089G>C synonymous_variant 1.0
clpC1 4039622 c.1083C>T synonymous_variant 1.0
clpC1 4039647 p.Glu353Pro missense_variant 1.0
clpC1 4039651 p.Val352Leu missense_variant 1.0
clpC1 4039654 p.Thr351Ser missense_variant 1.0
clpC1 4039661 p.Gly348Ala missense_variant 1.0
clpC1 4039664 c.1041G>C synonymous_variant 1.0
clpC1 4039670 p.Val345Ile missense_variant 1.0
clpC1 4039682 c.1023C>T synonymous_variant 1.0
clpC1 4039694 c.1011G>C synonymous_variant 1.0
clpC1 4039697 c.1008C>G synonymous_variant 1.0
clpC1 4040024 c.681A>G synonymous_variant 1.0
clpC1 4040036 c.669C>G synonymous_variant 1.0
clpC1 4040057 c.648C>T synonymous_variant 1.0
clpC1 4040063 c.642G>C synonymous_variant 1.0
clpC1 4040081 c.624C>G synonymous_variant 1.0
clpC1 4040084 c.621C>G synonymous_variant 1.0
clpC1 4040087 c.618G>C synonymous_variant 1.0
clpC1 4040090 c.615T>C synonymous_variant 1.0
clpC1 4040093 c.612C>G synonymous_variant 1.0
clpC1 4040117 c.588A>G synonymous_variant 1.0
clpC1 4040129 c.576C>G synonymous_variant 1.0
clpC1 4040144 c.561G>C synonymous_variant 1.0
clpC1 4040147 c.558A>G synonymous_variant 1.0