Run ID: SRR18002949
Sample name:
Date: 03-04-2023 19:11:08
Number of reads: 1736415
Percentage reads mapped: 61.47
Strain: lineage2.2.1
Drug-resistance: Sensitive
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage2 | East-Asian | Beijing | RD105 | 1.0 |
lineage2.2 | East-Asian (Beijing) | Beijing-RD207 | RD105;RD207 | 1.0 |
lineage2.2.1 | East-Asian (Beijing) | Beijing-RD181 | RD105;RD207;RD181 | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
gyrA | 7585 | p.Ser95Thr | missense_variant | 1.0 |
gyrA | 9304 | p.Gly668Asp | missense_variant | 1.0 |
fgd1 | 491742 | c.960T>C | synonymous_variant | 1.0 |
mshA | 575907 | p.Ala187Val | missense_variant | 1.0 |
ccsA | 620625 | p.Ile245Met | missense_variant | 1.0 |
rpoC | 763031 | c.-339T>C | upstream_gene_variant | 1.0 |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 1.0 |
mmpL5 | 776100 | p.Thr794Ile | missense_variant | 1.0 |
mmpL5 | 776182 | p.Asp767Asn | missense_variant | 1.0 |
mmpS5 | 779615 | c.-710C>G | upstream_gene_variant | 1.0 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
Rv1258c | 1406760 | c.580_581insC | frameshift_variant | 1.0 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
rrs | 1472108 | n.263C>T | non_coding_transcript_exon_variant | 0.22 |
rrs | 1472123 | n.278A>T | non_coding_transcript_exon_variant | 0.22 |
rrs | 1472141 | n.296G>A | non_coding_transcript_exon_variant | 0.25 |
rrs | 1472148 | n.303T>C | non_coding_transcript_exon_variant | 0.29 |
rrs | 1472150 | n.305T>A | non_coding_transcript_exon_variant | 0.38 |
rrs | 1472160 | n.315C>T | non_coding_transcript_exon_variant | 0.29 |
rrs | 1472178 | n.333C>T | non_coding_transcript_exon_variant | 0.25 |
rrs | 1472186 | n.341C>T | non_coding_transcript_exon_variant | 0.18 |
rrs | 1473226 | n.1381C>T | non_coding_transcript_exon_variant | 0.12 |
rrl | 1474823 | n.1166C>G | non_coding_transcript_exon_variant | 0.18 |
rrl | 1474831 | n.1174A>T | non_coding_transcript_exon_variant | 0.18 |
rrl | 1474832 | n.1175A>G | non_coding_transcript_exon_variant | 0.18 |
rrl | 1474837 | n.1180A>G | non_coding_transcript_exon_variant | 0.17 |
rrl | 1474862 | n.1205C>T | non_coding_transcript_exon_variant | 0.17 |
rrl | 1474864 | n.1207C>T | non_coding_transcript_exon_variant | 0.17 |
rrl | 1474883 | n.1226T>C | non_coding_transcript_exon_variant | 0.15 |
rrl | 1474896 | n.1239A>T | non_coding_transcript_exon_variant | 0.15 |
rrl | 1474901 | n.1244A>T | non_coding_transcript_exon_variant | 0.15 |
rrl | 1474902 | n.1245T>C | non_coding_transcript_exon_variant | 0.17 |
rrl | 1474904 | n.1247G>C | non_coding_transcript_exon_variant | 0.18 |
rrl | 1474905 | n.1248T>C | non_coding_transcript_exon_variant | 0.18 |
rrl | 1474913 | n.1256T>C | non_coding_transcript_exon_variant | 0.17 |
rrl | 1474938 | n.1281G>A | non_coding_transcript_exon_variant | 0.18 |
rrl | 1474999 | n.1342C>G | non_coding_transcript_exon_variant | 1.0 |
rrl | 1476164 | n.2507A>G | non_coding_transcript_exon_variant | 0.4 |
rrl | 1476165 | n.2508T>A | non_coding_transcript_exon_variant | 0.4 |
rrl | 1476179 | n.2522C>T | non_coding_transcript_exon_variant | 0.4 |
rrl | 1476187 | n.2530T>C | non_coding_transcript_exon_variant | 0.33 |
rrl | 1476189 | n.2532C>G | non_coding_transcript_exon_variant | 0.33 |
rrl | 1476197 | n.2540T>C | non_coding_transcript_exon_variant | 0.33 |
rrl | 1476200 | n.2543A>T | non_coding_transcript_exon_variant | 0.29 |
rrl | 1476201 | n.2544C>T | non_coding_transcript_exon_variant | 0.29 |
rrl | 1476209 | n.2552A>G | non_coding_transcript_exon_variant | 0.29 |
rrl | 1476214 | n.2557G>T | non_coding_transcript_exon_variant | 0.29 |
rrl | 1476215 | n.2558C>T | non_coding_transcript_exon_variant | 0.29 |
rrl | 1476224 | n.2567A>T | non_coding_transcript_exon_variant | 0.29 |
rrl | 1476225 | n.2568T>C | non_coding_transcript_exon_variant | 0.25 |
rrl | 1476226 | n.2569G>A | non_coding_transcript_exon_variant | 0.25 |
rrl | 1476233 | n.2576G>C | non_coding_transcript_exon_variant | 0.25 |
rrl | 1476235 | n.2578A>G | non_coding_transcript_exon_variant | 0.25 |
rrl | 1476245 | n.2588C>T | non_coding_transcript_exon_variant | 0.43 |
rrl | 1476252 | n.2595T>G | non_coding_transcript_exon_variant | 0.57 |
rrl | 1476256 | n.2599A>G | non_coding_transcript_exon_variant | 0.33 |
rrl | 1476260 | n.2603A>G | non_coding_transcript_exon_variant | 0.62 |
rrl | 1476279 | n.2622G>A | non_coding_transcript_exon_variant | 0.22 |
rrl | 1476281 | n.2624T>C | non_coding_transcript_exon_variant | 0.22 |
rrl | 1476294 | n.2637A>G | non_coding_transcript_exon_variant | 0.3 |
rrl | 1476297 | n.2640C>A | non_coding_transcript_exon_variant | 0.22 |
rrl | 1476298 | n.2641C>G | non_coding_transcript_exon_variant | 0.2 |
rrl | 1476300 | n.2643G>A | non_coding_transcript_exon_variant | 0.18 |
rrl | 1476301 | n.2644A>G | non_coding_transcript_exon_variant | 0.2 |
rrl | 1476309 | n.2652G>C | non_coding_transcript_exon_variant | 0.17 |
rrl | 1476312 | n.2655T>C | non_coding_transcript_exon_variant | 0.31 |
rrl | 1476331 | n.2674G>A | non_coding_transcript_exon_variant | 0.12 |
rrl | 1476332 | n.2675G>C | non_coding_transcript_exon_variant | 0.24 |
rrl | 1476356 | n.2699C>A | non_coding_transcript_exon_variant | 0.22 |
rrl | 1476357 | n.2700T>C | non_coding_transcript_exon_variant | 0.17 |
rrl | 1476359 | n.2702C>T | non_coding_transcript_exon_variant | 0.2 |
rrl | 1476381 | n.2724G>A | non_coding_transcript_exon_variant | 0.25 |
rrl | 1476383 | n.2726T>G | non_coding_transcript_exon_variant | 0.26 |
rrl | 1476384 | n.2727G>T | non_coding_transcript_exon_variant | 0.29 |
rrl | 1476411 | n.2754G>T | non_coding_transcript_exon_variant | 0.23 |
rrl | 1476428 | n.2771C>A | non_coding_transcript_exon_variant | 0.25 |
rrl | 1476463 | n.2806C>A | non_coding_transcript_exon_variant | 0.17 |
rrl | 1476481 | n.2824T>C | non_coding_transcript_exon_variant | 0.21 |
rrl | 1476506 | n.2849T>C | non_coding_transcript_exon_variant | 0.12 |
rrl | 1476676 | n.3019A>G | non_coding_transcript_exon_variant | 0.17 |
rrl | 1476704 | n.3053delC | non_coding_transcript_exon_variant | 1.0 |
rpsA | 1833410 | c.-132G>A | upstream_gene_variant | 1.0 |
rpsA | 1834177 | c.636A>C | synonymous_variant | 1.0 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
katG | 2154724 | p.Arg463Leu | missense_variant | 1.0 |
PPE35 | 2167926 | p.Leu896Ser | missense_variant | 1.0 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
ald | 3086788 | c.-32T>C | upstream_gene_variant | 1.0 |
fprA | 3473996 | c.-11_-10insA | upstream_gene_variant | 1.0 |
Rv3236c | 3612813 | p.Thr102Ala | missense_variant | 1.0 |
rpoA | 3878639 | c.-132C>G | upstream_gene_variant | 0.1 |
embA | 4242643 | c.-590C>T | upstream_gene_variant | 1.0 |
embA | 4243460 | c.228C>T | synonymous_variant | 1.0 |
embB | 4246548 | p.Pro12Gln | missense_variant | 0.15 |
embB | 4246555 | c.42G>C | synonymous_variant | 0.15 |
embB | 4246556 | p.Ala15Pro | missense_variant | 0.15 |
embB | 4246563 | p.Leu17Trp | missense_variant | 0.23 |
embB | 4246567 | c.54G>T | synonymous_variant | 0.17 |
aftB | 4267647 | p.Asp397Gly | missense_variant | 1.0 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |
gid | 4407588 | c.615A>G | synonymous_variant | 1.0 |
gid | 4407927 | p.Glu92Asp | missense_variant | 1.0 |