Run ID: ERR1815548
Sample name:
Date: 31-03-2023 15:15:23
Number of reads: 5360585
Percentage reads mapped: 56.37
Strain: La1.8.1
Drug-resistance: Other
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
La1 | M.bovis | None | None | 1.0 |
La1.8 | M.bovis | None | None | 1.0 |
La1.8.1 | M.bovis | None | None | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|---|---|---|---|---|
pncA | 2289073 | p.His57Asp | missense_variant | 1.0 | pyrazinamide |
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrB | 5752 | c.513G>A | synonymous_variant | 1.0 |
gyrA | 6406 | c.-896C>T | upstream_gene_variant | 1.0 |
gyrB | 6446 | p.Ala403Ser | missense_variant | 1.0 |
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
gyrA | 7585 | p.Ser95Thr | missense_variant | 1.0 |
gyrA | 8285 | c.984C>T | synonymous_variant | 1.0 |
gyrA | 9143 | c.1842T>C | synonymous_variant | 1.0 |
gyrA | 9217 | p.Asp639Ala | missense_variant | 1.0 |
gyrA | 9304 | p.Gly668Asp | missense_variant | 1.0 |
fgd1 | 491742 | c.960T>C | synonymous_variant | 1.0 |
mshA | 575663 | p.Gly106Arg | missense_variant | 1.0 |
rpoB | 762138 | c.2332C>T | synonymous_variant | 1.0 |
rpoC | 763031 | c.-339T>C | upstream_gene_variant | 1.0 |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 1.0 |
mmpL5 | 776100 | p.Thr794Ile | missense_variant | 1.0 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
fbiC | 1302899 | c.-32A>G | upstream_gene_variant | 1.0 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
rrs | 1472122 | n.277G>A | non_coding_transcript_exon_variant | 0.25 |
rrs | 1472127 | n.282C>T | non_coding_transcript_exon_variant | 0.28 |
rrs | 1472129 | n.284G>C | non_coding_transcript_exon_variant | 0.32 |
rrs | 1472137 | n.292G>A | non_coding_transcript_exon_variant | 0.47 |
rrs | 1472150 | n.305T>A | non_coding_transcript_exon_variant | 0.53 |
rrs | 1472151 | n.306C>T | non_coding_transcript_exon_variant | 0.53 |
rrs | 1472172 | n.327T>C | non_coding_transcript_exon_variant | 0.54 |
rrs | 1472203 | n.358G>A | non_coding_transcript_exon_variant | 0.41 |
rrs | 1472210 | n.365A>C | non_coding_transcript_exon_variant | 0.28 |
rrs | 1472213 | n.368G>C | non_coding_transcript_exon_variant | 0.26 |
rrs | 1472215 | n.370A>G | non_coding_transcript_exon_variant | 0.25 |
rrs | 1472222 | n.377G>A | non_coding_transcript_exon_variant | 0.23 |
rrs | 1472229 | n.384C>T | non_coding_transcript_exon_variant | 0.13 |
rrs | 1472379 | n.534T>G | non_coding_transcript_exon_variant | 0.21 |
rrs | 1472400 | n.555C>T | non_coding_transcript_exon_variant | 0.17 |
rrs | 1472557 | n.712G>A | non_coding_transcript_exon_variant | 0.51 |
rrs | 1472570 | n.725G>A | non_coding_transcript_exon_variant | 0.65 |
rrs | 1472571 | n.726G>C | non_coding_transcript_exon_variant | 0.65 |
rrs | 1472579 | n.734G>T | non_coding_transcript_exon_variant | 0.68 |
rrs | 1472581 | n.736A>T | non_coding_transcript_exon_variant | 0.69 |
rrs | 1472598 | n.753A>T | non_coding_transcript_exon_variant | 0.72 |
rrs | 1472612 | n.767G>T | non_coding_transcript_exon_variant | 0.72 |
rrs | 1472655 | n.810G>A | non_coding_transcript_exon_variant | 0.36 |
rrs | 1472658 | n.813G>A | non_coding_transcript_exon_variant | 0.29 |
rrs | 1472661 | n.816A>G | non_coding_transcript_exon_variant | 0.28 |
rrs | 1472700 | n.855C>T | non_coding_transcript_exon_variant | 0.16 |
rrs | 1472713 | n.868T>C | non_coding_transcript_exon_variant | 0.49 |
rrs | 1472716 | n.871C>T | non_coding_transcript_exon_variant | 0.53 |
rrs | 1472744 | n.899A>G | non_coding_transcript_exon_variant | 0.75 |
rrs | 1472754 | n.909G>A | non_coding_transcript_exon_variant | 0.76 |
rrs | 1472781 | n.936C>T | non_coding_transcript_exon_variant | 0.76 |
rrs | 1472793 | n.948A>T | non_coding_transcript_exon_variant | 0.71 |
rrs | 1472803 | n.958T>A | non_coding_transcript_exon_variant | 0.62 |
rrs | 1472806 | n.961A>T | non_coding_transcript_exon_variant | 0.58 |
rrs | 1472824 | n.979T>A | non_coding_transcript_exon_variant | 0.22 |
rrs | 1472827 | n.982G>T | non_coding_transcript_exon_variant | 0.11 |
rrs | 1472828 | n.983T>C | non_coding_transcript_exon_variant | 0.11 |
rrs | 1472936 | n.1091C>T | non_coding_transcript_exon_variant | 0.15 |
rrs | 1473009 | n.1164T>C | non_coding_transcript_exon_variant | 0.14 |
rrs | 1473035 | n.1190G>A | non_coding_transcript_exon_variant | 0.28 |
rrs | 1473053 | n.1208T>A | non_coding_transcript_exon_variant | 0.28 |
rrs | 1473056 | n.1211A>T | non_coding_transcript_exon_variant | 0.27 |
rrs | 1473062 | n.1217T>A | non_coding_transcript_exon_variant | 0.27 |
rrs | 1473068 | n.1223A>G | non_coding_transcript_exon_variant | 0.26 |
rrs | 1473080 | n.1235C>A | non_coding_transcript_exon_variant | 0.17 |
rrs | 1473081 | n.1236C>T | non_coding_transcript_exon_variant | 0.16 |
rrs | 1473084 | n.1239T>A | non_coding_transcript_exon_variant | 0.16 |
rrs | 1473205 | n.1360T>C | non_coding_transcript_exon_variant | 0.1 |
rrl | 1474823 | n.1166C>G | non_coding_transcript_exon_variant | 0.15 |
rrl | 1474827 | n.1170C>T | non_coding_transcript_exon_variant | 0.15 |
rrl | 1474830 | n.1173A>T | non_coding_transcript_exon_variant | 0.15 |
rrl | 1474831 | n.1174A>T | non_coding_transcript_exon_variant | 0.16 |
rrl | 1474844 | n.1187G>T | non_coding_transcript_exon_variant | 0.25 |
rrl | 1474866 | n.1209C>A | non_coding_transcript_exon_variant | 0.33 |
rrl | 1474869 | n.1212G>T | non_coding_transcript_exon_variant | 0.34 |
rrl | 1474896 | n.1239A>G | non_coding_transcript_exon_variant | 0.29 |
rrl | 1474902 | n.1245T>C | non_coding_transcript_exon_variant | 0.26 |
rrl | 1474904 | n.1247G>C | non_coding_transcript_exon_variant | 0.26 |
rrl | 1474913 | n.1256T>A | non_coding_transcript_exon_variant | 0.26 |
rrl | 1474920 | n.1263G>T | non_coding_transcript_exon_variant | 0.17 |
rrl | 1475363 | n.1706C>A | non_coding_transcript_exon_variant | 0.18 |
rrl | 1475673 | n.2016T>C | non_coding_transcript_exon_variant | 0.11 |
rrl | 1475687 | n.2030C>T | non_coding_transcript_exon_variant | 0.13 |
rrl | 1475688 | n.2031G>C | non_coding_transcript_exon_variant | 0.12 |
rrl | 1475696 | n.2039T>C | non_coding_transcript_exon_variant | 0.12 |
rrl | 1475703 | n.2046A>G | non_coding_transcript_exon_variant | 0.12 |
rrl | 1475713 | n.2056C>G | non_coding_transcript_exon_variant | 0.12 |
rrl | 1475722 | n.2065G>A | non_coding_transcript_exon_variant | 0.13 |
rrl | 1475783 | n.2126T>G | non_coding_transcript_exon_variant | 0.14 |
rrl | 1475803 | n.2146T>C | non_coding_transcript_exon_variant | 0.35 |
rrl | 1475804 | n.2147G>C | non_coding_transcript_exon_variant | 0.35 |
rrl | 1475816 | n.2159C>G | non_coding_transcript_exon_variant | 0.36 |
rrl | 1475817 | n.2160A>G | non_coding_transcript_exon_variant | 0.36 |
rrl | 1475858 | n.2201T>C | non_coding_transcript_exon_variant | 0.33 |
rrl | 1475866 | n.2209T>C | non_coding_transcript_exon_variant | 0.2 |
rrl | 1476225 | n.2568T>G | non_coding_transcript_exon_variant | 0.18 |
rrl | 1476229 | n.2572C>T | non_coding_transcript_exon_variant | 0.19 |
rrl | 1476251 | n.2594T>C | non_coding_transcript_exon_variant | 0.21 |
rrl | 1476252 | n.2595T>A | non_coding_transcript_exon_variant | 0.21 |
rrl | 1476260 | n.2603A>G | non_coding_transcript_exon_variant | 0.22 |
rrl | 1476280 | n.2623A>C | non_coding_transcript_exon_variant | 0.2 |
rrl | 1476332 | n.2675G>C | non_coding_transcript_exon_variant | 0.54 |
rrl | 1476353 | n.2696G>T | non_coding_transcript_exon_variant | 0.62 |
rrl | 1476358 | n.2701T>C | non_coding_transcript_exon_variant | 0.62 |
rrl | 1476369 | n.2712C>T | non_coding_transcript_exon_variant | 0.68 |
rrl | 1476372 | n.2715T>C | non_coding_transcript_exon_variant | 0.7 |
rrl | 1476382 | n.2725A>G | non_coding_transcript_exon_variant | 0.74 |
rrl | 1476383 | n.2726T>A | non_coding_transcript_exon_variant | 0.73 |
rrl | 1476391 | n.2734C>T | non_coding_transcript_exon_variant | 0.74 |
rrl | 1476408 | n.2751G>A | non_coding_transcript_exon_variant | 0.77 |
rrl | 1476425 | n.2768G>T | non_coding_transcript_exon_variant | 0.79 |
rrl | 1476428 | n.2771C>T | non_coding_transcript_exon_variant | 0.8 |
rrl | 1476429 | n.2772A>C | non_coding_transcript_exon_variant | 0.81 |
rrl | 1476466 | n.2809C>T | non_coding_transcript_exon_variant | 0.8 |
rrl | 1476481 | n.2824T>C | non_coding_transcript_exon_variant | 0.7 |
rrl | 1476506 | n.2849T>C | non_coding_transcript_exon_variant | 0.44 |
rrl | 1476514 | n.2857C>T | non_coding_transcript_exon_variant | 0.18 |
rrl | 1476704 | n.3053delC | non_coding_transcript_exon_variant | 1.0 |
inhA | 1674952 | p.Pro251Ala | missense_variant | 0.15 |
rpsA | 1834859 | p.Ala440Thr | missense_variant | 1.0 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
ndh | 2103173 | c.-132delG | upstream_gene_variant | 1.0 |
katG | 2154724 | p.Arg463Leu | missense_variant | 1.0 |
katG | 2155503 | c.609C>T | synonymous_variant | 1.0 |
katG | 2156025 | c.87C>A | synonymous_variant | 1.0 |
PPE35 | 2167926 | p.Leu896Ser | missense_variant | 1.0 |
PPE35 | 2168011 | p.Ser868Arg | missense_variant | 1.0 |
PPE35 | 2168319 | p.Thr765Ile | missense_variant | 1.0 |
PPE35 | 2168814 | c.1798dupA | frameshift_variant | 1.0 |
PPE35 | 2169866 | c.747G>C | synonymous_variant | 0.2 |
Rv1979c | 2222308 | p.Asp286Gly | missense_variant | 0.99 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
kasA | 2518132 | c.18C>T | synonymous_variant | 1.0 |
eis | 2715125 | p.Thr70Ala | missense_variant | 0.99 |
thyA | 3073685 | p.Val263Ile | missense_variant | 1.0 |
thyA | 3073806 | c.666C>G | synonymous_variant | 0.34 |
ald | 3086728 | c.-92C>T | upstream_gene_variant | 1.0 |
ald | 3086788 | c.-32T>C | upstream_gene_variant | 1.0 |
ald | 3087084 | c.266delA | frameshift_variant | 1.0 |
Rv3083 | 3448783 | p.Val94Ile | missense_variant | 1.0 |
fprA | 3473996 | c.-11_-10insA | upstream_gene_variant | 1.0 |
fprA | 3474427 | p.Val141Ile | missense_variant | 1.0 |
fprA | 3475159 | p.Asn385Asp | missense_variant | 1.0 |
rpoA | 3878283 | p.Glu75Asp | missense_variant | 1.0 |
rpoA | 3878630 | c.-124delC | upstream_gene_variant | 1.0 |
clpC1 | 4038403 | c.2302T>C | synonymous_variant | 1.0 |
embC | 4240671 | p.Thr270Ile | missense_variant | 0.99 |
embA | 4242643 | c.-590C>T | upstream_gene_variant | 1.0 |
embC | 4242822 | p.Val987Gly | missense_variant | 0.17 |
embA | 4242970 | c.-263C>T | upstream_gene_variant | 1.0 |
embA | 4244220 | c.988C>T | synonymous_variant | 1.0 |
embB | 4246551 | p.Asn13Ser | missense_variant | 1.0 |
embB | 4246864 | c.351C>T | synonymous_variant | 1.0 |
embB | 4247646 | p.Glu378Ala | missense_variant | 1.0 |
embB | 4248314 | p.Ala601Thr | missense_variant | 1.0 |
aftB | 4267858 | p.Ile327Val | missense_variant | 1.0 |
aftB | 4269351 | c.-515C>T | upstream_gene_variant | 1.0 |
ubiA | 4269387 | p.Glu149Asp | missense_variant | 1.0 |
aftB | 4269606 | c.-770T>C | upstream_gene_variant | 1.0 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |
gid | 4407588 | c.615A>G | synonymous_variant | 1.0 |