Run ID: ERR3470663
Sample name:
Date: 01-04-2023 02:30:01
Number of reads: 2366319
Percentage reads mapped: 95.77
Strain: lineage3
Drug-resistance: Sensitive
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage3 | East-African-Indian | CAS | RD750 | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
gyrA | 7585 | p.Ser95Thr | missense_variant | 1.0 |
gyrA | 7818 | c.517C>T | synonymous_variant | 1.0 |
gyrA | 9304 | p.Gly668Asp | missense_variant | 1.0 |
gyrA | 9596 | c.2295G>T | synonymous_variant | 1.0 |
fgd1 | 491742 | c.960T>C | synonymous_variant | 1.0 |
rpoB | 759746 | c.-61C>T | upstream_gene_variant | 1.0 |
rpoC | 762434 | c.-936T>G | upstream_gene_variant | 1.0 |
rpoC | 763031 | c.-339T>C | upstream_gene_variant | 1.0 |
rpoC | 764181 | p.Asp271Gly | missense_variant | 1.0 |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 1.0 |
mmpL5 | 776100 | p.Thr794Ile | missense_variant | 1.0 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
rrs | 1472172 | n.327T>C | non_coding_transcript_exon_variant | 0.12 |
rrs | 1472177 | n.332C>T | non_coding_transcript_exon_variant | 0.11 |
rrs | 1472655 | n.810G>A | non_coding_transcript_exon_variant | 0.17 |
rrs | 1472658 | n.813G>A | non_coding_transcript_exon_variant | 0.17 |
rrs | 1472661 | n.816A>G | non_coding_transcript_exon_variant | 0.16 |
rrs | 1472670 | n.825G>T | non_coding_transcript_exon_variant | 0.12 |
rrs | 1472690 | n.845C>A | non_coding_transcript_exon_variant | 0.13 |
rrs | 1472713 | n.868T>C | non_coding_transcript_exon_variant | 0.13 |
rrs | 1472716 | n.871C>T | non_coding_transcript_exon_variant | 0.14 |
rrs | 1472734 | n.889C>T | non_coding_transcript_exon_variant | 0.12 |
rrs | 1472741 | n.896G>A | non_coding_transcript_exon_variant | 0.12 |
rrs | 1472744 | n.899A>G | non_coding_transcript_exon_variant | 0.12 |
rrs | 1473226 | n.1381C>T | non_coding_transcript_exon_variant | 0.11 |
rrs | 1473248 | n.1403G>A | non_coding_transcript_exon_variant | 0.17 |
rrs | 1473249 | n.1404T>C | non_coding_transcript_exon_variant | 0.17 |
rrs | 1473255 | n.1410A>G | non_coding_transcript_exon_variant | 0.17 |
rrs | 1473261 | n.1416G>A | non_coding_transcript_exon_variant | 0.16 |
rrs | 1473276 | n.1431A>G | non_coding_transcript_exon_variant | 0.14 |
rrs | 1473280 | n.1435G>A | non_coding_transcript_exon_variant | 0.13 |
rrs | 1473281 | n.1436C>G | non_coding_transcript_exon_variant | 0.13 |
rrs | 1473288 | n.1443C>G | non_coding_transcript_exon_variant | 0.14 |
rrs | 1473290 | n.1445C>A | non_coding_transcript_exon_variant | 0.14 |
rrs | 1473291 | n.1446G>A | non_coding_transcript_exon_variant | 0.14 |
rrs | 1473297 | n.1452G>C | non_coding_transcript_exon_variant | 0.12 |
rrs | 1473301 | n.1456T>C | non_coding_transcript_exon_variant | 0.13 |
rrs | 1473318 | n.1473G>A | non_coding_transcript_exon_variant | 0.11 |
rrs | 1473319 | n.1474C>T | non_coding_transcript_exon_variant | 0.11 |
rrs | 1473327 | n.1482A>G | non_coding_transcript_exon_variant | 0.11 |
rrl | 1476251 | n.2594T>C | non_coding_transcript_exon_variant | 0.18 |
rrl | 1476260 | n.2603A>G | non_coding_transcript_exon_variant | 0.18 |
rrl | 1476269 | n.2612C>G | non_coding_transcript_exon_variant | 0.11 |
rrl | 1476276 | n.2619C>T | non_coding_transcript_exon_variant | 0.11 |
rrl | 1476280 | n.2623A>C | non_coding_transcript_exon_variant | 0.18 |
rrl | 1476293 | n.2636C>T | non_coding_transcript_exon_variant | 0.16 |
rrl | 1476294 | n.2637A>G | non_coding_transcript_exon_variant | 0.16 |
rrl | 1476295 | n.2638C>G | non_coding_transcript_exon_variant | 0.15 |
rrl | 1476311 | n.2654G>C | non_coding_transcript_exon_variant | 0.16 |
rrl | 1476312 | n.2655T>C | non_coding_transcript_exon_variant | 0.16 |
rrl | 1476313 | n.2656G>A | non_coding_transcript_exon_variant | 0.17 |
rrl | 1476332 | n.2675G>C | non_coding_transcript_exon_variant | 0.22 |
rrl | 1476353 | n.2696G>T | non_coding_transcript_exon_variant | 0.25 |
rrl | 1476358 | n.2701T>C | non_coding_transcript_exon_variant | 0.28 |
rrl | 1476372 | n.2715T>C | non_coding_transcript_exon_variant | 0.29 |
rrl | 1476382 | n.2725A>G | non_coding_transcript_exon_variant | 0.27 |
rrl | 1476383 | n.2726T>A | non_coding_transcript_exon_variant | 0.26 |
rrl | 1476411 | n.2754G>T | non_coding_transcript_exon_variant | 0.23 |
rrl | 1476420 | n.2763G>A | non_coding_transcript_exon_variant | 0.22 |
rrl | 1476425 | n.2768G>T | non_coding_transcript_exon_variant | 0.25 |
rrl | 1476433 | n.2776C>T | non_coding_transcript_exon_variant | 0.22 |
rrl | 1476463 | n.2806C>A | non_coding_transcript_exon_variant | 0.29 |
rrl | 1476481 | n.2824T>C | non_coding_transcript_exon_variant | 0.26 |
rrl | 1476506 | n.2849T>C | non_coding_transcript_exon_variant | 0.15 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
katG | 2154724 | p.Arg463Leu | missense_variant | 1.0 |
PPE35 | 2167926 | p.Leu896Ser | missense_variant | 1.0 |
PPE35 | 2170769 | c.-157C>T | upstream_gene_variant | 1.0 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
pncA | 2289047 | c.195C>T | synonymous_variant | 1.0 |
pncA | 2289365 | c.-125delC | upstream_gene_variant | 1.0 |
ahpC | 2726105 | c.-88G>A | upstream_gene_variant | 1.0 |
ald | 3086788 | c.-32T>C | upstream_gene_variant | 1.0 |
fprA | 3473996 | c.-11_-10insA | upstream_gene_variant | 1.0 |
embC | 4242075 | p.Arg738Gln | missense_variant | 1.0 |
embA | 4242643 | c.-590C>T | upstream_gene_variant | 1.0 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |
gid | 4407588 | c.615A>G | synonymous_variant | 1.0 |