Run ID: ERR2229756
Sample name:
Date: 18-08-2022 10:42:43
Number of reads: 894803
Percentage reads mapped: 99.42
Strain: lineage4.8
Drug-resistance: Sensitive
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
lineage4.8 | Euro-American (mainly T) | T1;T2;T3;T5 | RD219 | 0.99 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
mshA | 575292 | c.-56C>A | upstream_gene_variant | 0.18 |
mshA | 576108 | p.Ala254Gly | missense_variant | 0.19 |
mshA | 576111 | p.Ala255Gly | missense_variant | 0.18 |
rpoB | 759982 | p.Ile59Asn | missense_variant | 0.2 |
rpoC | 764104 | c.735C>T | synonymous_variant | 0.12 |
rpoC | 766202 | p.Gly945Cys | missense_variant | 0.14 |
fbiC | 1303747 | p.Thr273Ala | missense_variant | 1.0 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
rrs | 1471976 | n.131C>A | non_coding_transcript_exon_variant | 0.12 |
rrl | 1473609 | n.-49G>A | upstream_gene_variant | 0.12 |
fabG1 | 1673380 | c.-60C>G | upstream_gene_variant | 0.29 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
katG | 2153972 | p.Asp714Tyr | missense_variant | 0.15 |
ahpC | 2726187 | c.-6A>T | upstream_gene_variant | 0.15 |
pepQ | 2860012 | p.Asp136Ala | missense_variant | 0.12 |
thyX | 3067340 | c.606G>A | synonymous_variant | 0.25 |
thyA | 3074467 | p.Thr2Lys | missense_variant | 0.17 |
ald | 3086989 | p.Leu57Gln | missense_variant | 0.13 |
fbiA | 3640880 | p.Leu113Arg | missense_variant | 0.12 |
fbiB | 3641638 | p.Ala35Glu | missense_variant | 0.14 |
fbiB | 3641813 | p.Leu93Phe | missense_variant | 0.13 |
alr | 3841041 | p.Asp127Gly | missense_variant | 0.17 |
alr | 3841612 | c.-193_-192insC | upstream_gene_variant | 0.26 |
ddn | 3987152 | c.309A>G | synonymous_variant | 0.14 |
embC | 4240998 | p.Trp379Ser | missense_variant | 0.14 |
embC | 4241198 | p.Ile446Val | missense_variant | 0.17 |
embA | 4242643 | c.-590C>T | upstream_gene_variant | 1.0 |
embA | 4245034 | p.Arg601Pro | missense_variant | 0.18 |
embA | 4245252 | p.Thr674Ser | missense_variant | 0.2 |
embA | 4245917 | p.Gln895His | missense_variant | 0.12 |
embB | 4246544 | p.Thr11Pro | missense_variant | 0.4 |
embB | 4246548 | p.Pro12Gln | missense_variant | 0.37 |
embB | 4246555 | c.42G>C | synonymous_variant | 0.44 |
embB | 4246556 | p.Ala15Pro | missense_variant | 0.44 |
embB | 4246563 | p.Leu17Trp | missense_variant | 0.43 |
embB | 4246567 | c.54G>T | synonymous_variant | 0.4 |
embB | 4247458 | c.945C>T | synonymous_variant | 0.12 |
embB | 4247462 | p.Ser317Ala | missense_variant | 0.12 |
embB | 4247470 | c.957T>C | synonymous_variant | 0.13 |
embB | 4247472 | p.Phe320Tyr | missense_variant | 0.12 |
ubiA | 4269116 | p.Arg240Cys | missense_variant | 0.12 |
ubiA | 4269467 | p.Asn123His | missense_variant | 0.15 |
ubiA | 4269471 | c.363C>G | synonymous_variant | 0.17 |
ethR | 4326889 | c.-660C>A | upstream_gene_variant | 0.15 |
ethR | 4326913 | c.-636C>A | upstream_gene_variant | 0.12 |