Run ID: ERR7361933
Sample name:
Date: 02-04-2023 04:12:15
Number of reads: 3429586
Percentage reads mapped: 99.5
Strain: lineage4.1.2.1
Drug-resistance: Sensitive
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
lineage4.1 | Euro-American | T;X;H | None | 1.0 |
lineage4.1.2 | Euro-American | T;H | None | 0.97 |
lineage4.1.2.1 | Euro-American (Haarlem) | T1;H1 | RD182 | 0.99 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
gyrA | 7585 | p.Ser95Thr | missense_variant | 1.0 |
gyrA | 9304 | p.Gly668Asp | missense_variant | 1.0 |
fgd1 | 491591 | p.Lys270Met | missense_variant | 0.98 |
mshA | 575679 | p.Asn111Ser | missense_variant | 1.0 |
mshA | 576108 | p.Ala254Gly | missense_variant | 0.32 |
mshA | 576111 | p.Ala255Gly | missense_variant | 0.17 |
rpoB | 760115 | c.309C>T | synonymous_variant | 1.0 |
rpoC | 762728 | c.-642C>T | upstream_gene_variant | 0.12 |
rpoC | 765150 | p.Gly594Glu | missense_variant | 1.0 |
rpoC | 766167 | p.Ala933Val | missense_variant | 0.17 |
rpoC | 766416 | p.His1016Arg | missense_variant | 0.17 |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 1.0 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
fbiC | 1304299 | p.Gly457Ser | missense_variant | 0.17 |
fbiC | 1304387 | p.Arg486Leu | missense_variant | 0.12 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
rrl | 1474324 | n.667C>T | non_coding_transcript_exon_variant | 0.33 |
rrl | 1475869 | n.2212C>T | non_coding_transcript_exon_variant | 0.5 |
rrl | 1476155 | n.2498C>A | non_coding_transcript_exon_variant | 0.33 |
rrl | 1476704 | n.3053delC | non_coding_transcript_exon_variant | 1.0 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
katG | 2153964 | c.2148G>A | synonymous_variant | 0.18 |
PPE35 | 2169122 | c.1491C>G | synonymous_variant | 0.15 |
PPE35 | 2169125 | c.1488T>C | synonymous_variant | 0.1 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
kasA | 2518076 | c.-39C>T | upstream_gene_variant | 1.0 |
eis | 2715062 | p.His91Tyr | missense_variant | 0.13 |
folC | 2746486 | c.1113C>T | synonymous_variant | 0.15 |
Rv2752c | 3067024 | c.-833C>T | upstream_gene_variant | 0.13 |
ald | 3086788 | c.-32T>C | upstream_gene_variant | 1.0 |
fbiD | 3339734 | p.Ala206Gly | missense_variant | 0.14 |
Rv3083 | 3448331 | c.-173G>T | upstream_gene_variant | 0.13 |
fprA | 3473996 | c.-11_-10insA | upstream_gene_variant | 1.0 |
whiB7 | 3568621 | p.Cys20Tyr | missense_variant | 0.13 |
Rv3236c | 3613286 | c.-170C>G | upstream_gene_variant | 1.0 |
rpoA | 3878446 | p.Phe21Tyr | missense_variant | 0.13 |
embC | 4241231 | p.Arg457Trp | missense_variant | 0.12 |
embA | 4242643 | c.-590C>T | upstream_gene_variant | 1.0 |
embC | 4242803 | p.Val981Leu | missense_variant | 1.0 |
embB | 4247171 | c.658C>T | synonymous_variant | 0.12 |
ethR | 4327583 | p.Pro12Leu | missense_variant | 0.13 |
ethR | 4327597 | p.Thr17Ala | missense_variant | 0.1 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |