Run ID: ERR6336784
Sample name:
Date: 02-04-2023 02:03:23
Number of reads: 2437264
Percentage reads mapped: 94.98
Strain: lineage1.2.1.2
Drug-resistance: Sensitive
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage1 | Indo-Oceanic | EAI | RD239 | 1.0 |
lineage1.2.1 | Indo-Oceanic | EAI2 | RD239 | 1.0 |
lineage1.2.1.2 | Indo-Oceanic | NA | RD239 | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrB | 6112 | p.Met291Ile | missense_variant | 1.0 |
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
gyrA | 7585 | p.Ser95Thr | missense_variant | 1.0 |
gyrA | 8452 | p.Ala384Val | missense_variant | 1.0 |
gyrA | 9126 | p.Ala609Thr | missense_variant | 1.0 |
gyrA | 9143 | c.1842T>C | synonymous_variant | 1.0 |
gyrA | 9260 | c.1959G>C | synonymous_variant | 1.0 |
gyrA | 9304 | p.Gly668Asp | missense_variant | 1.0 |
fgd1 | 491742 | c.960T>C | synonymous_variant | 1.0 |
mshA | 575368 | c.21T>C | synonymous_variant | 1.0 |
mshA | 576108 | p.Ala254Gly | missense_variant | 0.23 |
rpoC | 763031 | c.-339T>C | upstream_gene_variant | 1.0 |
rpoC | 763531 | c.162G>C | synonymous_variant | 1.0 |
rpoC | 763884 | p.Ala172Val | missense_variant | 1.0 |
rpoC | 763886 | c.517C>A | synonymous_variant | 1.0 |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 1.0 |
mmpL5 | 776100 | p.Thr794Ile | missense_variant | 1.0 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
embR | 1417019 | p.Cys110Tyr | missense_variant | 1.0 |
atpE | 1460907 | c.-138T>C | upstream_gene_variant | 1.0 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
rrs | 1472541 | n.696T>G | non_coding_transcript_exon_variant | 0.12 |
rrs | 1472544 | n.699C>G | non_coding_transcript_exon_variant | 0.12 |
rrs | 1472545 | n.700A>T | non_coding_transcript_exon_variant | 0.12 |
rrs | 1472557 | n.712G>A | non_coding_transcript_exon_variant | 0.12 |
rrs | 1472570 | n.725G>A | non_coding_transcript_exon_variant | 0.12 |
rrs | 1472571 | n.726G>C | non_coding_transcript_exon_variant | 0.13 |
rrs | 1472573 | n.728C>T | non_coding_transcript_exon_variant | 0.12 |
rrs | 1472579 | n.734G>C | non_coding_transcript_exon_variant | 0.12 |
rrs | 1472598 | n.753A>C | non_coding_transcript_exon_variant | 0.13 |
rrs | 1472616 | n.771G>A | non_coding_transcript_exon_variant | 0.13 |
rrl | 1474732 | n.1075A>G | non_coding_transcript_exon_variant | 1.0 |
rrl | 1474777 | n.1120T>C | non_coding_transcript_exon_variant | 0.13 |
rrl | 1474779 | n.1122G>A | non_coding_transcript_exon_variant | 0.13 |
rrl | 1474780 | n.1123C>T | non_coding_transcript_exon_variant | 0.13 |
rrl | 1474784 | n.1127C>T | non_coding_transcript_exon_variant | 0.17 |
rrl | 1474790 | n.1133C>T | non_coding_transcript_exon_variant | 0.18 |
rrl | 1474794 | n.1137C>G | non_coding_transcript_exon_variant | 0.23 |
rrl | 1474798 | n.1141C>T | non_coding_transcript_exon_variant | 0.24 |
rrl | 1474804 | n.1147C>T | non_coding_transcript_exon_variant | 0.33 |
rrl | 1474823 | n.1166C>G | non_coding_transcript_exon_variant | 0.38 |
rrl | 1474827 | n.1170C>T | non_coding_transcript_exon_variant | 0.37 |
rrl | 1474830 | n.1173A>T | non_coding_transcript_exon_variant | 0.39 |
rrl | 1474831 | n.1174A>C | non_coding_transcript_exon_variant | 0.39 |
rrl | 1474844 | n.1187G>T | non_coding_transcript_exon_variant | 0.35 |
rrl | 1474864 | n.1207C>T | non_coding_transcript_exon_variant | 0.32 |
rrl | 1474866 | n.1209C>A | non_coding_transcript_exon_variant | 0.3 |
rrl | 1474869 | n.1212G>T | non_coding_transcript_exon_variant | 0.31 |
rrl | 1474896 | n.1239A>G | non_coding_transcript_exon_variant | 0.18 |
rrl | 1474902 | n.1245T>C | non_coding_transcript_exon_variant | 0.14 |
rrl | 1474904 | n.1247G>C | non_coding_transcript_exon_variant | 0.13 |
rrl | 1475803 | n.2146T>C | non_coding_transcript_exon_variant | 0.11 |
rrl | 1475804 | n.2147G>C | non_coding_transcript_exon_variant | 0.11 |
rrl | 1475816 | n.2159C>G | non_coding_transcript_exon_variant | 0.11 |
rrl | 1475817 | n.2160A>G | non_coding_transcript_exon_variant | 0.1 |
rrl | 1476251 | n.2594T>G | non_coding_transcript_exon_variant | 0.12 |
rrl | 1476256 | n.2599A>G | non_coding_transcript_exon_variant | 0.11 |
rrl | 1476332 | n.2675G>C | non_coding_transcript_exon_variant | 0.17 |
rrl | 1476338 | n.2681C>T | non_coding_transcript_exon_variant | 0.22 |
rrl | 1476353 | n.2696G>T | non_coding_transcript_exon_variant | 0.21 |
rrl | 1476358 | n.2701T>C | non_coding_transcript_exon_variant | 0.26 |
rrl | 1476372 | n.2715T>C | non_coding_transcript_exon_variant | 0.34 |
rrl | 1476382 | n.2725A>G | non_coding_transcript_exon_variant | 0.32 |
rrl | 1476383 | n.2726T>A | non_coding_transcript_exon_variant | 0.34 |
rrl | 1476408 | n.2751G>A | non_coding_transcript_exon_variant | 0.37 |
rrl | 1476425 | n.2768G>A | non_coding_transcript_exon_variant | 0.37 |
rrl | 1476428 | n.2771C>T | non_coding_transcript_exon_variant | 0.34 |
rrl | 1476466 | n.2809C>T | non_coding_transcript_exon_variant | 0.31 |
rrl | 1476481 | n.2824T>C | non_coding_transcript_exon_variant | 0.25 |
rrl | 1476506 | n.2849T>C | non_coding_transcript_exon_variant | 0.16 |
rrl | 1476512 | n.2855C>T | non_coding_transcript_exon_variant | 0.16 |
rrl | 1476514 | n.2857C>T | non_coding_transcript_exon_variant | 0.15 |
rrl | 1476519 | n.2862C>G | non_coding_transcript_exon_variant | 0.14 |
rrl | 1476523 | n.2866T>C | non_coding_transcript_exon_variant | 0.14 |
rrl | 1476524 | n.2867C>A | non_coding_transcript_exon_variant | 0.14 |
rrl | 1476525 | n.2868A>G | non_coding_transcript_exon_variant | 0.14 |
rrl | 1476530 | n.2873C>T | non_coding_transcript_exon_variant | 0.15 |
rrl | 1476536 | n.2879G>A | non_coding_transcript_exon_variant | 0.15 |
rrl | 1476537 | n.2880A>G | non_coding_transcript_exon_variant | 0.15 |
rrl | 1476538 | n.2881A>G | non_coding_transcript_exon_variant | 0.15 |
rrl | 1476540 | n.2883C>G | non_coding_transcript_exon_variant | 0.14 |
rrl | 1476547 | n.2890C>T | non_coding_transcript_exon_variant | 0.15 |
rrl | 1476567 | n.2910C>T | non_coding_transcript_exon_variant | 0.18 |
rrl | 1476573 | n.2916A>T | non_coding_transcript_exon_variant | 0.16 |
rrl | 1476577 | n.2920T>G | non_coding_transcript_exon_variant | 0.16 |
rrl | 1476584 | n.2927C>T | non_coding_transcript_exon_variant | 0.14 |
rrl | 1476594 | n.2937C>T | non_coding_transcript_exon_variant | 0.16 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
katG | 2154724 | p.Arg463Leu | missense_variant | 1.0 |
PPE35 | 2167926 | p.Leu896Ser | missense_variant | 1.0 |
Rv1979c | 2222308 | p.Asp286Gly | missense_variant | 0.98 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
kasA | 2518132 | c.18C>T | synonymous_variant | 1.0 |
kasA | 2519048 | p.Gly312Ser | missense_variant | 1.0 |
ahpC | 2726051 | c.-142G>A | upstream_gene_variant | 1.0 |
ald | 3086788 | c.-32T>C | upstream_gene_variant | 1.0 |
fbiD | 3339417 | c.300A>G | synonymous_variant | 1.0 |
fbiD | 3339734 | p.Ala206Gly | missense_variant | 0.15 |
Rv3083 | 3448714 | p.Asp71His | missense_variant | 1.0 |
fprA | 3473996 | c.-11_-10insA | upstream_gene_variant | 1.0 |
fprA | 3474597 | c.591C>A | synonymous_variant | 1.0 |
fprA | 3475159 | p.Asn385Asp | missense_variant | 1.0 |
whiB7 | 3568488 | c.191delG | frameshift_variant | 1.0 |
fbiB | 3640557 | c.-978T>C | upstream_gene_variant | 1.0 |
clpC1 | 4040517 | p.Val63Ala | missense_variant | 1.0 |
embC | 4240671 | p.Thr270Ile | missense_variant | 1.0 |
embC | 4241042 | p.Asn394Asp | missense_variant | 1.0 |
embA | 4242643 | c.-590C>T | upstream_gene_variant | 1.0 |
embA | 4243580 | c.348G>A | synonymous_variant | 1.0 |
embA | 4244420 | c.1188G>C | synonymous_variant | 1.0 |
embA | 4245969 | p.Pro913Ser | missense_variant | 1.0 |
embB | 4246544 | p.Thr11Pro | missense_variant | 0.28 |
embB | 4246548 | p.Pro12Gln | missense_variant | 0.35 |
embB | 4246555 | c.42G>C | synonymous_variant | 0.27 |
embB | 4246556 | p.Ala15Pro | missense_variant | 0.27 |
embB | 4246563 | p.Leu17Trp | missense_variant | 0.26 |
embB | 4246567 | c.54G>T | synonymous_variant | 0.22 |
embB | 4247578 | c.1065G>A | synonymous_variant | 1.0 |
embB | 4247646 | p.Glu378Ala | missense_variant | 1.0 |
ubiA | 4269387 | p.Glu149Asp | missense_variant | 1.0 |
aftB | 4269606 | c.-770T>C | upstream_gene_variant | 1.0 |
whiB6 | 4338361 | p.Arg54Gln | missense_variant | 1.0 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |
whiB6 | 4338603 | c.-82C>T | upstream_gene_variant | 1.0 |
gid | 4407588 | c.615A>G | synonymous_variant | 1.0 |
gid | 4407873 | c.330G>T | synonymous_variant | 1.0 |