Run ID: SRR1172911
Sample name:
Date: 03-04-2023 03:13:06
Number of reads: 1675580
Percentage reads mapped: 82.5
Strain: lineage3
Drug-resistance: Sensitive
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage3 | East-African-Indian | CAS | RD750 | 0.99 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrB | 6963 | p.Arg575His | missense_variant | 1.0 |
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
gyrA | 7585 | p.Ser95Thr | missense_variant | 1.0 |
gyrA | 9304 | p.Gly668Asp | missense_variant | 1.0 |
fgd1 | 491742 | c.960T>C | synonymous_variant | 1.0 |
rpoB | 759746 | c.-61C>T | upstream_gene_variant | 1.0 |
rpoC | 762434 | c.-936T>G | upstream_gene_variant | 1.0 |
rpoC | 763031 | c.-339T>C | upstream_gene_variant | 1.0 |
rpoC | 763205 | c.-165G>A | upstream_gene_variant | 1.0 |
rpoC | 767065 | c.3696G>C | synonymous_variant | 1.0 |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 1.0 |
mmpL5 | 776100 | p.Thr794Ile | missense_variant | 1.0 |
mmpL5 | 776181 | p.Asp767Ala | missense_variant | 1.0 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
rrs | 1472214 | n.369C>G | non_coding_transcript_exon_variant | 0.12 |
rrs | 1472235 | n.390G>C | non_coding_transcript_exon_variant | 0.12 |
rrs | 1472240 | n.395G>C | non_coding_transcript_exon_variant | 0.12 |
rrs | 1472242 | n.397C>T | non_coding_transcript_exon_variant | 0.12 |
rrs | 1472259 | n.414C>A | non_coding_transcript_exon_variant | 0.12 |
rrs | 1472734 | n.889C>T | non_coding_transcript_exon_variant | 0.15 |
rrs | 1472741 | n.896G>A | non_coding_transcript_exon_variant | 0.17 |
rrs | 1472767 | n.922G>A | non_coding_transcript_exon_variant | 0.1 |
rrs | 1472781 | n.936C>T | non_coding_transcript_exon_variant | 0.2 |
rrs | 1472785 | n.940G>T | non_coding_transcript_exon_variant | 0.11 |
rrs | 1472786 | n.941C>G | non_coding_transcript_exon_variant | 0.12 |
rrs | 1472814 | n.969G>A | non_coding_transcript_exon_variant | 0.11 |
rrs | 1473148 | n.1303G>A | non_coding_transcript_exon_variant | 0.12 |
rrs | 1473163 | n.1318C>T | non_coding_transcript_exon_variant | 0.23 |
rrs | 1473164 | n.1319C>G | non_coding_transcript_exon_variant | 0.12 |
rrs | 1473166 | n.1321G>A | non_coding_transcript_exon_variant | 0.12 |
rrs | 1473177 | n.1332G>A | non_coding_transcript_exon_variant | 0.26 |
rrs | 1473192 | n.1347A>G | non_coding_transcript_exon_variant | 0.11 |
rrs | 1473204 | n.1359C>T | non_coding_transcript_exon_variant | 0.11 |
rrs | 1473205 | n.1360T>C | non_coding_transcript_exon_variant | 0.11 |
rrs | 1473226 | n.1381C>T | non_coding_transcript_exon_variant | 0.11 |
rrl | 1476336 | n.2679C>T | non_coding_transcript_exon_variant | 0.13 |
rrl | 1476338 | n.2681C>T | non_coding_transcript_exon_variant | 0.12 |
rrl | 1476356 | n.2699C>A | non_coding_transcript_exon_variant | 0.18 |
rrl | 1476357 | n.2700T>C | non_coding_transcript_exon_variant | 0.18 |
rrl | 1476358 | n.2701T>C | non_coding_transcript_exon_variant | 0.18 |
rrl | 1476359 | n.2702C>G | non_coding_transcript_exon_variant | 0.18 |
rrl | 1476369 | n.2712C>T | non_coding_transcript_exon_variant | 0.21 |
rrl | 1476381 | n.2724G>C | non_coding_transcript_exon_variant | 0.21 |
rrl | 1476382 | n.2725A>G | non_coding_transcript_exon_variant | 0.21 |
rrl | 1476383 | n.2726T>G | non_coding_transcript_exon_variant | 0.21 |
rrl | 1476384 | n.2727G>T | non_coding_transcript_exon_variant | 0.21 |
rrl | 1476408 | n.2751G>A | non_coding_transcript_exon_variant | 0.25 |
rrl | 1476411 | n.2754G>T | non_coding_transcript_exon_variant | 0.24 |
rrl | 1476425 | n.2768G>T | non_coding_transcript_exon_variant | 0.25 |
rrl | 1476429 | n.2772A>C | non_coding_transcript_exon_variant | 0.23 |
rrl | 1476442 | n.2785T>A | non_coding_transcript_exon_variant | 0.19 |
rrl | 1476443 | n.2786G>T | non_coding_transcript_exon_variant | 0.17 |
rrl | 1476455 | n.2798C>A | non_coding_transcript_exon_variant | 0.17 |
rrl | 1476456 | n.2799A>T | non_coding_transcript_exon_variant | 0.17 |
rrl | 1476466 | n.2809C>T | non_coding_transcript_exon_variant | 0.12 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
katG | 2154724 | p.Arg463Leu | missense_variant | 1.0 |
PPE35 | 2167726 | c.2876_2886delTGCCGTTTGCC | frameshift_variant | 1.0 |
PPE35 | 2167926 | p.Leu896Ser | missense_variant | 1.0 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
pncA | 2289365 | c.-125delC | upstream_gene_variant | 1.0 |
ahpC | 2726105 | c.-88G>A | upstream_gene_variant | 0.94 |
Rv2752c | 3065837 | p.Tyr119Asp | missense_variant | 0.98 |
ald | 3086788 | c.-32T>C | upstream_gene_variant | 0.99 |
ald | 3087789 | p.Leu324Ile | missense_variant | 0.1 |
fprA | 3473996 | c.-11_-10insA | upstream_gene_variant | 1.0 |
alr | 3841590 | c.-170G>A | upstream_gene_variant | 1.0 |
embC | 4242075 | p.Arg738Gln | missense_variant | 1.0 |
embA | 4242643 | c.-590C>T | upstream_gene_variant | 1.0 |
aftB | 4268719 | p.Asn40Asp | missense_variant | 1.0 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |
gid | 4407588 | c.615A>G | synonymous_variant | 1.0 |