ERR4769550
|
Sensitive
|
La1;lineage4.9
|
None
|
ERR4811101
|
Other
|
lineage4.4.2
|
None
|
ERR502489
|
Sensitive
|
lineage4.9
|
None
|
ERR978694
|
Other
|
lineage4.8
|
None
|
SRR18002956
|
Other
|
lineage2.2.1
|
None
|
SRR18003045
|
Other
|
lineage2.2.1
|
None
|
SRR19303907
|
Other
|
lineage4.8
|
None
|
SRR7070195
|
Sensitive
|
lineage3.1.2.1
|
None
|
SRR9971270
|
RR-TB
|
lineage2.2.1
|
None
|
ERR10796599
|
Other
|
lineage4.8
|
None
|
ERR10796597
|
Other
|
lineage4.3.3
|
None
|
SRR1180312
|
Sensitive
|
lineage4.9
|
None
|
SRR16156804
|
Sensitive
|
lineage4.9
|
None
|
SRR1049726
|
Other
|
lineage4.1.2.1;lineage4.4.1.1
|
None
|
SRR11342648
|
MDR-TB
|
lineage4.1.1.3
|
None
|
SRR11342693
|
MDR-TB
|
lineage4.8.1
|
None
|
SRR11349145
|
Pre-XDR-TB
|
lineage4.4.1.1.1
|
None
|
SRR11462861
|
Other
|
La1.8.1
|
None
|
ERR4769530
|
RR-TB
|
lineage4.9
|
None
|
SRR22424778
|
RR-TB
|
lineage2.2.1.1
|
None
|
SRR6046343
|
Other
|
lineage2.2.1
|
None
|
SRR7131233
|
MDR-TB
|
lineage4.3.3
|
None
|
SRR7131287
|
Other
|
lineage2.2.1.1
|
None
|
ERR10796627
|
Other
|
lineage4.1.2.1;lineage4.9
|
None
|
SRR6046141
|
Other
|
lineage4.9
|
None
|
SRR1049725
|
Other
|
lineage4.1.2.1;lineage4.4.1
|
None
|
ERR502486
|
Sensitive
|
lineage4.9
|
None
|
SRR7069314
|
Other
|
lineage3
|
None
|
SRR12062493
|
Pre-XDR-TB
|
lineage4.4.2
|
None
|
ERR1140792
|
HR-TB
|
lineage5.1
|
None
|
SRR6982213
|
Sensitive
|
lineage4.3.2.1
|
None
|
SRR6045832
|
Other
|
lineage4.9
|
None
|
SRR18213736
|
Other
|
lineage3
|
None
|
ERR4596944
|
MDR-TB
|
lineage3.1.1
|
None
|
ERR4796577
|
HR-TB
|
|
None
|
ERR978751
|
Other
|
lineage4.8
|
None
|
SRR11972300
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR502472
|
Sensitive
|
lineage4.6.2.2
|
None
|
SRR6982385
|
Sensitive
|
lineage4.1.2
|
None
|
SRR1049560
|
MDR-TB
|
lineage4.3.4.2.1
|
None
|
ERR502483
|
Sensitive
|
lineage4.9
|
None
|
SRR1180406
|
Sensitive
|
lineage4.9
|
None
|
SRR5007204
|
Other
|
lineage4.1.2.1
|
None
|
SRR6045359
|
Sensitive
|
lineage4.9
|
None
|
ERR502492
|
Sensitive
|
lineage4.9
|
None
|
SRR1175052
|
HR-TB
|
lineage4.9
|
None
|
ERR4769439
|
HR-TB
|
lineage4.9
|
None
|
SRR3105736
|
Sensitive
|
lineage1.2.2.2
|
None
|
ERR978755
|
RR-TB
|
lineage4.8
|
None
|
SRR12708414
|
HR-TB
|
lineage2.2.1
|
None
|
ERR10796562
|
Other
|
lineage4.3.4.1
|
None
|
ERR11080837
|
Pre-XDR-TB
|
lineage4.8
|
None
|
ERR2228910
|
Other
|
lineage4.8
|
None
|
SRR15315797
|
RR-TB
|
lineage2.2.1
|
None
|
ERR911929_ERR911930
|
Other
|
lineage4.8
|
None
|
SRR7443741
|
Sensitive
|
lineage4.9
|
None
|
ERR2027209
|
MDR-TB
|
lineage1.2.1.1
|
None
|
ERR10796565
|
Other
|
lineage4.9
|
None
|
SRR18003004
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
ERR867527
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR7070223
|
HR-TB
|
lineage3
|
None
|
SRR18002891
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR11342658
|
RR-TB
|
lineage4.1.2
|
None
|
SRR9971041
|
MDR-TB
|
lineage4.3.3
|
None
|
SRR1172807
|
Sensitive
|
lineage4.9
|
None
|
ERR2515230
|
Sensitive
|
lineage4.8
|
None
|
SRR6046440
|
Other
|
lineage3.1.2.2
|
None
|
ERR502481
|
RR-TB
|
lineage4.9
|
None
|
SRR7131236
|
Other
|
lineage4.3.4.2
|
None
|
SRR3675265
|
Other
|
lineage4
|
None
|
SRR6982328
|
Sensitive
|
lineage3.1.1
|
None
|
SRR3675565
|
Other
|
lineage4
|
None
|
SRR13180204
|
Other
|
lineage3
|
None
|
ERR10796594
|
Other
|
lineage4.9
|
None
|
ERR10796640
|
Other
|
lineage4.1.2.1
|
None
|
SRR18002933
|
Other
|
lineage2.2.1
|
None
|
ERR10796564
|
Other
|
lineage4.3.3
|
None
|
ERR978726
|
RR-TB
|
lineage4.8
|
None
|
SRR5007167
|
RR-TB
|
lineage4.1.1.3.1
|
None
|
SRR7755655
|
Other
|
lineage4.1.2.1
|
None
|
SRR6045843
|
Other
|
lineage4.2.2.2
|
None
|
SRR6046616
|
Other
|
lineage4.3.1.1
|
None
|
SRR6982239
|
Sensitive
|
lineage4.1.1.3
|
None
|
SRR6046210
|
Other
|
lineage4.9
|
None
|
SRR5153091
|
HR-TB
|
lineage4.3.3
|
None
|
SRR7131229
|
Other
|
lineage4.1.2.1
|
None
|
SRR6045664
|
Other
|
lineage4.2.1
|
None
|
ERR560442
|
Sensitive
|
La1.2.BCG;lineage4.9
|
None
|
SRR7069800
|
Other
|
lineage3.1.2.1
|
None
|
SRR18002876
|
MDR-TB
|
lineage2.2.1;lineage2.2.2
|
None
|
SRR7131123
|
Other
|
lineage4.8
|
None
|
ERR4821172
|
RR-TB
|
lineage4.9
|
None
|
SRR11342687
|
RR-TB
|
lineage4.2.2.2
|
None
|
ERR867538
|
Other
|
lineage4.2.2.2
|
None
|
ERR2513259
|
Other
|
lineage3
|
None
|
SRR1181237
|
Sensitive
|
lineage2.2.1;lineage4
|
None
|
ERR11465776
|
Sensitive
|
lineage4.1.1.3
|
None
|
ERR736837
|
Pre-XDR-TB
|
lineage4.9
|
None
|
SRR18003038
|
Other
|
lineage2.2.1
|
None
|
ERR867575
|
Other
|
lineage4.9
|
None
|
ERR4769408
|
Other
|
La1.3
|
None
|
ERR2027257
|
Other
|
lineage4.1.2.1
|
None
|
ERR3275941
|
RR-TB
|
lineage4.3
|
nl
|
SRR1184114
|
Sensitive
|
lineage2.2.1;lineage4.9
|
None
|
SRR12708371
|
HR-TB
|
lineage4.1.1.3
|
None
|
ERR10796618
|
Other
|
lineage4.3.4.1
|
None
|
SRR6045603
|
Other
|
lineage4.1.1.3
|
None
|
SRR6982196
|
Sensitive
|
|
None
|
SRR2101312
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR7070521
|
Other
|
lineage4.2.1.1
|
None
|
SRR7755688
|
Pre-XDR-TB
|
lineage4.2.1
|
None
|
SRR7645927
|
Other
|
lineage4.8
|
None
|
SRR12708407
|
HR-TB
|
lineage4.3.2.1
|
None
|
SRR10315579
|
Other
|
lineage2.2.1.1
|
None
|
ERR978762
|
Other
|
lineage4.8
|
None
|
SRR11342691
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR502482
|
Sensitive
|
lineage4.9
|
None
|
SRR5818647
|
Other
|
lineage4.3.4.2.1
|
None
|
ERR4818561
|
Sensitive
|
lineage4.9
|
None
|
ERR1063855
|
Other
|
lineage4.9
|
None
|
ERR978748
|
Other
|
lineage4.8
|
None
|
SRR1180148
|
Sensitive
|
lineage4.9
|
None
|
SRR11342660
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR7070293
|
Other
|
lineage4.8
|
None
|
SRR6046020
|
Other
|
lineage3
|
None
|
ERR502479
|
RR-TB
|
lineage4.9
|
None
|
SRR19304104
|
Other
|
lineage4.8
|
None
|
SRR5341460
|
Other
|
lineage3
|
None
|
ERR3797063
|
Sensitive
|
La3;lineage4.9
|
None
|
SRR1175508
|
Sensitive
|
lineage4.9
|
None
|
ERR4972567
|
MDR-TB
|
lineage4.3.2
|
None
|
ERR4796472
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR911930
|
Other
|
lineage4.8
|
None
|
SRR7496471
|
Sensitive
|
lineage4
|
None
|
ERR4816198
|
Sensitive
|
lineage4.1.3
|
None
|
ERR502473
|
RR-TB
|
lineage4.9
|
None
|
SRR1184308
|
Sensitive
|
lineage4.9
|
None
|
ERR2027290
|
Other
|
lineage3.1.2.1;lineage4.9
|
None
|
SRR18002903
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR867540
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR18003047
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR18002945
|
Other
|
lineage2.2.1
|
None
|
SRR11342653
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR12708392
|
Other
|
lineage2.2.1
|
None
|
ERR867572
|
Other
|
lineage4.9
|
None
|
SRR18003027
|
Other
|
lineage2.2.1
|
None
|
SRR18002967
|
HR-TB
|
lineage2.2.1
|
None
|
SRR12062542
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR11465301
|
Other
|
lineage4.3.4.2.1
|
None
|
SRR18003012
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR6046359
|
Other
|
lineage4.7
|
None
|
ERR867541
|
MDR-TB
|
lineage4.2.1
|
None
|
SRR1183054
|
Sensitive
|
lineage4.9
|
None
|
SRR1173310
|
Other
|
lineage3.1.1
|
None
|
SRR7443724
|
Sensitive
|
lineage4.9
|
None
|
SRR7443727
|
Sensitive
|
lineage4.9
|
None
|
SRR1181214
|
Other
|
lineage4.9
|
None
|
SRR7443740
|
Sensitive
|
lineage4.9
|
None
|
SRR6044952
|
Other
|
lineage4.9
|
None
|
SRR6045909
|
Other
|
lineage4.8.1
|
None
|
SRR7646018
|
MDR-TB
|
lineage4.2.1
|
None
|
ERR867544
|
Other
|
lineage4.9
|
None
|
ERR867570
|
RR-TB
|
lineage4.9
|
None
|
SRR023487
|
RR-TB
|
lineage2.2.1
|
None
|
SRR10315693
|
RR-TB
|
lineage4.1.2
|
None
|
SRR1140736
|
Other
|
lineage4.1.2.1
|
None
|
SRR1175513
|
Sensitive
|
lineage4.9
|
None
|
SRR1180410
|
Sensitive
|
lineage4.9
|
None
|
SRR7069097
|
Other
|
lineage3.1.2.1
|
None
|
SRR18003030
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR6855695
|
Sensitive
|
lineage4.8
|
None
|
ERR10796591
|
Other
|
lineage4.9
|
None
|
SRR18002930
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR18002947
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4798823
|
HR-TB
|
lineage4
|
None
|
ERR4818904
|
Other
|
lineage4.8
|
None
|
ERR4819314
|
Other
|
lineage1.1.1
|
None
|
ERR10762275
|
MDR-TB
|
lineage4.2.1
|
None
|
SAMEA3501063
|
RR-TB
|
lineage4.8
|
None
|
SRR1173170
|
Other
|
lineage4.9
|
None
|
SRR1173848
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
SRR1181325
|
Sensitive
|
lineage4.9
|
None
|
SRR6982075
|
Sensitive
|
lineage4.9
|
None
|
ERR4816762
|
Sensitive
|
lineage4.9
|
None
|
SRR9971223
|
Other
|
lineage2.2.1
|
None
|
SRR3675261
|
Other
|
lineage1.2.1.1
|
None
|
SRR6982078
|
Sensitive
|
lineage4.9
|
None
|
SRR7131149
|
Pre-XDR-TB
|
lineage4.8
|
None
|
ERR4769444
|
HR-TB
|
lineage4.9
|
None
|
SRR7443768
|
Sensitive
|
lineage4.9
|
None
|
SRR7443790
|
Sensitive
|
lineage4.9
|
None
|
SRR7755657
|
Other
|
lineage4.8
|
None
|
SRR6044936
|
Other
|
lineage4.6
|
None
|
ERR2514801
|
Other
|
lineage1.1.3.2
|
gb
|
SRR6397733
|
Other
|
lineage4.4.1.2
|
None
|
SRR22048536
|
Other
|
lineage4.3.3
|
None
|
ERR978733
|
RR-TB
|
lineage4.8
|
None
|
ERR4818646
|
Sensitive
|
lineage4.1.2.1
|
None
|
ERR4769417
|
Pre-XDR-TB
|
lineage4.9
|
None
|
SRR6982037
|
Sensitive
|
lineage4.1.1.1
|
None
|
ERR978746_ERR978747_ERR978748
|
RR-TB
|
lineage4.8
|
None
|
SRR6981922
|
Sensitive
|
lineage4.3.2.1
|
None
|
ERR6052085
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
SRR6982349
|
Sensitive
|
lineage2.2.1
|
None
|
SRR12708409
|
HR-TB
|
lineage4.3.3
|
None
|
SRR10315556
|
Sensitive
|
lineage2.2.1
|
None
|
SRR10315558
|
Sensitive
|
lineage2.2.1
|
None
|
SRR11342684
|
HR-TB
|
lineage4.4.1.1
|
None
|
SRR1180345
|
Other
|
lineage4.9
|
None
|
ERR10219876
|
Other
|
lineage4.3.4.2
|
None
|
SRR11342649
|
MDR-TB
|
lineage4.3.3
|
None
|
SRR18003013
|
Pre-XDR-TB
|
lineage4.4.2
|
None
|
SRR18002941
|
RR-TB
|
lineage2.2.1
|
None
|
SRR18003042
|
Other
|
lineage2.2.1
|
None
|
ERR867524
|
Pre-XDR-TB
|
lineage4.2.1
|
None
|
ERR473323
|
HR-TB
|
lineage4.9
|
None
|
ERR502474
|
RR-TB
|
lineage4.9
|
None
|
ERR978694_ERR978693
|
Other
|
lineage4.8
|
None
|
SRR1180444
|
Sensitive
|
lineage4.9
|
None
|
SRR6046839
|
Other
|
lineage4.9
|
None
|
SRR1180946
|
Sensitive
|
lineage2;lineage4.9
|
None
|
ERR2229436
|
Other
|
lineage4.8
|
None
|
SRR1140753
|
RR-TB
|
lineage4.3.4.2.1
|
None
|
SRR22424765
|
HR-TB
|
lineage4.8
|
None
|
SRR1172717
|
Sensitive
|
lineage4.9
|
None
|
SRR11342669
|
Other
|
lineage4.8
|
None
|
ERR978756
|
Other
|
lineage4.8
|
None
|
SRR7443743
|
Sensitive
|
lineage4.9
|
None
|
SRR12708413
|
HR-TB
|
lineage4.1.1.3
|
None
|
SRR6045957
|
Other
|
lineage4.9
|
None
|
SRR3675552
|
Other
|
lineage4.9
|
None
|
SRR6046117
|
Other
|
lineage4.9
|
None
|
ERR10796571
|
Other
|
lineage4.9
|
None
|
ERR10796589
|
Other
|
lineage4.9
|
None
|
ERR3806588
|
Other
|
lineage6.1.3
|
None
|
ERR10796633
|
Other
|
lineage4.3.4.2
|
None
|
ERR502490
|
Sensitive
|
lineage4.9
|
None
|
ERR978752
|
Other
|
lineage4.8
|
None
|
ERR983238
|
MDR-TB
|
lineage2.2.1.1
|
None
|
ERR10796559
|
Other
|
lineage4.9
|
None
|
ERR176741
|
Other
|
lineage4.9
|
None
|
ERR867569
|
Other
|
lineage4.9
|
None
|
SRR11342642
|
MDR-TB
|
lineage4.1.1.1
|
None
|
SRR1049672
|
Other
|
lineage3
|
None
|
SRR10869071
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR18002963
|
Other
|
lineage2.2.1
|
None
|
ERR10796620
|
Other
|
lineage4.1.1.1
|
None
|
SRR6045267
|
RR-TB
|
lineage4.8
|
None
|
ERR1140774
|
Sensitive
|
lineage5.1.1
|
None
|
ERR108125
|
RR-TB
|
lineage4.9
|
None
|
ERR867574
|
Other
|
lineage4.9
|
None
|
ERR216965
|
Sensitive
|
lineage4.9
|
None
|
SRR7070535
|
HR-TB
|
lineage4.1.2.1
|
None
|
SRR7131121
|
Other
|
lineage4.3.3
|
None
|
SRR7131147
|
Other
|
lineage4.1.2.1
|
None
|
SRR9971150
|
RR-TB
|
lineage4.8.1
|
None
|
ERR2228838
|
Other
|
lineage4.8
|
None
|
ERR4769508
|
RR-TB
|
lineage4.9
|
None
|
ERR867567
|
RR-TB
|
lineage3
|
None
|
SRR18002976
|
Other
|
lineage2.2.1
|
None
|
SAMEA3501065
|
RR-TB
|
lineage4.8
|
None
|
ERR6397161
|
Other
|
lineage4.2.2.2
|
None
|
ERR245810
|
Sensitive
|
lineage4.9.1
|
None
|
SRR19304094
|
Other
|
lineage6.1.2
|
None
|
SRR16627752
|
RR-TB
|
lineage4.4
|
None
|
ERR4769433
|
RR-TB
|
lineage4.9
|
None
|
SRR3675230
|
Other
|
lineage3;lineage4
|
None
|
SRR6982414
|
Sensitive
|
lineage4.9
|
None
|
SRR11972417
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR7069082
|
Other
|
lineage4.1.2.1
|
None
|
SRR1173515
|
Sensitive
|
lineage4.9
|
None
|
ERR10796563
|
Other
|
lineage4.3.3
|
None
|
SRR2101681
|
Sensitive
|
lineage4.8
|
None
|
SRR3675389
|
Other
|
lineage4.9
|
None
|
ERR4821811
|
Sensitive
|
lineage4.9
|
None
|
ERR072033
|
Sensitive
|
lineage3.1.2.2
|
None
|
SRR7645901
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4798769
|
Other
|
lineage1.1.3.3
|
None
|
ERR2512423
|
Other
|
lineage4.1.1.3
|
None
|
ERR560441
|
Sensitive
|
La1.2.BCG;lineage4.9
|
None
|
ERR10796572
|
Other
|
lineage4.3.4.1;lineage4.9
|
None
|
SRR7131251
|
Other
|
lineage2.2.1
|
None
|
ERR502478
|
RR-TB
|
lineage4.9
|
None
|
ERR6359074
|
HR-TB
|
lineage4.9
|
None
|
SRR18003007
|
MDR-TB
|
lineage4.5
|
None
|
SRR7443737
|
Sensitive
|
lineage4.9
|
None
|
ERR978760
|
RR-TB
|
lineage4.8
|
None
|
SRR7070329
|
Other
|
lineage3
|
None
|
ERR9896153
|
RR-TB
|
lineage4.4.1.1
|
None
|
SRR18003046
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR6045125
|
Other
|
lineage1.1.2
|
None
|
SRR6856032
|
Sensitive
|
lineage2.2.1
|
None
|
ERR4814639
|
HR-TB
|
lineage4.9
|
None
|
SRR5818586
|
RR-TB
|
lineage4.2.2.2
|
None
|
SRR3675509
|
Other
|
lineage4.9
|
None
|
ERR10796596
|
Other
|
lineage4.9
|
None
|
SRR5818612
|
Other
|
lineage4.2.2.2
|
None
|
SRR6046802
|
Other
|
lineage4.9
|
None
|
SRR6045496
|
Other
|
lineage6.1.3
|
None
|
SRR7068888
|
Sensitive
|
lineage2.2.1.2
|
None
|
SRR7086711
|
HR-TB
|
La1.2.BCG
|
None
|
SRR7069137
|
Other
|
lineage4.8
|
None
|
SRR6046376
|
Other
|
lineage3
|
None
|
SRR7131145
|
Other
|
lineage4.1.2.1
|
None
|
SRR7496523
|
Other
|
lineage4.7
|
None
|
SRR12708396
|
MDR-TB
|
lineage4.3.2.1
|
None
|
SRR7069839
|
Other
|
lineage4.8
|
None
|
SRR7645924
|
Pre-XDR-TB
|
lineage4.2.1
|
None
|
SRR18002887
|
MDR-TB
|
lineage2.2.1.1
|
None
|
SRR18002981
|
Other
|
lineage2.2.1
|
None
|
SRR6045778
|
Other
|
lineage3.1
|
None
|
ERR978727
|
Other
|
lineage4.8
|
None
|
SRR1140716
|
Other
|
lineage3
|
None
|
SRR11342662
|
MDR-TB
|
lineage4.8.1
|
None
|
SRR1175506
|
Sensitive
|
lineage4.9
|
None
|
SRR1180250
|
Other
|
lineage4.9
|
None
|
SRR14782539
|
MDR-TB
|
lineage4.2.1
|
None
|
SRR7504773
|
Sensitive
|
lineage4.9
|
None
|
SRR7645928
|
Other
|
lineage4.7
|
None
|
ERR10796560
|
Other
|
lineage4.9
|
None
|
ERR560438
|
Other
|
lineage4.9
|
None
|
ERR560449
|
HR-TB
|
La1.2.BCG;lineage4.9
|
None
|
ERR978750
|
RR-TB
|
lineage4.8
|
None
|
SRR18002874
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR3283046
|
Sensitive
|
lineage4.9
|
None
|
SRR7645906
|
Other
|
lineage2.2.1
|
None
|
SRR6045424
|
Other
|
lineage1.1.2
|
None
|
ERR6397155
|
HR-TB
|
lineage3
|
None
|
ERR245795
|
Sensitive
|
lineage3.1.1;lineage4.3.2.1
|
None
|
SRR5007161
|
RR-TB
|
lineage4.1.1.3.1;lineage4.9
|
None
|
SRR5007165
|
Other
|
lineage3
|
None
|
SRR10315464
|
MDR-TB
|
lineage4.4.1.1
|
None
|
SRR10993951
|
RR-TB
|
La1.6
|
None
|
ERR978761
|
Other
|
lineage4.8
|
None
|
ERR867542
|
HR-TB
|
lineage4.2.1.1;lineage4.3.3
|
None
|
SRR18003015
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR18003009
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR2513382
|
RR-TB
|
lineage4.1.1.3
|
None
|
ERR4819357
|
Sensitive
|
lineage4.9
|
None
|
SRR11342668
|
Pre-XDR-TB
|
lineage4.8.1
|
None
|
SRR11349191
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR7443736
|
Sensitive
|
lineage4.9
|
None
|
SRR023450
|
RR-TB
|
lineage2.2.1
|
None
|
SRR7444074
|
Sensitive
|
lineage4.9
|
None
|
SRR7443757
|
Sensitive
|
lineage4.9
|
None
|
ERR867568
|
Other
|
lineage2.2.1;lineage4
|
None
|
SRR1181215
|
Sensitive
|
lineage4.4.1.1.1
|
None
|
SRR11342640
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR4820742
|
Sensitive
|
lineage4.3.4.2.1
|
None
|
ERR9787336
|
RR-TB
|
lineage6.1.3
|
None
|
SRR1180300
|
Sensitive
|
lineage4.9
|
None
|
SRR1180375
|
Sensitive
|
lineage4.9
|
None
|
SRR19303820
|
RR-TB
|
lineage4.8
|
None
|
SRR7645977
|
MDR-TB
|
lineage4.2.1
|
None
|
SRR21727760
|
Other
|
lineage2.2.1
|
None
|
SRR7443725
|
Sensitive
|
lineage4.9
|
None
|
SRR1180391
|
Sensitive
|
lineage4.9
|
None
|
SRR14801325
|
Pre-XDR-TB
|
lineage4.2.1
|
None
|
SRR7070553
|
Other
|
lineage3
|
None
|
SRR6045464
|
Other
|
lineage4.1.1.3
|
None
|
ERR6052110
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
SRR18002974
|
Other
|
lineage2.2.1
|
None
|
SRR1735596
|
RR-TB
|
lineage4.9
|
None
|
ERR019855
|
Other
|
lineage3
|
None
|
ERR9117827
|
Other
|
lineage1.2.2.2
|
None
|
ERR4769554
|
RR-TB
|
lineage4.9
|
None
|
ERR10796628
|
Other
|
lineage4.3.3
|
None
|
SRR6045071
|
Other
|
lineage4.3.1.1
|
None
|
SRR6045191
|
Sensitive
|
lineage4.9
|
None
|
ERR10796626
|
Other
|
lineage4.1.2.1
|
None
|
SRR7645899
|
Other
|
lineage2.2.1
|
None
|
ERR4817667
|
HR-TB
|
lineage4.8
|
None
|
SRR5007163
|
Other
|
lineage3;lineage4.9
|
None
|
SRR6982014
|
Sensitive
|
lineage4.1.1
|
None
|
ERR323036
|
HR-TB
|
La3;M.canetti;lineage2.1;lineage4.9
|
None
|
SRR7069518
|
Other
|
lineage4.8
|
None
|
SRR7069835
|
Other
|
lineage2.2.1
|
None
|
ERR10796634
|
Other
|
lineage4.7
|
None
|
SRR1173385
|
Sensitive
|
lineage4.9
|
None
|
SRR7070080
|
Pre-XDR-TB
|
lineage3
|
None
|
SRR6982558
|
Sensitive
|
lineage4.3.4.2.1
|
None
|
SRR7443733
|
Sensitive
|
lineage4.9
|
None
|
SAMEA3501015
|
Other
|
lineage4.8
|
None
|
ERR867526
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR6044983
|
Other
|
lineage3.1.1
|
None
|
ERR3275709
|
HR-TB
|
lineage3
|
nl
|
SRR12708415
|
HR-TB
|
lineage2.2.1
|
None
|
ERR10796581
|
Other
|
lineage4.1.2
|
None
|
SRR7070369
|
Other
|
lineage1.2.2.2
|
None
|
SRR16156832
|
RR-TB
|
lineage2.2;lineage4
|
None
|
SRR12708418
|
HR-TB
|
lineage2.2.1
|
None
|
SRR1184021
|
Sensitive
|
lineage4.9
|
None
|
ERR067712
|
Sensitive
|
lineage4.9
|
None
|
SRR7755645
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR978761_ERR978762_ERR978760
|
RR-TB
|
lineage4.8
|
None
|
ERR4596904
|
MDR-TB
|
lineage3.1.1
|
None
|
SRR7131230
|
HR-TB
|
lineage4.3.4.2
|
None
|
ERR6359066
|
HR-TB
|
lineage4.9
|
None
|
SRR1175487
|
Sensitive
|
lineage4.9
|
None
|
SRR18002997
|
Other
|
lineage2.2.1
|
None
|
SRR18002984
|
MDR-TB
|
lineage2.2.2
|
None
|
ERR2229198
|
Sensitive
|
lineage4.8
|
None
|
ERR978750_ERR978752_ERR978751
|
RR-TB
|
lineage4.8
|
None
|
SRR18002937
|
Other
|
lineage2.2.1
|
None
|
SRR11349184
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR11342686
|
MDR-TB
|
lineage4.8
|
None
|
SRR11342651
|
MDR-TB
|
lineage4.1.1.1
|
None
|
SRR10315751
|
MDR-TB
|
lineage4.8
|
None
|
ERR978755_ERR978756_ERR978754_ERR978757
|
RR-TB
|
lineage4.8
|
None
|
SRR12199461
|
Sensitive
|
lineage1.1.3.1
|
None
|
SRR1180420
|
Sensitive
|
lineage4.9
|
None
|
SRR6855718
|
Sensitive
|
lineage4.8
|
None
|
SRR15276982
|
XDR-TB
|
lineage3
|
None
|
SRR6982076
|
Sensitive
|
lineage4.9
|
None
|
ERR867554
|
Other
|
lineage4.3.4.1
|
None
|
SRR6045591
|
Other
|
lineage4.1.2.1
|
None
|
SRR6045516
|
Other
|
lineage3.1.1
|
None
|
SRR6046482
|
Other
|
La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3
|
None
|
ERR978693
|
Other
|
lineage4.8
|
None
|
SRR1181283
|
Sensitive
|
lineage4.9
|
None
|
SRR13888750
|
Other
|
La2
|
None
|
SRR16156188
|
Sensitive
|
lineage4.9
|
None
|
SRR22424787
|
Sensitive
|
lineage4.9
|
None
|
ERR560448
|
HR-TB
|
La1.2.BCG;lineage4.9
|
None
|
ERR4816470
|
HR-TB
|
lineage3
|
None
|
ERR1140785
|
Sensitive
|
lineage1.1.2
|
None
|
ERR6359069
|
Sensitive
|
lineage4.9
|
None
|
ERR323068
|
Sensitive
|
lineage4.9
|
None
|
SRR12708370
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
SRR7443752
|
Sensitive
|
lineage4.9
|
None
|
SRR3675582
|
Other
|
lineage4.9
|
None
|
ERR6866125
|
Sensitive
|
lineage4.1.2.1
|
None
|
SRR7443722
|
Sensitive
|
lineage4.9
|
None
|
ERR736820
|
MDR-TB
|
lineage1.2.2.2
|
None
|
SRR6046484
|
Other
|
lineage1.2.2.2
|
None
|
SRR6044841
|
Other
|
lineage4.9
|
None
|
SRR12708411
|
HR-TB
|
lineage1.2.2.2
|
None
|
SAMEA3450033
|
Other
|
lineage4.8
|
None
|
SRR11342636
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR867523
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR20969542
|
Other
|
lineage4.4.2
|
None
|
ERR485006
|
HR-TB
|
lineage4.9
|
None
|
ERR4820030
|
Other
|
lineage4.9
|
None
|
DRR184629
|
Other
|
lineage2.2.1
|
None
|
SRR1180319
|
Sensitive
|
lineage4.9
|
None
|
SRR7443734
|
Sensitive
|
lineage4.9
|
None
|
ERR171142
|
Other
|
lineage3.1.1;lineage4.9
|
None
|
SRR7443726
|
Sensitive
|
lineage4.9
|
None
|
SRR1196545
|
Sensitive
|
lineage4.9
|
None
|
ERR4596902
|
MDR-TB
|
lineage3
|
None
|
SRR7444102
|
Sensitive
|
lineage4.9
|
None
|
ERR736816
|
Other
|
lineage4.9
|
None
|
ERR10796580
|
Other
|
lineage4
|
None
|
ERR10796593
|
Other
|
lineage4.3
|
None
|
SRR11342698
|
RR-TB
|
lineage4.4.1.1
|
None
|
ERR2660499
|
Sensitive
|
lineage4.1.1.3
|
None
|
ERR3276170
|
Other
|
lineage4.1.2.1
|
nl
|
SRR18002881
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4769552
|
Sensitive
|
La1.3
|
None
|
ERR6358951
|
Sensitive
|
lineage4.9
|
None
|
ERR4813263
|
MDR-TB
|
lineage4.8
|
None
|
ERR473367
|
Sensitive
|
lineage4.9
|
None
|
ERR2228900
|
Other
|
lineage4.8
|
None
|
SRR11342696
|
MDR-TB
|
lineage4.4.1.1.1
|
None
|
SRR21677886
|
Sensitive
|
lineage4.9
|
None
|
SRR1175512
|
Sensitive
|
lineage4.9
|
None
|
SRR16156697
|
RR-TB
|
lineage2.2.1
|
None
|
SRR11349153
|
RR-TB
|
lineage4.1.1.1
|
None
|
SRR1180399
|
Sensitive
|
lineage4.9
|
None
|
ERR752012
|
HR-TB
|
lineage1.1.1.1
|
None
|
SRR11342647
|
MDR-TB
|
lineage4.1.1.3
|
None
|
ERR3797065
|
RR-TB
|
lineage4.9
|
None
|
ERR978734_ERR978733_ERR978735
|
RR-TB
|
lineage4.8
|
None
|
SRR11342676
|
HR-TB
|
lineage4.6.2.2
|
None
|
ERR502485
|
Sensitive
|
lineage4.9
|
None
|
DRR188816
|
Sensitive
|
lineage4.2.2
|
None
|
SRR1062928
|
Other
|
lineage4.1.2.1;lineage4.9
|
None
|
ERR4819383
|
RR-TB
|
lineage4.9
|
None
|
SRR1180413
|
Sensitive
|
lineage4.9
|
None
|
ERR2229147
|
Other
|
lineage4.8
|
None
|
ERR978726_ERR978727
|
RR-TB
|
lineage4.8
|
None
|
SRR7443749
|
Sensitive
|
lineage4.9
|
None
|
SRR1181390
|
Sensitive
|
lineage2.2.1;lineage4.9
|
None
|
SRR6982053
|
Sensitive
|
lineage4.3.4.1;lineage4.9
|
None
|
DRR034348
|
Other
|
lineage2.2.1
|
None
|
ERR3283006
|
RR-TB
|
lineage4.9
|
None
|
ERR245846
|
Sensitive
|
lineage2.2.1
|
None
|
SRR1062918
|
Other
|
lineage3
|
None
|
ERR4819863
|
RR-TB
|
lineage4.9
|
None
|
ERR978754
|
RR-TB
|
lineage4.8
|
None
|
SRR7443731
|
Sensitive
|
lineage4.9
|
None
|
SRR7444084
|
Sensitive
|
lineage4.9
|
None
|
ERR5979454
|
Pre-XDR-TB
|
lineage3
|
None
|
SRR7444098
|
Sensitive
|
lineage4.9
|
None
|
ERR2027250
|
Other
|
lineage3.1.2
|
None
|
ERR736831
|
Other
|
lineage4.9
|
None
|
SRR18002987
|
Other
|
lineage2.2.1
|
None
|
ERR10796636
|
Other
|
lineage4.1.2.1
|
None
|
ERR10796577
|
Other
|
lineage4.9
|
None
|
SRR12708419
|
Other
|
lineage4.3.3
|
None
|
ERR6359070
|
Sensitive
|
lineage4.9
|
None
|
SRR1735598
|
RR-TB
|
lineage4.9
|
None
|
ERR4817069
|
RR-TB
|
|
None
|
SRR7070134
|
Other
|
lineage3.1.1
|
None
|
SRR11342695
|
MDR-TB
|
lineage4.8
|
None
|
ERR978757
|
RR-TB
|
lineage4.8
|
None
|
SRR11349207
|
RR-TB
|
lineage2.2.1
|
None
|
SRR6046766
|
Other
|
lineage3.1.1
|
None
|
SRR7443767
|
Sensitive
|
lineage4.9
|
None
|
SRR9971197
|
MDR-TB
|
lineage4.4.1.1.1
|
None
|
ERR4818851
|
RR-TB
|
lineage4.4.1.1
|
None
|
ERR867521
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR1173281
|
Other
|
lineage3
|
None
|
SRR18003024
|
RR-TB
|
lineage2.2.1
|
None
|
ERR10796555
|
Other
|
lineage4.1.2.1
|
None
|
ERR10796629
|
Other
|
lineage4.1;lineage4.9
|
None
|
ERR9786076
|
Sensitive
|
lineage3
|
None
|
SRR11342671
|
RR-TB
|
lineage4.1.3
|
None
|
SRR11342673
|
RR-TB
|
lineage4.3.4.2
|
None
|
SRR9971372
|
MDR-TB
|
lineage4.1.1.1
|
None
|
ERR502493
|
Sensitive
|
lineage4.9
|
None
|
ERR502498
|
Sensitive
|
lineage4.9
|
None
|
ERR4821272
|
RR-TB
|
lineage4.1.2.1
|
None
|
ERR9117788
|
Other
|
lineage3
|
None
|
SRR11342643
|
MDR-TB
|
lineage4.1.1.1
|
None
|
ERR10796558
|
Sensitive
|
lineage4.3.4.1;lineage4.9
|
None
|
SRR5007193
|
RR-TB
|
lineage4.1.1.3.1
|
None
|
SRR1180977
|
Sensitive
|
lineage4.9
|
None
|
SRR1181349
|
Sensitive
|
lineage4
|
None
|
SRR7069319
|
Other
|
lineage4.5
|
None
|
SRR18002909
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR19303815
|
Other
|
lineage4.8
|
None
|
SRR11349203
|
MDR-TB
|
lineage4.4.1.1
|
None
|
ERR036233
|
Sensitive
|
lineage1.1.2;lineage4.3.4.1
|
None
|
SRR18003049
|
Other
|
lineage2.2.1
|
None
|
SRR6046848
|
Other
|
lineage4.6.5
|
None
|
ERR2446154
|
Sensitive
|
lineage4.4.1.1
|
nl
|
SRR7535047
|
RR-TB
|
lineage4.6.1.1
|
None
|
SAMN02380982
|
MDR-TB
|
lineage4.3.4.2.1
|
None
|
SRR1002691
|
HR-TB
|
lineage4.2.1
|
None
|
SRR11342685
|
HR-TB
|
lineage4.4.1.1
|
None
|
ERR4819546
|
HR-TB
|
lineage3
|
None
|
ERR560440
|
Sensitive
|
La1.2.BCG;lineage4.9
|
None
|
SRR7069648
|
Other
|
lineage4.6.2.2
|
None
|
ERR4769516
|
Sensitive
|
lineage4.9
|
None
|
ERR5758436
|
Other
|
lineage2.2.2
|
None
|
SRR18002935
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4820484
|
Sensitive
|
lineage4.8
|
None
|
SRR1173740
|
Other
|
lineage3;lineage4
|
None
|
SRR14801652
|
HR-TB
|
lineage4.3.3
|
None
|
ERR3275615
|
Sensitive
|
lineage4.4.1.1
|
nl
|
ERR911929
|
Other
|
lineage4.8
|
None
|
SRR18002875
|
MDR-TB
|
lineage2.2.2
|
None
|
SRR18002961
|
Other
|
lineage2.2.1
|
None
|
ERR10796553
|
Other
|
lineage4.9
|
None
|
SRR18002980
|
Other
|
lineage2.2.1
|
None
|
SRR18003032
|
Other
|
lineage2.2.1
|
None
|
ERR978746
|
RR-TB
|
lineage4.8
|
None
|
SAMN02567682
|
Other
|
lineage4.6.1.1
|
ug
|
ERR1873549
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
ERR4819864
|
RR-TB
|
lineage1.1.3.1
|
None
|
ERR560443
|
Sensitive
|
La1.2.BCG;lineage4.9
|
None
|
SRR7443730
|
Sensitive
|
lineage4.9
|
None
|
SRR1181351
|
Sensitive
|
lineage4.9
|
None
|
ERR10796598
|
Other
|
lineage4.9
|
None
|
SRR18002998
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
SRR6982104
|
Sensitive
|
lineage2.2.1
|
None
|
SRR7070351
|
Sensitive
|
lineage3
|
None
|
SRR7070602
|
Other
|
lineage4.2.1
|
None
|
SRR7131195
|
Other
|
lineage2.2.1
|
None
|
SRR9971168
|
Other
|
lineage4.3.2.1
|
None
|
ERR10796566
|
Other
|
lineage4.9
|
None
|
SRR7443735
|
Sensitive
|
lineage4.9
|
None
|
SRR11342655
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR7443769
|
Sensitive
|
lineage4
|
None
|
ERR9992784
|
XDR-TB
|
lineage2.2.2
|
None
|
ERR473334
|
HR-TB
|
lineage4.9
|
None
|
SAMEA3501052
|
RR-TB
|
lineage4.8
|
None
|
SRR1181402
|
Sensitive
|
lineage4.9
|
None
|
SRR1181368
|
Other
|
lineage4.9
|
None
|
SRR7131216
|
Other
|
lineage4.1.2.1
|
None
|
ERR2229148
|
Other
|
lineage4.8
|
dk
|
ERR4769442
|
Sensitive
|
lineage4.9
|
None
|
SRR11342646
|
HR-TB
|
lineage3
|
None
|
ERR4819462
|
Sensitive
|
lineage4.9
|
None
|
SRR1180355
|
Sensitive
|
lineage4.9
|
None
|
SRR12062533
|
Pre-XDR-TB
|
lineage2.2.1.1
|
None
|
SRR7444103
|
Sensitive
|
lineage4.9
|
None
|
SRR6257067
|
HR-TB
|
lineage4.2.1
|
None
|
ERR323037
|
Other
|
lineage4.9
|
None
|
ERR2514430
|
Other
|
lineage3.1.2;lineage4.1.1.3.1
|
None
|
ERR2851360
|
Sensitive
|
lineage4.7
|
None
|
ERR502484
|
Sensitive
|
lineage4.9
|
None
|
SRR1172885
|
HR-TB
|
lineage4.9
|
None
|
ERR11465626
|
Sensitive
|
lineage4.3.4.2.1
|
None
|
ERR4596910
|
Sensitive
|
lineage4.9
|
None
|
ERR2600422
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR978747
|
Other
|
lineage4.8
|
None
|
ERR2027230
|
Other
|
lineage4.2.2.2
|
None
|
ERR3797062
|
RR-TB
|
lineage4.9
|
None
|
ERR1023509
|
Other
|
lineage4.9
|
None
|
ERR867522
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR5007168
|
Other
|
lineage4.8.2;lineage4.9
|
None
|
ERR867566
|
Other
|
lineage4.9
|
None
|
DRR185024
|
Other
|
lineage2.2.2
|
None
|
SRR11342638
|
MDR-TB
|
lineage4.4.1.1.1
|
None
|
SRR6044904
|
Other
|
lineage3
|
None
|
ERR3445487
|
Other
|
La1.7.X-unk4
|
None
|
ERR9285979
|
RR-TB
|
lineage3.1.1
|
None
|
SRR7443738
|
Sensitive
|
lineage4.9
|
None
|
SRR11342644
|
MDR-TB
|
lineage4.4.1.1.1
|
None
|
SRR6045944
|
Other
|
lineage4.1.2.1
|
None
|
SRR11349201
|
MDR-TB
|
lineage4.1.1.3
|
None
|
ERR10796578
|
Other
|
lineage2.2.1
|
None
|
SRR18002964
|
Other
|
lineage2.2.1
|
None
|
SRR18002994
|
MDR-TB
|
lineage4.2.2
|
None
|
DRR184903
|
Sensitive
|
lineage2.2.2
|
None
|
ERR978735
|
Other
|
lineage4.8
|
None
|
ERR502470
|
RR-TB
|
lineage4.9
|
None
|
SRR9971080
|
RR-TB
|
lineage2.2.1
|
None
|
ERR11465189
|
RR-TB
|
lineage4.9.1
|
None
|
ERR867571
|
Other
|
lineage4.9
|
None
|
SRR7645972
|
MDR-TB
|
lineage4.2.1
|
None
|
SRR18002908
|
Other
|
lineage2.2.1
|
None
|
SRR10315551
|
Sensitive
|
lineage2.2.1
|
None
|
SRR1062871
|
RR-TB
|
lineage4.3.4.2.1
|
None
|
SRR7069027
|
MDR-TB
|
lineage4.3.4.2
|
None
|
SRR7443723
|
Sensitive
|
lineage4.9
|
None
|
ERR867525
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR11465490
|
Sensitive
|
lineage4.1.2.1
|
None
|
ERR867573
|
Other
|
lineage4.9
|
None
|
ERR2851356
|
Sensitive
|
lineage4.9
|
None
|
ERR4815815
|
Sensitive
|
lineage4.9
|
None
|
ERR4769514
|
Other
|
La1.3
|
None
|
SAMEA3501070
|
RR-TB
|
lineage4.8
|
None
|
SRR11342664
|
MDR-TB
|
lineage2.2.2
|
None
|
SRR19303899
|
Other
|
lineage3
|
None
|
SAMEA3501046
|
RR-TB
|
lineage4.8
|
None
|
SRR7070144
|
Other
|
lineage4.8
|
None
|
SRR18003023
|
Other
|
lineage2.2.1
|
None
|
SAMEA3501067
|
RR-TB
|
lineage4.8
|
None
|
SRR7645971
|
Other
|
lineage2.2.1
|
None
|
SRR20632814
|
Sensitive
|
lineage4.9
|
None
|
SRR1173770
|
Other
|
lineage4.9
|
None
|
SRR6982106
|
Sensitive
|
lineage4.8
|
None
|
SRR1049559
|
MDR-TB
|
lineage4.3.4.2.1
|
None
|
ERR4818536
|
Other
|
lineage4.9
|
None
|
ERR1198990
|
Other
|
lineage4.6.1.1
|
ug
|
SRR7443732
|
Sensitive
|
lineage4.9
|
None
|
SRR7443751
|
Sensitive
|
lineage4.9
|
None
|
SRR7755649
|
MDR-TB
|
lineage4.2.1
|
None
|
ERR1140766
|
Sensitive
|
lineage1.1.2
|
None
|
ERR978734
|
RR-TB
|
lineage4.8
|
None
|
SRR17567917
|
RR-TB
|
lineage4.4.1.1
|
None
|
SRR18003002
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR017781
|
Other
|
lineage3
|
None
|