ERR6397152
|
MDR-TB
|
lineage4.2.2.1
|
None
|
ERR6397159
|
Other
|
lineage4.6.5
|
None
|
ERR6397201
|
Sensitive
|
lineage4.1.1.3
|
None
|
SRR16058070
|
RR-TB
|
lineage1.2.1.2.1
|
None
|
ERR6336734
|
Sensitive
|
lineage1.2.1.2.1
|
None
|
ERR6336747
|
HR-TB
|
lineage1.2.1.2.1
|
None
|
ERR6336741
|
Sensitive
|
lineage1.2.1.2.1
|
None
|
SRR21277324
|
RR-TB
|
lineage2.2.1.1
|
None
|
ERR10877874
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR6336705
|
Sensitive
|
lineage1.2.1.2.1
|
None
|
SRR18002946
|
Sensitive
|
lineage2.2.1
|
None
|
SRR18002939
|
Sensitive
|
lineage2.2.2
|
None
|
SRR3675238
|
Other
|
lineage3
|
gb
|
ERR7801297
|
Sensitive
|
lineage4.3.4.2.1
|
None
|
ERR9901037
|
Sensitive
|
lineage1.1.3.1
|
None
|
ERR7801302
|
Sensitive
|
lineage4.3.4.2.1
|
None
|
ERR12545823
|
RR-TB
|
lineage4.8
|
None
|
ERR9119707
|
MDR-TB
|
lineage4.1.1.3
|
None
|
ERR2229351
|
Sensitive
|
lineage4.8
|
None
|
SRR8073668
|
Other
|
La1.8.1
|
None
|
SRR18054776
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR9613550
|
HR-TB
|
lineage4.1.2.1
|
None
|
ERR10877869
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR6336690
|
HR-TB
|
lineage1.2.1.2.1
|
None
|
ERR7801290
|
Sensitive
|
lineage4.9.1
|
None
|
SRR25340897
|
Sensitive
|
lineage1.1.2
|
None
|
ERR2229339
|
Sensitive
|
lineage4.8
|
dk
|
ERR6397164
|
Sensitive
|
lineage3
|
None
|
ERR6397188
|
MDR-TB
|
lineage3
|
None
|
ERR6397202
|
Sensitive
|
lineage3
|
None
|
ERR2199808
|
Sensitive
|
lineage4.3.4.2
|
de
|
ERR3209513
|
Sensitive
|
lineage4.9
|
None
|
ERR6397211
|
Sensitive
|
lineage3
|
None
|
SRR21277114
|
Sensitive
|
lineage2.2.1
|
None
|
ERR12549777
|
RR-TB
|
lineage4.8
|
None
|
ERR5866472
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR12544299
|
Other
|
lineage2.2.1
|
None
|
ERR11243552
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR7821149
|
Sensitive
|
lineage2.2.1
|
None
|
SRR21690589
|
Sensitive
|
lineage3.1.1
|
None
|
SRR24466787
|
MDR-TB
|
lineage4.1.2.1
|
None
|
SRR28119764
|
Other
|
lineage2.2.1
|
None
|
SRR28119842
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR5336166
|
Sensitive
|
lineage6.3.2
|
None
|
SRR12882347
|
Other
|
lineage1.2.1.2.1
|
None
|
SRR12882538
|
Sensitive
|
lineage1.1.2
|
None
|
ERR6336800
|
Other
|
lineage1.2.1.2.1
|
None
|
SRR18002963
|
Other
|
lineage2.2.1
|
None
|
ERR4797122
|
Sensitive
|
lineage1.2.2.2
|
None
|
SRR28119815
|
Sensitive
|
lineage2.2.1
|
None
|
ERR10868931
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR25827628
|
XDR-TB
|
lineage3
|
None
|
ERR6397177
|
Sensitive
|
lineage3
|
None
|
SRR18002976
|
Other
|
lineage2.2.1
|
None
|
ERR6397161
|
Other
|
lineage4.2.2.2
|
None
|
ERR7801321
|
Sensitive
|
lineage4.3.4.2.1
|
None
|
ERR11464972
|
Sensitive
|
lineage4.1.2.1
|
None
|
SAMEA4041371
|
Sensitive
|
lineage4.7
|
None
|
SRR21277037
|
Sensitive
|
lineage4.4.2
|
None
|
SRR21277121
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR25827781
|
XDR-TB
|
lineage2.2.1
|
None
|
ERR6336774
|
Sensitive
|
lineage1.2.1.2.1
|
None
|
SRR12882113
|
Sensitive
|
lineage1.2.1.2
|
None
|
SRR12882114
|
Sensitive
|
lineage1.2.1.2
|
None
|
SRR12882414
|
Sensitive
|
lineage3.1.1
|
None
|
SRR28119790
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR10867699
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR17712105
|
Sensitive
|
lineage2.2.2
|
None
|
SRR27241222
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR28045590
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR12544386
|
Sensitive
|
lineage4.2.1
|
None
|
ERR10877872
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR13259939
|
HR-TB
|
lineage2.2.1
|
None
|
SRR21277055
|
Sensitive
|
lineage2.2.1
|
None
|
SRR21277027
|
Sensitive
|
lineage2.2.1.1
|
None
|
SRR21277092
|
Sensitive
|
lineage2.2.1
|
None
|
ERR6336703
|
Sensitive
|
lineage1.2.1.2.1
|
None
|
SRR21277159
|
HR-TB
|
lineage4.5
|
None
|
SRR12882426
|
Sensitive
|
lineage1.2.2.1
|
None
|
ERR7801306
|
Sensitive
|
lineage2.2.1
|
None
|
ERR6336752
|
Sensitive
|
lineage1.2.1.2.1
|
None
|
ERR7801287
|
Sensitive
|
lineage4.3.3
|
None
|
SRR1172107
|
Sensitive
|
lineage1.1.2;lineage1.1.3.3
|
None
|
SRR18002944
|
Sensitive
|
lineage2.2.1
|
None
|
ERR2229108
|
Sensitive
|
lineage4.8
|
dk
|
SRR12882329
|
Sensitive
|
lineage3.1.1
|
None
|
ERR11466352
|
Other
|
lineage4.1.1.3
|
None
|
SRR12882195
|
Sensitive
|
lineage1.2.1.2
|
None
|
ERR553287
|
Sensitive
|
lineage4.2.2.1
|
de
|
ERR11465330
|
Sensitive
|
lineage4.4.1.1
|
None
|
SRR6785240
|
Sensitive
|
lineage4.3.3
|
None
|
SRR28119824
|
Sensitive
|
lineage2.2.1
|
None
|
SRR21277082
|
Sensitive
|
lineage2.2.1
|
None
|
SRR28119718
|
Sensitive
|
lineage4.5
|
None
|
ERR10867702
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR28119835
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR11466063
|
Sensitive
|
lineage4.1.2.1
|
None
|
ERR11466552
|
Sensitive
|
lineage4.4.1.1
|
None
|
SRR21277311
|
Sensitive
|
lineage2.2.1.1
|
None
|
SRR28119736
|
Other
|
lineage2.2.1
|
None
|
ERR10877870
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
ERR6336720
|
HR-TB
|
lineage1.2.1.2.1
|
None
|
SRR9613544
|
Sensitive
|
lineage4.5
|
None
|
SRR28119829
|
Sensitive
|
lineage4.4.2
|
None
|
ERR6397200
|
MDR-TB
|
lineage4.2.2.2
|
None
|
SRR28119745
|
MDR-TB
|
lineage2.2.2
|
None
|
ERR7801292
|
Sensitive
|
lineage4.3.4.2.1
|
None
|
ERR4796887
|
Sensitive
|
lineage4.8
|
in
|
SRR28119785
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR29385322
|
HR-TB
|
lineage2.2.1.1
|
None
|
SRR12882441
|
Sensitive
|
lineage1.2.1.2
|
None
|
ERR10877856
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR12544389
|
Sensitive
|
lineage2.2.1
|
None
|
SRR18002878
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR2229366
|
Other
|
lineage4.8
|
None
|
SRR5073576
|
Sensitive
|
lineage2.2.1
|
vn
|
SRR28119845
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR6336742
|
Sensitive
|
lineage1.2.1.2
|
None
|
ERR9119845
|
Pre-XDR-TB
|
lineage4.4.1.1
|
None
|
SRR28119810
|
Sensitive
|
lineage2.2.1
|
None
|
ERR2245395
|
Other
|
lineage3.1.1
|
no
|
SRR29539432
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR7821137
|
Sensitive
|
lineage2.2.1
|
None
|
ERR6336694
|
Sensitive
|
lineage1.2.1.2.1
|
None
|
ERR6397160
|
Sensitive
|
lineage3
|
None
|
ERR6397216
|
Sensitive
|
lineage4.2.1
|
None
|
ERR10877894
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR21277337
|
Sensitive
|
lineage4.5
|
None
|
SRR28119793
|
Other
|
lineage2.2.1
|
None
|
ERR5336160
|
Other
|
lineage6.3.2
|
None
|
SRR28119836
|
Sensitive
|
lineage2.2.1.1
|
None
|
ERR6336770
|
Sensitive
|
lineage1.2.1.2.1
|
None
|
ERR6336778
|
Sensitive
|
lineage4.3.4.2
|
None
|
ERR6397205
|
MDR-TB
|
lineage3
|
None
|
ERR7801316
|
Sensitive
|
lineage2.2.1
|
None
|
ERR6336710
|
RR-TB
|
lineage1.2.1.2.1
|
None
|
SRR18002971
|
Other
|
lineage2.2.1
|
None
|
ERR11465954
|
Sensitive
|
lineage4.8.1;lineage4.9
|
None
|
SRR16295738
|
Other
|
lineage2.2.1
|
None
|
SRR12882345
|
HR-TB
|
lineage3.1.1
|
None
|
SRR28119806
|
Sensitive
|
lineage2.2.1
|
None
|
SRR28119798
|
Other
|
lineage2.2.1
|
None
|
SRR21277234
|
Sensitive
|
lineage2.2.1.1
|
None
|
SRR11444393
|
Sensitive
|
lineage4.6.2.2
|
None
|
SRR12882666
|
RR-TB
|
lineage3
|
None
|
ERR12790853
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR28119772
|
Pre-XDR-TB
|
lineage2.2.1.1
|
None
|
ERR6397187
|
Sensitive
|
lineage3.1.1
|
None
|
SRR12882092
|
Sensitive
|
lineage1.2.1.2
|
None
|
SRR12882335
|
Sensitive
|
lineage3.1.1
|
None
|
ERR11465495
|
Sensitive
|
lineage4.4.1.1
|
None
|
SRR6855747
|
Sensitive
|
lineage4.1.2.1
|
None
|
SRR28119817
|
Sensitive
|
lineage2.2.1
|
None
|
SRR18003001
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR25056551
|
Sensitive
|
lineage2.2.1.1;lineage4
|
None
|
SRR17712106
|
HR-TB
|
lineage2.2.1
|
None
|
ERR11465470
|
Sensitive
|
lineage2.2.1
|
None
|
ERR6336704
|
Sensitive
|
lineage1.2.1.2.1
|
None
|
SRR28119808
|
Sensitive
|
lineage2.2.1
|
None
|
SRR21277018
|
Sensitive
|
lineage4.4.2
|
None
|
ERR9125184
|
RR-TB
|
lineage1.2.1.2.1
|
None
|
ERR11243561
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR13260141
|
Sensitive
|
lineage2.2.1
|
None
|
ERR6397218
|
Sensitive
|
lineage3
|
None
|
SRR28045591
|
MDR-TB
|
lineage4.2.2.2
|
None
|
SRR21277040
|
HR-TB
|
lineage2.2.1
|
None
|
SRR12882091
|
Sensitive
|
lineage1.2.1.2
|
None
|
ERR6397213
|
MDR-TB
|
lineage4.2.2.2
|
None
|
SRR12882477
|
Sensitive
|
lineage1.2.1.2.1
|
None
|
SRR16295794
|
Other
|
lineage2.2.1
|
None
|
SRR28119759
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR10877888
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR10869170
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
ERR10877882
|
MDR-TB
|
lineage4.2.1;lineage4.3.3
|
None
|
SRR28119769
|
Other
|
lineage2.2.1
|
None
|
ERR12544298
|
RR-TB
|
lineage4.8
|
None
|
ERR1465841
|
Sensitive
|
lineage4.8
|
None
|
ERR11465134
|
Sensitive
|
lineage4.1.2.1;lineage4.4.1.1
|
None
|
ERR5336168
|
Sensitive
|
lineage5.1
|
None
|
SRR28119828
|
MDR-TB
|
lineage4.5
|
None
|
ERR6397168
|
Pre-XDR-TB
|
lineage3
|
None
|
ERR7801325
|
Sensitive
|
lineage4.3.4.2
|
None
|
SRR21277050
|
HR-TB
|
lineage2.2.1
|
None
|
SRR21277137
|
Sensitive
|
lineage2.2.1
|
None
|
SRR21277345
|
HR-TB
|
lineage4.4.2
|
None
|
ERR2245386
|
Other
|
lineage3.1.1
|
no
|
ERR2229756
|
Sensitive
|
lineage4.8
|
None
|
SRR28119735
|
Other
|
lineage2.2.1
|
None
|
SRR22251772
|
Sensitive
|
lineage1.1.1.1
|
None
|
SRR12882604
|
Sensitive
|
lineage1.1.2
|
None
|
ERR10868477
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR6397212
|
MDR-TB
|
lineage3
|
None
|
ERR6397195
|
MDR-TB
|
lineage3
|
None
|
ERR2229730
|
Sensitive
|
lineage4.8
|
dk
|
ERR6336717
|
HR-TB
|
lineage2.2.1.1
|
None
|
SRR14519105
|
Sensitive
|
lineage2.2.1
|
None
|
SRR26800452
|
Sensitive
|
lineage3
|
None
|
SRR18003008
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
SRR25827360
|
Pre-XDR-TB
|
lineage3;lineage4
|
None
|
ERR11464957
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR6336767
|
Sensitive
|
lineage1.2.1.2.1
|
None
|
ERR7801311
|
Sensitive
|
lineage4.3.4.2.1
|
None
|
SRR28119721
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR6336689
|
Sensitive
|
lineage1.2.1.2.1
|
None
|
ERR6336754
|
Sensitive
|
lineage1.2.1.2.1
|
None
|
ERR11465364
|
Sensitive
|
lineage4.3.4.2.1
|
None
|
ERR12549577
|
Sensitive
|
lineage4.3.3
|
None
|
ERR12549781
|
Sensitive
|
lineage2.2.1
|
None
|
ERR13259935
|
Sensitive
|
lineage2.2.1
|
None
|
SRR15217985
|
MDR-TB
|
lineage4.1.2
|
None
|
ERR2446311
|
Sensitive
|
lineage3
|
nl
|
ERR4827902
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR16295823
|
Other
|
lineage2.2.1
|
None
|
SRR12882102
|
Sensitive
|
lineage1.2.1.2
|
None
|
ERR6397176
|
MDR-TB
|
lineage4.1.2.1
|
None
|
ERR12549711
|
Sensitive
|
lineage4.8
|
None
|
SRR21276997
|
Sensitive
|
lineage2.2.1
|
None
|
SRR21277216
|
Sensitive
|
lineage2.2.1.1
|
None
|
SRR8758894
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR2229312
|
Sensitive
|
lineage4.8
|
None
|
SRR28119770
|
Other
|
lineage2.2.1
|
None
|
ERR11243570
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR6336721
|
Sensitive
|
lineage1.2.1.2.1
|
None
|
ERR6336700
|
RR-TB
|
lineage1.2.1.2.1
|
None
|
ERR6397198
|
Sensitive
|
lineage4.3.3
|
None
|
ERR11465447
|
Sensitive
|
lineage4.3.4.2.1
|
None
|
ERR6052041
|
MDR-TB
|
lineage4.1.1.3
|
None
|
ERR6336693
|
HR-TB
|
lineage1.2.1.2.1
|
None
|
ERR6336792
|
HR-TB
|
lineage1.2.1.2.1
|
None
|
ERR11465092
|
Sensitive
|
lineage4.3.4.2.1
|
None
|
SRR21277052
|
Sensitive
|
lineage2.2.1.1
|
None
|
ERR6397183
|
Sensitive
|
lineage3
|
None
|
ERR6336728
|
Sensitive
|
lineage1.2.1.2.1
|
None
|
SRR21576643
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR12882661
|
Sensitive
|
lineage1.1.2
|
None
|
SRR21277087
|
Sensitive
|
lineage2.2.1.1
|
None
|
ERR7801289
|
Sensitive
|
lineage4.3.4.2.1
|
None
|
ERR7801300
|
HR-TB
|
lineage4.9.1
|
None
|
SRR14296337
|
Other
|
La1.8.1
|
None
|
ERR6397185
|
Sensitive
|
lineage3
|
None
|
SRR21277058
|
Sensitive
|
lineage2.2.1
|
None
|
ERR6336735
|
HR-TB
|
lineage1.2.1.2.1
|
None
|
ERR12544387
|
Sensitive
|
lineage4.3.3
|
None
|
ERR6397158
|
Sensitive
|
lineage3
|
None
|
ERR12544442
|
RR-TB
|
lineage4.8
|
None
|
SRR21277068
|
Sensitive
|
lineage2.2.1.1
|
None
|
ERR3256140
|
Sensitive
|
lineage1.2.1.2.1
|
ph
|
ERR5336165
|
Sensitive
|
lineage6.3.2
|
None
|
ERR11466563
|
Sensitive
|
lineage4.3.4.1
|
None
|
SRR25056554
|
Sensitive
|
lineage4.9
|
None
|
ERR12544262
|
RR-TB
|
lineage4.2.1.1
|
None
|
SRR21277056
|
Sensitive
|
lineage2.2.1
|
None
|
ERR2653005
|
Sensitive
|
lineage4.7
|
None
|
ERR6336715
|
Sensitive
|
lineage1.2.1.2.1
|
None
|
ERR6336687
|
MDR-TB
|
lineage1.2.1.2.1
|
None
|
ERR6336725
|
HR-TB
|
lineage1.2.1.2.1
|
None
|
ERR6336781
|
Sensitive
|
lineage1.2.1.2.1
|
None
|
SRR18002949
|
Sensitive
|
lineage2.2.1
|
None
|
ERR2229370
|
RR-TB
|
lineage4.8
|
None
|
SRR12882432
|
Sensitive
|
lineage1.2.1.2
|
None
|
SRR28119719
|
MDR-TB
|
lineage2.2.2
|
None
|
ERR10867783
|
MDR-TB
|
lineage4.8
|
None
|
ERR6336724
|
Sensitive
|
lineage1.2.1.2.1
|
None
|
ERR7801308
|
Sensitive
|
lineage2.2.1
|
None
|
ERR6397153
|
Sensitive
|
lineage4.1.2.1
|
None
|
SRR18002951
|
Other
|
lineage4.5
|
None
|
ERR11466533
|
RR-TB
|
lineage4.4.1.1
|
None
|
ERR11465459
|
Sensitive
|
lineage4.3.4.2.1
|
None
|
ERR11465496
|
Sensitive
|
lineage4.3.4.2.1
|
None
|
SRR25340865
|
Sensitive
|
lineage1.1.2
|
None
|
ERR7801301
|
Sensitive
|
lineage4.3.4.2.1
|
None
|
ERR7801315
|
Sensitive
|
lineage2.2.1
|
None
|
SRR25827355
|
Pre-XDR-TB
|
lineage2.2.1;lineage3;lineage4
|
None
|
ERR5336171
|
Sensitive
|
lineage9
|
None
|
SRR28119787
|
Sensitive
|
lineage2.2.1
|
None
|
SRR12882110
|
Other
|
lineage1.2.1.2
|
None
|
SRR28045592
|
Sensitive
|
lineage1.1.3.2
|
None
|
ERR6397184
|
MDR-TB
|
La3;lineage3
|
None
|
ERR6336784
|
Sensitive
|
lineage1.2.1.2
|
None
|
ERR6336789
|
MDR-TB
|
lineage1.2.1.2.1
|
None
|
ERR6397166
|
MDR-TB
|
lineage4.2.2.2
|
None
|
SRR21277060
|
Sensitive
|
lineage4.5
|
None
|
SRR21277158
|
Sensitive
|
lineage2.2.1.1
|
None
|
SRR21277094
|
Sensitive
|
lineage2.2.1
|
None
|
SRR21277355
|
Sensitive
|
lineage2.2.1.1
|
None
|
SRR24112528
|
RR-TB
|
lineage2.2.2
|
None
|
ERR2245427
|
Other
|
lineage3.1.1
|
no
|
SRR23961539
|
Other
|
La1.7.1
|
None
|
ERR2517625
|
Sensitive
|
lineage3
|
nl
|
SRR21277067
|
Sensitive
|
lineage2.2.1.1
|
None
|
ERR6397214
|
Sensitive
|
lineage4.2.2.2
|
None
|
ERR10877890
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR551867
|
Sensitive
|
lineage4.6.2.2
|
de
|
ERR2446330
|
Sensitive
|
lineage4.1
|
nl
|
SRR25827301
|
Pre-XDR-TB
|
lineage3.1.2
|
None
|
ERR10877880
|
MDR-TB
|
lineage4.3.3
|
None
|
SRR28045599
|
Sensitive
|
lineage1.1.2
|
None
|
ERR11466524
|
Sensitive
|
lineage4.1.2
|
None
|
SRR21277002
|
Sensitive
|
lineage2.2.1
|
None
|
ERR11465555
|
Sensitive
|
lineage4.4.1.1
|
None
|
SRR28119804
|
Other
|
lineage2.2.1
|
None
|
ERR2229026
|
Sensitive
|
lineage4.8
|
dk
|
ERR11465197
|
Sensitive
|
lineage2.2.1
|
None
|
ERR6336745
|
Other
|
lineage1.2.1.2.1
|
None
|
ERR6397146
|
Sensitive
|
lineage3
|
None
|
SRR25827829
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR11466349
|
Other
|
lineage2.2.1
|
None
|
ERR6397209
|
Sensitive
|
lineage4.6.3
|
None
|
SRR25827863
|
MDR-TB
|
lineage1.2.2.2
|
None
|
SRR28119841
|
MDR-TB
|
lineage2.2.1.1
|
None
|
SRR12882681
|
Sensitive
|
lineage1.1.2
|
None
|
ERR13290216
|
Sensitive
|
lineage4.1.2.1
|
None
|
ERR11465932
|
Sensitive
|
lineage2.2.1
|
None
|
SRR6785294
|
Sensitive
|
lineage4.3.3
|
None
|
ERR11465888
|
Sensitive
|
lineage4.3.4.2.1
|
None
|
ERR2229707
|
Sensitive
|
lineage4.8
|
None
|
SRR21277301
|
Sensitive
|
lineage2.2.1.1
|
None
|
SRR28119812
|
Sensitive
|
lineage2.2.1
|
None
|
SRR4033166
|
RR-TB
|
lineage2.2.1
|
za
|
SRR12882104
|
Sensitive
|
lineage1.2.1.2
|
None
|
SRR12882436
|
Sensitive
|
lineage1.2.1.2
|
None
|
SRR18003048
|
XDR-TB
|
lineage2.2.1
|
None
|
SRR21277084
|
Sensitive
|
lineage2.2.1
|
None
|
ERR12544380
|
HR-TB
|
lineage2.2.1;lineage4.1.2.1
|
None
|
ERR4800200
|
Sensitive
|
lineage1.1.2
|
in
|
ERR6397210
|
Sensitive
|
lineage3
|
None
|
SRR12882333
|
Other
|
lineage3
|
None
|
SRR12882673
|
Sensitive
|
lineage1.1.2
|
None
|
SRR21277386
|
Sensitive
|
lineage2.2.1.1
|
None
|
ERR11465446
|
Sensitive
|
lineage4.3.4.2.1
|
None
|
SRR18548987
|
Sensitive
|
lineage4.5
|
None
|
SRR28119831
|
RR-TB
|
lineage4.4.2
|
None
|
ERR11466578
|
Sensitive
|
lineage4.3.4.2.1
|
None
|
ERR11465367
|
Sensitive
|
lineage4.9
|
None
|
SRR21277327
|
Sensitive
|
lineage2.2.1.1
|
None
|
SRR21277368
|
Sensitive
|
lineage2.2.1.1
|
None
|
SRR21277039
|
Sensitive
|
lineage2.2.1
|
None
|
ERR12790846
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR550632
|
Sensitive
|
lineage4.8
|
de
|
ERR10877883
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR21277049
|
Sensitive
|
lineage4.5
|
None
|
ERR11243553
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4863405
|
Pre-XDR-TB
|
lineage2.2.1;lineage4.1.2.1
|
None
|
SRR12882115
|
HR-TB
|
lineage1.2.1.2
|
None
|
ERR3275555
|
Sensitive
|
lineage3
|
nl
|
ERR13259933
|
Sensitive
|
lineage2.2.1
|
None
|
ERR4827880
|
HR-TB
|
lineage2.2.1
|
None
|
ERR552096
|
Sensitive
|
lineage4.4.1.1
|
de
|
ERR11466060
|
Sensitive
|
lineage4.1.1.3
|
None
|
SRR28119784
|
Sensitive
|
lineage2.2.1
|
None
|
ERR2229319
|
Sensitive
|
lineage4.8
|
dk
|
SRR12882334
|
Sensitive
|
lineage3.1.1
|
None
|
SRR12882097
|
Sensitive
|
lineage1.2.1.2
|
None
|
ERR12916922
|
XDR-TB
|
lineage2.2.1
|
None
|
ERR6336733
|
HR-TB
|
lineage1.2.1.2.1
|
None
|
ERR11466561
|
Sensitive
|
lineage4.3.4.2.1
|
None
|
ERR2245406
|
Sensitive
|
lineage3.1.1
|
no
|
ERR6336790
|
HR-TB
|
lineage1.2.1.2.1
|
None
|
SRR12882200
|
HR-TB
|
lineage1.2.1.2
|
None
|
SRR12882323
|
Sensitive
|
lineage1.2.2.2
|
None
|
SRR12882342
|
Sensitive
|
lineage1.1.2
|
None
|
SRR8237309
|
MDR-TB
|
lineage2.2.1
|
np
|
SRR28119792
|
HR-TB
|
lineage2.2.1
|
None
|
ERR12545821
|
Sensitive
|
lineage4.3.3
|
None
|
ERR12916911
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR28119747
|
Sensitive
|
lineage2.2.1
|
None
|
ERR11465373
|
Sensitive
|
lineage4.3.4.2.1
|
None
|
SRR27241221
|
Sensitive
|
lineage2.2.1
|
None
|
SRR22251181
|
Sensitive
|
lineage3
|
None
|
ERR11465417
|
Sensitive
|
lineage2.2.1
|
None
|
ERR6336740
|
Other
|
lineage1.2.1.2.1
|
None
|
ERR2229735
|
Sensitive
|
lineage4.8
|
dk
|
ERR2229598
|
Sensitive
|
lineage4.8
|
dk
|
ERR6336709
|
Sensitive
|
lineage1.2.1.2.1
|
None
|
ERR11465196
|
Sensitive
|
lineage2.2.1
|
None
|
ERR4827888
|
MDR-TB
|
lineage4.2.1
|
None
|
ERR10869501
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR2245403
|
Sensitive
|
lineage3.1.1
|
no
|
SRR25827581
|
Pre-XDR-TB
|
lineage1.1.3.1;lineage2.2.1
|
None
|
ERR6336696
|
HR-TB
|
lineage1.2.1.2.1
|
None
|
ERR6336785
|
Sensitive
|
lineage1.2.1.2.1
|
None
|
ERR6397150
|
Sensitive
|
lineage4.2.2.2
|
None
|
SRR18002903
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR12546193
|
Sensitive
|
lineage4.3.3;lineage4.8
|
None
|
ERR12544444
|
Sensitive
|
lineage2.2.1
|
None
|
SRR18003007
|
MDR-TB
|
lineage4.5
|
None
|
SRR12882116
|
Sensitive
|
lineage1.2.1.2
|
None
|
SRR12882429
|
Sensitive
|
lineage1.2.1.2
|
None
|
SRR12882341
|
Sensitive
|
lineage3.1.1
|
None
|
SRR12882417
|
Sensitive
|
lineage3.1.1
|
None
|
ERR8158089
|
Sensitive
|
lineage2.2.1
|
None
|
SRR16295779
|
Other
|
lineage2.2.1
|
None
|
SRR12882197
|
Sensitive
|
lineage1.2.1.2
|
None
|
ERR11243568
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR11464949
|
Sensitive
|
lineage2.2.1
|
None
|
ERR5336146
|
Sensitive
|
lineage5.1.2
|
None
|
SRR21277053
|
Sensitive
|
lineage2.2.1
|
None
|
SRR28119800
|
Other
|
lineage2.2.1
|
None
|
ERR10877861
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR11465110
|
Sensitive
|
lineage2.2.1;lineage4.3.4.1
|
None
|
SRR24112526
|
MDR-TB
|
lineage2.2.2
|
None
|
ERR12549652
|
Sensitive
|
lineage4.3.3
|
None
|
SRR28119767
|
Sensitive
|
lineage2.2.1
|
None
|
ERR11465755
|
Sensitive
|
lineage2.2.1
|
None
|
ERR6397156
|
Sensitive
|
lineage3
|
None
|
ERR2245409
|
HR-TB
|
lineage3.1.1
|
no
|
ERR2245416
|
HR-TB
|
lineage3.1.1
|
no
|
ERR2245420
|
Other
|
lineage3.1.1
|
no
|
ERR1465985_ERR1465884
|
Sensitive
|
lineage4.7
|
None
|
SRR12882437
|
Other
|
lineage1.2.1.2
|
None
|
SRR6485149
|
HR-TB
|
lineage2.2.1;lineage4.3.3
|
None
|
SRR21690604
|
Pre-XDR-TB
|
lineage4.1.2.1
|
None
|
ERR6336732
|
Sensitive
|
lineage1.2.1.2.1
|
None
|
SRR21277142
|
Sensitive
|
lineage2.2.1
|
None
|
ERR6336779
|
Sensitive
|
lineage1.2.1.2.1
|
None
|
ERR7801310
|
Sensitive
|
lineage4.3.4.2.1
|
None
|
ERR7801286
|
Sensitive
|
lineage4.6.1.1
|
None
|
ERR7801305
|
Sensitive
|
lineage4.3.4.2.1
|
None
|
ERR6397174
|
MDR-TB
|
lineage4.1.2.1
|
None
|
ERR6397217
|
Sensitive
|
lineage4.2.2.2
|
None
|
ERR7801293
|
Sensitive
|
lineage4.3.4.2.1
|
None
|
SRR21277138
|
Sensitive
|
lineage2.2.1
|
None
|
ERR550666
|
RR-TB
|
lineage4.8
|
None
|
ERR1035275
|
MDR-TB
|
lineage4.3.4.2
|
br
|
ERR12545829
|
Sensitive
|
lineage4.1.2
|
None
|
SRR12882435
|
Sensitive
|
lineage1.2.1.2
|
None
|
ERR6336706
|
Sensitive
|
lineage1.2.1.2.1
|
None
|
ERR6336794
|
Sensitive
|
lineage1.2.1.2.1
|
None
|
ERR12544446
|
Sensitive
|
lineage4.2.1
|
None
|
SRR19612358
|
Other
|
lineage2.2.1
|
None
|
ERR11465893
|
Sensitive
|
lineage4.1.1.3
|
None
|
ERR11466176
|
Sensitive
|
lineage4.4.1.1
|
None
|
SRR21277153
|
Sensitive
|
lineage2.2.1.1
|
None
|
SRR21277089
|
Sensitive
|
lineage2.2.1.1
|
None
|
ERR2245383
|
Sensitive
|
lineage3.1.1
|
no
|
SRR18002879
|
MDR-TB
|
lineage4.4.2
|
None
|
ERR11465311
|
Sensitive
|
lineage4.1.2.1
|
None
|
SRR6485131
|
Sensitive
|
lineage4
|
None
|
ERR11465201
|
Sensitive
|
lineage4.3.4.1
|
None
|
SRR24112527
|
MDR-TB
|
lineage2.2.2
|
None
|
ERR2229697
|
Sensitive
|
lineage4.8
|
dk
|
ERR11466076
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR11464969
|
Sensitive
|
lineage2.2.1
|
None
|
SRR16295827
|
Other
|
lineage2.2.1
|
None
|
SRR28119750
|
RR-TB
|
lineage4.4.2
|
None
|
SRR28119816
|
HR-TB
|
lineage2.2.1
|
None
|
SRR12882096
|
Sensitive
|
lineage1.2.1.2
|
None
|
ERR6336699
|
MDR-TB
|
lineage1.2.1.2.1
|
None
|
SRR18002906
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR6336716
|
Sensitive
|
lineage1.2.1.2.1
|
None
|
ERR6397149
|
Sensitive
|
lineage1.2.1.1
|
None
|
ERR6336726
|
Sensitive
|
lineage1.2.1.2.1
|
None
|
SRR21277175
|
Sensitive
|
lineage2.2.1
|
None
|
SRR25827670
|
MDR-TB
|
lineage4.3.3
|
None
|
SRR12882094
|
Sensitive
|
lineage1.2.1.2
|
None
|
SRR12882337
|
Sensitive
|
lineage3.1.1
|
None
|
ERR7801294
|
Sensitive
|
lineage4.3.4.2
|
None
|
ERR12549780
|
Sensitive
|
lineage4.8
|
None
|
SRR3743202
|
Pre-XDR-TB
|
lineage4.8
|
None
|
ERR11464990
|
Sensitive
|
lineage4.1.2.1
|
None
|
ERR10867591
|
MDR-TB
|
lineage4.2.1.1
|
None
|
ERR10868302
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR6397191
|
HR-TB
|
lineage4.2.2.2
|
None
|
SRR25827887
|
HR-TB
|
lineage3;lineage4.1.2.1
|
None
|
SRR16295736
|
Other
|
lineage2.2.1
|
None
|
ERR11243554
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR11243573
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR21277133
|
Sensitive
|
lineage2.2.1
|
None
|
SRR21576666
|
MDR-TB
|
lineage4.4.2
|
None
|
ERR2229325
|
Other
|
lineage4.8
|
dk
|
ERR4798850
|
Sensitive
|
lineage3
|
in
|
SRR28045593
|
Sensitive
|
lineage1.2.2.2
|
None
|
SRR16295815
|
Sensitive
|
lineage2.2.1
|
None
|
ERR7801296
|
HR-TB
|
lineage4.3.4.2.1
|
None
|
ERR6336692
|
MDR-TB
|
lineage1.2.1.2.1
|
None
|
ERR6336777
|
Sensitive
|
lineage1.2.1.2.1
|
None
|
ERR6397179
|
Sensitive
|
lineage4.2.2.2
|
None
|
ERR6397203
|
MDR-TB
|
lineage4.1.2.1
|
None
|
SRR12882350
|
Sensitive
|
lineage3.1.1
|
None
|
SRR12882196
|
Sensitive
|
lineage1.2.1.2
|
None
|
SRR12882428
|
Sensitive
|
lineage1.2.1.2.1
|
None
|
SRR21277022
|
Sensitive
|
lineage2.2.1
|
None
|
ERR6397197
|
Sensitive
|
lineage3
|
None
|
SRR22249829
|
Other
|
lineage1.2.2.2
|
None
|
ERR11465549
|
MDR-TB
|
lineage4.1.1.3
|
None
|
SRR17712078
|
Sensitive
|
lineage2.2.1
|
None
|
SRR28045588
|
Sensitive
|
lineage3
|
None
|
SRR28046159
|
Sensitive
|
lineage1.2.2.2
|
None
|
SRR28046160
|
Sensitive
|
lineage3.1.2
|
None
|
SRR28045602
|
HR-TB
|
lineage1.2.2.2
|
None
|
SRR28119762
|
Sensitive
|
lineage2.2.1
|
None
|
SRR28119819
|
Sensitive
|
lineage2.2.1
|
None
|
SRR1180320
|
Sensitive
|
lineage1.1.2;lineage1.1.3.3
|
None
|
SRR28119754
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR551446
|
Sensitive
|
lineage4.2.1
|
None
|
SRR28045603
|
Sensitive
|
lineage1.1.3.1
|
None
|
SRR28119825
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR28119738
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR28045587
|
Sensitive
|
lineage1.2.2.2
|
None
|
SRR27069395
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR28046157
|
Other
|
lineage3.1.2.1
|
None
|
SRR28119713
|
Other
|
lineage2.2.1
|
None
|
ERR12916928
|
XDR-TB
|
lineage4.3.3
|
None
|
ERR6336791
|
HR-TB
|
lineage1.2.1.2.1
|
None
|
ERR6336799
|
Other
|
lineage1.2.1.2.1
|
None
|
ERR6397207
|
MDR-TB
|
lineage4.2.2.2
|
None
|
SRR28119748
|
MDR-TB
|
lineage2.2.2
|
None
|
SRR28119775
|
Other
|
lineage2.2.1.2
|
None
|
ERR10873678
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR11466544
|
Sensitive
|
lineage4.8
|
None
|
ERR4132439
|
Sensitive
|
lineage4.8
|
None
|
SRR21277071
|
Sensitive
|
lineage2.2.1
|
None
|
ERR11243555
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR28119839
|
MDR-TB
|
lineage2.2.2
|
None
|
ERR11465927
|
Sensitive
|
lineage3.1.1
|
None
|
ERR11465635
|
Sensitive
|
lineage4.3.4.2.1
|
None
|
SAMN02599047
|
Sensitive
|
lineage1.1.2;lineage1.1.3.3
|
in
|
SRR28119739
|
Other
|
lineage2.2.1
|
None
|
SRR28646049
|
Sensitive
|
lineage4.8
|
None
|
SRR12212956
|
Other
|
lineage4.9
|
None
|
SRR12212964
|
Sensitive
|
lineage4.9
|
None
|
SRR12882111
|
Other
|
lineage1.2.1.2
|
None
|
SRR12882118
|
HR-TB
|
lineage1.2.1.2
|
None
|
SRR12882340
|
Sensitive
|
lineage3.1.1
|
None
|
ERR10868185
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR10869162
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR10877862
|
MDR-TB
|
lineage4.8
|
None
|
SRR21277134
|
Sensitive
|
lineage2.2.1.1
|
None
|
SRR28119788
|
Sensitive
|
lineage2.2.1
|
None
|
SRR28119720
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR2229698
|
Sensitive
|
lineage4.8
|
None
|
SRR25827673
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR6336688
|
Sensitive
|
lineage1.2.1.2.1
|
None
|
ERR6336730
|
HR-TB
|
lineage1.2.1.2.1
|
None
|
ERR6397186
|
Sensitive
|
lineage4.6.2.2
|
None
|
SRR28119797
|
Other
|
lineage2.2.1
|
None
|
SRR27241220
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR25056555
|
Sensitive
|
lineage4.9
|
None
|
SRR12882322
|
Sensitive
|
lineage3.1.1
|
None
|
SRR25827324
|
Pre-XDR-TB
|
lineage2.2.1;lineage3;lineage4
|
None
|
ERR10869423
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR5863978
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR11465451
|
Sensitive
|
lineage1.2.2.2
|
None
|
ERR11465982
|
Sensitive
|
lineage4.3.4.2.1
|
None
|
SRR16295780
|
Other
|
lineage2.2.1
|
None
|
ERR11465493
|
Sensitive
|
lineage4.3.4.1
|
None
|
ERR6336714
|
HR-TB
|
lineage1.2.1.2.1
|
None
|
ERR6336738
|
Sensitive
|
lineage1.2.1.2.1
|
None
|
ERR12916909
|
XDR-TB
|
lineage2.2.1
|
None
|
SRR18548986
|
Sensitive
|
lineage4.2.2
|
None
|
SRR12212962
|
Sensitive
|
lineage4.9
|
None
|
SRR12882689
|
Sensitive
|
lineage3
|
None
|
ERR11466530
|
Sensitive
|
lineage4.1.1.3
|
None
|
SRR12882535
|
Sensitive
|
lineage1.1.2
|
None
|
ERR6336773
|
Sensitive
|
lineage1.2.1.2.1
|
None
|
ERR6336776
|
Sensitive
|
lineage1.2.1.2.1
|
None
|
SRR21277095
|
Sensitive
|
lineage4.4.2
|
None
|
SRR21277107
|
Sensitive
|
lineage4.4
|
None
|
ERR2245388
|
Sensitive
|
lineage3.1.1
|
no
|
SRR28119740
|
Sensitive
|
lineage2.2.1
|
None
|
SRR18002965
|
Sensitive
|
lineage2.2.1
|
None
|
SRR25827424
|
MDR-TB
|
lineage1.1.2
|
None
|
ERR6397180
|
MDR-TB
|
lineage4.2.2.2
|
None
|
ERR11243569
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR21277352
|
Sensitive
|
lineage2.2.1
|
None
|
SRR14519103
|
Sensitive
|
lineage2.2.1
|
None
|
SRR18003003
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR10868818
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR25827517
|
Pre-XDR-TB
|
lineage3.1.2;lineage4.2.2.2;lineage4.3.3
|
None
|
ERR6336748
|
Sensitive
|
lineage1.2.1.2.1
|
None
|
SRR8237375
|
Sensitive
|
lineage2.2.1
|
ch
|
ERR4796864
|
Pre-XDR-TB
|
lineage4.8
|
in
|
ERR7801304
|
Sensitive
|
lineage4.3.4.2.1
|
None
|
ERR12545825
|
Sensitive
|
lineage4.2.1.1
|
None
|
ERR6336756
|
Sensitive
|
lineage1.2.1.2.1
|
None
|
SRR28045594
|
Sensitive
|
lineage1.2.2.2
|
None
|
SRR12882346
|
Sensitive
|
lineage3.1.1
|
None
|
ERR2245419
|
Sensitive
|
lineage3.1.1
|
no
|
ERR6336755
|
RR-TB
|
lineage1.2.1.2.1
|
None
|
SRR18002936
|
Sensitive
|
lineage2.2.1
|
None
|
SRR18003009
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR18003041
|
HR-TB
|
lineage2.2.1
|
None
|
ERR7801318
|
Sensitive
|
lineage4.4.1.1
|
None
|
ERR6336729
|
Sensitive
|
lineage1.2.1.2.1
|
None
|
SRR22249412
|
MDR-TB
|
lineage3
|
None
|
ERR6336743
|
RR-TB
|
lineage1.2.1.2.1
|
None
|
SRR6045099
|
Sensitive
|
lineage4.1.2.1
|
gb
|
SRR28239816
|
Sensitive
|
lineage4.1.2.1
|
None
|
SRR21277066
|
Sensitive
|
lineage2.2.1
|
None
|
SRR17703713
|
Sensitive
|
lineage2.2.1
|
None
|
ERR2229130
|
Sensitive
|
lineage4.8
|
None
|
SRR12006055
|
Sensitive
|
lineage4.9
|
None
|
SRR28119716
|
Other
|
lineage2.2.1
|
None
|
SRR28119803
|
Other
|
lineage2.2.1
|
None
|
ERR11464987
|
HR-TB
|
lineage4.3.2.1
|
None
|
SRR12882442
|
Sensitive
|
lineage1.2.1.2
|
None
|
SRR18002900
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR12882098
|
Sensitive
|
lineage1.2.1.2
|
None
|
ERR6336719
|
Sensitive
|
lineage1.2.1.2.1
|
None
|
ERR6336788
|
Sensitive
|
lineage1.2.1.2.1
|
None
|
SRR21277109
|
Sensitive
|
lineage2.2.1
|
None
|
ERR12916913
|
XDR-TB
|
lineage4.3.3
|
None
|
ERR6397154
|
MDR-TB
|
lineage4.2.2.2
|
None
|
ERR2229254
|
Sensitive
|
lineage4.8
|
dk
|
ERR6362029
|
MDR-TB
|
lineage4.1.1.3
|
None
|
ERR2229454
|
Sensitive
|
lineage4.8
|
dk
|
SRR21277339
|
Sensitive
|
lineage2.2.1.1
|
None
|
ERR11243556
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR12882119
|
HR-TB
|
lineage1.2.1.2
|
None
|
ERR6336768
|
Sensitive
|
lineage1.2.1.2.1
|
None
|
ERR6336731
|
Sensitive
|
lineage1.2.1.2
|
None
|
SRR28119773
|
Other
|
lineage2.2.1
|
None
|
SRR18289179
|
Sensitive
|
lineage2.2.1
|
None
|
ERR12916923
|
XDR-TB
|
lineage4.3.3
|
None
|
SRR25827492
|
Sensitive
|
lineage4.1.2.1
|
None
|
ERR12916919
|
XDR-TB
|
lineage2.2.1
|
None
|
ERR12916921
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR28045598
|
Sensitive
|
lineage1.1.2
|
None
|
SRR18548992
|
Sensitive
|
lineage4
|
None
|
SRR28119796
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR28119758
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR28119712
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR28119731
|
Other
|
lineage2.2.1
|
None
|
SRR28239498
|
HR-TB
|
lineage4.3.3
|
None
|
SRR28646104
|
MDR-TB
|
lineage4.8
|
None
|
ERR2245377
|
Sensitive
|
lineage3.1.1
|
no
|
ERR12549469
|
Sensitive
|
lineage4.3.3
|
None
|
SRR22249985
|
Sensitive
|
lineage2.2.1
|
None
|
ERR2517461
|
Sensitive
|
lineage4.6.1.2
|
nl
|
ERR2245414
|
Sensitive
|
lineage3.1.1
|
no
|
ERR2653040
|
Other
|
lineage4.1.1.1
|
None
|
ERR10869496
|
MDR-TB
|
lineage4.3.3
|
None
|
SRR14519107
|
Sensitive
|
lineage4.4.2
|
None
|
SRR30182453
|
Sensitive
|
lineage1.1.2
|
None
|
SRR1169513
|
Sensitive
|
lineage1.1.2;lineage1.1.3.3
|
None
|
ERR2653179
|
MDR-TB
|
lineage4.1.2.1
|
None
|
ERR4896322
|
Sensitive
|
lineage2.2.1.1;lineage4.1.2.1
|
None
|
ERR6336701
|
HR-TB
|
lineage1.2.1.2.1
|
None
|
ERR6336708
|
Sensitive
|
lineage1.2.1.2.1
|
None
|
ERR6397148
|
Sensitive
|
lineage3
|
None
|
ERR7801309
|
Sensitive
|
lineage4.3.4.2.1
|
None
|
SRR12882105
|
Sensitive
|
lineage1.2.1.2
|
None
|
SRR12882343
|
Sensitive
|
lineage1.1.3.2
|
None
|
ERR10877891
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR5336145
|
Sensitive
|
lineage6.3.1
|
None
|
ERR553070
|
Sensitive
|
lineage4.8.3
|
None
|
SRR21277006
|
Sensitive
|
lineage2.2.1
|
None
|
SRR21277108
|
Sensitive
|
lineage2.2.1
|
None
|
SRR21277297
|
Sensitive
|
lineage2.2.1
|
None
|
SRR25827826
|
Sensitive
|
lineage1.1.2
|
None
|
ERR12544390
|
RR-TB
|
lineage4.2.1.1
|
None
|
SRR25827479
|
XDR-TB
|
lineage1.2.2.2;lineage2.2.1
|
None
|
SRR25827620
|
XDR-TB
|
lineage2.2.1
|
None
|
ERR6336698
|
HR-TB
|
lineage1.2.1.2.1
|
None
|
ERR6336737
|
Sensitive
|
lineage1.2.1.2.1
|
None
|
SRR16295785
|
Other
|
lineage2.2.1
|
None
|
SRR21277042
|
Sensitive
|
lineage4.2.2
|
None
|
SRR21277069
|
Sensitive
|
lineage2.2.1
|
None
|
SRR18002902
|
Sensitive
|
lineage2.2.1
|
None
|
ERR2653011
|
Sensitive
|
lineage4.1.1.3
|
None
|
SRR18003039
|
Sensitive
|
lineage2.2.1
|
None
|
SRR18002962
|
Sensitive
|
lineage2.2.1
|
None
|
SRR18003026
|
Sensitive
|
lineage2.2.1
|
None
|
ERR10868625
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
ERR6336775
|
Sensitive
|
lineage1.2.1.2.1
|
None
|
ERR11243557
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR28119733
|
Sensitive
|
lineage2.2.1
|
None
|
SRR28119786
|
MDR-TB
|
lineage2.2.2
|
None
|
SRR25827756
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR28119749
|
RR-TB
|
lineage2.2.1
|
None
|
SRR29538968
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR21277075
|
Sensitive
|
lineage2.2.1
|
None
|
SRR21277093
|
Sensitive
|
lineage2.2.1.1
|
None
|
SRR12882463
|
Sensitive
|
lineage1.1.2
|
None
|
ERR2245423
|
Sensitive
|
lineage3.1.1
|
no
|
ERR13260927
|
Sensitive
|
lineage2.2.1
|
None
|
SRR28119818
|
MDR-TB
|
lineage2.2.2
|
None
|
SRR28119779
|
Other
|
lineage2.2.2
|
None
|
SRR21277633
|
HR-TB
|
lineage2.2.1.1
|
None
|
ERR6336787
|
Sensitive
|
lineage1.2.1.2.1
|
None
|
ERR6397172
|
MDR-TB
|
lineage4.1.2.1
|
None
|
ERR6397151
|
MDR-TB
|
lineage4.2.2.2
|
None
|
ERR11466088
|
Sensitive
|
lineage4.8
|
None
|
SRR28119722
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR21277332
|
Other
|
lineage4.2.2
|
None
|
SRR23961613
|
Other
|
La1.2
|
None
|
ERR6336783
|
HR-TB
|
lineage1.2.1.2.1
|
None
|
ERR11465929
|
RR-TB
|
lineage3
|
None
|
ERR2229395
|
Sensitive
|
lineage4.8
|
None
|
SRR9166038
|
HR-TB
|
lineage4.9
|
None
|
SRR21277305
|
Sensitive
|
lineage2.2.1.1
|
None
|
ERR10877865
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR6397155
|
HR-TB
|
lineage3
|
None
|
ERR6397208
|
Sensitive
|
lineage3
|
None
|
ERR3275268
|
Sensitive
|
lineage4.1
|
nl
|
ERR552675
|
Sensitive
|
lineage4.8.3
|
None
|
ERR11464964
|
Sensitive
|
lineage4.3.4.2.1
|
None
|
SRR18003034
|
Sensitive
|
lineage2.2.1
|
None
|
SRR25827622
|
XDR-TB
|
lineage2.2.1
|
None
|
ERR551533
|
HR-TB
|
lineage2.2.1
|
de
|
ERR6336697
|
Sensitive
|
lineage1.2.1.2.1
|
None
|
ERR2229318
|
Sensitive
|
lineage4.8
|
dk
|
SRR12882670
|
Sensitive
|
lineage3.1.1
|
None
|
ERR10869438
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR13258711
|
Sensitive
|
lineage2.2.1
|
None
|
SRR25827359
|
Pre-XDR-TB
|
lineage2.2.1;lineage3;lineage4.8
|
None
|
ERR2515403
|
Sensitive
|
lineage4.1.2.1
|
za
|
ERR6397215
|
Sensitive
|
lineage4.2.2.2
|
None
|
ERR5336164
|
Sensitive
|
lineage6.3.2
|
None
|
ERR11464971
|
Sensitive
|
lineage4.1.1.3
|
None
|
ERR6397194
|
Sensitive
|
lineage4.2.2.2
|
None
|
SRR28119783
|
Sensitive
|
lineage2.2.1
|
None
|
SRR28239879
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR11465971
|
Sensitive
|
lineage4.3.4.2.1
|
None
|
ERR10867785
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR28119778
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
SRR12882093
|
Sensitive
|
lineage1.2.1.2
|
None
|
SRR12882109
|
Sensitive
|
lineage1.2.1.2
|
None
|
SRR12882662
|
Sensitive
|
lineage1.1.2
|
None
|
ERR11465528
|
Sensitive
|
lineage4.3.4.2.1
|
None
|
SRR25827357
|
XDR-TB
|
lineage1.1.2;lineage2.2.1;lineage3
|
None
|
SRR18002890
|
MDR-TB
|
lineage4.4.2
|
None
|
ERR551143
|
Sensitive
|
lineage4.7
|
de
|
SRR18002994
|
MDR-TB
|
lineage4.2.2
|
None
|
ERR11465372
|
Sensitive
|
lineage4.3.4.2.1
|
None
|
SRR28119709
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR6336780
|
RR-TB
|
lineage1.2.1.2.1
|
None
|
ERR6397162
|
Sensitive
|
lineage4.2.2.2
|
None
|
ERR2229382
|
Sensitive
|
lineage4.8
|
None
|
ERR6397175
|
Sensitive
|
lineage4.3.3
|
None
|
ERR2120285
|
Other
|
lineage4.6.5
|
None
|
SRR21277041
|
Sensitive
|
lineage2.2.1
|
None
|
ERR6336786
|
MDR-TB
|
lineage1.2.1.2.1
|
None
|
ERR10869436
|
MDR-TB
|
lineage4.3.3
|
None
|
SRR25827789
|
MDR-TB
|
lineage2.2.1;lineage4.1.2.1
|
None
|
SRR18003010
|
MDR-TB
|
lineage2.2.1.1
|
None
|
SRR25827366
|
XDR-TB
|
lineage2.2.1
|
None
|
SRR3743200
|
Pre-XDR-TB
|
lineage4.4.1.1
|
None
|
ERR6362545
|
Pre-XDR-TB
|
lineage4.4.1.1
|
None
|
ERR7801312
|
Sensitive
|
lineage2.2.1
|
None
|
ERR1465864
|
RR-TB
|
lineage4.8
|
None
|
SRR12882664
|
Sensitive
|
lineage3
|
None
|
ERR6397189
|
Sensitive
|
lineage4.1.1.3
|
None
|
ERR10877866
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR12790856
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR28045097
|
Sensitive
|
lineage1.1.2
|
None
|
ERR12916908
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR28119813
|
Sensitive
|
lineage2.2.1
|
None
|
SRR28045586
|
Other
|
lineage1.2.2.1
|
None
|
SRR18002880
|
RR-TB
|
lineage2.2.1
|
None
|
SRR18002970
|
Sensitive
|
lineage2.2.1
|
None
|
SRR28119725
|
HR-TB
|
lineage2.2.2
|
None
|
SRR28119737
|
Other
|
lineage2.2.1
|
None
|
SRR28044958
|
Pre-XDR-TB
|
lineage3
|
None
|
ERR6336707
|
Sensitive
|
lineage1.2.1.2.1
|
None
|
ERR6336771
|
Sensitive
|
lineage1.2.1.2.1
|
None
|
ERR6336718
|
Sensitive
|
lineage3
|
None
|
ERR7801291
|
Sensitive
|
lineage4.3.3
|
None
|
SRR18002898
|
RR-TB
|
lineage2.2.1
|
None
|
SRR18002899
|
RR-TB
|
lineage2.2.1
|
None
|
ERR11466589
|
Sensitive
|
lineage4.3.4.2.1
|
None
|
SRR18002897
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR18500607
|
Sensitive
|
lineage4.4.2
|
None
|
SRR18548955
|
Sensitive
|
lineage4.5
|
None
|
SRR6485121
|
Sensitive
|
lineage4.3.3
|
None
|
ERR1465884
|
Sensitive
|
lineage4.7
|
None
|
SRR12882100
|
Sensitive
|
lineage1.2.1.2
|
None
|
SRR12882201
|
Other
|
lineage1.2.1.2
|
None
|
SRR17712107
|
Sensitive
|
lineage2.2.1
|
None
|
SRR18002888
|
RR-TB
|
lineage2.2.1
|
None
|
SRR12882431
|
Sensitive
|
lineage1.2.1.2
|
None
|
SRR16295828
|
Other
|
lineage2.2.1
|
None
|
SRR21277321
|
HR-TB
|
lineage2.2.1
|
None
|
ERR11465537
|
HR-TB
|
lineage1.2.2.2
|
None
|
ERR11465193
|
Sensitive
|
lineage4.1.1.3
|
None
|
ERR5336143
|
Sensitive
|
lineage5.3
|
None
|
ERR5336154
|
Sensitive
|
lineage6.1.1
|
None
|
ERR11465926
|
Sensitive
|
lineage4.3.4.1
|
None
|
ERR2245426
|
Sensitive
|
lineage3.1.1
|
no
|
ERR2229347
|
Sensitive
|
lineage4.8
|
dk
|
SRR28045600
|
Sensitive
|
lineage3.1.2.1
|
None
|
SRR12882443
|
Other
|
lineage1.2.1.2
|
None
|
SRR12882440
|
Sensitive
|
lineage1.2.1.2
|
None
|
SRR18548957
|
RR-TB
|
lineage4.4.2
|
None
|
SRR28119826
|
Other
|
lineage2.2.1
|
None
|
SRR28045589
|
Sensitive
|
lineage4.2.2
|
None
|
SRR21700820
|
HR-TB
|
lineage4.9
|
None
|
ERR13261302
|
Sensitive
|
lineage1.1.2
|
None
|
ERR4827430
|
Sensitive
|
lineage4.1.2.1
|
None
|
ERR7801327
|
Sensitive
|
lineage4.3.4.2
|
None
|
ERR2653171
|
Pre-XDR-TB
|
lineage4.3.4.2
|
None
|
ERR552185
|
Sensitive
|
lineage4.8
|
None
|
SRR21277585
|
HR-TB
|
lineage4.5
|
None
|
SRR28119755
|
Sensitive
|
lineage2.2.1
|
None
|
ERR6336797
|
Sensitive
|
lineage1.2.1.2.1
|
None
|
ERR10867788
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR11243572
|
MDR-TB
|
lineage4.8
|
None
|
SRR28119728
|
HR-TB
|
lineage4.5
|
None
|
SRR28119723
|
Sensitive
|
lineage2.2.1
|
None
|
ERR6397181
|
Sensitive
|
lineage4.1.2.1
|
None
|
SRR12882099
|
Sensitive
|
lineage1.2.1.2
|
None
|
ERR11464968
|
Sensitive
|
lineage4.3.4.2.1
|
None
|
ERR12916927
|
XDR-TB
|
lineage4.3.3
|
None
|
SRR12882108
|
Sensitive
|
lineage1.2.1.2
|
None
|
ERR12544388
|
Sensitive
|
lineage4.8
|
None
|
SRR18054775
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR11465529
|
Sensitive
|
lineage4.3.4.2.1
|
None
|
SRR25827342
|
Pre-XDR-TB
|
lineage4.8
|
None
|
SRR25827376
|
Pre-XDR-TB
|
lineage2.2.1;lineage3
|
None
|
SRR12882348
|
Sensitive
|
lineage3.1.1
|
None
|
ERR11466573
|
Sensitive
|
lineage4.1.1.3
|
None
|
ERR4815240
|
Sensitive
|
lineage4.9
|
None
|
ERR7801317
|
HR-TB
|
lineage4.3.4.2.1
|
None
|
ERR8975101
|
Sensitive
|
lineage2.2.1
|
None
|
SRR25827645
|
Pre-XDR-TB
|
lineage2.2.1.1
|
None
|
ERR2245393
|
Sensitive
|
lineage3.1.1
|
no
|
ERR6336760
|
Sensitive
|
lineage1.2.1.2.1
|
None
|
ERR6397178
|
MDR-TB
|
lineage4.2.2.2
|
None
|
ERR12545827
|
RR-TB
|
lineage2.2.1
|
None
|
ERR10877877
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR25827480
|
Pre-XDR-TB
|
lineage2.2.1.2
|
None
|
ERR6336695
|
Other
|
lineage1.2.1.2.1
|
None
|
ERR6336723
|
Sensitive
|
lineage1.2.1.2.1
|
None
|
ERR6336769
|
HR-TB
|
lineage1.2.1.2.1
|
None
|
SRR28119830
|
MDR-TB
|
lineage2.2.2
|
None
|
ERR6336793
|
Sensitive
|
lineage1.2.1.2.1
|
None
|
SRR12882469
|
Sensitive
|
lineage1.1.2
|
None
|
ERR6397171
|
MDR-TB
|
lineage4.2.2.2
|
None
|
SRR25827341
|
Pre-XDR-TB
|
lineage3.1.2;lineage4.3.3
|
None
|
ERR10877893
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR11466572
|
Sensitive
|
lineage4.8
|
None
|
ERR11243565
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR3276070
|
Sensitive
|
lineage3.1.1
|
nl
|
ERR3276064
|
Pre-XDR-TB
|
lineage4.1.2.1
|
nl
|
ERR6397157
|
Sensitive
|
lineage3
|
None
|
ERR6336702
|
Sensitive
|
lineage1.2.1.2.1
|
None
|
SRR28119746
|
Sensitive
|
lineage2.2.1
|
None
|
SRR26800474
|
Sensitive
|
lineage3
|
None
|
SRR25827667
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR6397206
|
MDR-TB
|
lineage3
|
None
|
SRR28119837
|
HR-TB
|
lineage2.2.1
|
None
|
ERR6336798
|
Sensitive
|
lineage1.2.1.2.1
|
None
|
SRR14088376
|
MDR-TB
|
lineage3
|
None
|
SRR28119763
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR6336739
|
HR-TB
|
lineage1.2.1.2.1
|
None
|
ERR6336746
|
RR-TB
|
lineage1.2.1.2.1
|
None
|
ERR6336772
|
Sensitive
|
lineage1.2.1.2.1
|
None
|
SRR12882332
|
Sensitive
|
lineage3.1.2
|
None
|
SRR18500614
|
Sensitive
|
lineage2.2.1
|
None
|