EBG00000313325 - n.1286G>T
Drug resistance types
100 Sensitive
9 RR-TB
10 HR-TB
14 MDR-TB
3 Pre-XDR-TB
0 XDR-TB
74 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage4.9 | 37 |
| lineage4 | 4 |
| lineage4.3.3 | 12 |
| lineage3.1.2 | 2 |
| La1.8.1 | 9 |
| lineage2.2.1 | 34 |
| lineage4.6.1.1 | 1 |
| La1.6 | 1 |
| lineage1.2.1.2.1 | 1 |
| lineage2.2.1.1 | 2 |
| La1.7.1 | 3 |
| La1.2 | 1 |
| lineage3 | 6 |
| lineage4.9.1 | 1 |
| lineage4.5 | 1 |
| lineage4.3.2.1 | 13 |
| lineage4.3.4.2.1 | 10 |
| lineage4.1.1 | 6 |
| lineage4.4.1.1 | 9 |
| lineage4.1.2;lineage3.1 | 2 |
| lineage4.3.4.1 | 2 |
| lineage1.1.3.2 | 4 |
| lineage4.8 | 11 |
| lineage4.1.2 | 4 |
| lineage1.1.3 | 1 |
| lineage1.2.2.2 | 1 |
| lineage4.6.4 | 1 |
| lineage4.1.2.1 | 4 |
| lineage4.4.1.1.1 | 2 |
| lineage4.1 | 2 |
| lineage4.1.1.3 | 1 |
| lineage4;lineage3 | 1 |
| 3 | |
| lineage4.6.2.2 | 2 |
| lineage4.1.1.2 | 1 |
| lineage2.2 | 2 |
| lineage4.4 | 1 |
| lineage1 | 1 |
| lineage2.2.2 | 1 |
| lineage4;lineage2.2.1 | 1 |
| lineage3.1.1 | 2 |
| lineage4.7 | 2 |
| lineage4.3 | 1 |
| lineage4.3.4.2 | 1 |
| lineage4.1.4 | 1 |
| La1.3 | 1 |
| lineage4.9;La1.8 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 210 |
Geographic prevalence
Country level data for this variant is available for 3 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR1172808 | Other | lineage4.9 | None | ERR9030464 | Sensitive | lineage4 | None | ERR9117681 | Other | lineage4.3.3 | None | ERR9117714 | Other | lineage3.1.2 | None | SRR10482944 | Other | La1.8.1 | None | SRR1162501 | Other | lineage2.2.1 | None | ERR8025347 | Sensitive | lineage4.9 | None | ERR987733 | RR-TB | lineage4.6.1.1 | None | SRR10993953 | Other | La1.6 | None | SRR1181161 | Other | lineage4.9 | None | SRR1173025 | Other | lineage4.9 | None | SRR1180252 | Other | lineage4.9 | None | SRR1180982 | Other | lineage2.2.1 | None | SRR1183958 | Other | lineage2.2.1 | None | SRR1181250 | Other | lineage4.9 | None | SRR1183080 | RR-TB | lineage4.9 | None | SRR1196582 | Other | lineage4.9 | None | SRR1184383 | Other | lineage4.9 | None | SRR11972274 | RR-TB | lineage1.2.1.2.1 | None | SRR11972420 | MDR-TB | lineage2.2.1 | None | SRR11972394 | Pre-XDR-TB | lineage2.2.1.1 | None | SRR13199746 | Other | La1.7.1 | None | SRR13199734 | Other | La1.2 | None | SRR17856664 | Sensitive | lineage3 | None | SRR13861727 | Other | lineage4.9 | None | SRR13861519 | Other | lineage4.9 | None | SRR18391683 | Other | La1.7.1 | None | SRR1791899 | HR-TB | La1.8.1 | None | SRR2101505 | MDR-TB | lineage4.9.1 | None | SRR18911000 | Sensitive | lineage2.2.1 | None | SRR19612366 | Other | lineage4.5 | None | SRR18391772 | Other | La1.7.1 | None | SRR2101312 | MDR-TB | lineage2.2.1 | None | SRR2101540 | Sensitive | lineage4.3.2.1 | None | SRR2101595 | RR-TB | lineage4.3.4.2.1 | None | SRR2101617 | Other | lineage4.1.1 | None | SRR2101637 | RR-TB | lineage4.4.1.1 | None | SRR2101625 | Other | lineage4.1.2;lineage3.1 | None | SRR2101689 | Other | lineage4.3.4.1 | None | SRR2101663 | Other | lineage1.1.3.2 | None | SRR2101685 | Sensitive | lineage4.9 | None | SRR2101643 | Other | lineage2.2.1 | None | SRR2101666 | Sensitive | lineage4.8 | None | SRR2101681 | Sensitive | lineage4.8 | None | SRR2101684 | Other | lineage2.2.1.1 | None | SRR2101691 | Other | lineage2.2.1 | None | SRR2101786 | Sensitive | lineage4.4.1.1 | None | SRR2101693 | Sensitive | lineage4.1.2 | None | SRR2101711 | Sensitive | lineage2.2.1 | None | SRR2101774 | Sensitive | lineage2.2.1 | None | SRR2101773 | Sensitive | lineage4.3.4.2.1 | None | SRR2101816 | Other | lineage4.8 | None | SRR2101802 | Sensitive | lineage4.4.1.1 | None | SRR2101803 | Sensitive | lineage4.3.3 | None | SRR21714038 | Sensitive | lineage4.3.3 | None | SRR21675637 | Sensitive | lineage4.3.3 | None | SRR21685367 | MDR-TB | lineage2.2.1 | None | SRR2101827 | Sensitive | lineage4.3.4.2.1 | None | SRR21676318 | Sensitive | lineage2.2.1 | None | SRR21711124 | Other | lineage1.1.3 | None | SRR21764246 | Other | lineage4.9 | None | SRR21714045 | HR-TB | lineage2.2.1 | None | SRR21728339 | Other | lineage3 | None | SRR22424851 | MDR-TB | lineage4.3.3 | None | SRR3105736 | Other | lineage1.2.2.2 | None | ERR2515484 | Other | lineage4.8 | None | ERR2229425 | Sensitive | lineage4 | None | ERR1679641 | Other | lineage4.6.4 | None | ERR2179857 | RR-TB | lineage4 | None | ERR2229358 | Other | lineage4.8 | None | SRR5007155 | HR-TB | lineage4.1.2.1 | None | SRR5341417 | Pre-XDR-TB | lineage3 | None | ERR2515721 | Sensitive | lineage4.3.2.1 | None | SRR2101659 | Other | lineage4.4.1.1.1 | None | SRR2101636 | Other | lineage4.3.2.1 | None | ERR2515854 | Sensitive | lineage2.2.1 | None | SRR2101661 | Sensitive | lineage4.1 | None | SRR2101709 | Sensitive | lineage4.1.1.3 | None | ERR502482 | Sensitive | lineage4.9 | None | ERR2515148 | Sensitive | lineage4.3.3 | None | SRR6045683 | Other | lineage3.1.2 | None | SRR6045036 | Other | lineage4;lineage3 | None | SRR6982078 | Sensitive | None | ERR502472 | Other | lineage4.6.2.2 | None | ERR2660524 | HR-TB | lineage1.1.3.2 | None | SRR6045205 | Sensitive | lineage4.9 | None | ERR2851371 | Other | lineage4.9 | None | SRR6046607 | Other | lineage3 | None | ERR502486 | Sensitive | lineage4.9 | None | ERR502483 | Sensitive | lineage4.9 | None | ERR502484 | Sensitive | lineage4.9 | None | ERR502485 | Sensitive | lineage4.9 | None | ERR502493 | Sensitive | lineage4.9 | None | ERR502489 | Sensitive | lineage4.9 | None | ERR502490 | Sensitive | lineage4.9 | None | ERR502492 | Sensitive | lineage4.9 | None | ERR502498 | Sensitive | lineage4.9 | None | SRR6856087 | Sensitive | lineage4 | None | ERR502497 | Sensitive | lineage4.9 | None | SRR6982090 | RR-TB | lineage4.4.1.1 | None | SRR6856094 | Other | lineage2.2.1 | None | SRR6982088 | Other | lineage4.1.1.2 | None | SRR6856119 | Sensitive | lineage2.2.1 | None | SRR6982092 | Other | lineage4.3.2.1 | None | SRR6982102 | Other | lineage2.2.1 | None | SRR6982104 | Sensitive | lineage2.2.1 | None | SRR6982148 | Sensitive | lineage2.2.1 | None | SRR6982139 | Sensitive | lineage4.9 | None | SRR6896255 | Sensitive | lineage4.3.3 | None | SRR6896162 | Sensitive | lineage4.9 | None | SRR6982106 | Sensitive | lineage4.8 | None | SRR6896178 | Sensitive | lineage2.2.1 | None | SRR6982414 | Sensitive | lineage4.9 | None | SRR6982140 | Other | lineage2.2 | None | SRR6896339 | MDR-TB | lineage2.2.1 | None | SRR6896340 | HR-TB | lineage4.4.1.1 | None | SRR6982419 | Other | lineage4.8 | None | SRR6896348 | Sensitive | lineage4.1.2.1 | None | SRR6982170 | Sensitive | lineage4.1 | None | SRR6982175 | Other | lineage1.1.3.2 | None | SRR6982430 | Other | lineage4.3.4.2.1 | None | SRR6982195 | RR-TB | lineage4.4 | None | SRR6982190 | Sensitive | lineage4.3.3 | None | SRR6982227 | Other | lineage4.1.1 | None | SRR6982427 | Sensitive | lineage4.1.1 | None | SRR6982198 | HR-TB | lineage1 | None | SRR6982196 | Sensitive | None | SRR6982229 | Sensitive | lineage2.2.1 | None | SRR6982494 | Other | lineage2.2.2 | None | SRR6982275 | Other | lineage2.2.1 | None | SRR6982448 | Sensitive | lineage4;lineage2.2.1 | None | SRR6982292 | Other | lineage4.4.1.1.1 | None | SRR6982313 | Sensitive | lineage4.3.4.2.1 | None | SRR6982328 | HR-TB | lineage3.1.1 | None | SRR6982337 | Sensitive | lineage4.7 | None | SRR6982334 | Sensitive | lineage4.4.1.1 | None | SRR6982332 | Sensitive | lineage4.4.1.1 | None | SRR6981922 | Sensitive | lineage4.3.2.1 | None | SRR6855718 | Sensitive | lineage4.8 | None | SRR6855721 | Sensitive | lineage4.3.2.1 | None | SRR6981948 | Sensitive | lineage4.3.2.1 | None | SRR6982363 | Sensitive | lineage4.3.3 | None | SRR6981939 | Sensitive | lineage4.3.4.2.1 | None | SRR6982362 | Other | lineage4.3.2.1 | None | SRR6981968 | Sensitive | lineage4.1.2 | None | SRR6982371 | Sensitive | lineage4.1.1 | None | SRR6981975 | Sensitive | lineage4.7 | None | SRR6981966 | Other | lineage2.2.1 | None | SRR6981977 | Sensitive | lineage2.2.1 | None | SRR6981981 | Other | lineage4.3.3 | None | SRR6981978 | Sensitive | lineage4.3.4.2.1 | None | SRR6855851 | Sensitive | lineage4.3.4.2.1 | None | SRR6981993 | Other | lineage4.3.2.1 | None | SRR6855917 | Other | lineage4.8 | None | SRR6982011 | Other | lineage4.1.1 | None | SRR6982389 | Other | lineage4.1.2;lineage3.1 | None | SRR6982385 | Sensitive | lineage4.1.2 | None | SRR6982022 | Sensitive | lineage4.4.1.1 | None | SRR6855915 | Sensitive | lineage4.9 | None | SRR6982035 | Sensitive | lineage4.9 | None | SRR6982026 | Sensitive | lineage4.3.3 | None | SRR6982394 | Sensitive | lineage4.3.2.1 | None | SRR6824624 | Sensitive | lineage2.2.1 | None | SRR6982033 | Sensitive | lineage2.2.1 | None | SRR6982037 | Sensitive | lineage4.1.1 | None | SRR6855963 | RR-TB | lineage2.2.1 | None | SRR6982043 | Sensitive | lineage4.4.1.1 | None | SRR6982398 | MDR-TB | lineage2.2 | None | SRR6982048 | HR-TB | lineage4.3.2.1 | None | SRR6855967 | Sensitive | lineage4.1.2 | None | SRR6856032 | Sensitive | lineage2.2.1 | None | SRR6982057 | Pre-XDR-TB | lineage4.3 | None | SRR6982056 | Sensitive | lineage4.3.4.2.1 | None | SRR6982058 | HR-TB | lineage2.2.1 | None | SRR6982405 | Sensitive | None | SRR6982076 | Sensitive | lineage4.9 | None | SRR6982050 | Sensitive | lineage4.3.4.1 | None | SRR6982484 | Sensitive | lineage3.1.1 | None | SRR6982075 | Sensitive | lineage3 | None | ERR5162118 | Other | La1.8.1 | None | SRR6982077 | MDR-TB | lineage4.3.2.1 | None | ERR5162133 | Other | La1.8.1 | None | ERR1034722 | Other | lineage4.9 | None | SRR6982509 | Sensitive | lineage4.3.2.1 | None | SRR6982558 | Other | lineage4.3.4.2 | None | ERR5311080 | Other | La1.8.1 | None | SRR6982514 | Sensitive | lineage4.3.3 | None | ERR3324373 | MDR-TB | lineage2.2.1 | None | ERR3324328 | MDR-TB | lineage2.2.1 | None | ERR3324351 | MDR-TB | lineage4.1.4 | None | ERR3324362 | HR-TB | lineage4.1.2.1 | None | ERR3324325 | MDR-TB | lineage4.6.2.2 | None | ERR3324347 | Sensitive | lineage4.1.2.1 | None | ERR3324354 | Sensitive | lineage4.8 | None | ERR4769506 | Sensitive | La1.3 | None | ERR3324375 | Other | lineage1.1.3.2 | None | ERR4188010 | Other | La1.8.1 | None | ERR4188255 | Other | lineage4.9;La1.8 | None | ERR4769419 | Other | lineage4.9 | None | ERR3335798 | MDR-TB | lineage2.2.1 | None | ERR4188253 | Other | La1.8.1 | None | ERR4627379 | Other | La1.8.1 | None | ERR4627392 | Other | La1.8.1 | None | ERR2515916 | Sensitive | lineage4.3.4.2.1 | za | ERR4769507 | Sensitive | lineage4.9 | None | ERR4769518 | Sensitive | lineage4.9 | None | ERR4769527 | Sensitive | lineage4.9 | None | ERR2513894 | Sensitive | lineage3 | gb | ERR2515460 | Sensitive | lineage4.8 | za | ERR5865343 | MDR-TB | lineage2.2.1 | None |
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