EBG00000313339 - n.3053delC
Drug resistance types
42 Sensitive
1 RR-TB
13 HR-TB
34 MDR-TB
5 Pre-XDR-TB
0 XDR-TB
41 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage1.1.2 | 13 |
| lineage4.3.3 | 2 |
| lineage4.4 | 1 |
| 5 | |
| La1.7.1 | 7 |
| lineage1.2.2.2 | 7 |
| lineage4.4.1.1 | 3 |
| lineage2.2.1.1 | 6 |
| lineage2.2.1 | 13 |
| lineage3 | 10 |
| lineage4.4.2 | 1 |
| lineage4.7 | 1 |
| lineage4 | 4 |
| lineage4.1.1.1 | 1 |
| La1.8.1 | 18 |
| lineage4.8 | 5 |
| lineage4.9 | 2 |
| lineage4.5 | 3 |
| lineage4.8.1 | 5 |
| lineage4.3.2 | 2 |
| La1.4 | 2 |
| lineage1.1.3.1 | 2 |
| lineage4.1.2.1 | 3 |
| lineage6.3.1;lineage4.1.3 | 2 |
| lineage6 | 1 |
| lineage4.1.3 | 4 |
| lineage4.9;lineage4.8.1 | 1 |
| lineage4.1.1 | 5 |
| lineage4.1.1.3 | 2 |
| La1.3 | 1 |
| lineage4.6.5 | 1 |
| lineage4.2.1.1 | 1 |
| lineage1.1.3.2 | 1 |
| lineage3.1.1 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 136 |
Geographic prevalence
Country level data for this variant is available for 23 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR1180255 | MDR-TB | lineage1.1.2 | None | SRR1180454 | MDR-TB | lineage1.1.2 | None | SRR1180296 | MDR-TB | lineage1.1.2 | None | SRR12830416 | MDR-TB | lineage4.3.3 | None | SRR1183039 | MDR-TB | lineage1.1.2 | None | SRR12142391 | Sensitive | lineage4.4 | None | SRR12199464 | Sensitive | None | SRR13199719 | Other | La1.7.1 | None | SRR13199729 | Other | La1.7.1 | None | SRR16058669 | HR-TB | lineage1.2.2.2 | None | SRR15014635 | MDR-TB | lineage1.1.2 | None | SRR14508916 | Sensitive | lineage4.4.1.1 | None | SRR15296937 | Other | La1.7.1 | None | SRR16058553 | Sensitive | lineage2.2.1.1 | None | SRR20969579 | Sensitive | lineage2.2.1 | None | SRR1792211 | Other | La1.7.1 | None | SRR18002949 | Sensitive | lineage2.2.1 | None | SRR18213738 | Other | lineage3 | None | SRR21733172 | Sensitive | lineage2.2.1.1 | None | SRR20970001 | Other | lineage4.4.2 | None | SRR25534241 | Sensitive | lineage2.2.1 | None | ERR11081068 | HR-TB | lineage3 | None | SRR23862097 | Other | lineage4.7 | None | SRR3085368 | Sensitive | lineage4 | None | ERR12544229 | HR-TB | lineage4.1.1.1 | None | SRR22249740 | Sensitive | lineage3 | None | SRR3082138 | Sensitive | lineage4 | None | ERR1815548 | Other | La1.8.1 | None | SRR6045019 | Other | La1.8.1 | gb | ERR2510607 | Pre-XDR-TB | lineage3 | None | ERR1950027 | Sensitive | lineage4.8 | None | ERR4814956 | Sensitive | lineage4.9 | None | ERR1950054 | Sensitive | lineage4 | None | ERR2229098 | Sensitive | lineage4.8 | None | ERR718560 | Sensitive | lineage4.5 | th | ERR4818042 | Other | La1.7.1 | None | ERR4818148 | Sensitive | lineage1.1.2 | None | ERR3276027 | Sensitive | lineage4.3.3 | nl | ERR4817851 | Sensitive | lineage4.9 | None | ERR4817991 | Sensitive | lineage1.1.2 | None | ERR2510804 | Other | lineage2.2.1 | None | SRR5216728 | Other | La1.8.1 | None | ERR552419 | Other | lineage4.8 | de | ERR2513943 | Sensitive | None | SRR5216856 | Other | La1.8.1 | None | SRR5216757 | Other | La1.8.1 | None | SRR5216765 | Other | La1.8.1 | None | SRR5216756 | Other | La1.8.1 | None | SRR5216792 | Other | La1.8.1 | None | SRR5216896 | Other | La1.8.1 | None | SRR5216874 | Other | La1.8.1 | None | SRR5216870 | Other | La1.8.1 | None | SRR5216951 | Other | La1.8.1 | None | SRR5216922 | Other | La1.8.1 | None | SRR5216964 | Other | La1.8.1 | None | ERR4820862 | Other | lineage2.2.1.1 | None | SRR5216968 | Other | La1.8.1 | None | SAMN02598992 | MDR-TB | lineage1.1.2 | in | ERR037550 | Sensitive | lineage4.8.1 | mw | ERR4821612 | Other | lineage2.2.1.1 | None | ERR4799239 | MDR-TB | lineage2.2.1 | in | SAMN02598987 | MDR-TB | lineage1.1.2 | in | ERR4797894 | Other | lineage3 | in | SRR6046617 | HR-TB | lineage2.2.1 | None | ERR3335766 | Pre-XDR-TB | lineage3 | pk | ERR3335795 | Pre-XDR-TB | lineage3 | pk | ERR4829281 | Sensitive | lineage4.3.2 | None | ERR2815529 | Other | La1.4 | None | ERR2516654 | MDR-TB | lineage2.2.1.1 | pe | ERR4798085 | HR-TB | lineage1.2.2.2 | in | ERR4796653 | HR-TB | lineage1.2.2.2 | in | SRR6046738 | Other | La1.8.1 | None | ERR4810677 | Sensitive | lineage4.5 | cn | ERR4810676 | Sensitive | lineage4.5 | cn | ERR2815515 | Other | La1.4 | None | ERR4799699 | HR-TB | lineage1.2.2.2 | in | SRR6650340 | Sensitive | lineage1.1.3.1 | None | SRR6785453 | HR-TB | lineage2.2.1 | None | SRR6832228 | MDR-TB | lineage2.2.1 | None | ERR4814731 | HR-TB | lineage1.2.2.2 | gb | ERR4815094 | Sensitive | lineage4.1.2.1 | gb | SRR6797474 | MDR-TB | lineage1.1.3.1 | None | SRR6982248 | Sensitive | lineage4.8.1 | None | SRR6797440 | Other | None | SRR998742 | MDR-TB | lineage6.3.1;lineage4.1.3 | None | SRR6964632 | MDR-TB | lineage3 | None | ERR5087567 | Other | La1.8.1 | None | SRR6831774 | Pre-XDR-TB | lineage2.2.1 | None | SRR7131190 | Sensitive | lineage6 | None | SRR998746 | MDR-TB | lineage4.1.3 | None | SRR7131195 | Other | lineage2.2.1 | None | SRR998741 | MDR-TB | lineage6.3.1;lineage4.1.3 | None | ERR10748524 | RR-TB | lineage4.4.1.1 | None | SRR998744 | MDR-TB | lineage4.1.3 | None | SRR7131255 | Sensitive | lineage4.3.2 | None | ERR11466377 | Sensitive | lineage4.8.1 | None | SRR998745 | MDR-TB | lineage4.1.3 | None | SRR998747 | MDR-TB | lineage4.1.3 | None | ERR12268401 | Sensitive | lineage4.8 | None | ERR11488646 | HR-TB | lineage4.8.1 | None | ERR11465954 | Sensitive | lineage4.9;lineage4.8.1 | None | ERR10969116 | HR-TB | lineage4.1.1 | None | ERR11488456 | MDR-TB | lineage4.8.1 | None | ERR4821970 | Sensitive | lineage3 | gb | ERR4450959 | Other | La1.7.1 | None | ERR4195616 | Other | lineage2.2.1 | None | ERR4423717 | MDR-TB | lineage4.1.1.3 | None | ERR4450962 | Other | La1.7.1 | None | ERR4553648 | MDR-TB | None | ERR4457917 | Sensitive | lineage4 | None | ERR4553783 | MDR-TB | None | ERR459444 | Pre-XDR-TB | lineage4.8 | None | ERR4772220 | Other | La1.3 | None | ERR9125552 | Sensitive | lineage2.2.1.1 | None | ERR2514126 | Other | lineage4.6.5 | gb | ERR2514812 | HR-TB | lineage1.2.2.2 | gb | ERR2513428 | Other | La1.8.1 | gb | ERR8976017 | Sensitive | lineage4.4.1.1 | None | SRR16088487 | Sensitive | lineage4.2.1.1 | None | SRR16087880 | MDR-TB | lineage2.2.1 | None | SRR21732441 | Sensitive | lineage4.1.2.1 | None | ERR9125479 | HR-TB | lineage1.2.2.2 | None | ERR11489029 | MDR-TB | lineage1.1.3.2 | None | ERR4800107 | Sensitive | lineage3 | None | ERR7361933 | Sensitive | lineage4.1.2.1 | None | ERR8774397 | MDR-TB | lineage4.1.1.3 | None | ERR9121742 | Other | lineage2.2.1 | None | ERR9907683 | MDR-TB | lineage4.1.1 | None | ERR9285797 | Sensitive | lineage3.1.1 | None | ERR9907684 | MDR-TB | lineage4.1.1 | None | ERR9907803 | MDR-TB | lineage4.1.1 | None | ERR9907718 | MDR-TB | lineage4.1.1 | None | SRR1172181 | MDR-TB | lineage1.1.2 | None | SRR1169528 | MDR-TB | lineage1.1.2 | None | SRR1169590 | MDR-TB | lineage1.1.2 | None | SRR1172225 | MDR-TB | lineage1.1.2 | None |
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