EBG00000313325 - n.1249T>A
Drug resistance types
163 Sensitive
17 RR-TB
18 HR-TB
26 MDR-TB
17 Pre-XDR-TB
0 XDR-TB
104 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage2.2 | 3 |
| lineage4.9 | 56 |
| lineage4.3.3 | 14 |
| lineage4.4.1.1 | 10 |
| lineage4.1.2.1 | 16 |
| lineage1 | 1 |
| lineage1.1.3.2 | 4 |
| lineage4.4 | 1 |
| lineage4.1.1 | 6 |
| 10 | |
| lineage4.1 | 2 |
| lineage4.3.4.2.1 | 14 |
| lineage2.2.1 | 44 |
| lineage4.3.2.1 | 13 |
| lineage2.2.2 | 1 |
| lineage3.1.1 | 8 |
| lineage4.7 | 2 |
| lineage4.3.4.2 | 4 |
| lineage4.8 | 9 |
| lineage4.1.2 | 9 |
| lineage4.5 | 2 |
| lineage2.2.1.1 | 5 |
| lineage4.1.2;lineage3.1 | 2 |
| lineage4.3.4.1 | 5 |
| lineage4.3 | 1 |
| lineage3 | 12 |
| La1.8.1 | 13 |
| lineage5.1.4 | 1 |
| lineage4.9;La1.8.1 | 1 |
| lineage3.1.2.2 | 1 |
| lineage5.1.1 | 3 |
| lineage4.2.1 | 1 |
| lineage4.6.2.2 | 4 |
| lineage6.1.1 | 2 |
| lineage4.9;La1.8 | 1 |
| La1.3 | 4 |
| lineage4.1.1.3 | 7 |
| lineage4.1.2.1.1 | 1 |
| lineage4.4.1.2 | 1 |
| lineage4.8.1 | 1 |
| lineage4.4.1.1.1 | 2 |
| La1.6 | 3 |
| lineage4.6.1 | 3 |
| lineage3.1.2.1 | 3 |
| lineage1.1.2 | 3 |
| lineage1.2.1.2.1 | 1 |
| lineage1.1.3 | 2 |
| lineage1.1.3.1 | 2 |
| lineage4.9;lineage4.4.2 | 1 |
| La1.7.1 | 5 |
| La1.2 | 1 |
| lineage4.9;lineage4.3.4.1 | 1 |
| La1.4 | 2 |
| lineage4.9.1 | 3 |
| lineage1.2.1.2 | 1 |
| lineage1.1.1 | 1 |
| lineage1.2.2.2 | 1 |
| lineage4.3.4 | 1 |
| lineage4 | 7 |
| lineage4.6.1.2 | 1 |
| lineage4.3.4.2.1;lineage1.2.2.2 | 1 |
| lineage4.2 | 1 |
| lineage4.3.2 | 1 |
| lineage4.8.2 | 1 |
| lineage1.1.1.1 | 1 |
| lineage4.1.1.2 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 345 |
Geographic prevalence
Country level data for this variant is available for 14 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR6982140 | Other | lineage2.2 | None | SRR6982139 | Sensitive | lineage4.9 | None | SRR6896255 | Sensitive | lineage4.3.3 | None | SRR6896340 | HR-TB | lineage4.4.1.1 | None | SRR6896348 | Sensitive | lineage4.1.2.1 | None | SRR6982198 | HR-TB | lineage1 | None | SRR6982175 | Other | lineage1.1.3.2 | None | SRR6982190 | Sensitive | lineage4.3.3 | None | SRR6982195 | RR-TB | lineage4.4 | None | SRR6982427 | Sensitive | lineage4.1.1 | None | SRR6982196 | Sensitive | None | SRR6982170 | Sensitive | lineage4.1 | None | SRR6982178 | Sensitive | lineage2.2 | None | SRR6982430 | Other | lineage4.3.4.2.1 | None | SRR6982229 | Sensitive | lineage2.2.1 | None | SRR6982213 | Sensitive | lineage4.3.2.1 | None | SRR6982227 | Other | lineage4.1.1 | None | SRR6982257 | RR-TB | lineage4.1.2.1 | None | SRR6982494 | Other | lineage2.2.2 | None | SRR6982275 | Other | lineage2.2.1 | None | SRR6982313 | Sensitive | lineage4.3.4.2.1 | None | SRR6982349 | Sensitive | lineage2.2.1 | None | SRR6982328 | HR-TB | lineage3.1.1 | None | SRR6982337 | Sensitive | lineage4.7 | None | SRR6982465 | Sensitive | lineage4.3.4.2 | None | SRR6982334 | Sensitive | lineage4.4.1.1 | None | SRR6981912 | Sensitive | None | SRR6855721 | Sensitive | lineage4.3.2.1 | None | SRR6982362 | Other | lineage4.3.2.1 | None | SRR6855718 | Sensitive | lineage4.8 | None | SRR6981922 | Sensitive | lineage4.3.2.1 | None | SRR6981962 | Sensitive | None | SRR6982363 | Sensitive | lineage4.3.3 | None | SRR6981941 | Sensitive | lineage4.3.4.2.1 | None | SRR6981939 | Sensitive | lineage4.3.4.2.1 | None | SRR6981966 | Other | lineage2.2.1 | None | SRR6982471 | Sensitive | lineage2.2.1 | None | SRR6981968 | Sensitive | lineage4.1.2 | None | SRR6981993 | Other | lineage4.3.2.1 | None | SRR6981981 | Other | lineage4.3.3 | None | SRR6981975 | Sensitive | lineage4.7 | None | SRR6824550 | Sensitive | lineage4.5 | None | SRR6824516 | Sensitive | lineage2.2.1.1 | None | SRR6981997 | Sensitive | lineage4.9 | None | SRR6982385 | Sensitive | lineage4.1.2 | None | SRR6982035 | Sensitive | lineage4.9 | None | SRR6982011 | Other | lineage4.1.1 | None | SRR6982022 | Sensitive | lineage4.4.1.1 | None | SRR6982389 | Other | lineage4.1.2;lineage3.1 | None | SRR6855915 | Sensitive | lineage4.9 | None | SRR6982026 | Sensitive | lineage4.3.3 | None | SRR6855963 | RR-TB | lineage2.2.1 | None | SRR6982037 | Sensitive | lineage4.1.1 | None | SRR6982398 | MDR-TB | lineage2.2 | None | SRR6982048 | HR-TB | lineage4.3.2.1 | None | SRR6982033 | Sensitive | lineage2.2.1 | None | SRR6982043 | Sensitive | lineage4.4.1.1 | None | SRR6982050 | Sensitive | lineage4.3.4.1 | None | SRR6982056 | Sensitive | lineage4.3.4.2.1 | None | SRR6982057 | Pre-XDR-TB | lineage4.3 | None | SRR6982405 | Sensitive | None | SRR6982058 | HR-TB | lineage2.2.1 | None | SRR6982075 | Sensitive | lineage3 | None | SRR6982484 | Sensitive | lineage3.1.1 | None | SRR6982070 | RR-TB | None | SRR6856032 | Sensitive | lineage2.2.1 | None | SRR6982076 | Sensitive | lineage4.9 | None | SRR6982077 | MDR-TB | lineage4.3.2.1 | None | ERR5087606 | Other | La1.8.1 | None | ERR502513 | Sensitive | lineage5.1.4 | gh | ERR5162118 | Other | La1.8.1 | None | SRR6982509 | Sensitive | lineage4.3.2.1 | None | ERR5162133 | Other | La1.8.1 | None | ERR5311080 | Other | La1.8.1 | None | ERR5087719 | Other | La1.8.1 | None | ERR5311086 | Sensitive | lineage4.9;La1.8.1 | None | ERR5311088 | Other | La1.8.1 | None | SRR6982514 | Sensitive | lineage4.3.3 | None | SRR8346061 | Pre-XDR-TB | lineage2.2.1 | None | SRR6982558 | Other | lineage4.3.4.2 | None | SRR7645834 | Other | lineage2.2.1 | None | SRR7645800 | MDR-TB | lineage2.2.1 | None | ERR323048 | Pre-XDR-TB | lineage4.9 | None | SRR9971168 | Other | lineage4.3.2.1 | None | SRR9971041 | MDR-TB | lineage4.3.3 | None | ERR072033 | Sensitive | lineage3.1.2.2 | None | ERR323068 | Sensitive | lineage4.9 | None | DRR184913 | Sensitive | lineage2.2.1 | None | ERR036242 | Sensitive | lineage4.3.4.2.1 | None | ERR1063847 | Sensitive | lineage3.1.1 | None | ERR1082134 | Sensitive | lineage5.1.1 | None | ERR1082121 | Sensitive | lineage4.9 | None | ERR10762317 | Pre-XDR-TB | lineage4.2.1 | None | ERR1203071 | Sensitive | lineage4.8 | None | ERR108424 | Sensitive | lineage4.8 | None | ERR3324325 | MDR-TB | lineage4.6.2.2 | None | ERR1203078 | Sensitive | lineage4.6.2.2 | None | ERR3799543 | Sensitive | lineage6.1.1 | None | ERR3335798 | MDR-TB | lineage2.2.1 | None | ERR3804154 | Sensitive | lineage4.1.2.1 | None | ERR4188222 | MDR-TB | La1.8.1 | None | ERR4178135 | Sensitive | lineage4.3.4.1 | None | ERR4188213 | HR-TB | La1.8.1 | None | ERR4178161 | Other | lineage4.4.1.1 | None | ERR4188010 | Other | La1.8.1 | None | ERR4769518 | Sensitive | lineage4.9 | None | ERR4188255 | Other | lineage4.9;La1.8 | None | ERR4627379 | Other | La1.8.1 | None | ERR473278 | Sensitive | lineage4.9 | None | ERR4769419 | Other | lineage4.9 | None | ERR4769462 | Other | La1.3 | None | ERR4769507 | Sensitive | lineage4.9 | None | ERR4188253 | Other | La1.8.1 | None | ERR4627392 | Other | La1.8.1 | None | ERR473298 | Sensitive | lineage4.6.2.2 | None | ERR473304 | Sensitive | lineage2.2.1 | None | ERR473341 | Sensitive | lineage4.1.1.3 | None | ERR4769479 | Other | La1.3 | None | ERR4769506 | Sensitive | La1.3 | None | ERR4769527 | Sensitive | lineage4.9 | None | ERR4769537 | Sensitive | lineage4.9 | None | ERR5865343 | MDR-TB | lineage2.2.1 | None | ERR4769561 | Other | La1.3 | None | ERR6197030 | Other | lineage4.9 | None | ERR6197022 | Other | lineage4.9 | None | ERR6197044 | RR-TB | lineage4.9 | None | ERR760877 | MDR-TB | lineage4.1.2.1.1 | None | ERR6865839 | Sensitive | lineage4.3.4.1 | None | ERR6865446 | Other | lineage4.4.1.1 | None | ERR702399 | Sensitive | lineage5.1.1 | gh | ERR736822 | Sensitive | lineage4.4.1.2 | None | ERR9786447 | Sensitive | lineage4.1.2.1 | None | ERR7821222 | Sensitive | lineage4.8.1 | None | ERR8025347 | Sensitive | lineage4.9 | None | ERR9117681 | Other | lineage4.3.3 | None | ERR779661 | Sensitive | lineage4.3.4.2.1 | None | ERR779662 | Sensitive | lineage3.1.1 | None | ERR7821131 | MDR-TB | lineage4.4.1.1.1 | None | ERR9786258 | Sensitive | lineage4.3.4.1 | None | ERR9786558 | Sensitive | lineage4.3.4.2 | None | ERR987719 | HR-TB | lineage3 | None | ERR9786663 | Sensitive | lineage4.3.4.2 | None | ERR9787099 | Sensitive | lineage6.1.1 | None | SRR1011488 | Other | lineage2.2.1 | None | SRR1011450 | Pre-XDR-TB | lineage2.2.1 | None | SRR1062859 | Sensitive | lineage2.2.1 | None | SRR1062820 | Pre-XDR-TB | lineage2.2.1 | None | SRR1169167 | Pre-XDR-TB | lineage4.1.1.3 | None | SRR10993951 | RR-TB | La1.6 | None | SRR11349211 | Pre-XDR-TB | lineage4.3.3 | None | SRR10993953 | Other | La1.6 | None | SRR10993957 | Other | La1.6 | None | SRR1169203 | Pre-XDR-TB | lineage4.1.1.3 | None | SRR1169301 | Pre-XDR-TB | lineage4.1.1.3 | None | SRR1173361 | MDR-TB | lineage4.6.1 | None | SRR1172306 | Pre-XDR-TB | lineage4.1.1.3 | None | SRR1172808 | Other | lineage4.9 | None | SRR1173025 | Other | lineage4.9 | None | SRR1172751 | HR-TB | lineage3.1.2.1 | None | SRR1173190 | Sensitive | lineage4.9 | None | SRR1173720 | Other | lineage4.9 | None | SRR1173717 | MDR-TB | lineage4.6.1 | None | SRR1173416 | Other | lineage4.9 | None | SRR1175173 | HR-TB | lineage3.1.2.1 | None | SRR1183080 | RR-TB | lineage4.9 | None | SRR1180237 | Sensitive | lineage4.1.2 | None | SRR1180252 | Other | lineage4.9 | None | SRR1181085 | Sensitive | lineage4.1.2 | None | SRR1181250 | Other | lineage4.9 | None | SRR1182994 | Sensitive | lineage4.1.2 | None | SRR1181161 | Other | lineage4.9 | None | SRR1181242 | Sensitive | lineage4.1.2 | None | SRR11972188 | MDR-TB | lineage2.2.1 | None | SRR1184383 | Other | lineage4.9 | None | SRR11871419 | Pre-XDR-TB | lineage2.2.1 | None | SRR1196582 | Other | lineage4.9 | None | SRR11972390 | MDR-TB | lineage2.2.1 | None | SRR11972212 | MDR-TB | lineage2.2.1.1 | None | SRR11972378 | MDR-TB | lineage1.1.2 | None | SRR11972274 | RR-TB | lineage1.2.1.2.1 | None | SRR11972283 | MDR-TB | lineage2.2.1 | None | SRR12199410 | Sensitive | lineage1.1.3 | None | SRR11972420 | MDR-TB | lineage2.2.1 | None | SRR12882699 | Sensitive | lineage1.1.2 | None | SRR12199461 | Sensitive | lineage1.1.3.1 | None | SRR12199468 | Sensitive | lineage4.9;lineage4.4.2 | None | SRR13199738 | Other | La1.7.1 | None | SRR13199734 | Other | La1.2 | None | SRR14782537 | Pre-XDR-TB | lineage2.2.1 | None | SRR13591410 | Other | lineage4.9;lineage4.3.4.1 | None | SRR14782096 | MDR-TB | lineage2.2.1 | None | SRR13861519 | Other | lineage4.9 | None | SRR13861534 | Other | lineage4.9 | None | SRR14801294 | MDR-TB | lineage2.2.1 | None | SRR16278292 | Other | La1.4 | None | SRR16278273 | Other | La1.4 | None | SRR1792232 | Other | La1.7.1 | None | SRR17856664 | Sensitive | lineage3 | None | SRR1792265 | Other | La1.8.1 | None | SRR1792247 | Other | La1.7.1 | None | SRR2101505 | MDR-TB | lineage4.9.1 | None | SRR18003031 | HR-TB | lineage2.2.1 | None | SRR18391683 | Other | La1.7.1 | None | SRR18391772 | Other | La1.7.1 | None | SRR20969475 | Other | lineage1.2.1.2 | None | SRR2101595 | RR-TB | lineage4.3.4.2.1 | None | SRR2101617 | Other | lineage4.1.1 | None | SRR2101637 | RR-TB | lineage4.4.1.1 | None | SRR2101636 | Other | lineage4.3.2.1 | None | SRR2101625 | Other | lineage4.1.2;lineage3.1 | None | SRR2101643 | Other | lineage2.2.1 | None | SRR2101647 | Sensitive | lineage4.9 | None | SRR2101663 | Other | lineage1.1.3.2 | None | SRR2101651 | Sensitive | lineage4.3.2.1 | None | SRR2101661 | Sensitive | lineage4.1 | None | SRR2101685 | Sensitive | lineage4.9 | None | SRR2101684 | Other | lineage2.2.1.1 | None | SRR2101666 | Sensitive | lineage4.8 | None | SRR2101681 | Sensitive | lineage4.8 | None | SRR2101786 | Sensitive | lineage4.4.1.1 | None | SRR2101693 | Sensitive | lineage4.1.2 | None | SRR2101691 | Other | lineage2.2.1 | None | SRR2101802 | Sensitive | lineage4.4.1.1 | None | SRR2101827 | Sensitive | lineage4.3.4.2.1 | None | SRR2101803 | Sensitive | lineage4.3.3 | None | SRR21240029 | Sensitive | lineage4.3.3 | None | SRR21658550 | Other | lineage1.1.1 | None | SRR21240055 | Other | lineage4.1.2.1 | None | SRR21737226 | Sensitive | lineage4.5 | None | SRR21711124 | Other | lineage1.1.3 | None | SRR21714045 | HR-TB | lineage2.2.1 | None | SRR21675637 | Sensitive | lineage4.3.3 | None | SRR21685367 | MDR-TB | lineage2.2.1 | None | SRR21728339 | Other | lineage3 | None | ERR176771 | Sensitive | None | SRR21764246 | Other | lineage4.9 | None | SRR22175227 | Pre-XDR-TB | lineage3 | None | SRR22424851 | MDR-TB | lineage4.3.3 | None | ERR176780 | Sensitive | lineage4.9 | None | ERR176820 | Sensitive | lineage4.3.4.2.1 | mw | ERR181940 | Sensitive | lineage3.1.1 | None | SRR3105736 | Other | lineage1.2.2.2 | None | ERR161033 | HR-TB | None | ERR161014 | Sensitive | lineage4.3.4.2.1 | None | ERR161125 | Sensitive | lineage4.3.4 | None | ERR161173 | Sensitive | lineage4.3.4.2.1 | None | ERR2179857 | RR-TB | lineage4 | None | ERR163970 | Sensitive | lineage4.6.1.2 | None | ERR181749 | Sensitive | lineage4.3.4.2.1 | None | ERR176450 | Sensitive | lineage4.1.1 | None | SRR3675245 | Other | lineage4.1.2.1 | None | ERR161201 | Sensitive | lineage1.1.3.2 | None | ERR163988 | Sensitive | lineage4.1.2 | None | SAMN02567676 | MDR-TB | lineage4.6.1 | None | ERR164021 | MDR-TB | lineage4.3.4.2.1;lineage1.2.2.2 | mw | ERR211997 | Sensitive | lineage3.1.1 | mw | ERR181905 | Sensitive | lineage2.2.1 | mw | ERR2229033 | Other | lineage4.8 | None | ERR4816101 | Other | lineage4.1.2.1 | None | SAMN02599156 | HR-TB | lineage3.1.2.1 | None | ERR212082 | Sensitive | lineage4.9.1 | None | ERR4817102 | Sensitive | None | ERR212042 | HR-TB | lineage3.1.1 | None | ERR2228859 | RR-TB | lineage4 | None | ERR216930 | Sensitive | lineage4.3.4.1 | None | SRR4034393 | MDR-TB | lineage4.1.2.1 | None | ERR216949 | Sensitive | lineage4 | None | ERR216950 | Other | lineage1.1.3.2 | None | ERR4816571 | Other | lineage1.1.2 | None | ERR2179737 | HR-TB | lineage4.2 | None | ERR4818831 | Other | lineage3 | None | ERR2179816 | Sensitive | lineage4 | None | ERR245764 | HR-TB | lineage3.1.1 | None | ERR4818272 | Other | lineage4.3.2 | None | ERR245810 | Sensitive | lineage4.9.1 | None | ERR2512660 | Sensitive | lineage3 | gb | ERR2513476 | Sensitive | lineage4.1.2.1 | gb | ERR2513273 | Other | lineage4.1.2.1 | None | SRR5007155 | HR-TB | lineage4.1.2.1 | None | ERR4819125 | Other | lineage2.2.1 | gb | ERR4819383 | RR-TB | lineage4.9 | None | ERR4819140 | Other | lineage4.1.2.1 | None | ERR4819175 | Other | lineage4.1.1.3 | gb | SRR5341460 | Other | lineage3 | None | ERR2515460 | Sensitive | lineage4.8 | za | SAMN02350446 | Sensitive | lineage2.2.1 | None | SRR5341288 | Pre-XDR-TB | lineage3 | None | ERR2515721 | Sensitive | lineage4.3.2.1 | None | ERR2515854 | Sensitive | lineage2.2.1 | None | SRR5341430 | Other | lineage3 | None | ERR2514576 | Other | lineage4.8 | gb | ERR4820030 | Other | lineage4.9 | None | ERR4820193 | Other | lineage3 | None | ERR2515148 | Sensitive | lineage4.3.3 | None | SAMN02350409 | Pre-XDR-TB | lineage2.2.1 | None | SAMN02585942 | Sensitive | lineage4.1.2 | None | ERR2652981 | Sensitive | lineage4.1.2.1 | None | ERR4821057 | HR-TB | lineage4 | None | ERR2660499 | Sensitive | lineage4.1.1.3 | None | ERR4821272 | RR-TB | lineage4.1.2.1 | None | ERR4821172 | RR-TB | lineage4.9 | None | ERR2660536 | Sensitive | lineage2.2.1 | None | ERR4821616 | Other | lineage1.1.3.1 | None | ERR4822138 | Other | lineage4.1.2.1 | None | ERR4821725 | Other | lineage4.8.2 | gb | SRR6044837 | Pre-XDR-TB | lineage2.2.1.1 | gb | SRR6045726 | Other | lineage3 | None | SRR6045124 | Other | lineage4.9 | None | SRR6045205 | Sensitive | lineage4.9 | None | SRR6397389 | Sensitive | lineage4.1.2.1 | None | SRR6046250 | Other | lineage4.9 | None | ERR2851371 | Other | lineage4.9 | None | ERR4828391 | Sensitive | lineage4.9 | None | ERR279477 | Sensitive | lineage4.4.1.1.1 | None | SRR6397642 | RR-TB | None | SRR6397441 | Other | lineage4 | None | ERR502472 | Other | lineage4.6.2.2 | None | SRR6397771 | Other | lineage1.1.1.1 | None | SRR6982078 | Sensitive | None | ERR502480 | Other | lineage5.1.1 | None | ERR502483 | Sensitive | lineage4.9 | None | ERR502482 | Sensitive | lineage4.9 | None | ERR502484 | Sensitive | lineage4.9 | None | ERR502490 | Sensitive | lineage4.9 | None | ERR502486 | Sensitive | lineage4.9 | None | ERR502489 | Sensitive | lineage4.9 | None | ERR502485 | Sensitive | lineage4.9 | None | ERR502492 | Sensitive | lineage4.9 | None | ERR502498 | Sensitive | lineage4.9 | None | ERR502493 | Sensitive | lineage4.9 | None | SRR6982090 | RR-TB | lineage4.4.1.1 | None | ERR502497 | Sensitive | lineage4.9 | None | SRR6856094 | Other | lineage2.2.1 | None | SRR6982088 | Other | lineage4.1.1.2 | None | SRR6982092 | Other | lineage4.3.2.1 | None | SRR6856087 | Sensitive | lineage4 | None | SRR6856119 | Sensitive | lineage2.2.1 | None | SRR6982099 | Sensitive | lineage4.3.4.2.1 | None | SRR6982104 | Sensitive | lineage2.2.1 | None | SRR6982102 | Other | lineage2.2.1 | None | SRR6896178 | Sensitive | lineage2.2.1 | None | SRR6896162 | Sensitive | lineage4.9 | None | SRR6982105 | Sensitive | lineage2.2.1.1 | None | SRR6982106 | Sensitive | lineage4.8 | None | SRR6982414 | Sensitive | lineage4.9 | None |
|---|
