EBG00000313339 - n.2754G>T
Drug resistance types
115 Sensitive
9 RR-TB
24 HR-TB
33 MDR-TB
11 Pre-XDR-TB
0 XDR-TB
46 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage2.2.1 | 38 |
| lineage4.3.3 | 5 |
| 4 | |
| lineage4.9 | 21 |
| lineage4.1.1.3.1 | 2 |
| La1.7.1 | 2 |
| lineage4.2.2 | 2 |
| lineage2.2.1.1 | 10 |
| lineage1.1.2 | 34 |
| lineage3 | 23 |
| lineage4.8 | 9 |
| lineage4.6.1.1 | 4 |
| lineage2.2.1.2 | 2 |
| lineage3.1.2.1 | 7 |
| lineage2.2.2 | 5 |
| lineage3.1.1 | 3 |
| lineage4.1.2.1 | 5 |
| lineage1.1.3 | 3 |
| lineage4.1.1 | 1 |
| lineage4.6 | 1 |
| lineage4.4.2 | 1 |
| lineage4.6.1 | 1 |
| lineage4.6.2.2 | 1 |
| lineage4.6.1.2 | 1 |
| lineage4 | 2 |
| lineage4.4.1.1 | 5 |
| lineage4.2.1;lineage2.2.1 | 1 |
| lineage4.2.1.1 | 1 |
| lineage4.2.1 | 1 |
| lineage4.4.1.1.1 | 3 |
| La1.8.1 | 19 |
| lineage4;La1.8.1 | 1 |
| La1 | 1 |
| lineage4.9;La1.8 | 1 |
| La1.8 | 1 |
| lineage4.3.2 | 2 |
| La1.2 | 1 |
| lineage4.1.2.1.1 | 1 |
| lineage2.2 | 4 |
| lineage4.9;lineage2.2.1 | 2 |
| lineage4.3.2.1 | 2 |
| lineage1.2.2.2 | 3 |
| lineage3.1.2 | 1 |
| lineage1.2.2.1 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 238 |
Geographic prevalence
Country level data for this variant is available for 29 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR13423535 | MDR-TB | lineage2.2.1 | None | SRR14782576 | Sensitive | lineage4.3.3 | None | SRR14782555 | Pre-XDR-TB | lineage2.2.1 | None | SRR1791910 | Other | None | SRR16156814 | Sensitive | lineage4.9 | None | SRR16156291 | Other | lineage4.9 | None | SRR16157045 | Sensitive | lineage4.9 | None | SRR18002872 | Pre-XDR-TB | lineage2.2.1 | None | SRR18002949 | Sensitive | lineage2.2.1 | None | SRR18003040 | MDR-TB | lineage2.2.1 | None | SRR18003051 | Other | lineage2.2.1 | None | SRR2100016 | Sensitive | lineage4.1.1.3.1 | None | SRR18391668 | Other | La1.7.1 | None | SRR18511602 | Sensitive | lineage4.2.2 | None | SRR18391658 | Other | La1.7.1 | None | ERR1633962 | Sensitive | lineage2.2.1.1 | None | SRR21240197 | Sensitive | lineage4.3.3 | None | SAMN02599094 | Sensitive | lineage1.1.2 | None | SRR3105762 | HR-TB | None | SRR21595927 | HR-TB | lineage2.2.1 | None | SAMN02599177 | Sensitive | lineage3 | None | SRR3675219 | Other | lineage4.9 | None | SRR6074059 | Sensitive | lineage4.8 | None | ERR171156 | Sensitive | lineage4.9 | None | ERR176544 | Sensitive | lineage4.6.1.1 | None | SAMN02599164 | Sensitive | lineage2.2.1.1 | None | SAMN02599066 | Sensitive | lineage2.2.1.2 | None | SRR6280275 | Sensitive | lineage2.2.1.1 | cn | SAMN02599170 | Sensitive | lineage1.1.2 | None | SAMN02599165 | Sensitive | lineage1.1.2 | None | SRR3675525 | Other | lineage4.8 | None | SAMN02599156 | HR-TB | lineage3.1.2.1 | None | SRR6280216 | RR-TB | lineage2.2.2 | cn | SRR6280270 | Sensitive | lineage2.2.1 | cn | SRR3742667 | Sensitive | lineage4.9 | None | ERR2245343 | Sensitive | lineage3.1.1 | no | SRR3743190 | Sensitive | lineage4.1.2.1 | None | SRR6280308 | Sensitive | lineage2.2.1 | cn | SAMN02403473 | Pre-XDR-TB | lineage2.2.2 | None | ERR2245344 | Sensitive | lineage3.1.1 | no | ERR2245292 | HR-TB | lineage3.1.1 | no | SAMN02599062 | MDR-TB | lineage3.1.2.1 | in | SAMN02599140 | Sensitive | lineage1.1.2 | None | SAMN02599179 | MDR-TB | lineage1.1.2 | None | SAMN02599162 | Sensitive | lineage1.1.2 | None | ERR4818166 | Sensitive | lineage4.3.3 | gb | SAMN02599064 | Sensitive | lineage2.2.1 | None | SRR6280210 | Sensitive | lineage2.2.1 | cn | ERR1352314 | Sensitive | lineage2.2.1 | cn | SRR5152904 | Other | lineage2.2.1 | None | SRR5152926 | MDR-TB | lineage2.2.1 | None | SRR7898217 | MDR-TB | lineage1.1.2 | None | SAMN02599137 | Sensitive | lineage3 | None | SAMN02599161 | Sensitive | lineage1.1.3 | None | ERR4818471 | Other | lineage2.2.1 | None | ERR2512864 | Sensitive | lineage4.1.2.1 | gb | SRR7898215 | HR-TB | lineage4.1.2.1 | None | SRR6280271 | Sensitive | lineage2.2.1 | cn | SAMN02598997 | Sensitive | lineage3 | in | SRR6280286 | Sensitive | lineage2.2.1 | None | ERR4819449 | Sensitive | lineage4.9 | None | ERR2179740 | Sensitive | lineage4.2.2 | cn | SRR6044769 | Other | lineage1.1.2 | None | SRR6046127 | Sensitive | lineage3 | None | SAMN02599075 | Sensitive | lineage1.1.2 | None | SRR6280150 | Sensitive | lineage2.2.1 | cn | SRR6280188 | Sensitive | lineage2.2.1.1 | cn | ERR2747607 | Sensitive | lineage4.9 | None | SRR5818627 | Sensitive | lineage4.1.2.1 | dj | SAMN02598962 | Sensitive | lineage1.1.2 | in | SRR6044916 | Other | lineage4.1.1 | None | SAMN02598991 | Other | lineage3 | in | SRR6046442 | Other | lineage3 | None | SRR6045376 | HR-TB | lineage4.1.2.1 | gb | SRR6280229 | Sensitive | lineage2.2.1 | cn | SRR6046258 | Sensitive | lineage4.6 | gb | SAMN02599138 | Sensitive | lineage1.1.2 | in | SRR6046558 | Other | lineage3 | gb | ERR279657 | Sensitive | lineage2.2.1.1 | None | SRR6789617 | RR-TB | lineage2.2.1 | None | SRR6280233 | Sensitive | lineage2.2.1 | cn | ERR495188 | Sensitive | lineage2.2.1.1 | None | ERR501647 | Sensitive | None | SRR6280312 | Sensitive | lineage2.2.1.1 | cn | SRR6785195 | Sensitive | lineage2.2.1 | None | SRR6896534 | Sensitive | None | SRR6824297 | Pre-XDR-TB | lineage2.2.1 | cn | SRR6797383 | Other | lineage3.1.2.1 | None | SRR6855793 | Sensitive | lineage2.2.1 | None | SRR6824423 | Sensitive | lineage4.4.2 | None | SRR6824572 | MDR-TB | lineage2.2.1 | None | SRR7535054 | Sensitive | lineage4.6.1 | None | SRR7131121 | Other | lineage4.3.3 | None | SRR7535053 | Sensitive | lineage3 | None | ERR5162122 | HR-TB | lineage4.9 | None | SRR7131004 | Other | lineage4.6.2.2 | None | SRR7131096 | Other | lineage4.8 | None | SRR7535074 | Sensitive | lineage3 | None | SRR7535073 | Sensitive | lineage4.6.1.1 | None | SRR7535077 | MDR-TB | lineage4.6.1.2 | None | SRR7535082 | Sensitive | lineage4 | None | SRR7535079 | Sensitive | lineage4.6.1.1 | None | SRR7535081 | Sensitive | lineage4.6.1.1 | None | SRR7535080 | HR-TB | lineage4.8 | None | SRR7645853 | MDR-TB | lineage2.2.1 | None | SRR7645856 | Sensitive | lineage4.4.1.1 | None | SRR7755705 | MDR-TB | lineage4.2.1;lineage2.2.1 | None | SRR7646056 | Other | lineage4.2.1.1 | None | SRR7646073 | MDR-TB | lineage4.2.1 | None | ERR037235 | Sensitive | lineage4.9 | None | SRR9971192 | MDR-TB | lineage4.4.1.1.1 | None | SRR9971197 | MDR-TB | lineage4.4.1.1.1 | None | SRR9217358 | Sensitive | lineage1.1.2 | None | ERR10796575 | RR-TB | lineage4.9 | None | ERR10796628 | Other | lineage4.3.3 | None | ERR10796593 | RR-TB | lineage4 | None | ERR3439522 | Other | La1.8.1 | None | ERR3468435 | Other | La1.8.1 | None | ERR3468445 | Other | La1.8.1 | None | ERR3468538 | Other | La1.8.1 | None | ERR3468522 | Sensitive | lineage4;La1.8.1 | None | ERR3468561 | HR-TB | lineage4.9 | None | ERR3468546 | Other | La1.8.1 | None | ERR3468551 | HR-TB | La1.8.1 | None | ERR3468562 | Other | La1.8.1 | None | ERR3468584 | Sensitive | lineage4.9 | None | ERR3468577 | HR-TB | La1 | None | ERR3468612 | Other | La1.8.1 | None | ERR3468594 | Other | La1.8.1 | None | ERR3468601 | HR-TB | La1.8.1 | None | ERR4188215 | Other | La1.8.1 | None | ERR3468644 | HR-TB | La1.8.1 | None | ERR3468668 | Other | La1.8.1 | None | ERR3470663 | Sensitive | lineage3 | None | ERR4188189 | Other | La1.8.1 | None | ERR4188208 | Other | La1.8.1 | None | ERR3468619 | HR-TB | lineage4.9;La1.8 | None | ERR3468643 | Other | La1.8 | None | ERR3468653 | Other | lineage4.9 | None | ERR3468659 | Other | lineage4.9 | None | ERR3468675 | Other | La1.8.1 | None | ERR3468683 | Other | La1.8.1 | None | ERR4178291 | Sensitive | lineage4.3.2 | None | ERR4188204 | Other | La1.8.1 | None | ERR4188223 | Other | La1.8.1 | None | ERR4596906 | Sensitive | lineage1.1.2 | None | ERR4596937 | Sensitive | lineage1.1.2 | None | ERR4769478 | Other | La1.2 | None | ERR5865066 | MDR-TB | lineage4.8 | None | ERR5865065 | MDR-TB | lineage4.8 | None | SRR1013530 | HR-TB | lineage4.9 | None | ERR5865230 | MDR-TB | lineage2.2.1 | None | ERR5865231 | MDR-TB | lineage2.2.1 | None | ERR5979445 | Sensitive | lineage3 | None | ERR6865895 | Sensitive | lineage4.3.2 | None | ERR9117723 | Other | lineage4.1.1.3.1 | None | ERR760878 | MDR-TB | lineage4.1.2.1.1 | ar | ERR7737736 | MDR-TB | lineage2.2.1 | None | SRR1013527 | RR-TB | lineage2.2 | None | SRR10315464 | MDR-TB | lineage4.4.1.1 | None | SRR1013531 | MDR-TB | lineage4.9 | None | SRR1013528 | Pre-XDR-TB | lineage2.2 | None | SRR1062868 | HR-TB | lineage4.9 | None | SRR1062869 | Pre-XDR-TB | lineage4.9 | None | SRR1062864 | Sensitive | lineage4.9;lineage2.2.1 | None | SRR1062867 | RR-TB | lineage4.9;lineage2.2.1 | None | SRR1062865 | HR-TB | lineage2.2.2 | None | SRR10869138 | Sensitive | lineage2.2.1 | None | SRR10869015 | Sensitive | lineage4.8 | None | SRR10869306 | Sensitive | lineage2.2.1.1 | None | SRR11349176 | RR-TB | lineage3 | None | SRR10869323 | HR-TB | lineage4.3.2.1 | None | SRR1106670 | Other | lineage4.9 | None | SRR11349172 | RR-TB | lineage4.3.2.1 | None | SRR11349179 | MDR-TB | lineage2.2.1 | None | SRR11349174 | MDR-TB | lineage4.4.1.1.1 | None | SRR1165236 | Pre-XDR-TB | lineage2.2 | None | SRR1141261 | MDR-TB | lineage4.9 | None | SRR1167264 | Pre-XDR-TB | lineage2.2 | None | SRR1169473 | Sensitive | lineage1.1.2 | None | SRR1169516 | Sensitive | lineage1.2.2.2 | None | SRR1169497 | HR-TB | lineage1.1.2 | None | SRR1172135 | Sensitive | lineage3.1.2 | None | SRR1169576 | Sensitive | lineage1.1.2 | None | SRR1172874 | Sensitive | lineage2.2.1 | None | SRR1172145 | Sensitive | lineage1.2.2.2 | None | SRR1172300 | Sensitive | lineage1.1.2 | None | SRR1172705 | Sensitive | lineage2.2.1.1 | None | SRR1172751 | HR-TB | lineage3.1.2.1 | None | SRR1172848 | MDR-TB | lineage1.1.2 | None | SRR1172881 | Sensitive | lineage1.1.2 | None | SRR1172226 | HR-TB | lineage1.2.2.2 | None | SRR1172709 | Sensitive | lineage1.1.3 | None | SRR1172722 | Sensitive | lineage1.1.2 | None | SRR1172840 | Sensitive | lineage1.1.2 | None | SRR1172873 | MDR-TB | lineage1.1.2 | None | SRR1172943 | HR-TB | lineage3 | None | SRR1172911 | Sensitive | lineage3 | None | SRR1172904 | Sensitive | lineage1.1.2 | None | SRR1172928 | MDR-TB | lineage3.1.2.1 | None | SRR1172958 | Sensitive | lineage2.2.1 | None | SRR1172949 | Sensitive | lineage1.1.2 | None | SRR1173013 | Sensitive | lineage1.1.2 | None | SRR1172968 | Sensitive | lineage3 | None | SRR1173008 | Sensitive | lineage1.1.2 | None | SRR1173022 | Sensitive | lineage3 | None | SRR1173037 | Sensitive | lineage1.1.2 | None | SRR1173036 | Sensitive | lineage1.1.3 | None | SRR1173111 | Sensitive | lineage1.1.2 | None | SRR1173047 | Sensitive | lineage1.1.2 | None | SRR1173055 | MDR-TB | lineage2.2.1 | None | SRR1173090 | Sensitive | lineage3 | None | SRR1173099 | Sensitive | lineage2.2.1.1 | None | SRR1173129 | Other | lineage1.2.2.1 | None | SRR1173183 | Sensitive | lineage1.1.2 | None | SRR1173174 | Pre-XDR-TB | lineage2.2.2 | None | SRR1173567 | Other | lineage3 | None | SRR1173250 | Sensitive | lineage2.2.1 | None | SRR1173377 | Pre-XDR-TB | lineage2.2.2 | None | SRR1173559 | Sensitive | lineage3 | None | SRR1173694 | Sensitive | lineage1.1.2 | None | SRR1173632 | RR-TB | lineage2.2.1 | None | SRR1173801 | Other | lineage3 | None | SRR1174305 | Sensitive | lineage3 | None | SRR1173874 | Other | lineage1.1.2 | None | SRR1175032 | Sensitive | lineage3 | None | SRR1175114 | Sensitive | lineage2.2.1.2 | None | SRR1175134 | MDR-TB | lineage3.1.2.1 | None | SRR1175132 | HR-TB | lineage3 | None | SRR1180929 | MDR-TB | lineage4.4.1.1 | None | SRR1175173 | HR-TB | lineage3.1.2.1 | None | SRR1180170 | Sensitive | lineage1.1.2 | None | SRR1180972 | MDR-TB | lineage2.2.1 | None | SRR1180947 | Sensitive | lineage4.8 | None | SRR1181051 | MDR-TB | lineage4.4.1.1 | None | SRR1180999 | Sensitive | lineage4.8 | None | SRR1181100 | Pre-XDR-TB | lineage4.4.1.1 | None | SRR1181120 | MDR-TB | lineage2.2.1 | None |
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