Rv1221 - c.354C>T
Note: the variant has been searched for in a non-representative convenience
dataset of samples from the ENA. This sampleset may contain overrepresentation
in certain categories such as geographic source, drug resistance type and
lineage. Interpretation of variant frequencies should be performed cautiously
with this in mind.
Drug resistance types
122 Sensitive
2 RR-TB
44 HR-TB
22 MDR-TB
0 Pre-XDR-TB
0 XDR-TB
20 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage1.2.1.2 | 190 |
| La1.6;La3;M.canetti;lineage2.1;lineage4.9 | 1 |
| lineage4.9 | 4 |
| La1.6;La3;lineage4.6.4;lineage4.8.1;lineage4.9 | 1 |
| lineage1.2.1.2.1 | 3 |
| La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.9 | 1 |
| La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 | 4 |
| 1 | |
| La1.6;La3;M.canetti;lineage4.6.4;lineage4.9 | 1 |
| lineage2.2.1 | 1 |
| La1.6;La3;lineage4.6.4;lineage4.9 | 1 |
| La1.6;La3;M.canetti;lineage4.8.1;lineage4.9 | 1 |
| La1.6;La3;lineage4.9 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 210 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR27450180 | Sensitive | lineage1.2.1.2 | None | SRR28868626 | HR-TB | lineage1.2.1.2 | None | ERR10465817 | Sensitive | lineage1.2.1.2 | None | SRR16058295 | Sensitive | lineage1.2.1.2 | None | ERR4817940 | HR-TB | lineage1.2.1.2 | None | SRR28858365 | Sensitive | lineage1.2.1.2 | None | SRR7131172 | Sensitive | lineage1.2.1.2 | None | ERR3283020 | HR-TB | La1.6;La3;M.canetti;lineage2.1;lineage4.9 | None | ERR7902645 | Sensitive | lineage1.2.1.2 | None | SRR12006624 | HR-TB | lineage1.2.1.2 | None | SRR22250201 | HR-TB | lineage1.2.1.2 | None | SRR29126259 | Sensitive | lineage1.2.1.2 | None | SRR28170710 | Sensitive | lineage1.2.1.2 | None | SRR12006600 | Sensitive | lineage1.2.1.2 | None | SRR5341308 | Sensitive | lineage4.9 | None | SRR29440759 | Sensitive | lineage1.2.1.2 | None | SRR28859854 | Sensitive | lineage1.2.1.2 | None | ERR11067726 | Other | lineage1.2.1.2 | None | ERR6336801 | HR-TB | lineage1.2.1.2 | None | ERR13289755 | HR-TB | lineage1.2.1.2 | None | SRR29080984 | RR-TB | lineage1.2.1.2 | None | ERR13285350 | Other | lineage1.2.1.2 | None | SRR29440674 | Sensitive | lineage1.2.1.2 | None | SRR3675234 | Other | La1.6;La3;lineage4.6.4;lineage4.8.1;lineage4.9 | None | SRR22249910 | Sensitive | lineage1.2.1.2 | None | SRR29341504 | Sensitive | lineage1.2.1.2 | None | SRR29341563 | Sensitive | lineage1.2.1.2 | None | ERR6336731 | Sensitive | lineage1.2.1.2 | None | ERR11775971 | MDR-TB | lineage1.2.1.2 | None | SRR6397936 | HR-TB | lineage1.2.1.2 | ca | SRR6397526 | HR-TB | lineage1.2.1.2.1 | ca | ERR11081422 | Sensitive | lineage1.2.1.2 | None | ERR9125415 | Sensitive | lineage1.2.1.2 | None | DRR034486 | Sensitive | lineage1.2.1.2 | None | SRR16058332 | Sensitive | lineage1.2.1.2 | None | ERR4815146 | Sensitive | lineage1.2.1.2 | gb | ERR4816415 | Sensitive | lineage1.2.1.2 | gb | ERR4816486 | Sensitive | lineage1.2.1.2 | gb | SRR6045900 | HR-TB | lineage1.2.1.2 | gb | SRR6045734 | HR-TB | lineage1.2.1.2 | gb | SRR5817479 | MDR-TB | lineage1.2.1.2 | au | ERR6336796 | HR-TB | lineage1.2.1.2 | None | ERR4829300 | Sensitive | lineage1.2.1.2 | None | SRR16058301 | Sensitive | lineage1.2.1.2 | None | SRR22251431 | Sensitive | lineage1.2.1.2 | None | SRR21727888 | Sensitive | lineage1.2.1.2 | None | SRR27450422 | Sensitive | lineage1.2.1.2 | None | ERR9125292 | Sensitive | lineage1.2.1.2 | None | ERR3797044 | Other | La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.9 | None | ERR13249442 | Sensitive | lineage1.2.1.2 | None | DRR130082 | MDR-TB | lineage1.2.1.2 | None | DRR188946 | Sensitive | lineage1.2.1.2 | None | ERR13254217 | MDR-TB | lineage1.2.1.2 | None | ERR3797017 | HR-TB | La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 | None | ERR13292313 | Sensitive | lineage1.2.1.2 | None | ERR13292355 | HR-TB | lineage1.2.1.2 | None | ERR9125688 | Sensitive | lineage1.2.1.2 | None | ERR9125863 | Sensitive | lineage1.2.1.2 | None | ERR3256273 | HR-TB | lineage1.2.1.2 | ph | ERR9125362 | Sensitive | lineage1.2.1.2 | None | SRR16057997 | Sensitive | lineage1.2.1.2 | None | SRR16058202 | Sensitive | lineage1.2.1.2 | None | SRR16058471 | Sensitive | lineage1.2.1.2 | None | SRR16058679 | MDR-TB | lineage1.2.1.2 | None | SRR16089896 | Sensitive | lineage1.2.1.2 | None | SRR21663279 | Sensitive | lineage1.2.1.2 | None | SRR29052853 | Sensitive | lineage1.2.1.2 | None | SRR29056255 | Sensitive | lineage1.2.1.2 | None | SRR22249420 | HR-TB | lineage1.2.1.2 | None | SRR29053096 | Sensitive | lineage1.2.1.2 | None | ERR13272950 | Sensitive | lineage1.2.1.2 | None | SRR21733323 | Sensitive | lineage1.2.1.2 | None | SRR29126394 | Sensitive | lineage1.2.1.2 | None | SRR29440593 | HR-TB | lineage1.2.1.2 | None | SRR16058320 | Sensitive | lineage1.2.1.2 | None | SRR12882734 | HR-TB | lineage1.2.1.2 | None | SRR28858687 | Sensitive | lineage1.2.1.2 | None | SRR29440758 | Sensitive | lineage1.2.1.2 | None | ERR2513290 | Sensitive | lineage1.2.1.2 | None | SRR28858467 | HR-TB | lineage1.2.1.2 | None | SRR12006625 | Sensitive | lineage1.2.1.2 | None | SRR22251770 | Sensitive | lineage1.2.1.2 | None | SRR30182426 | Sensitive | lineage1.2.1.2 | None | SRR12006550 | Sensitive | None | SRR21689818 | Other | lineage1.2.1.2 | None | ERR7362034 | MDR-TB | lineage1.2.1.2 | None | ERR11082729 | MDR-TB | lineage1.2.1.2 | None | SRR16058027 | Sensitive | lineage1.2.1.2 | None | SRR29126991 | Sensitive | lineage1.2.1.2 | None | SRR21732893 | Sensitive | lineage1.2.1.2 | None | SRR21689967 | Sensitive | lineage1.2.1.2 | None | ERR9657198 | Sensitive | lineage1.2.1.2 | None | ERR13259983 | MDR-TB | lineage1.2.1.2 | None | ERR9124913 | Sensitive | lineage1.2.1.2 | None | SRR16058047 | Sensitive | lineage1.2.1.2 | None | ERR6336784 | Sensitive | lineage1.2.1.2 | None | ERR7361935 | HR-TB | lineage1.2.1.2 | None | SRR19320501 | Sensitive | lineage1.2.1.2 | None | SRR7131243 | HR-TB | lineage1.2.1.2 | None | SRR29127015 | Sensitive | lineage1.2.1.2 | None | SRR30182358 | HR-TB | lineage1.2.1.2 | None | SRR30182835 | Sensitive | lineage1.2.1.2 | None | SRR29127025 | Other | lineage1.2.1.2 | None | SRR19128051 | Sensitive | lineage1.2.1.2 | None | ERR4822230 | Other | lineage1.2.1.2 | None | SRR30336514 | Sensitive | lineage1.2.1.2 | None | SRR12006713 | Sensitive | lineage1.2.1.2 | None | SRR30182833 | MDR-TB | lineage1.2.1.2 | None | SRR5341299 | HR-TB | lineage4.9 | None | SRR28045010 | Sensitive | lineage1.2.1.2 | None | ERR3797014 | Other | La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 | None | SRR21733024 | Sensitive | lineage1.2.1.2 | None | SRR6152806 | Sensitive | lineage1.2.1.2 | ca | SRR6397949 | MDR-TB | lineage1.2.1.2 | ca | SRR6152646 | HR-TB | lineage1.2.1.2 | ca | SRR6152741 | Sensitive | lineage1.2.1.2 | ca | SRR6152774 | Sensitive | lineage1.2.1.2 | ca | SRR28045172 | Sensitive | lineage1.2.1.2 | None | ERR550956 | HR-TB | lineage1.2.1.2 | de | ERR2516771 | MDR-TB | lineage1.2.1.2 | gb | ERR2513230 | Sensitive | lineage1.2.1.2 | gb | SRR12006517 | Sensitive | lineage1.2.1.2 | None | ERR11775962 | Sensitive | lineage1.2.1.2 | None | SRR22251473 | Other | lineage1.2.1.2 | None | SRR21690685 | Sensitive | lineage1.2.1.2 | None | SRR22048346 | Sensitive | lineage1.2.1.2 | None | SRR30182879 | Other | lineage1.2.1.2 | None | ERR9125404 | Sensitive | lineage1.2.1.2 | None | SRR27450404 | Sensitive | lineage1.2.1.2 | None | ERR3283024 | Other | La1.6;La3;M.canetti;lineage4.6.4;lineage4.9 | None | SRR10040312 | MDR-TB | lineage2.2.1 | None | ERR13194047 | HR-TB | lineage1.2.1.2 | None | ERR2693245 | HR-TB | La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 | None | ERR13260046 | MDR-TB | lineage1.2.1.2 | None | ERR13260089 | MDR-TB | lineage1.2.1.2 | None | ERR13292098 | Sensitive | lineage1.2.1.2 | None | ERR9125656 | Sensitive | lineage1.2.1.2 | None | ERR9125745 | Sensitive | lineage1.2.1.2 | None | ERR3256223 | Sensitive | lineage1.2.1.2 | ph | ERR3256288 | Sensitive | lineage1.2.1.2 | ph | SRR21727758 | HR-TB | lineage1.2.1.2 | None | SRR16058363 | HR-TB | lineage1.2.1.2 | None | SRR16058377 | Sensitive | lineage1.2.1.2 | None | ERR4818103 | Sensitive | lineage1.2.1.2 | None | ERR2693231 | Other | La1.6;La3;lineage4.6.4;lineage4.9 | None | SRR29127098 | Sensitive | lineage1.2.1.2 | None | SRR28858679 | MDR-TB | lineage1.2.1.2 | None | ERR11067717 | Other | lineage1.2.1.2 | None | SRR28860170 | Sensitive | lineage1.2.1.2 | None | SRR6930927 | MDR-TB | lineage1.2.1.2 | None | SRR12882198 | HR-TB | lineage1.2.1.2 | None | SRR18289190 | Sensitive | lineage1.2.1.2 | None | ERR13260942 | Sensitive | lineage1.2.1.2 | None | SRR16058037 | Other | lineage1.2.1.2 | None | SRR29080977 | RR-TB | lineage1.2.1.2 | None | ERR13289749 | HR-TB | lineage1.2.1.2 | None | ERR6336804 | HR-TB | lineage1.2.1.2 | None | SRR26112793 | Sensitive | lineage1.2.1.2 | None | SRR29126793 | Sensitive | lineage1.2.1.2 | None | SRR28860180 | Sensitive | lineage1.2.1.2 | None | ERR2693230 | HR-TB | La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 | None | SRR5341453 | Other | lineage4.9 | None | SRR29081015 | HR-TB | lineage1.2.1.2 | None | SRR29440727 | HR-TB | lineage1.2.1.2 | None | ERR13291335 | Other | lineage1.2.1.2 | None | SRR20969489 | Sensitive | lineage1.2.1.2 | None | SRR29081014 | HR-TB | lineage1.2.1.2.1 | None | SRR18714774 | MDR-TB | lineage1.2.1.2 | None | ERR4820832 | Sensitive | lineage1.2.1.2 | None | ERR9125359 | Sensitive | lineage1.2.1.2 | None | ERR4822362 | MDR-TB | lineage1.2.1.2 | None | SRR21733102 | Sensitive | lineage1.2.1.2 | None | SRR6152654 | HR-TB | lineage1.2.1.2 | ca | ERR11775969 | MDR-TB | lineage1.2.1.2 | None | ERR9125298 | Sensitive | lineage1.2.1.2 | None | SRR21733119 | Sensitive | lineage1.2.1.2 | None | SRR28859688 | HR-TB | lineage1.2.1.2 | None | ERR9125349 | Other | lineage1.2.1.2 | None | SRR2100428 | Sensitive | lineage1.2.1.2 | None | ERR9125340 | Sensitive | lineage1.2.1.2 | None | SRR22249905 | Sensitive | lineage1.2.1.2 | None | ERR2693257 | Other | La1.6;La3;M.canetti;lineage4.8.1;lineage4.9 | None | ERR4829604 | Sensitive | lineage1.2.1.2 | it | SRR14520057 | Sensitive | lineage1.2.1.2 | None | SRR16089684 | Other | lineage1.2.1.2 | None | DRR188818 | Sensitive | lineage1.2.1.2 | None | ERR13252657 | Sensitive | lineage1.2.1.2 | None | ERR13291519 | Sensitive | lineage1.2.1.2 | None | ERR9125470 | MDR-TB | lineage1.2.1.2 | None | ERR13292347 | Sensitive | lineage1.2.1.2 | None | ERR9125667 | HR-TB | lineage1.2.1.2 | None | ERR3256241 | MDR-TB | lineage1.2.1.2 | ph | ERR3256251 | HR-TB | lineage1.2.1.2 | ph | SRR21726729 | Sensitive | lineage1.2.1.2 | None | SRR21747060 | MDR-TB | lineage1.2.1.2 | None | SRR16103911 | Sensitive | lineage1.2.1.2 | None | SRR16115080 | HR-TB | lineage1.2.1.2 | None | SRR16115073 | Sensitive | lineage1.2.1.2 | None | ERR3797061 | Other | La1.6;La3;lineage4.9 | None | SRR16058521 | Sensitive | lineage1.2.1.2 | None | SRR18911563 | Sensitive | lineage1.2.1.2 | None | SRR18911866 | Sensitive | lineage1.2.1.2 | None | SRR18911875 | HR-TB | lineage1.2.1.2 | None | SRR28409537 | Sensitive | lineage1.2.1.2 | None | SRR22251630 | Sensitive | lineage1.2.1.2 | None | SRR5341300 | HR-TB | lineage4.9 | None | SRR11342377 | Sensitive | lineage1.2.1.2 | None | ERR3256181 | Sensitive | lineage1.2.1.2 | ph | SRR12006632 | Sensitive | lineage1.2.1.2.1 | None | SRR29081044 | HR-TB | lineage1.2.1.2 | None |
|---|
