TB-Profiler result

Run: SRR12212956
Summary

Run ID: SRR12212956

Sample name:

Date: 03-04-2023 06:44:47

Number of reads: 12032132

Percentage reads mapped: 99.91

Strain: lineage4.9

Drug-resistance: Sensitive

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Drug resistance: This table reports drug-resistance associated mutations found in known resistance genes
Drug Resistance Supporting mutations
Lineage Table: The lineage is inferred by analysing lineage specific SNPs
Lineage Family Main Spoligotype RDs Frequency
lineage4 Euro-American LAM;T;S;X;H None 1.0
lineage4.9 Euro-American (H37Rv-like) T1 None 1.0
Drug resistance-Associated Mutations: This table reports mutations found in candidate resistance genes which have been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction Drugs
Non-Associated Mutations: This table reports mutations found in candidate resistance genes which have not been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction
mmpR5 779181 c.198delG frameshift_variant 1.0
rrs 1471659 n.-187C>T upstream_gene_variant 1.0
embB 4246548 p.Pro12Gln missense_variant 0.12
embB 4246555 c.42G>C synonymous_variant 0.1
embB 4246556 p.Ala15Pro missense_variant 0.1
embB 4246563 p.Leu17Trp missense_variant 0.11