EBG00000313325 - n.1235C>A
Drug resistance types
186 Sensitive
2 RR-TB
7 HR-TB
15 MDR-TB
5 Pre-XDR-TB
0 XDR-TB
136 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage4.9 | 221 |
| lineage4 | 3 |
| lineage2.2.1 | 26 |
| lineage4.4.1.1 | 5 |
| lineage4.8 | 10 |
| lineage4.1.1.3 | 5 |
| lineage2.2.1.1 | 3 |
| lineage4.3.2.1 | 6 |
| lineage2.2.2;lineage4 | 2 |
| lineage4.3.3 | 9 |
| lineage1 | 1 |
| lineage4.2.2.2 | 3 |
| lineage4.5 | 1 |
| La1.6 | 2 |
| lineage4.3.4.1 | 2 |
| lineage3 | 2 |
| lineage4.6.1.1 | 3 |
| lineage4.1.1.1 | 1 |
| lineage3.1.1 | 2 |
| lineage5.1.1 | 2 |
| lineage4.6.2.2 | 3 |
| lineage4.2.1 | 1 |
| La1.8.1 | 5 |
| lineage4.1.2.1 | 2 |
| lineage1.1 | 1 |
| lineage1.2.1.2.1 | 1 |
| lineage1.2.2.1 | 2 |
| La1.2.BCG | 2 |
| lineage4.1.1 | 1 |
| lineage6.3.1 | 2 |
| lineage5 | 1 |
| 1 | |
| lineage4.1.2 | 3 |
| La1.8.1;lineage4.9 | 1 |
| lineage1.2.2.2 | 1 |
| lineage4.3.4.2.1 | 5 |
| lineage4.4.1.1.1 | 2 |
| lineage2.2.2 | 1 |
| lineage4.7 | 1 |
| lineage4.3.4.2 | 1 |
| lineage1.1.3.2 | 2 |
| lineage4.1.1.2 | 1 |
| lineage4.1.4 | 1 |
| lineage2.2.1;lineage4 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 351 |
Geographic prevalence
Country level data for this variant is available for 5 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR1208573 | Sensitive | lineage4.9 | None | SRR1208236 | Other | lineage4.9 | None | SRR7443736 | Sensitive | lineage4.9 | None | SRR7443752 | Sensitive | lineage4.9 | None | ERR2179816 | Sensitive | lineage4 | None | SRR1202407 | Other | lineage4.9 | None | SRR6981977 | Sensitive | lineage2.2.1 | None | SRR6982332 | Sensitive | lineage4.4.1.1 | None | ERR2515460 | Other | lineage4.8 | za | SRR1208567 | Sensitive | lineage4.9 | None | SRR1208545 | Other | lineage4.9 | None | SRR1208763 | Other | lineage4.9 | None | SRR1208561 | Other | lineage4.9 | None | SRR1202375 | Other | lineage4.9 | None | SRR6982146 | Sensitive | lineage4.1.1.3 | None | SRR7443761 | Sensitive | lineage4.9 | None | SRR1062860 | Sensitive | lineage2.2.1.1 | None | SRR1208900 | Other | lineage4.9 | None | ERR502484 | Sensitive | lineage4.9 | None | SRR7443747 | Sensitive | lineage4.9 | None | SRR1208990 | Sensitive | lineage4.9 | None | SRR1208342 | Other | lineage4.9 | None | SRR1208880 | Other | lineage4.9 | None | SRR1208836 | Other | lineage4.9 | None | SRR1140927 | Sensitive | lineage4.3.2.1 | None | SRR1013636 | Sensitive | lineage2.2.2;lineage4 | None | SRR1208576 | Sensitive | lineage4.9 | None | SRR2101774 | Sensitive | lineage2.2.1 | None | SRR6896340 | Sensitive | lineage4.4.1.1 | None | SRR1208281 | Sensitive | lineage4.9 | None | SRR1208283 | Sensitive | lineage4.9 | None | ERR3324355 | Sensitive | lineage4.1.1.3 | None | SRR7443737 | Sensitive | lineage4.9 | None | SRR1208793 | Other | lineage4.9 | None | SRR1208544 | Sensitive | lineage4.9 | None | SRR21714038 | Sensitive | lineage4.3.3 | None | SRR6982198 | HR-TB | lineage1 | None | SRR1208759 | Sensitive | lineage4.9 | None | SRR1209067 | Other | lineage4.9 | None | SRR1049569 | Sensitive | lineage4.2.2.2 | None | SRR1183121 | Other | lineage4.9 | None | SRR1209050 | Other | lineage4.9 | None | SRR6982362 | Sensitive | lineage4.3.2.1 | None | SRR1208645 | Sensitive | lineage4.9 | None | SRR6982419 | Other | lineage4.8 | None | SRR1208876 | Other | lineage4.9 | None | SRR2101711 | Sensitive | lineage2.2.1 | None | SRR1202413 | Sensitive | lineage4.9 | None | SRR1208353 | Other | lineage4.9 | None | ERR3324328 | MDR-TB | lineage2.2.1 | None | SRR2101691 | Other | lineage2.2.1 | None | ERR502485 | Sensitive | lineage4.9 | None | SRR1202378 | Other | lineage4.9 | None | SRR1208546 | Other | lineage4.9 | None | SRR1208536 | Other | lineage4.9 | None | SRR6397441 | Other | lineage4.5 | None | ERR502497 | Sensitive | lineage4.9 | None | SRR1208543 | Other | lineage4.9 | None | SRR7443756 | Sensitive | lineage4.9 | None | SRR1208174 | Other | lineage4.9 | None | SRR1208657 | Sensitive | lineage4.9 | None | SRR1208297 | Other | lineage4.9 | None | SRR1208460 | Other | lineage4.9 | None | SRR1202400 | Sensitive | lineage4.9 | None | SRR10993953 | Other | La1.6 | None | SRR1208777 | Other | lineage4.9 | None | SRR1208804 | Sensitive | lineage4.9 | None | SRR7443768 | Sensitive | lineage4.9 | None | SRR1208449 | Sensitive | lineage4.9 | None | SAMN02350456 | Sensitive | lineage4.3.2.1 | None | ERR5865343 | MDR-TB | lineage2.2.1 | None | SRR1208524 | Sensitive | lineage4.9 | None | SRR6982050 | Other | lineage4.3.4.1 | None | SRR1208908 | Sensitive | lineage4.9 | None | SRR1208422 | Other | lineage4.9 | None | SRR1209044 | Other | lineage4.9 | None | SRR21728339 | Other | lineage3 | None | SRR1208221 | Other | lineage4.9 | None | SRR1208436 | Other | lineage4.9 | None | SRR7504782 | Sensitive | lineage4.9 | None | SRR6824624 | Sensitive | lineage2.2.1 | None | SRR1011489 | Sensitive | lineage2.2.1.1 | None | SRR1173717 | MDR-TB | lineage4.6.1.1 | None | SRR2101786 | Sensitive | lineage4.4.1.1 | None | SRR6982371 | Sensitive | lineage4.1.1.1 | None | SRR1208471 | Other | lineage4.9 | None | SRR6856094 | Other | lineage2.2.1 | None | SRR1202408 | Other | lineage4.9 | None | SRR1208683 | Other | lineage4.9 | None | SRR1208888 | Sensitive | lineage4.9 | None | SRR7443767 | Sensitive | lineage4.9 | None | SRR1202599 | Other | lineage4.9 | None | SRR1208557 | Other | lineage4.9 | None | SRR7443733 | Sensitive | lineage4.9 | None | ERR2515484 | Sensitive | lineage4.8 | None | SRR1208194 | Other | lineage4.9 | None | SRR7443734 | Sensitive | lineage4.9 | None | SRR12882768 | RR-TB | lineage3.1.1 | None | ERR1873482 | Pre-XDR-TB | lineage2.2.1 | None | SRR1208871 | Sensitive | lineage4.9 | None | SRR1181161 | Other | lineage4.9 | None | ERR702399 | Sensitive | lineage5.1.1 | gh | ERR3335798 | MDR-TB | lineage2.2.1 | None | ERR502472 | Sensitive | lineage4.6.2.2 | None | SRR1208612 | Other | lineage4.9 | None | SRR1202405 | Sensitive | lineage4.9 | None | SRR1202714 | Sensitive | lineage4.9 | None | SRR1202569 | Other | lineage4.9 | None | SRR6982148 | Sensitive | lineage2.2.1 | None | SRR1208947 | Other | lineage4.9 | None | SRR7443750 | Sensitive | lineage4.9 | None | SRR7443724 | Sensitive | lineage4.9 | None | SRR2101816 | Other | lineage4.8 | None | SRR1209049 | Other | lineage4.9 | None | SRR1208451 | Sensitive | lineage4.9 | None | ERR5864323 | MDR-TB | lineage4.2.1 | None | SRR1202589 | Other | lineage4.9 | None | SRR1202702 | Other | lineage4.9 | None | SRR7236374 | Other | La1.8.1 | None | SRR1180046 | Other | lineage4.9 | None | SRR1049031 | Sensitive | lineage4.9 | None | SRR7443722 | Sensitive | lineage4.9 | None | SRR1173361 | MDR-TB | lineage4.6.1.1 | None | SRR11294512 | Other | La1.8.1 | None | SRR6981981 | Sensitive | lineage4.3.3 | None | SRR6856032 | Sensitive | lineage2.2.1 | None | SRR1208906 | Other | lineage4.9 | None | ERR502517 | Other | lineage5.1.1 | None | SRR1208423 | Sensitive | lineage4.9 | None | SRR1208555 | Sensitive | lineage4.9 | None | SRR1202489 | Other | lineage4.9 | None | SRR1208368 | Other | lineage4.9 | None | ERR3324362 | HR-TB | lineage4.1.2.1 | None | SRR1208756 | Other | lineage4.9 | None | SRR1202547 | Sensitive | lineage4.9 | None | SRR1208577 | Other | lineage4.9 | None | SRR12199472 | Sensitive | lineage1.1 | None | SRR7443726 | Sensitive | lineage4.9 | None | SRR1208563 | Sensitive | lineage4.9 | None | SRR1172808 | Other | lineage4.9 | None | SRR1202396 | Other | lineage4.9 | None | SRR1208690 | Other | lineage4.9 | None | SRR1208614 | Other | lineage4.9 | None | SRR21764246 | Other | lineage4.9 | None | SRR7645834 | Other | lineage2.2.1 | None | SRR11972274 | RR-TB | lineage1.2.1.2.1 | None | SRR1208660 | Sensitive | lineage4.9 | None | SRR1208744 | Other | lineage4.9 | None | SRR1049568 | Sensitive | lineage4.2.2.2 | None | SRR6981948 | Sensitive | lineage4.3.2.1 | None | SRR1208378 | Other | lineage4.9 | None | SRR1208798 | Other | lineage4.9 | None | SRR7444102 | Sensitive | lineage4.9 | None | SRR1208535 | Sensitive | lineage4.9 | None | SAMN02350450 | Sensitive | lineage1.2.2.1 | None | SRR1208486 | Other | lineage4.9 | None | SRR1208783 | Other | lineage4.9 | None | SRR1208603 | Other | lineage4.9 | None | SRR1915485 | Other | La1.2.BCG | None | SRR2101681 | Sensitive | lineage4.8 | None | SRR1183707 | Other | lineage4.9 | None | SRR1202417 | Other | lineage4.9 | None | SRR1183288 | Other | lineage4.9 | None | ERR502486 | Sensitive | lineage4.9 | None | SRR7443776 | Sensitive | lineage4.9 | None | SRR1208686 | Sensitive | lineage4.9 | None | SRR1208872 | Sensitive | lineage4.9 | None | SRR5341417 | HR-TB | lineage3 | None | SRR6982014 | Sensitive | lineage4.1.1 | None | ERR3804142 | Sensitive | lineage6.3.1 | None | SRR1208998 | Other | lineage4.9 | None | ERR2516270 | Pre-XDR-TB | lineage2.2.1 | None | SRR1208421 | Other | lineage4.9 | None | SRR6982106 | Sensitive | lineage4.8 | None | SRR6982194 | Other | lineage2.2.1 | None | SRR7443731 | Sensitive | lineage4.9 | None | SRR6982104 | Sensitive | lineage2.2.1 | None | SRR1208249 | Sensitive | lineage4.9 | None | SRR7443732 | Sensitive | lineage4.9 | None | SRR7444098 | Sensitive | lineage4.9 | None | SRR1208650 | Other | lineage4.9 | None | SRR1202556 | Other | lineage4.9 | None | SRR1208261 | Sensitive | lineage4.9 | None | SRR7504776 | Sensitive | lineage4.9 | None | ERR439982 | Sensitive | lineage5 | None | SRR6982196 | Sensitive | None | SRR1208666 | Other | lineage4.9 | None | ERR502483 | Sensitive | lineage4.9 | None | SRR7236181 | Other | La1.8.1 | None | SRR1208377 | Other | lineage4.9 | None | SRR1208532 | Other | lineage4.9 | None | ERR502489 | Sensitive | lineage4.9 | None | SRR6982043 | Sensitive | lineage4.4.1.1 | None | SRR1169301 | Pre-XDR-TB | lineage4.1.1.3 | None | ERR502493 | Sensitive | lineage4.9 | None | SRR1208978 | Sensitive | lineage4.9 | None | SRR18911000 | Sensitive | lineage2.2.1 | None | ERR181864 | Sensitive | lineage3.1.1 | None | SRR1202516 | Other | lineage4.9 | None | SRR2101662 | Sensitive | lineage4.3.3 | None | SRR1208695 | Sensitive | lineage4.9 | None | SRR1208424 | Other | lineage4.9 | None | SRR1208915 | Other | lineage4.9 | None | SRR1202573 | Other | lineage4.9 | None | SRR7444074 | Sensitive | lineage4.9 | None | SRR7443757 | Sensitive | lineage4.9 | None | SRR21676318 | Sensitive | lineage2.2.1 | None | SRR7236369 | Other | La1.8.1 | None | SRR1208924 | Sensitive | lineage4.9 | None | SAMN02567676 | MDR-TB | lineage4.6.1.1 | None | SRR1209046 | Sensitive | lineage4.9 | None | SRR6981968 | Sensitive | lineage4.1.2 | None | SRR6982174 | Sensitive | lineage4.3.3 | None | SRR1202507 | Other | lineage4.9 | None | SRR1208847 | Other | lineage4.9 | None | SRR7444072 | Sensitive | lineage4.9 | None | SRR1019130 | Sensitive | lineage4.3.2.1 | None | SRR7443785 | Sensitive | lineage4.9 | None | SRR7504786 | Sensitive | lineage4.9 | None | SRR1208885 | Sensitive | lineage4.9 | None | SRR1208721 | Other | lineage4.9 | None | SRR1180252 | Other | lineage4.9 | None | SRR1208791 | Other | lineage4.9 | None | SRR11972420 | MDR-TB | lineage2.2.1 | None | SRR1208487 | Other | lineage4.9 | None | SRR1184383 | Other | lineage4.9 | None | SRR1208655 | Other | lineage4.9 | None | SRR2101689 | Sensitive | lineage4.3.4.1 | None | SRR2101540 | Sensitive | lineage4.3.2.1 | None | SRR1202597 | Other | lineage4.9 | None | SRR1208264 | Sensitive | lineage4.9 | None | SRR6896178 | Sensitive | lineage2.2.1 | None | SRR1208530 | Other | lineage4.9 | None | SRR1202537 | Other | lineage4.9 | None | SRR1791899 | Sensitive | La1.8.1;lineage4.9 | None | SRR1208441 | Sensitive | lineage4.9 | None | SRR2101693 | Sensitive | lineage4.1.2 | None | SRR2101312 | MDR-TB | lineage2.2.1 | None | SRR1208752 | Other | lineage4.9 | None | SRR1208957 | Sensitive | lineage4.9 | None | SRR1209048 | Other | lineage4.9 | None | SRR6855718 | Other | lineage4.8 | None | SRR1208639 | Other | lineage4.9 | None | SRR7443723 | Sensitive | lineage4.9 | None | SRR1202415 | Sensitive | lineage4.9 | None | SRR1062863 | Sensitive | lineage1.2.2.1 | None | SRR3105736 | Sensitive | lineage1.2.2.2 | None | SRR1209032 | Sensitive | lineage4.9 | None | SRR1208468 | Other | lineage4.9 | None | SRR6982430 | Sensitive | lineage4.3.4.2.1 | None | SRR7086711 | Other | La1.2.BCG | None | ERR1815548 | Other | La1.8.1 | None | SRR2101659 | Other | lineage4.4.1.1.1 | None | SRR21675637 | Sensitive | lineage4.3.3 | None | SRR7443751 | Sensitive | lineage4.9 | None | SRR1209030 | Sensitive | lineage4.9 | None | SRR1208946 | Other | lineage4.9 | None | SRR1208430 | Sensitive | lineage4.9 | None | ERR3324354 | Sensitive | lineage4.8 | None | SRR6982139 | Sensitive | lineage4.9 | None | SRR2101803 | Sensitive | lineage4.3.3 | None | SRR1208565 | Other | lineage4.9 | None | SRR6855915 | Sensitive | lineage4.9 | None | SRR1208923 | Sensitive | lineage4.9 | None | SRR6982494 | Other | lineage2.2.2 | None | SRR6855967 | Sensitive | lineage4.1.2 | None | SRR1208306 | Other | lineage4.9 | None | SRR7443727 | Sensitive | lineage4.9 | None | SRR1013637 | Sensitive | lineage2.2.2;lineage4 | None | SRR6982337 | Sensitive | lineage4.7 | None | SRR1208677 | Other | lineage4.9 | None | SRR1202412 | Sensitive | lineage4.9 | None | SRR10129602 | Sensitive | lineage4.3.4.2 | None | SAMN02350447 | Sensitive | lineage2.2.1.1 | None | SRR1208295 | Sensitive | lineage4.9 | None | ERR3324375 | Other | lineage1.1.3.2 | None | SRR1208925 | Other | lineage4.9 | None | SRR10993936 | Other | La1.6 | None | ERR502498 | Sensitive | lineage4.9 | None | SRR1208648 | Sensitive | lineage4.9 | None | SRR2101709 | Sensitive | lineage4.1.1.3 | None | SRR1208586 | Other | lineage4.9 | None | ERR5865119 | MDR-TB | lineage2.2.1 | None | SRR6982088 | Other | lineage4.1.1.2 | None | ERR3324347 | Sensitive | lineage4.1.2.1 | None | SRR6982058 | HR-TB | lineage2.2.1 | None | ERR3324325 | MDR-TB | lineage4.6.2.2 | None | SRR6855851 | Other | lineage4.3.4.2.1 | None | SRR1208476 | Other | lineage4.9 | None | SRR7443738 | Sensitive | lineage4.9 | None | SRR1208446 | Sensitive | lineage4.9 | None | SRR1208647 | Sensitive | lineage4.9 | None | SRR7504773 | Sensitive | lineage4.9 | None | SRR1202713 | Sensitive | lineage4.9 | None | SRR1208499 | Other | lineage4.9 | None | SRR1208980 | Sensitive | lineage4.9 | None | SRR7504779 | Sensitive | lineage4.9 | None | SRR7443730 | Sensitive | lineage4.9 | None | SRR1208635 | Other | lineage4.9 | None | SRR1208537 | Other | lineage4.9 | None | SRR1208395 | Other | lineage4.9 | None | SRR7443769 | Sensitive | lineage4 | None | SRR6982405 | Sensitive | lineage4.4.1.1 | None | ERR502492 | Sensitive | lineage4.9 | None | SRR1208861 | Other | lineage4.9 | None | SRR1202433 | Sensitive | lineage4.9 | None | ERR4769518 | Sensitive | lineage4.9 | None | ERR9787167 | Sensitive | lineage6.3.1 | None | SRR1208173 | Sensitive | lineage4.9 | None | ERR473298 | Sensitive | lineage4.6.2.2 | None | SRR1202536 | Other | lineage4.9 | None | ERR502490 | Sensitive | lineage4.9 | None | ERR3324351 | HR-TB | lineage4.1.4 | None | SRR7443725 | Sensitive | lineage4.9 | None | ERR027451 | Pre-XDR-TB | lineage2.2.1 | ru | ERR3324373 | MDR-TB | lineage2.2.1 | None | SRR6982292 | Other | lineage4.4.1.1.1 | None | SRR1208668 | Other | lineage4.9 | None | SRR1202397 | Sensitive | lineage4.9 | None | SRR6855917 | Sensitive | lineage4.8 | None | ERR2515916 | Other | lineage4.3.4.2.1 | za | SRR1208397 | Other | lineage4.9 | None | SRR1208274 | Sensitive | lineage4.9 | None | ERR2179857 | Sensitive | lineage4 | None | SRR6982448 | Sensitive | lineage2.2.1;lineage4 | None | SRR1208165 | Sensitive | lineage4.9 | None | SRR1208464 | Other | lineage4.9 | None | ERR926168 | Sensitive | lineage4.9 | None | SRR6982558 | Sensitive | lineage4.3.4.2.1 | None | SRR1202656 | Sensitive | lineage4.9 | None | SRR2101685 | Sensitive | lineage4.9 | None | ERR2516375 | MDR-TB | lineage4.3.3 | None | SRR1208768 | Other | lineage4.9 | None | SRR1208694 | Sensitive | lineage4.9 | None | SRR1208196 | Sensitive | lineage4.9 | None | SRR1202706 | Other | lineage4.9 | None | SRR1208914 | Other | lineage4.9 | None | ERR2660524 | HR-TB | lineage1.1.3.2 | None | ERR751569 | MDR-TB | lineage4.3.3 | None | SRR1202451 | Sensitive | lineage4.9 | None | ERR212047 | Sensitive | lineage4.8 | mw | ERR176771 | Sensitive | lineage4.3.4.2.1 | None | SRR6896339 | MDR-TB | lineage2.2.1 | None | SRR1049030 | Sensitive | lineage4.9 | None | ERR1034765 | HR-TB | lineage4.3.3 | None | SRR1208465 | Other | lineage4.9 | None | SRR1209039 | Sensitive | lineage4.9 | None | SRR1202495 | Sensitive | lineage4.9 | None | SRR1202544 | Other | lineage4.9 | None | SAMN02380985 | Sensitive | lineage4.2.2.2 | None | SRR1169203 | Pre-XDR-TB | lineage4.1.1.3 | None |
|---|
