EBG00000313339 - n.2039T>C


Drug resistance types
174 Sensitive 27 RR-TB 16 HR-TB 43 MDR-TB 20 Pre-XDR-TB 1 XDR-TB 89 Other
lineage Counts
lineage Count
lineage4.1.2 8
lineage4.9 105
lineage1.1.1 1
lineage2.2.1 50
lineage3;lineage4 1
lineage2.2.1.1 1
lineage4.2.2.2 4
lineage3.1.2.1 3
lineage6.1.2 1
lineage2.2.2 11
lineage3 15
lineage4.4.1.2 1
lineage4.3.4.1 2
lineage4.4.2 2
La1.8.1 1
lineage1.2.2.2 4
lineage4.8 20
lineage4.3.3 11
lineage4.3.1.1 1
lineage3.1.1;lineage4.3.2.1 1
lineage3.1.1;lineage4.9 1
La1.2.BCG;lineage4.9 4
lineage3.1.1 8
lineage4.3.4.2.1 5
lineage2.2.2;lineage4.9 1
lineage1.1.2;lineage4.3.4.1 1
lineage4.4.1.1 9
lineage4.3.4.1;lineage4.9 3
lineage4.4.1.1.1 3
lineage4.1.2.1 10
lineage4.3.4.2 3
lineage4.1.1.1 9
lineage4.1.1 1
La1.7.1 2
lineage5.1.4 1
lineage4.2.1.1;lineage4.3.3 1
lineage4.1.1.3.1 2
lineage4.1.1.3 6
lineage4.2.1 5
La1.2.BCG 2
lineage5.1.1 1
lineage1.1.2 4
lineage1.1.3.1 2
lineage4.2.2 2
lineage4.4.1.1;lineage4.6.1.2 1
lineage3.1.2.1;lineage4.9 1
lineage4.5 3
La3;M.canetti;lineage2.1;lineage4.9 1
lineage4.8.1 3
lineage4.1.1.3.1;lineage4.9 1
La2 1
lineage4.9.1 2
lineage5.1 1
lineage2.2.1.2 1
lineage1.2.2.1 1
lineage4.3.2.1 4
lineage1.2.1.1 2
lineage4.6.2.2 3
lineage4 3
2
lineage4.6 1
lineage6.1.3 1
lineage4.1.3 1
lineage4.1.1.1;lineage4.9 1
lineage1.2.1.2 1
lineage4.1.2.1.1 1
lineage4.8.2;lineage4.9 1
lineage3.1.2.2 1
lineage4.3.2.1;lineage4.9 1
lineage2.2.1;lineage4.9 1
lineage4.8.2 1
spoligotype Counts
spoligotype Count
None 370
Geographic prevalence
Country level data for this variant is available for 5 isolates.
Statisctical support
Not enough data to calculate support.
Samples
ID Drug resistance Lineage Country iso2
SRR11342682 Other lineage4.1.2 None
ERR867574 Other lineage4.9 None
ERR718268 Sensitive lineage1.1.1 None
SRR2101312 MDR-TB lineage2.2.1 None
SRR3675230 Other lineage3;lineage4 None
SRR10315579 Other lineage2.2.1.1 None
SRR18002976 Other lineage2.2.1 None
ERR6397161 Other lineage4.2.2.2 None
SRR1062859 Sensitive lineage2.2.1 None
SRR7443750 Sensitive lineage4.9 None
SRR7443724 Sensitive lineage4.9 None
SRR7069800 Other lineage3.1.2.1 None
SRR19304094 Other lineage6.1.2 None
ERR1873549 Pre-XDR-TB lineage2.2.2 None
SRR7443723 Sensitive lineage4.9 None
SRR3725585 Sensitive lineage4.9 None
SRR18213736 Other lineage3 None
ERR736822 Sensitive lineage4.4.1.2 None
SRR11342660 MDR-TB lineage2.2.1 None
ERR867554 Other lineage4.3.4.1 None
SRR5341317 Pre-XDR-TB lineage3 None
SRR16156188 Sensitive lineage4.9 None
SRR18003013 Pre-XDR-TB lineage4.4.2 None
ERR1815548 Other La1.8.1 None
SRR7443742 Sensitive lineage4.9 None
ERR10796591 Other lineage4.9 None
SRR9971223 Other lineage2.2.1 None
SRR7443751 Sensitive lineage4.9 None
SRR7443752 Sensitive lineage4.9 None
SRR7443790 Sensitive lineage4.9 None
SRR7443722 Sensitive lineage4.9 None
ERR736820 MDR-TB lineage1.2.2.2 None
ERR4822150 Other lineage4.8 gb
SRR6044841 Other lineage4.9 None
SRR14801652 HR-TB lineage4.3.3 None
SRR7070195 Sensitive lineage3.1.2.1 None
ERR10796596 Other lineage4.9 None
SRR6046616 Other lineage4.3.1.1 None
ERR245795 Sensitive lineage3.1.1;lineage4.3.2.1 None
ERR171142 Other lineage3.1.1;lineage4.9 None
ERR560441 Sensitive La1.2.BCG;lineage4.9 None
SRR11342646 HR-TB lineage3 None
SRR6045516 Other lineage3.1.1 None
ERR037501 Sensitive lineage4.3.4.2.1 None
SRR7443726 Sensitive lineage4.9 None
SRR11342664 MDR-TB lineage2.2.2 None
SRR124452 Sensitive lineage2.2.2;lineage4.9 None
SRR15368914 MDR-TB lineage2.2.1 None
ERR978767 RR-TB lineage4.8 None
SRR124453 HR-TB lineage2.2.2 None
SRR7504775 Sensitive lineage4.9 None
SRR7443747 Sensitive lineage4.9 None
ERR036233 Sensitive lineage1.1.2;lineage4.3.4.1 None
ERR2446154 Sensitive lineage4.4.1.1 nl
SRR7069518 Other lineage4.8 None
ERR10796558 Sensitive lineage4.3.4.1;lineage4.9 None
ERR560440 Sensitive La1.2.BCG;lineage4.9 None
SRR11342638 MDR-TB lineage4.4.1.1.1 None
ERR867538 Other lineage4.2.2.2 None
ERR10796636 Other lineage4.1.2.1 None
SRR2101774 Sensitive lineage2.2.1 None
SRR6044904 Other lineage3 None
SRR7444102 Sensitive lineage4.9 None
ERR4820484 Sensitive lineage4.8 None
SRR19303820 RR-TB lineage4.8 None
ERR3275615 Sensitive lineage4.4.1.1 nl
SRR7069027 MDR-TB lineage4.3.4.2 None
SRR1181319 Sensitive lineage2.2.1 None
SRR15276982 XDR-TB lineage3 None
SRR3725589 Sensitive lineage4.9 None
SRR6982011 Sensitive lineage4.1.1.1 None
SRR7504773 Sensitive lineage4.9 None
ERR867571 Other lineage4.9 None
SRR18002908 Other lineage2.2.1 None
SRR6982053 Sensitive lineage4.3.4.1;lineage4.9 None
SRR6982014 Sensitive lineage4.1.1 None
SRR124451 Sensitive lineage2.2.2 None
ERR867525 Pre-XDR-TB lineage2.2.1 None
SRR18002998 Pre-XDR-TB lineage2.2.2 None
SRR1735598 RR-TB lineage4.9 None
SAMN02585942 Sensitive lineage4.1.2 None
ERR11465581 MDR-TB lineage4.4.1.1 None
SRR7443732 Sensitive lineage4.9 None
ERR245740 Sensitive lineage4.1.2 None
ERR867522 Pre-XDR-TB lineage2.2.1 None
SRR7504788 Sensitive lineage4.9 None
SRR6982075 Sensitive lineage4.9 None
ERR502489 Sensitive lineage4.9 None
SRR7443740 Sensitive lineage4.9 None
ERR502492 Sensitive lineage4.9 None
SRR1792247 Other La1.7.1 None
ERR1140778 Sensitive lineage5.1.4 None
SRR7504782 Sensitive lineage4.9 None
ERR867542 HR-TB lineage4.2.1.1;lineage4.3.3 None
SRR7070223 HR-TB lineage3 None
SRR18002891 MDR-TB lineage2.2.1 None
SRR11871419 Pre-XDR-TB lineage2.2.1 None
SRR5007167 RR-TB lineage4.1.1.3.1 None
ERR736805 Sensitive lineage2.2.1 None
SRR18003004 Pre-XDR-TB lineage2.2.2 None
SRR6856119 Sensitive lineage2.2.1 None
ERR560442 Sensitive La1.2.BCG;lineage4.9 None
SRR7504783 Sensitive lineage4.9 None
ERR779662 Sensitive lineage3.1.1 None
SRR11342669 Other lineage4.8 None
SRR7504786 Sensitive lineage4.9 None
ERR10796564 Other lineage4.3.3 None
SRR6982465 Sensitive lineage4.3.4.2 None
SRR6982239 Sensitive lineage4.1.1.3 None
SRR2101689 Sensitive lineage4.3.4.1 None
SRR6046117 Other lineage4.9 None
ERR10796633 Other lineage4.3.4.2 None
SRR1173385 Sensitive lineage4.9 None
ERR926168 Sensitive lineage4.9 None
SRR6982558 Sensitive lineage4.3.4.2.1 None
SRR3725591 Sensitive lineage4.9 None
ERR867524 Pre-XDR-TB lineage4.2.1 None
SRR7086716 Other La1.2.BCG None
SRR1735596 RR-TB lineage4.9 None
ERR245764 HR-TB lineage3.1.1 None
ERR1140774 Sensitive lineage5.1.1 None
SRR6981941 Sensitive lineage4.3.4.2.1 None
ERR4596904 MDR-TB lineage3.1.1 None
SRR1180237 Sensitive lineage4.1.2 None
ERR2653138 MDR-TB lineage4.1.2.1 None
ERR978765 RR-TB lineage4.8 None
ERR1140785 Sensitive lineage1.1.2 None
SRR6982076 Sensitive lineage4.9 None
ERR4819864 RR-TB lineage1.1.3.1 None
SRR7444103 Sensitive lineage4.9 None
SRR18002994 MDR-TB lineage4.2.2 None
SRR7504772 Sensitive lineage4.9 None
SRR11342636 MDR-TB lineage4.3.3 None
SRR5341460 Other lineage3 None
ERR5758436 Other lineage2.2.2 None
SRR6789621 Other lineage4.9 None
ERR4821811 Sensitive lineage4.9 None
ERR10796565 Other lineage4.9 None
SRR7086711 Other La1.2.BCG None
SRR18002881 Pre-XDR-TB lineage2.2.1 None
SRR1140691 HR-TB lineage4.4.1.1;lineage4.6.1.2 None
ERR323068 Sensitive lineage4.9 None
SRR7504781 Sensitive lineage4.9 None
SRR11342684 HR-TB lineage4.4.1.1 None
ERR2027290 Other lineage3.1.2.1;lineage4.9 None
ERR11465830 Sensitive lineage4.9 None
SRR18002903 Pre-XDR-TB lineage2.2.1 None
SRR11342653 MDR-TB lineage2.2.1 None
SRR18003007 MDR-TB lineage4.5 None
SRR7070329 Other lineage3 None
ERR9896153 RR-TB lineage4.4.1.1 None
ERR323036 MDR-TB La3;M.canetti;lineage2.1;lineage4.9 None
ERR867523 Pre-XDR-TB lineage2.2.1 None
SRR11342693 MDR-TB lineage4.8.1 None
ERR133816 MDR-TB lineage2.2.1 None
SRR18002930 MDR-TB lineage2.2.1 None
ERR11465490 Sensitive lineage4.1.2.1 None
ERR10796578 Other lineage2.2.1 None
SRR6982414 Sensitive lineage4.9 None
SRR7069137 Other lineage4.8 None
ERR867544 Other lineage4.9 None
ERR9117788 Other lineage3 None
SRR7443727 Sensitive lineage4.9 None
SRR7131121 Other lineage4.3.3 None
SRR6982328 Other lineage3.1.1 None
ERR502484 Sensitive lineage4.9 None
SRR6982037 Sensitive lineage4.1.1.1 None
SRR5007161 RR-TB lineage4.1.1.3.1;lineage4.9 None
ERR4596944 MDR-TB lineage3.1.1 None
DRR120409 HR-TB La2 None
ERR245810 Sensitive lineage4.9.1 None
ERR1140792 HR-TB lineage5.1 None
SRR10315556 Sensitive lineage2.2.1 None
SRR7068888 Sensitive lineage2.2.1.2 None
SRR3675509 Other lineage4.9 None
ERR11465829 Sensitive lineage4.9 None
ERR245662 Sensitive lineage1.2.2.1 None
SRR21737226 Sensitive lineage4.5 None
SRR6982138 Sensitive lineage4.1.1.3 None
SRR18003024 RR-TB lineage2.2.1 None
ERR6052110 Pre-XDR-TB lineage2.2.2 None
SRR7443737 Sensitive lineage4.9 None
SRR6981962 Sensitive lineage4.3.2.1 None
ERR10796598 Other lineage4.9 None
SRR11342658 RR-TB lineage4.1.2 None
SRR18003023 Other lineage2.2.1 None
SRR18003042 Other lineage2.2.1 None
SRR10315693 RR-TB lineage4.1.2 None
SRR6045424 Other lineage1.1.2 None
SRR3675261 Other lineage1.2.1.1 None
SRR11342676 HR-TB lineage4.6.2.2 None
SRR2101681 Sensitive lineage4.8 None
ERR10796580 Other lineage4 None
SRR1011488 Sensitive lineage2.2.1 None
SRR7443756 Sensitive lineage4.9 None
ERR502486 Sensitive lineage4.9 None
SRR7443730 Sensitive lineage4.9 None
SRR3725597 Sensitive lineage4.9 None
SRR5007165 Other lineage3 None
ERR323048 Sensitive lineage4.9 None
ERR473303 Sensitive lineage4.9 None
SRR7443735 Sensitive lineage4.9 None
SRR11342655 MDR-TB lineage2.2.1 None
SRR7443769 Sensitive lineage4 None
SRR7444084 Sensitive lineage4.9 None
SRR11342644 MDR-TB lineage4.4.1.1.1 None
SRR6982104 Sensitive lineage2.2.1 None
SRR7444098 Sensitive lineage4.9 None
SRR18002987 Other lineage2.2.1 None
SRR7504776 Sensitive lineage4.9 None
SRR7443748 Sensitive lineage4.9 None
SRR6982418 Sensitive lineage4.1.1.3 None
SRR6982196 Sensitive None
SRR6982099 Sensitive lineage4.3.4.2.1 None
SRR6982213 Sensitive lineage4.3.2.1 None
SRR7443794 Sensitive lineage4.9 None
SRR6046766 Other lineage3.1.1 None
SRR18003002 MDR-TB lineage2.2.1 None
SRR11342662 MDR-TB lineage4.8.1 None
ERR11465776 Sensitive lineage4.1.1.3 None
SRR10315464 MDR-TB lineage4.4.1.1 None
SRR6982385 Sensitive lineage4.1.2 None
SRR7443741 Sensitive lineage4.9 None
ERR6052085 Pre-XDR-TB lineage2.2.2 None
SRR6824624 Sensitive lineage2.2.1 None
SRR6044936 Other lineage4.6 None
ERR2027209 MDR-TB lineage1.2.1.1 None
SRR11342649 MDR-TB lineage4.3.3 None
SRR1181136 Sensitive lineage2.2.1 None
SRR7070134 Other lineage3.1.1 None
ERR867527 Pre-XDR-TB lineage2.2.1 None
SRR3725588 Sensitive lineage4.9 None
SRR18002941 RR-TB lineage2.2.1 None
SRR6982078 Sensitive lineage4.9 None
ERR4816800 Other lineage4.8 gb
SRR11349191 Pre-XDR-TB lineage4.3.3 None
SRR3725596 Sensitive lineage4.9 None
SRR6982195 Sensitive lineage4.4.1.1 None
SRR7443725 Sensitive lineage4.9 None
SRR9971372 MDR-TB lineage4.1.1.1 None
SRR3675565 Other lineage4 None
SRR7444072 Sensitive lineage4.9 None
DRR184903 Sensitive lineage2.2.2 None
SRR18002933 Other lineage2.2.1 None
SRR7443767 Sensitive lineage4.9 None
SRR7443753 Sensitive lineage4.9 None
SAMEA3501073 RR-TB lineage4.8 None
ERR3806588 Other lineage6.1.3 None
SRR6982471 Sensitive lineage2.2.1 None
SRR11342642 MDR-TB lineage4.1.1.1 None
ERR2027257 Other lineage4.1.2.1 None
SRR18003047 MDR-TB lineage2.2.1 None
SRR6045267 RR-TB lineage4.8 None
SRR6981912 Sensitive lineage4.3.2.1 None
SRR3725590 Sensitive lineage4.9 None
ERR867573 Other lineage4.9 None
SRR6046343 Other lineage2.2.1 None
ERR4818851 RR-TB lineage4.4.1.1 None
SRR11342671 RR-TB lineage4.1.3 None
DRR188816 Other lineage4.2.2 None
SRR11342668 Pre-XDR-TB lineage4.8.1 None
SRR6855718 Other lineage4.8 None
SRR11342686 MDR-TB lineage4.8 None
SRR11342651 MDR-TB lineage4.1.1.1 None
ERR4769525 Sensitive lineage4.9 None
SRR12199461 Sensitive lineage1.1.3.1 None
ERR10796563 Other lineage4.3.3 None
SRR6982297 Sensitive lineage4.1.1.1;lineage4.9 None
SRR3105736 Sensitive lineage1.2.2.2 None
ERR036191 Sensitive lineage4.9.1 None
ERR867526 MDR-TB lineage2.2.1 None
SRR3725595 Sensitive lineage4.9 None
ERR2179737 HR-TB lineage4.2.1 None
ERR1140766 Sensitive lineage1.1.2 None
SRR7443736 Sensitive lineage4.9 None
ERR10796572 Other lineage4.3.4.1;lineage4.9 None
ERR1140772 Sensitive lineage1.2.1.2 None
ERR245846 Sensitive lineage2.2.1 None
SRR18002981 Other lineage2.2.1 None
ERR867572 Other lineage4.9 None
SRR6045125 Other lineage1.1.2 None
SRR6856032 Sensitive lineage2.2.1 None
SRR5818586 RR-TB lineage4.2.2.2 None
ERR760877 MDR-TB lineage4.1.2.1.1 None
SRR1181085 Sensitive lineage4.1.2 None
ERR867541 MDR-TB lineage4.2.1 None
SRR11342643 MDR-TB lineage4.1.1.1 None
ERR926173 Sensitive lineage4.9 None
SRR7443761 Sensitive lineage4.9 None
SRR18002967 HR-TB lineage2.2.1 None
ERR3276170 Other lineage4.1.2.1 nl
SRR1184308 RR-TB lineage4.9 None
ERR4818646 Sensitive lineage4.1.2.1 None
ERR10796577 Other lineage4.9 None
ERR978766 RR-TB lineage4.8 None
ERR867567 RR-TB lineage3 None
ERR036242 Sensitive lineage4.3.4.2.1 None
ERR502498 Sensitive lineage4.9 None
ERR978767_ERR978765_ERR978766 RR-TB lineage4.8 None
ERR108476 Sensitive lineage4.1.2.1 None
SRR14801325 Pre-XDR-TB lineage4.2.1 None
SRR11342685 HR-TB lineage4.4.1.1 None
SRR5007168 Other lineage4.8.2;lineage4.9 None
ERR4811101 Other lineage4.4.2 None
SRR11342696 MDR-TB lineage4.4.1.1.1 None
ERR072033 Sensitive lineage3.1.2.2 None
ERR6397183 Sensitive lineage3 None
SAMN02350446 Sensitive lineage2.2.1 None
SRR11349153 RR-TB lineage4.1.1.1 None
SRR7069097 Other lineage3.1.2.1 None
ERR3324325 MDR-TB lineage4.6.2.2 None
SRR11342647 MDR-TB lineage4.1.1.3 None
ERR502485 Sensitive lineage4.9 None
SRR6045957 Other lineage4.9 None
SRR7443738 Sensitive lineage4.9 None
SRR6982035 Sensitive lineage4.3.2.1;lineage4.9 None
ERR560443 Sensitive La1.2.BCG;lineage4.9 None
SRR7504779 Sensitive lineage4.9 None
ERR867521 MDR-TB lineage2.2.1 None
SRR7443743 Sensitive lineage4.9 None
SRR2101617 Sensitive lineage4.1.1.1 None
SRR18002947 MDR-TB lineage2.2.1 None
SRR6982106 Sensitive lineage4.8 None
SRR7443731 Sensitive lineage4.9 None
SRR7443739 Sensitive lineage4.9 None
SRR7443768 Sensitive lineage4.9 None
SRR7443791 Sensitive lineage4.9 None
SRR1173848 Pre-XDR-TB lineage2.2.2 None
SRR5007193 RR-TB lineage4.1.1.3.1 None
SRR6044925 Sensitive lineage4.9 None
ERR144568 Sensitive None
ERR502483 Sensitive lineage4.9 None
SRR7444071 Sensitive lineage4.9 None
SRR22424765 HR-TB lineage4.8 None
SRR7070369 Other lineage1.2.2.2 None
ERR502493 Sensitive lineage4.9 None
SRR10315558 RR-TB lineage2.2.1 None
ERR6397155 HR-TB lineage3 None
SRR22048536 Other lineage4.3.3 None
SRR6982178 Sensitive lineage2.2.1 None
SRR1792232 Other La1.7.1 None
SRR18002961 Other lineage2.2.1 None
SRR6981922 Sensitive lineage4.3.2.1 None
SRR7070602 Other lineage4.2.1 None
SRR7443749 Sensitive lineage4.9 None
SRR7444074 Sensitive lineage4.9 None
ERR9285816 Sensitive lineage4.3.3 None
SRR7443757 Sensitive lineage4.9 None
SRR7069319 Other lineage4.5 None
ERR502490 Sensitive lineage4.9 None
ERR2660499 Sensitive lineage4.1.1.3 None
SRR7070080 Pre-XDR-TB lineage3 None
ERR10796628 Other lineage4.3.3 None
ERR9117827 Other lineage1.2.2.2 None
SRR5341430 Other lineage3 None
ERR10796626 Other lineage4.1.2.1 None
SRR3675552 Other lineage4.9 None
SRR11342687 RR-TB lineage4.2.2.2 None
SRR7443733 Sensitive lineage4.9 None
SRR6982398 Sensitive lineage2.2.1;lineage4.9 None
SRR7443734 Sensitive lineage4.9 None
SRR9971195 MDR-TB lineage4.3.3 None
ERR867575 Other lineage4.9 None
SRR4034393 MDR-TB lineage4.1.2.1 None
ERR108424 Sensitive lineage4.8 None
ERR1465744 Sensitive lineage4.1.2.1 None
ERR2229234 Sensitive lineage4.8 None
ERR502472 Sensitive lineage4.6.2.2 None
ERR10796620 Other lineage4.1.1.1 None
SRR5007169 RR-TB lineage4.8.2 None