TB-Profiler result

Run: SRR6982196
Summary

Run ID: SRR6982196

Sample name:

Date: 04-04-2023 18:30:14

Number of reads: 198141

Percentage reads mapped: 28.75

Strain:

Drug-resistance: Sensitive

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Drug resistance: This table reports drug-resistance associated mutations found in known resistance genes
Drug Resistance Supporting mutations
Lineage Table: The lineage is inferred by analysing lineage specific SNPs
Lineage Family Main Spoligotype RDs Frequency
lineage4.3.3 Euro-American (LAM) LAM;T RD115 0.86
Drug resistance-Associated Mutations: This table reports mutations found in candidate resistance genes which have been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction Drugs
Non-Associated Mutations: This table reports mutations found in candidate resistance genes which have not been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction
gyrB 5318 p.Arg27Gly missense_variant 0.12
gyrB 5520 p.Pro94Leu missense_variant 0.33
gyrA 6676 c.-626T>C upstream_gene_variant 0.17
gyrA 7099 c.-203G>A upstream_gene_variant 0.13
gyrA 7100 c.-202T>C upstream_gene_variant 0.12
gyrA 7114 c.-188C>G upstream_gene_variant 0.14
gyrA 7123 c.-179C>G upstream_gene_variant 0.14
gyrA 7129 c.-173T>G upstream_gene_variant 0.14
gyrA 7136 c.-166T>C upstream_gene_variant 0.14
gyrA 7141 c.-161T>C upstream_gene_variant 0.15
gyrA 7144 c.-158A>G upstream_gene_variant 0.17
gyrA 7150 c.-152G>T upstream_gene_variant 0.17
gyrA 7153 c.-149G>C upstream_gene_variant 0.17
gyrA 7156 c.-146C>T upstream_gene_variant 0.18
gyrA 7159 c.-143C>T upstream_gene_variant 0.18
gyrA 7165 c.-137C>T upstream_gene_variant 0.18
gyrA 7174 c.-128C>T upstream_gene_variant 0.18
gyrA 7177 c.-125G>A upstream_gene_variant 0.18
gyrA 7178 c.-124T>C upstream_gene_variant 0.18
gyrA 7186 c.-116C>G upstream_gene_variant 0.14
gyrA 7189 c.-113C>T upstream_gene_variant 0.13
gyrA 7190 c.-112C>T upstream_gene_variant 0.13
gyrB 7210 p.Asp657Glu missense_variant 0.15
gyrA 7362 p.Glu21Gln missense_variant 1.0
gyrA 7585 p.Ser95Thr missense_variant 1.0
gyrA 7757 p.Phe152Leu missense_variant 0.4
gyrA 8040 p.Gly247Ser missense_variant 0.62
gyrA 9304 p.Gly668Asp missense_variant 1.0
fgd1 491742 c.960T>C synonymous_variant 0.22
mshA 575527 c.180G>T synonymous_variant 0.15
mshA 575907 p.Ala187Val missense_variant 0.29
ccsA 620625 p.Ile245Met missense_variant 0.13
rpoB 760389 p.Ser195Gly missense_variant 0.2
rpoB 760400 c.594G>C synonymous_variant 0.17
rpoB 760406 c.600G>C synonymous_variant 0.2
rpoB 760407 p.Ser201Gly missense_variant 0.2
rpoB 760415 c.609C>T synonymous_variant 0.2
rpoB 760418 c.612G>A synonymous_variant 0.2
rpoB 760430 c.624T>C synonymous_variant 0.18
rpoB 760436 c.630C>G synonymous_variant 0.18
rpoB 760457 c.651C>T synonymous_variant 0.15
rpoB 760475 c.669A>G synonymous_variant 0.13
rpoB 760481 c.675G>C synonymous_variant 0.15
rpoB 760484 c.678A>G synonymous_variant 0.15
rpoB 760487 c.681G>C synonymous_variant 0.15
rpoB 760497 c.691C>T synonymous_variant 0.15
rpoB 760502 c.696C>G synonymous_variant 0.15
rpoB 760511 c.705G>C synonymous_variant 0.12
rpoB 760522 p.Ser239Asn missense_variant 0.13
rpoB 760532 c.726T>C synonymous_variant 0.13
rpoB 760541 c.735G>C synonymous_variant 0.13
rpoB 760561 c.757_758delCG frameshift_variant 0.15
rpoB 760571 c.765G>C synonymous_variant 0.14
rpoB 760588 p.Thr261Ile missense_variant 0.17
rpoB 760591 p.Val262Ala missense_variant 0.22
rpoB 760595 c.789C>A synonymous_variant 0.22
rpoB 760596 p.Thr264Pro missense_variant 0.22
rpoB 760611 c.805T>C synonymous_variant 0.22
rpoB 761999 c.2193G>C synonymous_variant 0.13
rpoB 762008 c.2202C>T synonymous_variant 0.14
rpoB 762014 c.2208C>G synonymous_variant 0.13
rpoB 762038 c.2232C>T synonymous_variant 0.15
rpoB 762047 c.2241G>A synonymous_variant 0.15
rpoB 762053 c.2247T>C synonymous_variant 0.15
rpoB 762056 c.2250G>A synonymous_variant 0.15
rpoB 762065 c.2259T>G synonymous_variant 0.15
rpoB 762079 p.Leu758Gln missense_variant 0.17
rpoB 762083 c.2277T>C synonymous_variant 0.17
rpoB 762086 c.2280G>C synonymous_variant 0.17
rpoB 762101 c.2295C>G synonymous_variant 0.2
rpoB 762114 p.Ile770Val missense_variant 0.18
rpoB 762122 c.2316C>T synonymous_variant 0.18
rpoB 762131 c.2325C>G synonymous_variant 0.18
rpoB 762134 c.2328C>T synonymous_variant 0.18
rpoB 762140 c.2334G>C synonymous_variant 0.18
rpoB 762143 c.2337T>C synonymous_variant 0.18
rpoB 762149 c.2343G>C synonymous_variant 0.2
rpoB 762158 c.2352G>C synonymous_variant 0.2
rpoC 763662 p.Ala98Val missense_variant 0.29
rpoC 764803 c.1434C>T synonymous_variant 0.15
rpoC 764810 p.Pro481Ala missense_variant 0.15
rpoC 764815 c.1446A>G synonymous_variant 0.15
rpoC 764827 c.1458G>C synonymous_variant 0.14
rpoC 764858 c.1489T>C synonymous_variant 0.12
rpoC 764887 c.1518G>C synonymous_variant 0.11
rpoC 764911 c.1542A>G synonymous_variant 0.12
rpoC 764912 p.Met515Leu missense_variant 0.12
rpoC 764932 c.1563C>A synonymous_variant 0.12
rpoC 764948 c.1579T>C synonymous_variant 0.12
rpoC 764995 c.1626C>G synonymous_variant 0.55
rpoC 765339 p.Gln657Arg missense_variant 0.2
rpoC 766414 p.Phe1015Leu missense_variant 0.29
rpoC 766807 c.3438T>A synonymous_variant 0.12
rpoC 766934 p.Glu1189Lys missense_variant 0.22
mmpL5 775639 p.Ile948Val missense_variant 1.0
mmpS5 778859 p.Val16Ala missense_variant 0.17
rpsL 781395 c.-165T>C upstream_gene_variant 1.0
rpsL 781572 p.Gln5Asn missense_variant 0.33
rpsL 781586 c.27C>T synonymous_variant 0.29
rpsL 781595 c.36T>C synonymous_variant 0.29
rpsL 781608 p.Ser17Ala missense_variant 0.29
rpsL 781616 c.57C>G synonymous_variant 0.22
rpsL 781628 c.69T>C synonymous_variant 0.25
rpsL 781631 c.72G>C synonymous_variant 0.25
rpsL 781649 c.90T>C synonymous_variant 0.25
rpsL 781655 c.96T>C synonymous_variant 0.22
rpsL 781658 c.99A>G synonymous_variant 0.22
rpsL 781670 c.111G>C synonymous_variant 0.13
rpsL 781682 c.123T>G synonymous_variant 0.13
rplC 801334 p.Thr176Ser missense_variant 0.22
rplC 801403 p.Pro199Thr missense_variant 0.22
Rv1258c 1407063 c.277delG frameshift_variant 0.5
Rv1258c 1407358 c.-18G>T upstream_gene_variant 0.29
embR 1416703 p.Tyr215* stop_gained 0.22
rrs 1471659 n.-187C>T upstream_gene_variant 1.0
rrs 1471792 n.-54T>C upstream_gene_variant 0.4
rrs 1471896 n.51T>C non_coding_transcript_exon_variant 0.33
rrs 1471900 n.55C>T non_coding_transcript_exon_variant 0.33
rrs 1472094 n.249T>A non_coding_transcript_exon_variant 0.15
rrs 1472102 n.257G>A non_coding_transcript_exon_variant 0.27
rrs 1472106 n.261G>A non_coding_transcript_exon_variant 0.31
rrs 1472112 n.267C>T non_coding_transcript_exon_variant 0.28
rrs 1472113 n.268T>C non_coding_transcript_exon_variant 0.28
rrs 1472122 n.277G>A non_coding_transcript_exon_variant 0.33
rrs 1472127 n.282C>T non_coding_transcript_exon_variant 0.33
rrs 1472129 n.284G>C non_coding_transcript_exon_variant 0.44
rrs 1472137 n.292G>A non_coding_transcript_exon_variant 0.61
rrs 1472150 n.305T>A non_coding_transcript_exon_variant 0.68
rrs 1472151 n.306C>T non_coding_transcript_exon_variant 0.68
rrs 1472172 n.327T>C non_coding_transcript_exon_variant 0.65
rrs 1472203 n.358G>A non_coding_transcript_exon_variant 0.29
rrs 1472210 n.365A>C non_coding_transcript_exon_variant 0.18
rrs 1472344 n.499C>T non_coding_transcript_exon_variant 0.67
rrs 1472378 n.533G>T non_coding_transcript_exon_variant 0.55
rrs 1472379 n.534T>G non_coding_transcript_exon_variant 0.6
rrs 1472382 n.537G>A non_coding_transcript_exon_variant 0.6
rrs 1472400 n.555C>T non_coding_transcript_exon_variant 0.44
rrs 1472507 n.662C>G non_coding_transcript_exon_variant 0.55
rrs 1472517 n.672T>A non_coding_transcript_exon_variant 0.68
rrs 1472518 n.673G>C non_coding_transcript_exon_variant 0.68
rrs 1472530 n.685G>A non_coding_transcript_exon_variant 0.79
rrs 1472537 n.692C>T non_coding_transcript_exon_variant 0.79
rrs 1472541 n.696T>G non_coding_transcript_exon_variant 0.79
rrs 1472544 n.699C>G non_coding_transcript_exon_variant 0.79
rrs 1472545 n.700A>T non_coding_transcript_exon_variant 0.8
rrs 1472557 n.712G>A non_coding_transcript_exon_variant 0.85
rrs 1472570 n.725G>A non_coding_transcript_exon_variant 0.9
rrs 1472571 n.726G>C non_coding_transcript_exon_variant 0.9
rrs 1472579 n.734G>T non_coding_transcript_exon_variant 0.89
rrs 1472581 n.736A>T non_coding_transcript_exon_variant 0.89
rrs 1472655 n.810G>A non_coding_transcript_exon_variant 0.91
rrs 1472658 n.813G>A non_coding_transcript_exon_variant 0.91
rrs 1472661 n.816A>G non_coding_transcript_exon_variant 0.91
rrs 1472665 n.820G>A non_coding_transcript_exon_variant 0.91
rrs 1472669 n.824_825insTAGG non_coding_transcript_exon_variant 0.94
rrs 1472695 n.850C>T non_coding_transcript_exon_variant 0.94
rrs 1472697 n.852T>C non_coding_transcript_exon_variant 0.95
rrs 1472713 n.868T>C non_coding_transcript_exon_variant 0.97
rrs 1472716 n.871C>T non_coding_transcript_exon_variant 0.97
rrs 1472734 n.889C>T non_coding_transcript_exon_variant 0.94
rrs 1472741 n.896G>A non_coding_transcript_exon_variant 0.95
rrs 1472744 n.899A>G non_coding_transcript_exon_variant 0.95
rrs 1472781 n.936C>T non_coding_transcript_exon_variant 0.91
rrs 1472793 n.948A>T non_coding_transcript_exon_variant 0.87
rrs 1472803 n.958T>A non_coding_transcript_exon_variant 0.84
rrs 1472824 n.979T>A non_coding_transcript_exon_variant 0.74
rrs 1472827 n.982G>T non_coding_transcript_exon_variant 0.69
rrs 1472828 n.983T>C non_coding_transcript_exon_variant 0.69
rrs 1472836 n.991G>C non_coding_transcript_exon_variant 0.43
rrs 1472838 n.993A>T non_coding_transcript_exon_variant 0.43
rrs 1472845 n.1000G>A non_coding_transcript_exon_variant 0.43
rrs 1472846 n.1001C>A non_coding_transcript_exon_variant 0.41
rrs 1472847 n.1002G>T non_coding_transcript_exon_variant 0.39
rrs 1472848 n.1003T>C non_coding_transcript_exon_variant 0.41
rrs 1472859 n.1014_1015insA non_coding_transcript_exon_variant 0.39
rrs 1472863 n.1018T>C non_coding_transcript_exon_variant 0.39
rrs 1472873 n.1028C>G non_coding_transcript_exon_variant 0.41
rrs 1472875 n.1030T>A non_coding_transcript_exon_variant 0.41
rrs 1472877 n.1032T>A non_coding_transcript_exon_variant 0.41
rrs 1472880 n.1035_1036insA non_coding_transcript_exon_variant 0.46
rrs 1472895 n.1050C>T non_coding_transcript_exon_variant 0.65
rrs 1472953 n.1108_1109insA non_coding_transcript_exon_variant 0.57
rrs 1472957 n.1112C>T non_coding_transcript_exon_variant 0.63
rrs 1472958 n.1114delT non_coding_transcript_exon_variant 0.57
rrs 1472969 n.1125_1126delCG non_coding_transcript_exon_variant 0.65
rrs 1472973 n.1128A>T non_coding_transcript_exon_variant 0.59
rrs 1472974 n.1129A>C non_coding_transcript_exon_variant 0.59
rrs 1472975 n.1130T>A non_coding_transcript_exon_variant 0.59
rrs 1472977 n.1132G>T non_coding_transcript_exon_variant 0.61
rrs 1472982 n.1137G>C non_coding_transcript_exon_variant 0.61
rrs 1473002 n.1157G>T non_coding_transcript_exon_variant 0.64
rrs 1473004 n.1159T>A non_coding_transcript_exon_variant 0.64
rrs 1473008 n.1163C>A non_coding_transcript_exon_variant 0.64
rrs 1473009 n.1164T>C non_coding_transcript_exon_variant 0.69
rrs 1473035 n.1190G>A non_coding_transcript_exon_variant 0.74
rrs 1473053 n.1208T>A non_coding_transcript_exon_variant 0.83
rrs 1473056 n.1211A>T non_coding_transcript_exon_variant 0.85
rrs 1473062 n.1217T>A non_coding_transcript_exon_variant 0.85
rrs 1473068 n.1223A>G non_coding_transcript_exon_variant 0.83
rrs 1473080 n.1235C>A non_coding_transcript_exon_variant 0.84
rrs 1473082 n.1237G>A non_coding_transcript_exon_variant 0.86
rrs 1473084 n.1239T>A non_coding_transcript_exon_variant 0.82
rrs 1473094 n.1249T>A non_coding_transcript_exon_variant 0.79
rrs 1473099 n.1254T>A non_coding_transcript_exon_variant 0.79
rrs 1473100 n.1255G>A non_coding_transcript_exon_variant 0.79
rrs 1473115 n.1270G>C non_coding_transcript_exon_variant 0.78
rrs 1473121 n.1276T>C non_coding_transcript_exon_variant 0.77
rrs 1473122 n.1277T>A non_coding_transcript_exon_variant 0.77
rrs 1473123 n.1278A>C non_coding_transcript_exon_variant 0.77
rrs 1473127 n.1282G>T non_coding_transcript_exon_variant 0.77
rrs 1473129 n.1284C>T non_coding_transcript_exon_variant 0.8
rrs 1473131 n.1286G>T non_coding_transcript_exon_variant 0.81
rrs 1473147 n.1302G>C non_coding_transcript_exon_variant 0.82
rrs 1473148 n.1303G>A non_coding_transcript_exon_variant 0.82
rrs 1473163 n.1318C>T non_coding_transcript_exon_variant 0.82
rrs 1473164 n.1319C>G non_coding_transcript_exon_variant 0.82
rrs 1473172 n.1327T>C non_coding_transcript_exon_variant 0.8
rrs 1473173 n.1328C>T non_coding_transcript_exon_variant 0.8
rrs 1473177 n.1332G>A non_coding_transcript_exon_variant 0.81
rrs 1473192 n.1347A>G non_coding_transcript_exon_variant 0.82
rrs 1473205 n.1360T>C non_coding_transcript_exon_variant 0.79
rrs 1473248 n.1403G>A non_coding_transcript_exon_variant 0.25
rrs 1473249 n.1404T>C non_coding_transcript_exon_variant 0.25
rrs 1473252 n.1407T>C non_coding_transcript_exon_variant 0.25
rrs 1473255 n.1410A>G non_coding_transcript_exon_variant 0.25
rrs 1473259 n.1414C>T non_coding_transcript_exon_variant 0.25
rrs 1473260 n.1415G>T non_coding_transcript_exon_variant 0.25
rrs 1473274 n.1429C>T non_coding_transcript_exon_variant 0.18
rrs 1473276 n.1431A>G non_coding_transcript_exon_variant 0.18
rrs 1473280 n.1435G>A non_coding_transcript_exon_variant 0.18
rrs 1473281 n.1436C>G non_coding_transcript_exon_variant 0.18
rrs 1473282 n.1437C>G non_coding_transcript_exon_variant 0.18
rrs 1473290 n.1445C>T non_coding_transcript_exon_variant 0.19
rrs 1473291 n.1446G>A non_coding_transcript_exon_variant 0.19
rrs 1473296 n.1451G>C non_coding_transcript_exon_variant 0.19
rrs 1473297 n.1452G>C non_coding_transcript_exon_variant 0.19
rrs 1473301 n.1456T>C non_coding_transcript_exon_variant 0.19
rrs 1473303 n.1458T>C non_coding_transcript_exon_variant 0.17
rrs 1473315 n.1470T>C non_coding_transcript_exon_variant 0.18
rrs 1473316 n.1471C>A non_coding_transcript_exon_variant 0.18
rrs 1473318 n.1473G>A non_coding_transcript_exon_variant 0.18
rrs 1473319 n.1474C>T non_coding_transcript_exon_variant 0.18
rrs 1473327 n.1482A>G non_coding_transcript_exon_variant 0.22
rrs 1473328 n.1483C>T non_coding_transcript_exon_variant 0.26
rrs 1473352 n.1507C>T non_coding_transcript_exon_variant 0.24
rrl 1473746 n.90delC non_coding_transcript_exon_variant 0.25
rrl 1473750 n.93C>G non_coding_transcript_exon_variant 0.25
rrl 1473756 n.99G>T non_coding_transcript_exon_variant 0.25
rrl 1473758 n.101G>T non_coding_transcript_exon_variant 0.25
rrl 1473765 n.108A>G non_coding_transcript_exon_variant 0.25
rrl 1473766 n.109G>A non_coding_transcript_exon_variant 0.25
rrl 1473789 n.132G>C non_coding_transcript_exon_variant 0.25
rrl 1474218 n.561T>A non_coding_transcript_exon_variant 0.42
rrl 1474228 n.571T>C non_coding_transcript_exon_variant 0.43
rrl 1474236 n.579G>A non_coding_transcript_exon_variant 0.58
rrl 1474252 n.595T>A non_coding_transcript_exon_variant 0.38
rrl 1474253 n.596A>T non_coding_transcript_exon_variant 0.38
rrl 1474275 n.618T>G non_coding_transcript_exon_variant 0.3
rrl 1474276 n.619C>T non_coding_transcript_exon_variant 0.3
rrl 1474277 n.620C>A non_coding_transcript_exon_variant 0.3
rrl 1474692 n.1035G>T non_coding_transcript_exon_variant 0.18
rrl 1474740 n.1083G>T non_coding_transcript_exon_variant 0.31
rrl 1474747 n.1090C>A non_coding_transcript_exon_variant 0.38
rrl 1474753 n.1097delC non_coding_transcript_exon_variant 0.47
rrl 1474777 n.1120T>C non_coding_transcript_exon_variant 0.58
rrl 1474782 n.1125G>A non_coding_transcript_exon_variant 0.5
rrl 1474790 n.1133C>T non_coding_transcript_exon_variant 0.5
rrl 1474794 n.1137C>A non_coding_transcript_exon_variant 0.5
rrl 1474797 n.1140_1141insTATA non_coding_transcript_exon_variant 0.48
rrl 1474800 n.1144_1147delGTGC non_coding_transcript_exon_variant 0.53
rrl 1474812 n.1155G>A non_coding_transcript_exon_variant 0.6
rrl 1474823 n.1166C>G non_coding_transcript_exon_variant 0.64
rrl 1474827 n.1170C>T non_coding_transcript_exon_variant 0.67
rrl 1474830 n.1173A>T non_coding_transcript_exon_variant 0.67
rrl 1474831 n.1174A>T non_coding_transcript_exon_variant 0.69
rrl 1474844 n.1187G>T non_coding_transcript_exon_variant 0.75
rrl 1474866 n.1209C>A non_coding_transcript_exon_variant 0.79
rrl 1474869 n.1212G>T non_coding_transcript_exon_variant 0.8
rrl 1474896 n.1239A>G non_coding_transcript_exon_variant 0.61
rrl 1474902 n.1245T>C non_coding_transcript_exon_variant 0.54
rrl 1474904 n.1247G>C non_coding_transcript_exon_variant 0.45
rrl 1474913 n.1256T>A non_coding_transcript_exon_variant 0.45
rrl 1474920 n.1263G>C non_coding_transcript_exon_variant 0.27
rrl 1475122 n.1465C>T non_coding_transcript_exon_variant 0.25
rrl 1475129 n.1472G>T non_coding_transcript_exon_variant 0.25
rrl 1475144 n.1487G>C non_coding_transcript_exon_variant 0.33
rrl 1475154 n.1497C>A non_coding_transcript_exon_variant 0.44
rrl 1475163 n.1506T>G non_coding_transcript_exon_variant 0.33
rrl 1475175 n.1518G>A non_coding_transcript_exon_variant 0.43
rrl 1475202 n.1545G>C non_coding_transcript_exon_variant 0.29
rrl 1475209 n.1552G>A non_coding_transcript_exon_variant 0.29
rrl 1475213 n.1556C>T non_coding_transcript_exon_variant 0.33
rrl 1475220 n.1563G>T non_coding_transcript_exon_variant 0.33
rrl 1475673 n.2016T>C non_coding_transcript_exon_variant 0.3
rrl 1475687 n.2030C>T non_coding_transcript_exon_variant 0.47
rrl 1475688 n.2031G>C non_coding_transcript_exon_variant 0.47
rrl 1475696 n.2039T>C non_coding_transcript_exon_variant 0.43
rrl 1475699 n.2042C>T non_coding_transcript_exon_variant 0.43
rrl 1475703 n.2046A>G non_coding_transcript_exon_variant 0.39
rrl 1475707 n.2050T>A non_coding_transcript_exon_variant 0.36
rrl 1475713 n.2056C>G non_coding_transcript_exon_variant 0.48
rrl 1475716 n.2059A>G non_coding_transcript_exon_variant 0.48
rrl 1475751 n.2094C>G non_coding_transcript_exon_variant 0.17
rrl 1475760 n.2105_2106delGC non_coding_transcript_exon_variant 0.15
rrl 1475764 n.2107A>T non_coding_transcript_exon_variant 0.15
rrl 1475765 n.2108A>T non_coding_transcript_exon_variant 0.17
rrl 1475777 n.2120A>C non_coding_transcript_exon_variant 0.14
rrl 1475783 n.2126T>G non_coding_transcript_exon_variant 0.25
rrl 1475803 n.2146T>C non_coding_transcript_exon_variant 0.39
rrl 1475804 n.2147G>C non_coding_transcript_exon_variant 0.39
rrl 1475816 n.2159C>G non_coding_transcript_exon_variant 0.48
rrl 1475817 n.2160A>G non_coding_transcript_exon_variant 0.43
rrl 1475858 n.2201T>C non_coding_transcript_exon_variant 0.29
rrl 1475866 n.2209T>A non_coding_transcript_exon_variant 0.29
rrl 1475871 n.2214T>C non_coding_transcript_exon_variant 0.21
rrl 1476056 n.2399G>A non_coding_transcript_exon_variant 0.9
rrl 1476085 n.2428G>A non_coding_transcript_exon_variant 0.23
rrl 1476086 n.2429G>A non_coding_transcript_exon_variant 0.23
rrl 1476088 n.2431A>C non_coding_transcript_exon_variant 0.3
rrl 1476099 n.2442A>G non_coding_transcript_exon_variant 0.3
rrl 1476103 n.2446C>G non_coding_transcript_exon_variant 0.3
rrl 1476105 n.2448G>A non_coding_transcript_exon_variant 0.3
rrl 1476106 n.2449A>T non_coding_transcript_exon_variant 0.3
rrl 1476110 n.2453G>C non_coding_transcript_exon_variant 0.33
rrl 1476114 n.2457T>C non_coding_transcript_exon_variant 0.33
rrl 1476115 n.2458T>C non_coding_transcript_exon_variant 0.33
rrl 1476131 n.2474C>T non_coding_transcript_exon_variant 0.38
rrl 1476141 n.2484A>G non_coding_transcript_exon_variant 0.47
rrl 1476153 n.2496T>C non_coding_transcript_exon_variant 0.58
rrl 1476165 n.2508T>G non_coding_transcript_exon_variant 0.69
rrl 1476194 n.2537A>G non_coding_transcript_exon_variant 0.67
rrl 1476195 n.2538C>A non_coding_transcript_exon_variant 0.67
rrl 1476196 n.2539C>A non_coding_transcript_exon_variant 0.67
rrl 1476200 n.2543A>T non_coding_transcript_exon_variant 0.67
rrl 1476201 n.2544C>T non_coding_transcript_exon_variant 0.67
rrl 1476204 n.2547C>A non_coding_transcript_exon_variant 0.73
rrl 1476210 n.2553G>T non_coding_transcript_exon_variant 0.73
rrl 1476211 n.2554G>T non_coding_transcript_exon_variant 0.73
rrl 1476212 n.2555T>C non_coding_transcript_exon_variant 0.73
rrl 1476214 n.2557G>C non_coding_transcript_exon_variant 0.76
rrl 1476215 n.2558C>A non_coding_transcript_exon_variant 0.76
rrl 1476225 n.2568T>G non_coding_transcript_exon_variant 0.91
rrl 1476251 n.2594T>C non_coding_transcript_exon_variant 0.91
rrl 1476260 n.2603A>G non_coding_transcript_exon_variant 0.92
rrl 1476280 n.2623A>C non_coding_transcript_exon_variant 0.93
rrl 1476293 n.2636C>T non_coding_transcript_exon_variant 0.92
rrl 1476294 n.2637A>G non_coding_transcript_exon_variant 0.91
rrl 1476295 n.2638C>G non_coding_transcript_exon_variant 0.92
rrl 1476296 n.2639C>T non_coding_transcript_exon_variant 0.92
rrl 1476297 n.2640C>T non_coding_transcript_exon_variant 0.92
rrl 1476301 n.2644A>C non_coding_transcript_exon_variant 0.91
rrl 1476302 n.2645G>A non_coding_transcript_exon_variant 0.91
rrl 1476311 n.2654G>C non_coding_transcript_exon_variant 0.92
rrl 1476312 n.2655T>C non_coding_transcript_exon_variant 0.92
rrl 1476313 n.2656G>A non_coding_transcript_exon_variant 0.92
rrl 1476332 n.2675G>C non_coding_transcript_exon_variant 0.94
rrl 1476353 n.2696G>T non_coding_transcript_exon_variant 0.94
rrl 1476358 n.2701T>C non_coding_transcript_exon_variant 0.94
rrl 1476372 n.2715T>C non_coding_transcript_exon_variant 0.94
rrl 1476382 n.2725A>G non_coding_transcript_exon_variant 0.95
rrl 1476383 n.2726T>A non_coding_transcript_exon_variant 0.95
rrl 1476408 n.2751G>A non_coding_transcript_exon_variant 0.95
rrl 1476425 n.2768G>T non_coding_transcript_exon_variant 0.96
rrl 1476428 n.2771C>T non_coding_transcript_exon_variant 0.96
rrl 1476429 n.2772A>C non_coding_transcript_exon_variant 0.97
rrl 1476466 n.2809C>T non_coding_transcript_exon_variant 0.97
rrl 1476481 n.2824T>C non_coding_transcript_exon_variant 0.97
rrl 1476506 n.2849T>C non_coding_transcript_exon_variant 0.98
rrl 1476514 n.2857C>T non_coding_transcript_exon_variant 0.98
rrl 1476519 n.2862C>G non_coding_transcript_exon_variant 0.98
rrl 1476523 n.2866T>C non_coding_transcript_exon_variant 0.96
rrl 1476524 n.2867C>A non_coding_transcript_exon_variant 0.96
rrl 1476525 n.2868A>G non_coding_transcript_exon_variant 0.96
rrl 1476530 n.2873C>T non_coding_transcript_exon_variant 0.96
rrl 1476536 n.2879G>A non_coding_transcript_exon_variant 0.96
rrl 1476537 n.2880A>G non_coding_transcript_exon_variant 0.96
rrl 1476538 n.2881A>G non_coding_transcript_exon_variant 0.96
rrl 1476540 n.2883C>G non_coding_transcript_exon_variant 0.96
rrl 1476547 n.2890C>T non_coding_transcript_exon_variant 0.97
rrl 1476567 n.2910C>T non_coding_transcript_exon_variant 0.93
rrl 1476573 n.2916A>C non_coding_transcript_exon_variant 0.92
rrl 1476577 n.2920T>G non_coding_transcript_exon_variant 0.93
rrl 1476584 n.2927C>T non_coding_transcript_exon_variant 0.91
rrl 1476594 n.2937C>T non_coding_transcript_exon_variant 0.85
rrl 1476596 n.2939C>T non_coding_transcript_exon_variant 0.85
rrl 1476601 n.2944G>A non_coding_transcript_exon_variant 0.8
rrl 1476607 n.2950C>T non_coding_transcript_exon_variant 0.76
rrl 1476614 n.2957A>G non_coding_transcript_exon_variant 0.7
rrl 1476619 n.2962C>T non_coding_transcript_exon_variant 0.65
rrl 1476621 n.2964C>T non_coding_transcript_exon_variant 0.54
rrl 1476624 n.2967T>G non_coding_transcript_exon_variant 0.54
rrl 1476628 n.2971T>A non_coding_transcript_exon_variant 0.54
rrl 1476630 n.2973A>G non_coding_transcript_exon_variant 0.54
rrl 1476637 n.2980C>G non_coding_transcript_exon_variant 0.54
rrl 1476638 n.2981C>T non_coding_transcript_exon_variant 0.54
rrl 1476656 n.2999G>A non_coding_transcript_exon_variant 0.38
tlyA 1917972 c.33A>G synonymous_variant 1.0
tlyA 1918237 p.Leu100Met missense_variant 0.25
tlyA 1918729 p.Ile264Val missense_variant 0.17
tlyA 1918741 p.Pro268Thr missense_variant 0.17
ndh 2102347 c.696G>A synonymous_variant 0.4
katG 2155467 p.Asp215Glu missense_variant 0.2
katG 2155822 p.His97Arg missense_variant 0.25
katG 2155946 p.Asp56Tyr missense_variant 0.22
katG 2156264 c.-153C>A upstream_gene_variant 0.29
PPE35 2169024 p.Pro530Leu missense_variant 0.5
Rv1979c 2222018 p.Phe383Leu missense_variant 0.15
Rv1979c 2223051 p.Glu38Asp missense_variant 1.0
Rv1979c 2223293 c.-129A>G upstream_gene_variant 1.0
Rv1979c 2223301 c.-137C>G upstream_gene_variant 0.33
kasA 2518197 p.Asp28Ala missense_variant 0.25
kasA 2518200 p.Ile29Asn missense_variant 0.25
kasA 2518201 c.88delG frameshift_variant 0.25
kasA 2518218 p.Gly35Ala missense_variant 0.18
kasA 2518226 p.Ala38Ser missense_variant 0.18
kasA 2518511 p.Gly133Cys missense_variant 0.18
kasA 2518919 p.Gly269Ser missense_variant 1.0
eis 2714835 c.498C>A synonymous_variant 0.17
ahpC 2726292 p.Tyr34Asn missense_variant 0.18
ahpC 2726649 p.Ser153Thr missense_variant 0.22
folC 2746826 p.Arg258Leu missense_variant 0.33
Rv2752c 3065824 p.Pro123Leu missense_variant 1.0
thyA 3073868 p.Thr202Ala missense_variant 1.0
thyA 3074043 c.429G>T synonymous_variant 0.22
thyA 3074325 p.Lys49Asn missense_variant 0.29
ald 3086788 c.-32T>C upstream_gene_variant 1.0
ald 3087770 c.951G>T synonymous_variant 0.18
Rv3083 3448843 p.Cys114Ser missense_variant 0.25
Rv3083 3449106 c.603C>A synonymous_variant 0.2
Rv3083 3449949 c.1446G>T synonymous_variant 0.14
fprA 3473996 c.-11_-10insA upstream_gene_variant 1.0
fprA 3474111 c.105C>T synonymous_variant 0.22
Rv3236c 3612813 p.Thr102Ala missense_variant 0.67
fbiA 3640763 p.Asp74Val missense_variant 0.12
alr 3840263 c.1158C>T synonymous_variant 0.23
ddn 3987161 c.318G>T synonymous_variant 0.17
clpC1 4038287 c.2418C>T synonymous_variant 0.9
clpC1 4039487 c.1218G>C synonymous_variant 0.29
clpC1 4039493 c.1212C>T synonymous_variant 0.25
clpC1 4039508 c.1197G>A synonymous_variant 0.25
clpC1 4039522 c.1183C>T synonymous_variant 0.22
clpC1 4039528 c.1177C>A synonymous_variant 0.22
clpC1 4039541 c.1164C>G synonymous_variant 0.29
clpC1 4039556 c.1149G>C synonymous_variant 0.25
clpC1 4039559 c.1146C>G synonymous_variant 0.22
clpC1 4039562 c.1143C>G synonymous_variant 0.22
clpC1 4039565 c.1140G>C synonymous_variant 0.22
clpC1 4039570 p.Met379Leu missense_variant 0.22
clpC1 4039574 p.Ala377Gly missense_variant 0.2
clpC1 4039577 c.1128T>C synonymous_variant 0.22
clpC1 4039586 c.1119G>C synonymous_variant 0.22
clpC1 4039601 c.1104G>A synonymous_variant 0.15
clpC1 4039610 c.1095G>C synonymous_variant 0.21
clpC1 4039613 c.1092C>T synonymous_variant 0.21
clpC1 4039616 c.1089G>C synonymous_variant 0.21
clpC1 4039622 c.1083C>T synonymous_variant 0.21
clpC1 4039649 c.1056G>C synonymous_variant 0.2
clpC1 4039661 c.1044T>C synonymous_variant 0.23
clpC1 4039682 c.1023C>G synonymous_variant 0.23
clpC1 4039694 c.1011G>C synonymous_variant 0.27
clpC1 4039724 c.981A>G synonymous_variant 0.22
clpC1 4039733 c.972G>T synonymous_variant 0.22
clpC1 4039739 c.966C>G synonymous_variant 0.18
clpC1 4039742 c.963C>T synonymous_variant 0.18
clpC1 4039748 c.957G>C synonymous_variant 0.17
clpC1 4039751 c.954A>G synonymous_variant 0.17
clpC1 4039757 c.948A>G synonymous_variant 0.15
clpC1 4039760 c.945T>C synonymous_variant 0.14
clpC1 4039763 c.942C>T synonymous_variant 0.14
clpC1 4039769 c.936C>G synonymous_variant 0.14
clpC1 4039778 c.927A>G synonymous_variant 0.14
clpC1 4040012 c.692delA frameshift_variant 0.2
clpC1 4040087 c.618G>T synonymous_variant 0.22
clpC1 4040090 c.613_615delTCTinsAGC synonymous_variant 0.22
clpC1 4040093 c.612C>G synonymous_variant 0.18
clpC1 4040133 p.Ile191Thr missense_variant 0.15
clpC1 4040141 c.564C>T synonymous_variant 0.15
clpC1 4040144 c.561G>C synonymous_variant 0.15
clpC1 4040147 c.558A>G synonymous_variant 0.15
panD 4044462 c.-181T>C upstream_gene_variant 0.33
embC 4240004 p.Pro48Thr missense_variant 0.2
embC 4240204 c.342T>C synonymous_variant 0.12
embA 4242643 c.-590C>T upstream_gene_variant 1.0
embC 4242803 p.Val981Leu missense_variant 0.14
embB 4247587 c.1074G>A synonymous_variant 0.4
embB 4248513 p.Thr667Ile missense_variant 0.14
aftB 4267590 p.Gln416Leu missense_variant 0.4
ethA 4326284 p.Leu397Pro missense_variant 1.0
whiB6 4338595 c.-75delG upstream_gene_variant 1.0
gid 4407588 c.615A>G synonymous_variant 0.38
gid 4408156 p.Leu16Arg missense_variant 1.0