Run ID: ERR6397159
Sample name:
Date: 02-04-2023 02:45:24
Number of reads: 5362313
Percentage reads mapped: 99.6
Strain: lineage4.6.5
Drug-resistance: Other
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
lineage4.6 | Euro-American | T;LAM | None | 1.0 |
lineage4.6.5 | Euro-American | T;LAM | None | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|---|---|---|---|---|
tlyA | 1918647 | p.Asn236Lys | missense_variant | 1.0 | capreomycin |
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrB | 5489 | p.Ile84Val | missense_variant | 1.0 |
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
gyrA | 7585 | p.Ser95Thr | missense_variant | 1.0 |
gyrA | 9304 | p.Gly668Asp | missense_variant | 1.0 |
fgd1 | 490756 | c.-27T>G | upstream_gene_variant | 1.0 |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 1.0 |
mmpL5 | 777974 | c.507C>T | synonymous_variant | 1.0 |
mmpL5 | 778968 | c.-488T>G | upstream_gene_variant | 1.0 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
PPE35 | 2170048 | p.Leu189Val | missense_variant | 0.17 |
PPE35 | 2170053 | p.Thr187Ser | missense_variant | 0.12 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
folC | 2746995 | p.Val202Ile | missense_variant | 1.0 |
fbiD | 3339734 | p.Ala206Gly | missense_variant | 0.41 |
fprA | 3473996 | c.-11_-10insA | upstream_gene_variant | 1.0 |
fbiA | 3640346 | c.-196delA | upstream_gene_variant | 1.0 |
rpoA | 3878567 | c.-60C>G | upstream_gene_variant | 0.11 |
rpoA | 3878641 | c.-134C>G | upstream_gene_variant | 0.11 |
clpC1 | 4038332 | c.2373C>T | synonymous_variant | 1.0 |
embA | 4242643 | c.-590C>T | upstream_gene_variant | 1.0 |
embB | 4246544 | p.Thr11Pro | missense_variant | 0.26 |
embB | 4246548 | p.Pro12Gln | missense_variant | 0.23 |
embB | 4246555 | c.42G>C | synonymous_variant | 0.24 |
embB | 4246556 | p.Ala15Pro | missense_variant | 0.24 |
embB | 4246563 | p.Leu17Trp | missense_variant | 0.24 |
embB | 4246567 | c.54G>T | synonymous_variant | 0.25 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |