Run ID: SRR1791910
Sample name:
Date: 03-04-2023 18:34:29
Number of reads: 169627
Percentage reads mapped: 21.0
Strain:
Drug-resistance: Other
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
La1.8.1 | M.bovis | None | None | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|---|---|---|---|---|
pncA | 2289073 | p.His57Asp | missense_variant | 1.0 | pyrazinamide |
ethA | 4326419 | c.1054delG | frameshift_variant | 0.5 | ethionamide, ethionamide |
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrB | 5220 | c.-20C>A | upstream_gene_variant | 0.25 |
gyrB | 5752 | c.513G>A | synonymous_variant | 1.0 |
gyrA | 6406 | c.-896C>T | upstream_gene_variant | 1.0 |
gyrB | 6446 | p.Ala403Ser | missense_variant | 1.0 |
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
gyrA | 7585 | p.Ser95Thr | missense_variant | 1.0 |
gyrA | 8151 | p.Ile284Val | missense_variant | 0.29 |
gyrA | 8285 | c.984C>T | synonymous_variant | 1.0 |
gyrA | 9143 | c.1842T>C | synonymous_variant | 1.0 |
gyrA | 9217 | p.Asp639Ala | missense_variant | 1.0 |
gyrA | 9304 | p.Gly668Asp | missense_variant | 1.0 |
fgd1 | 491742 | c.960T>C | synonymous_variant | 1.0 |
ccsA | 620748 | c.858T>G | synonymous_variant | 0.33 |
rpoB | 760790 | c.984C>T | synonymous_variant | 0.22 |
rpoC | 763031 | c.-339T>C | upstream_gene_variant | 1.0 |
rpoC | 764134 | c.765C>T | synonymous_variant | 0.2 |
rpoC | 764869 | c.1500C>T | synonymous_variant | 0.33 |
rpoC | 764872 | c.1503A>G | synonymous_variant | 0.33 |
rpoC | 764875 | c.1506C>G | synonymous_variant | 0.33 |
rpoC | 764878 | c.1509C>G | synonymous_variant | 0.33 |
rpoC | 764887 | c.1518G>T | synonymous_variant | 0.33 |
rpoC | 764902 | c.1533C>G | synonymous_variant | 0.29 |
rpoC | 764911 | c.1542A>G | synonymous_variant | 0.29 |
rpoC | 764912 | p.Met515Val | missense_variant | 0.29 |
rpoC | 764918 | p.Val517Ile | missense_variant | 0.25 |
rpoC | 764935 | c.1566T>C | synonymous_variant | 0.22 |
rpoC | 764944 | c.1575C>T | synonymous_variant | 0.22 |
rpoC | 764948 | c.1579T>C | synonymous_variant | 0.22 |
rpoC | 764953 | c.1584G>C | synonymous_variant | 0.22 |
rpoC | 764956 | c.1587T>C | synonymous_variant | 0.22 |
rpoC | 764958 | p.Glu530Ala | missense_variant | 0.22 |
rpoC | 764968 | c.1599T>C | synonymous_variant | 0.22 |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 1.0 |
mmpL5 | 775799 | c.2682G>A | synonymous_variant | 0.22 |
mmpL5 | 776100 | p.Thr794Ile | missense_variant | 1.0 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
rpsL | 781679 | c.120C>G | synonymous_variant | 0.2 |
rpsL | 781682 | c.123T>G | synonymous_variant | 0.2 |
rpsL | 781703 | c.144G>A | synonymous_variant | 0.22 |
rpsL | 781706 | c.147T>G | synonymous_variant | 0.22 |
rpsL | 781709 | c.150G>T | synonymous_variant | 0.2 |
rplC | 801129 | c.321C>A | synonymous_variant | 1.0 |
fbiC | 1302899 | c.-32A>G | upstream_gene_variant | 1.0 |
fbiC | 1303016 | p.Val29Gly | missense_variant | 0.29 |
atpE | 1461087 | p.Leu15Met | missense_variant | 0.22 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
rrs | 1472172 | n.327T>C | non_coding_transcript_exon_variant | 0.18 |
rrs | 1472210 | n.365A>T | non_coding_transcript_exon_variant | 0.14 |
rrs | 1472214 | n.369C>G | non_coding_transcript_exon_variant | 0.14 |
rrs | 1472225 | n.380C>A | non_coding_transcript_exon_variant | 0.15 |
rrs | 1472235 | n.390G>C | non_coding_transcript_exon_variant | 0.15 |
rrs | 1472240 | n.395G>A | non_coding_transcript_exon_variant | 0.15 |
rrs | 1472242 | n.397C>T | non_coding_transcript_exon_variant | 0.17 |
rrs | 1472251 | n.406G>T | non_coding_transcript_exon_variant | 0.17 |
rrs | 1472253 | n.408G>T | non_coding_transcript_exon_variant | 0.17 |
rrs | 1472256 | n.411T>A | non_coding_transcript_exon_variant | 0.17 |
rrs | 1472259 | n.414C>A | non_coding_transcript_exon_variant | 0.17 |
rrs | 1472277 | n.432C>G | non_coding_transcript_exon_variant | 0.14 |
rrs | 1472344 | n.499C>T | non_coding_transcript_exon_variant | 0.15 |
rrs | 1472734 | n.889C>T | non_coding_transcript_exon_variant | 0.31 |
rrs | 1472741 | n.896G>A | non_coding_transcript_exon_variant | 0.33 |
rrs | 1472742 | n.897C>T | non_coding_transcript_exon_variant | 0.33 |
rrs | 1472767 | n.922G>A | non_coding_transcript_exon_variant | 0.36 |
rrs | 1472781 | n.936C>T | non_coding_transcript_exon_variant | 0.2 |
rrs | 1472785 | n.940G>T | non_coding_transcript_exon_variant | 0.2 |
rrs | 1472786 | n.941C>G | non_coding_transcript_exon_variant | 0.18 |
rrs | 1472958 | n.1113A>T | non_coding_transcript_exon_variant | 0.22 |
rrs | 1472959 | n.1114T>A | non_coding_transcript_exon_variant | 0.22 |
rrs | 1472972 | n.1127T>A | non_coding_transcript_exon_variant | 0.18 |
rrs | 1472974 | n.1130_1133delTGGT | non_coding_transcript_exon_variant | 0.18 |
rrs | 1472982 | n.1137G>C | non_coding_transcript_exon_variant | 0.18 |
rrs | 1472987 | n.1142G>T | non_coding_transcript_exon_variant | 0.25 |
rrs | 1472988 | n.1143T>A | non_coding_transcript_exon_variant | 0.23 |
rrs | 1473002 | n.1157G>T | non_coding_transcript_exon_variant | 0.31 |
rrs | 1473004 | n.1159T>A | non_coding_transcript_exon_variant | 0.31 |
rrs | 1473008 | n.1163C>A | non_coding_transcript_exon_variant | 0.31 |
rrs | 1473009 | n.1164T>C | non_coding_transcript_exon_variant | 0.31 |
rrs | 1473038 | n.1193A>C | non_coding_transcript_exon_variant | 0.38 |
rrs | 1473044 | n.1199C>G | non_coding_transcript_exon_variant | 0.29 |
rrs | 1473053 | n.1208T>G | non_coding_transcript_exon_variant | 0.17 |
rrs | 1473054 | n.1209C>G | non_coding_transcript_exon_variant | 0.17 |
rrl | 1474218 | n.561T>A | non_coding_transcript_exon_variant | 0.25 |
rrl | 1474221 | n.564T>C | non_coding_transcript_exon_variant | 0.25 |
rrl | 1474228 | n.571T>A | non_coding_transcript_exon_variant | 0.25 |
rrl | 1474249 | n.592G>T | non_coding_transcript_exon_variant | 0.25 |
rrl | 1475816 | n.2159C>G | non_coding_transcript_exon_variant | 0.12 |
rrl | 1475817 | n.2160A>G | non_coding_transcript_exon_variant | 0.24 |
rrl | 1475877 | n.2220C>T | non_coding_transcript_exon_variant | 0.2 |
rrl | 1476336 | n.2679C>T | non_coding_transcript_exon_variant | 0.31 |
rrl | 1476338 | n.2681C>T | non_coding_transcript_exon_variant | 0.31 |
rrl | 1476356 | n.2699C>A | non_coding_transcript_exon_variant | 0.38 |
rrl | 1476357 | n.2700T>C | non_coding_transcript_exon_variant | 0.38 |
rrl | 1476358 | n.2701T>C | non_coding_transcript_exon_variant | 0.38 |
rrl | 1476359 | n.2702C>G | non_coding_transcript_exon_variant | 0.41 |
rrl | 1476369 | n.2712C>T | non_coding_transcript_exon_variant | 0.39 |
rrl | 1476381 | n.2724G>C | non_coding_transcript_exon_variant | 0.39 |
rrl | 1476382 | n.2725A>G | non_coding_transcript_exon_variant | 0.41 |
rrl | 1476383 | n.2726T>G | non_coding_transcript_exon_variant | 0.41 |
rrl | 1476384 | n.2727G>T | non_coding_transcript_exon_variant | 0.41 |
rrl | 1476408 | n.2751G>A | non_coding_transcript_exon_variant | 0.47 |
rrl | 1476411 | n.2754G>T | non_coding_transcript_exon_variant | 0.47 |
rrl | 1476425 | n.2768G>T | non_coding_transcript_exon_variant | 0.43 |
rrl | 1476429 | n.2772A>C | non_coding_transcript_exon_variant | 0.46 |
rrl | 1476442 | n.2785T>A | non_coding_transcript_exon_variant | 0.38 |
rrl | 1476443 | n.2786G>T | non_coding_transcript_exon_variant | 0.38 |
rrl | 1476455 | n.2798C>A | non_coding_transcript_exon_variant | 0.43 |
rrl | 1476456 | n.2799A>T | non_coding_transcript_exon_variant | 0.43 |
rrl | 1476463 | n.2806C>A | non_coding_transcript_exon_variant | 0.43 |
rrl | 1476466 | n.2809C>T | non_coding_transcript_exon_variant | 0.38 |
rrl | 1476470 | n.2813C>T | non_coding_transcript_exon_variant | 0.38 |
rrl | 1476483 | n.2826G>A | non_coding_transcript_exon_variant | 0.3 |
rpsA | 1833675 | p.Lys45Arg | missense_variant | 0.17 |
rpsA | 1833683 | p.Arg48Trp | missense_variant | 0.17 |
rpsA | 1834859 | p.Ala440Thr | missense_variant | 1.0 |
tlyA | 1917865 | c.-74_-73delCG | upstream_gene_variant | 0.22 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
ndh | 2101865 | p.Trp393* | stop_gained | 0.5 |
ndh | 2102193 | p.Arg284Trp | missense_variant | 1.0 |
ndh | 2103173 | c.-132delG | upstream_gene_variant | 1.0 |
ndh | 2103225 | c.-183A>C | upstream_gene_variant | 0.29 |
katG | 2154724 | p.Arg463Leu | missense_variant | 1.0 |
katG | 2155503 | c.609C>T | synonymous_variant | 1.0 |
katG | 2156025 | c.87C>A | synonymous_variant | 1.0 |
PPE35 | 2167926 | p.Leu896Ser | missense_variant | 1.0 |
PPE35 | 2168011 | p.Ser868Arg | missense_variant | 1.0 |
PPE35 | 2168319 | p.Thr765Ile | missense_variant | 1.0 |
PPE35 | 2168814 | c.1798dupA | frameshift_variant | 1.0 |
PPE35 | 2169895 | p.Gly240Ser | missense_variant | 0.33 |
Rv1979c | 2222308 | p.Asp286Gly | missense_variant | 1.0 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
kasA | 2518132 | c.18C>T | synonymous_variant | 1.0 |
eis | 2714566 | p.Leu256Pro | missense_variant | 0.33 |
thyX | 3067655 | c.291G>A | synonymous_variant | 0.12 |
ald | 3086728 | c.-92C>T | upstream_gene_variant | 1.0 |
ald | 3086788 | c.-32T>C | upstream_gene_variant | 1.0 |
ald | 3087084 | c.266delA | frameshift_variant | 1.0 |
Rv3083 | 3448783 | p.Val94Ile | missense_variant | 1.0 |
Rv3083 | 3449741 | p.Met413Arg | missense_variant | 0.15 |
fprA | 3473996 | c.-11_-10insA | upstream_gene_variant | 1.0 |
fprA | 3474427 | p.Val141Ile | missense_variant | 1.0 |
fprA | 3475159 | p.Asn385Asp | missense_variant | 1.0 |
whiB7 | 3568792 | c.-113C>T | upstream_gene_variant | 0.18 |
alr | 3841427 | c.-7C>T | upstream_gene_variant | 0.22 |
clpC1 | 4038403 | c.2302T>C | synonymous_variant | 1.0 |
clpC1 | 4040021 | c.684A>G | synonymous_variant | 0.22 |
clpC1 | 4040032 | p.Val225Ile | missense_variant | 0.22 |
clpC1 | 4040033 | c.672G>C | synonymous_variant | 0.22 |
clpC1 | 4040036 | c.669C>G | synonymous_variant | 0.22 |
clpC1 | 4040051 | c.654C>G | synonymous_variant | 0.2 |
embC | 4240671 | p.Thr270Ile | missense_variant | 1.0 |
embC | 4242527 | p.Gly889Trp | missense_variant | 0.4 |
embA | 4242643 | c.-590C>T | upstream_gene_variant | 1.0 |
embC | 4242929 | p.Pro1023Thr | missense_variant | 0.4 |
embA | 4242970 | c.-263C>T | upstream_gene_variant | 1.0 |
embA | 4244220 | c.988C>T | synonymous_variant | 1.0 |
embB | 4246551 | p.Asn13Ser | missense_variant | 1.0 |
embB | 4246864 | c.351C>T | synonymous_variant | 1.0 |
embB | 4247646 | p.Glu378Ala | missense_variant | 1.0 |
aftB | 4267858 | p.Ile327Val | missense_variant | 1.0 |
aftB | 4269351 | c.-515C>T | upstream_gene_variant | 1.0 |
ubiA | 4269387 | p.Glu149Asp | missense_variant | 1.0 |
aftB | 4269606 | c.-770T>C | upstream_gene_variant | 1.0 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |
gid | 4407588 | c.615A>G | synonymous_variant | 1.0 |