TB-Profiler result

Run: ERR4769514
Summary

Run ID: ERR4769514

Sample name:

Date: 01-04-2023 06:43:21

Number of reads: 483227

Percentage reads mapped: 22.59

Strain: La1.3

Drug-resistance: Other

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Drug resistance: This table reports drug-resistance associated mutations found in known resistance genes
Drug Resistance Supporting mutations
Lineage Table: The lineage is inferred by analysing lineage specific SNPs
Lineage Family Main Spoligotype RDs Frequency
La1 M.bovis None None 1.0
La1.3 M.bovis None None 1.0
Drug resistance-Associated Mutations: This table reports mutations found in candidate resistance genes which have been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction Drugs
pncA 2289073 p.His57Asp missense_variant 1.0 pyrazinamide
Non-Associated Mutations: This table reports mutations found in candidate resistance genes which have not been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction
gyrB 5139 c.-101C>T upstream_gene_variant 0.13
gyrB 5752 c.513G>A synonymous_variant 1.0
gyrA 6406 c.-896C>T upstream_gene_variant 1.0
gyrB 6446 p.Ala403Ser missense_variant 1.0
gyrA 6709 c.-593A>G upstream_gene_variant 0.12
gyrA 6730 c.-572A>C upstream_gene_variant 0.12
gyrA 6745 c.-557T>C upstream_gene_variant 0.14
gyrA 7362 p.Glu21Gln missense_variant 1.0
gyrA 7585 p.Ser95Thr missense_variant 1.0
gyrA 8285 c.984C>T synonymous_variant 1.0
gyrA 9143 c.1842T>C synonymous_variant 1.0
gyrA 9304 p.Gly668Asp missense_variant 1.0
fgd1 491742 c.960T>C synonymous_variant 1.0
rpoB 760112 c.306T>C synonymous_variant 0.12
rpoB 760121 c.315T>A synonymous_variant 0.19
rpoB 760130 p.Asp108Glu missense_variant 0.18
rpoB 760138 c.333delA frameshift_variant 0.19
rpoB 760141 p.Pro112Leu missense_variant 0.19
rpoB 760144 p.Val113Asp missense_variant 0.19
rpoB 760145 c.340dupG frameshift_variant 0.19
rpoB 760172 c.366G>C synonymous_variant 0.2
rpoB 760181 c.375T>G synonymous_variant 0.19
rpoB 760184 c.378A>G synonymous_variant 0.19
rpoB 760185 c.379C>T synonymous_variant 0.19
rpoB 760199 c.393C>G synonymous_variant 0.2
rpoB 760220 c.414C>T synonymous_variant 0.15
rpoB 760235 c.429T>C synonymous_variant 0.18
rpoB 760407 p.Ser201Gly missense_variant 0.22
rpoB 760418 c.612G>A synonymous_variant 0.2
rpoB 760997 c.1191G>C synonymous_variant 0.12
rpoB 761006 c.1200C>G synonymous_variant 0.21
rpoB 761015 c.1209G>C synonymous_variant 0.28
rpoB 761021 c.1215G>A synonymous_variant 0.24
rpoB 761027 c.1221A>G synonymous_variant 0.29
rpoB 761030 c.1224G>T synonymous_variant 0.22
rpoB 761037 c.1231T>C synonymous_variant 0.29
rpoB 761051 c.1245G>T synonymous_variant 0.22
rpoB 761054 c.1248G>C synonymous_variant 0.22
rpoB 761057 c.1251G>C synonymous_variant 0.28
rpoB 761063 c.1257C>T synonymous_variant 0.25
rpoB 761071 p.Lys422Arg missense_variant 0.23
rpoB 761084 c.1278C>A synonymous_variant 0.25
rpoB 761088 c.1282_1283delAGinsTC synonymous_variant 0.25
rpoB 761097 c.1291_1293delAGCinsTCG synonymous_variant 0.33
rpoB 761102 c.1296A>G synonymous_variant 0.36
rpoB 761133 c.1327T>C synonymous_variant 0.32
rpoB 761138 c.1332C>G synonymous_variant 0.25
rpoB 761147 c.1341C>T synonymous_variant 0.27
rpoB 761150 c.1344A>T synonymous_variant 0.3
rpoB 761156 c.1350G>C synonymous_variant 0.17
rpoB 761159 c.1353G>C synonymous_variant 0.18
rpoB 761162 c.1356G>C synonymous_variant 0.22
rpoB 761165 c.1359G>C synonymous_variant 0.22
rpoB 761168 c.1362C>G synonymous_variant 0.22
rpoB 761171 c.1365C>T synonymous_variant 0.24
rpoB 761180 c.1374A>C synonymous_variant 0.25
rpoB 761189 c.1383T>C synonymous_variant 0.29
rpoB 761195 c.1389G>C synonymous_variant 0.35
rpoB 761198 c.1392G>C synonymous_variant 0.35
rpoB 761204 c.1398C>T synonymous_variant 0.29
rpoB 761213 c.1407G>T synonymous_variant 0.24
rpoB 761234 c.1428G>C synonymous_variant 0.24
rpoB 761249 c.1443A>G synonymous_variant 0.25
rpoB 761255 c.1449T>G synonymous_variant 0.23
rpoB 761258 c.1452G>A synonymous_variant 0.17
rpoB 761261 c.1455G>C synonymous_variant 0.17
rpoB 761264 c.1458C>G synonymous_variant 0.17
rpoB 761273 c.1467T>C synonymous_variant 0.18
rpoB 761282 c.1476C>T synonymous_variant 0.22
rpoB 761294 c.1488G>C synonymous_variant 0.15
rpoB 761300 c.1494G>C synonymous_variant 0.13
rpoB 761303 c.1497G>C synonymous_variant 0.12
rpoB 761819 c.2013G>T synonymous_variant 0.14
rpoB 761828 p.His674Gln missense_variant 0.14
rpoB 761834 c.2028T>G synonymous_variant 0.14
rpoB 761852 c.2046C>G synonymous_variant 0.14
rpoB 761867 c.2061C>A synonymous_variant 0.19
rpoB 761868 p.Asp688Gln missense_variant 0.14
rpoB 761873 c.2067A>T synonymous_variant 0.14
rpoB 761894 p.Ile696Met missense_variant 0.12
rpoB 761906 c.2100C>T synonymous_variant 0.14
rpoB 761909 c.2103T>C synonymous_variant 0.14
rpoB 761912 c.2106T>C synonymous_variant 0.14
rpoB 761915 p.Asp703Glu missense_variant 0.14
rpoB 761916 p.Asp704Asn missense_variant 0.14
rpoB 761921 c.2115C>T synonymous_variant 0.19
rpoB 761943 c.2137C>T synonymous_variant 0.25
rpoB 761948 c.2142G>C synonymous_variant 0.29
rpoB 761951 c.2145G>C synonymous_variant 0.3
rpoB 761954 c.2148C>G synonymous_variant 0.32
rpoB 761969 c.2163G>A synonymous_variant 0.44
rpoB 761996 c.2190C>T synonymous_variant 0.42
rpoB 762002 c.2196C>G synonymous_variant 0.41
rpoB 762003 p.Asn733Gln missense_variant 0.52
rpoB 762008 c.2202C>T synonymous_variant 0.42
rpoB 762011 c.2205G>C synonymous_variant 0.5
rpoB 762014 c.2208C>G synonymous_variant 0.39
rpoB 762026 c.2220G>C synonymous_variant 0.46
rpoB 762029 c.2223C>G synonymous_variant 0.44
rpoB 762038 c.2232C>T synonymous_variant 0.4
rpoB 762053 c.2247T>C synonymous_variant 0.52
rpoB 762065 c.2259T>C synonymous_variant 0.53
rpoB 762080 c.2274G>C synonymous_variant 0.37
rpoB 762086 c.2280G>C synonymous_variant 0.42
rpoB 762092 c.2286G>A synonymous_variant 0.35
rpoB 762098 c.2292C>T synonymous_variant 0.32
rpoB 762114 p.Ile770Val missense_variant 0.32
rpoB 762140 c.2334G>C synonymous_variant 0.2
rpoB 762143 c.2337T>C synonymous_variant 0.2
rpoC 762458 c.-912C>T upstream_gene_variant 0.18
rpoC 762470 c.-900G>C upstream_gene_variant 0.18
rpoB 762489 p.Val895Gln missense_variant 0.18
rpoC 762494 c.-876G>A upstream_gene_variant 0.18
rpoC 762509 c.-861T>C upstream_gene_variant 0.17
rpoB 762510 p.Ala902Ser missense_variant 0.17
rpoC 762521 c.-849C>G upstream_gene_variant 0.17
rpoC 762524 c.-846G>T upstream_gene_variant 0.15
rpoC 762527 c.-843G>C upstream_gene_variant 0.17
rpoC 762533 c.-837T>C upstream_gene_variant 0.15
rpoC 762536 c.-834T>C upstream_gene_variant 0.14
rpoC 762545 c.-825C>G upstream_gene_variant 0.15
rpoC 762554 c.-816G>C upstream_gene_variant 0.14
rpoC 762560 c.-810A>T upstream_gene_variant 0.14
rpoC 762899 c.-471G>C upstream_gene_variant 0.17
rpoC 762917 c.-453C>T upstream_gene_variant 0.18
rpoC 762920 c.-450C>T upstream_gene_variant 0.15
rpoC 762923 c.-447C>G upstream_gene_variant 0.14
rpoC 762929 c.-441G>T upstream_gene_variant 0.15
rpoC 762947 c.-423C>G upstream_gene_variant 0.15
rpoC 762956 c.-414G>T upstream_gene_variant 0.17
rpoC 762959 c.-411G>C upstream_gene_variant 0.17
rpoC 762962 c.-408C>T upstream_gene_variant 0.17
rpoC 762989 c.-381G>C upstream_gene_variant 0.21
rpoC 762995 c.-375G>T upstream_gene_variant 0.21
rpoC 763013 c.-357C>G upstream_gene_variant 0.21
rpoC 763028 c.-342T>C upstream_gene_variant 0.24
rpoC 763031 c.-339T>C upstream_gene_variant 1.0
rpoC 763034 c.-336C>T upstream_gene_variant 0.32
rpoC 763040 c.-330C>G upstream_gene_variant 0.35
rpoC 763049 c.-321G>A upstream_gene_variant 0.39
rpoC 763053 c.-317T>C upstream_gene_variant 0.41
rpoC 763067 c.-303C>T upstream_gene_variant 0.37
rpoC 763070 c.-300T>C upstream_gene_variant 0.41
rpoB 763074 p.Thr1090Val missense_variant 0.38
rpoC 763082 c.-288C>T upstream_gene_variant 0.44
rpoC 763085 c.-285C>A upstream_gene_variant 0.44
rpoC 763100 c.-270G>A upstream_gene_variant 0.5
rpoC 763103 c.-267G>C upstream_gene_variant 0.5
rpoC 763115 c.-255T>C upstream_gene_variant 0.53
rpoC 763127 c.-243G>C upstream_gene_variant 0.47
rpoC 763130 c.-240G>A upstream_gene_variant 0.47
rpoC 763133 c.-237G>C upstream_gene_variant 0.46
rpoC 763160 c.-210G>C upstream_gene_variant 0.46
rpoC 763166 c.-204A>G upstream_gene_variant 0.3
rpoC 763169 c.-201A>G upstream_gene_variant 0.38
rpoC 763172 c.-198G>C upstream_gene_variant 0.38
rpoC 763181 c.-189G>C upstream_gene_variant 0.43
rpoC 763405 c.36C>T synonymous_variant 0.15
rpoC 763408 c.39T>C synonymous_variant 0.15
rpoC 763409 c.40_42delCTTinsTTG synonymous_variant 0.15
rpoC 763414 c.45T>C synonymous_variant 0.18
rpoC 763416 p.Thr16Ser missense_variant 0.18
rpoC 763420 c.51G>A synonymous_variant 0.2
rpoC 763430 c.61_63delAGGinsCGC synonymous_variant 0.18
rpoC 763433 p.Gln22Asn missense_variant 0.17
rpoC 763444 c.75T>C synonymous_variant 0.31
rpoC 763456 c.87A>G synonymous_variant 0.36
rpoC 763468 c.99G>C synonymous_variant 0.41
rpoC 763486 c.117T>C synonymous_variant 0.47
rpoC 763492 c.123G>C synonymous_variant 0.47
rpoC 763507 c.138G>C synonymous_variant 0.45
rpoC 763528 c.159G>C synonymous_variant 0.39
rpoC 763531 c.162G>C synonymous_variant 0.35
rpoC 763537 c.168C>G synonymous_variant 0.43
rpoC 763546 c.177A>G synonymous_variant 0.5
rpoC 763558 c.189C>T synonymous_variant 0.4
rpoC 763570 c.201G>T synonymous_variant 0.41
rpoC 763573 c.204G>C synonymous_variant 0.52
rpoC 763594 c.225C>T synonymous_variant 0.48
rpoC 763603 c.234C>T synonymous_variant 0.33
rpoC 763615 c.246G>C synonymous_variant 0.21
rpoC 763618 c.249C>T synonymous_variant 0.24
rpoC 763621 c.252C>T synonymous_variant 0.19
rpoC 763630 c.261G>T synonymous_variant 0.23
rpoC 763642 c.273G>C synonymous_variant 0.38
rpoC 763648 c.279C>T synonymous_variant 0.3
rpoC 763657 c.288G>A synonymous_variant 0.2
rpoC 763660 c.291T>G synonymous_variant 0.35
rpoC 763666 c.297G>A synonymous_variant 0.25
rpoC 763669 c.300C>G synonymous_variant 0.24
rpoC 763672 c.303C>G synonymous_variant 0.24
rpoC 763675 c.306C>G synonymous_variant 0.19
rpoC 763696 c.327T>C synonymous_variant 0.22
rpoC 763699 c.330G>T synonymous_variant 0.19
rpoC 763702 c.333C>G synonymous_variant 0.17
rpoC 763705 c.336G>C synonymous_variant 0.21
rpoC 763708 c.339G>C synonymous_variant 0.19
rpoC 763714 c.345G>C synonymous_variant 0.18
rpoC 763717 c.348T>C synonymous_variant 0.26
rpoC 763744 c.375G>C synonymous_variant 0.17
rpoC 763987 c.618C>T synonymous_variant 0.13
rpoC 763991 p.Ile208Leu missense_variant 0.19
rpoC 764020 c.651C>T synonymous_variant 0.31
rpoC 764023 c.654G>T synonymous_variant 0.35
rpoC 764024 c.655_657delTTGinsCTC synonymous_variant 0.29
rpoC 764029 p.Glu220Asp missense_variant 0.28
rpoC 764032 p.Asp221Glu missense_variant 0.28
rpoC 764040 p.Ser224Thr missense_variant 0.24
rpoC 764044 c.675T>C synonymous_variant 0.28
rpoC 764056 c.687_688insA frameshift_variant 0.29
rpoC 764071 c.702G>C synonymous_variant 0.29
rpoC 764075 p.Val236Ile missense_variant 0.29
rpoC 764083 c.714A>G synonymous_variant 0.28
rpoC 764084 p.Asn239Leu missense_variant 0.28
rpoC 764089 c.720C>G synonymous_variant 0.26
rpoC 764098 c.729A>G synonymous_variant 0.29
rpoC 764101 c.732C>G synonymous_variant 0.28
rpoC 764110 c.741C>T synonymous_variant 0.26
rpoC 764128 c.759C>G synonymous_variant 0.3
rpoC 764341 c.972G>T synonymous_variant 0.13
rpoC 764353 c.984G>T synonymous_variant 0.24
rpoC 764365 c.996C>T synonymous_variant 0.24
rpoC 764368 c.999C>A synonymous_variant 0.22
rpoC 764371 c.1002G>T synonymous_variant 0.21
rpoC 764377 c.1008C>G synonymous_variant 0.21
rpoC 764387 c.1018_1020delTTGinsCTC synonymous_variant 0.17
rpoC 764410 c.1041G>C synonymous_variant 0.12
rpoC 764446 c.1077T>C synonymous_variant 0.13
rpoC 764653 c.1284G>C synonymous_variant 0.13
rpoC 764662 c.1293G>C synonymous_variant 0.15
rpoC 764692 c.1323C>T synonymous_variant 0.15
rpoC 764713 c.1344G>T synonymous_variant 0.21
rpoC 764716 c.1347G>C synonymous_variant 0.24
rpoC 764746 c.1377G>T synonymous_variant 0.27
rpoC 764752 c.1383G>C synonymous_variant 0.26
rpoC 764755 c.1386C>T synonymous_variant 0.26
rpoC 764758 c.1389C>G synonymous_variant 0.26
rpoC 764764 c.1395T>C synonymous_variant 0.34
rpoC 764780 c.1411_1413delAGCinsTCG synonymous_variant 0.39
rpoC 764785 c.1416C>A synonymous_variant 0.41
rpoC 764797 c.1428G>C synonymous_variant 0.42
rpoC 764804 p.Gln479Lys missense_variant 0.42
rpoC 764810 p.Pro481Val missense_variant 0.44
rpoC 764815 c.1446A>G synonymous_variant 0.44
rpoC 764824 c.1455T>C synonymous_variant 0.48
rpoC 764827 c.1458G>C synonymous_variant 0.48
rpoC 764854 c.1485G>C synonymous_variant 0.44
rpoC 764858 c.1489T>C synonymous_variant 0.45
rpoC 764863 c.1494G>C synonymous_variant 0.45
rpoC 764869 c.1500C>T synonymous_variant 0.41
rpoC 764875 c.1506C>T synonymous_variant 0.4
rpoC 764878 c.1509C>G synonymous_variant 0.4
rpoC 764887 c.1518G>T synonymous_variant 0.41
rpoC 764888 c.1519T>C synonymous_variant 0.43
rpoC 764902 c.1533C>A synonymous_variant 0.44
rpoC 764911 c.1542A>G synonymous_variant 0.43
rpoC 764912 p.Met515Gln missense_variant 0.43
rpoC 764917 c.1548G>C synonymous_variant 0.39
rpoC 764920 c.1551G>C synonymous_variant 0.39
rpoC 764923 c.1554A>G synonymous_variant 0.38
rpoC 764941 c.1572G>C synonymous_variant 0.32
rpoC 764948 c.1579T>C synonymous_variant 0.37
rpoC 764962 c.1593G>C synonymous_variant 0.22
rpoC 764968 c.1599T>C synonymous_variant 0.26
rpoC 766291 c.2922G>T synonymous_variant 0.2
rpoC 766297 c.2928G>C synonymous_variant 0.22
rpoC 766300 c.2931C>T synonymous_variant 0.22
rpoC 766309 c.2940G>C synonymous_variant 0.22
rpoC 766312 c.2943T>C synonymous_variant 0.22
rpoC 766315 c.2946C>G synonymous_variant 0.22
rpoC 766348 c.2979A>G synonymous_variant 0.25
rpoC 766351 c.2982C>T synonymous_variant 0.25
rpoC 766357 c.2988C>T synonymous_variant 0.22
rpoC 766363 c.2994G>C synonymous_variant 0.2
rpoC 766369 c.3000C>A synonymous_variant 0.18
rpoC 766375 c.3006C>G synonymous_variant 0.18
rpoC 766381 c.3012C>T synonymous_variant 0.2
rpoC 766384 c.3015A>G synonymous_variant 0.2
rpoC 766390 c.3021C>T synonymous_variant 0.22
rpoC 766408 c.3039C>T synonymous_variant 0.25
rpoC 766501 c.3132G>T synonymous_variant 0.18
rpoC 766504 c.3135G>T synonymous_variant 0.18
rpoC 766510 c.3141C>G synonymous_variant 0.2
rpoC 766522 c.3153C>T synonymous_variant 0.22
rpoC 766528 c.3159T>A synonymous_variant 0.25
rpoC 766530 p.Arg1054Gln missense_variant 0.22
rpoC 766537 c.3168G>A synonymous_variant 0.22
rpoC 766546 p.Glu1059Asp missense_variant 0.22
rpoC 766549 c.3180G>T synonymous_variant 0.22
rpoC 766573 c.3204T>G synonymous_variant 0.2
rpoC 766588 c.3219G>A synonymous_variant 0.25
rpoC 766948 c.3579G>T synonymous_variant 0.12
rpoC 766951 c.3582G>C synonymous_variant 0.12
rpoC 766960 c.3591C>T synonymous_variant 0.14
rpoC 766963 c.3594T>C synonymous_variant 0.14
rpoC 766972 c.3603G>A synonymous_variant 0.18
rpoC 766990 c.3621G>C synonymous_variant 0.21
rpoC 766996 c.3627C>T synonymous_variant 0.25
rpoC 767014 c.3645G>C synonymous_variant 0.35
rpoC 767017 c.3648C>G synonymous_variant 0.35
rpoC 767020 c.3651C>G synonymous_variant 0.35
rpoC 767023 c.3654C>T synonymous_variant 0.35
rpoC 767035 c.3666G>C synonymous_variant 0.38
rpoC 767041 c.3672G>A synonymous_variant 0.38
rpoC 767062 c.3693C>T synonymous_variant 0.43
rpoC 767065 c.3696G>C synonymous_variant 0.43
rpoC 767066 c.3697C>T synonymous_variant 0.43
rpoC 767074 c.3705T>C synonymous_variant 0.43
rpoC 767080 c.3711G>T synonymous_variant 0.39
rpoC 767093 c.3724_3726delAGCinsTCG synonymous_variant 0.35
rpoC 767098 c.3729T>C synonymous_variant 0.3
rpoC 767104 c.3735C>G synonymous_variant 0.32
rpoC 767106 p.Asn1246Ile missense_variant 0.35
rpoC 767122 c.3753C>T synonymous_variant 0.37
rpoC 767125 c.3756G>C synonymous_variant 0.37
rpoC 767146 c.3777G>T synonymous_variant 0.29
rpoC 767167 c.3798C>T synonymous_variant 0.21
rpoC 767180 p.Ala1271Gln missense_variant 0.14
rpoC 767185 c.3816G>T synonymous_variant 0.17
rpoC 767197 c.3828G>A synonymous_variant 0.14
mmpL5 775639 p.Ile948Val missense_variant 1.0
mmpL5 776100 p.Thr794Ile missense_variant 1.0
rpsL 781395 c.-165T>C upstream_gene_variant 1.0
rplC 800618 c.-191T>C upstream_gene_variant 0.12
rplC 800630 c.-179G>A upstream_gene_variant 0.12
rplC 800654 c.-155T>C upstream_gene_variant 0.12
rplC 800672 c.-137G>C upstream_gene_variant 0.17
rplC 800690 c.-119C>T upstream_gene_variant 0.14
rplC 800693 c.-116A>T upstream_gene_variant 0.15
rplC 800703 c.-106T>C upstream_gene_variant 0.15
rplC 800714 c.-95C>T upstream_gene_variant 0.14
rplC 800715 c.-94A>C upstream_gene_variant 0.14
rplC 800720 c.-89T>C upstream_gene_variant 0.14
rplC 800735 c.-74C>G upstream_gene_variant 0.14
fbiC 1302899 c.-32A>G upstream_gene_variant 1.0
fbiC 1304556 p.Asp542Glu missense_variant 0.17
fbiC 1304559 p.Glu543Asp missense_variant 0.18
fbiC 1304562 c.1632G>C synonymous_variant 0.18
fbiC 1304567 p.Phe546Tyr missense_variant 0.18
fbiC 1304574 c.1644C>G synonymous_variant 0.25
fbiC 1304580 c.1650T>G synonymous_variant 0.23
fbiC 1304610 c.1680C>G synonymous_variant 0.31
fbiC 1304613 c.1683T>C synonymous_variant 0.33
fbiC 1304619 c.1689G>A synonymous_variant 0.33
fbiC 1304625 c.1695C>T synonymous_variant 0.31
fbiC 1304634 c.1704C>G synonymous_variant 0.33
fbiC 1304640 c.1710A>C synonymous_variant 0.31
fbiC 1304658 c.1728C>G synonymous_variant 0.31
fbiC 1304660 p.Tyr577Phe missense_variant 0.33
fbiC 1304662 p.Ser578Thr missense_variant 0.36
fbiC 1304671 c.1742delT frameshift_variant 0.33
fbiC 1304674 p.Gly582Arg missense_variant 0.33
fbiC 1304677 c.1747_1748insC frameshift_variant 0.33
fbiC 1304691 c.1761G>T synonymous_variant 0.31
fbiC 1304694 c.1764A>G synonymous_variant 0.31
fbiC 1304700 c.1770G>A synonymous_variant 0.17
fbiC 1304703 c.1773C>G synonymous_variant 0.17
fbiC 1304715 c.1785G>C synonymous_variant 0.15
fbiC 1304718 c.1788C>A synonymous_variant 0.14
rrs 1471659 n.-187C>T upstream_gene_variant 1.0
rrs 1471914 n.69A>G non_coding_transcript_exon_variant 0.39
rrs 1471918 n.73A>T non_coding_transcript_exon_variant 0.41
rrs 1471923 n.78T>C non_coding_transcript_exon_variant 0.39
rrs 1471925 n.81delC non_coding_transcript_exon_variant 0.39
rrs 1471931 n.87delA non_coding_transcript_exon_variant 0.39
rrs 1471934 n.89A>G non_coding_transcript_exon_variant 0.39
rrs 1471938 n.93T>A non_coding_transcript_exon_variant 0.39
rrs 1471943 n.98T>C non_coding_transcript_exon_variant 0.41
rrs 1472023 n.178G>T non_coding_transcript_exon_variant 0.41
rrs 1472028 n.183A>T non_coding_transcript_exon_variant 0.4
rrs 1472030 n.185G>C non_coding_transcript_exon_variant 0.33
rrs 1472031 n.186G>T non_coding_transcript_exon_variant 0.31
rrs 1472032 n.187G>A non_coding_transcript_exon_variant 0.33
rrs 1472033 n.188A>T non_coding_transcript_exon_variant 0.31
rrs 1472034 n.189T>C non_coding_transcript_exon_variant 0.31
rrs 1472040 n.195T>G non_coding_transcript_exon_variant 0.36
rrs 1472041 n.196C>T non_coding_transcript_exon_variant 0.36
rrs 1472042 n.197T>G non_coding_transcript_exon_variant 0.36
rrs 1472043 n.198T>G non_coding_transcript_exon_variant 0.36
rrs 1472053 n.211_212delGC non_coding_transcript_exon_variant 0.36
rrs 1472057 n.212C>A non_coding_transcript_exon_variant 0.33
rrs 1472062 n.217G>T non_coding_transcript_exon_variant 0.4
rrs 1472068 n.223T>C non_coding_transcript_exon_variant 0.43
rrs 1472069 n.224G>A non_coding_transcript_exon_variant 0.43
rrs 1472075 n.230A>G non_coding_transcript_exon_variant 0.56
rrs 1472106 n.261G>A non_coding_transcript_exon_variant 0.76
rrs 1472108 n.263C>T non_coding_transcript_exon_variant 0.75
rrs 1472137 n.292G>A non_coding_transcript_exon_variant 0.69
rrs 1472150 n.305T>A non_coding_transcript_exon_variant 0.8
rrs 1472172 n.327T>C non_coding_transcript_exon_variant 0.78
rrs 1472225 n.380C>A non_coding_transcript_exon_variant 0.82
rrs 1472251 n.406G>A non_coding_transcript_exon_variant 0.82
rrs 1472286 n.441C>G non_coding_transcript_exon_variant 0.67
rrs 1472289 n.444T>G non_coding_transcript_exon_variant 0.67
rrs 1472290 n.445C>G non_coding_transcript_exon_variant 0.67
rrs 1472297 n.453_465delGTCCGGGTTCTCT non_coding_transcript_exon_variant 0.67
rrs 1472315 n.470T>G non_coding_transcript_exon_variant 0.63
rrs 1472324 n.479G>C non_coding_transcript_exon_variant 0.58
rrs 1472325 n.480G>C non_coding_transcript_exon_variant 0.6
rrs 1472328 n.483G>C non_coding_transcript_exon_variant 0.6
rrs 1472344 n.499C>T non_coding_transcript_exon_variant 0.58
rrs 1472382 n.537G>A non_coding_transcript_exon_variant 0.67
rrs 1472414 n.569C>T non_coding_transcript_exon_variant 0.64
rrs 1472422 n.577T>C non_coding_transcript_exon_variant 0.62
rrs 1472435 n.590T>C non_coding_transcript_exon_variant 0.67
rrs 1472439 n.594C>T non_coding_transcript_exon_variant 0.68
rrs 1472446 n.601T>A non_coding_transcript_exon_variant 0.68
rrs 1472448 n.603T>C non_coding_transcript_exon_variant 0.68
rrs 1472449 n.604C>A non_coding_transcript_exon_variant 0.71
rrs 1472450 n.605A>G non_coding_transcript_exon_variant 0.75
rrs 1472452 n.607G>A non_coding_transcript_exon_variant 0.75
rrs 1472456 n.611T>C non_coding_transcript_exon_variant 0.75
rrs 1472462 n.617T>C non_coding_transcript_exon_variant 0.79
rrs 1472463 n.618G>T non_coding_transcript_exon_variant 0.79
rrs 1472464 n.619A>G non_coding_transcript_exon_variant 0.79
rrs 1472467 n.622G>T non_coding_transcript_exon_variant 0.75
rrs 1472471 n.626G>A non_coding_transcript_exon_variant 0.79
rrs 1472489 n.644A>T non_coding_transcript_exon_variant 0.76
rrs 1472530 n.685G>A non_coding_transcript_exon_variant 0.8
rrs 1472599 n.754G>A non_coding_transcript_exon_variant 0.74
rrs 1472612 n.767G>T non_coding_transcript_exon_variant 0.79
rrs 1472660 n.815T>C non_coding_transcript_exon_variant 0.87
rrs 1472661 n.816A>G non_coding_transcript_exon_variant 0.83
rrs 1472672 n.830delT non_coding_transcript_exon_variant 0.89
rrs 1472682 n.837T>A non_coding_transcript_exon_variant 0.87
rrs 1472683 n.838T>C non_coding_transcript_exon_variant 0.87
rrs 1472686 n.841G>A non_coding_transcript_exon_variant 0.88
rrs 1472713 n.868T>C non_coding_transcript_exon_variant 0.81
rrs 1472714 n.869A>G non_coding_transcript_exon_variant 0.85
rrs 1472825 n.980G>A non_coding_transcript_exon_variant 0.13
rrs 1472828 n.983T>C non_coding_transcript_exon_variant 0.14
rrs 1472836 n.991G>A non_coding_transcript_exon_variant 0.53
rrs 1472837 n.992C>T non_coding_transcript_exon_variant 0.35
rrs 1472840 n.995A>C non_coding_transcript_exon_variant 0.5
rrs 1472851 n.1006A>G non_coding_transcript_exon_variant 0.13
rrs 1472856 n.1012_1015delAGGC non_coding_transcript_exon_variant 0.29
rrs 1472873 n.1028C>T non_coding_transcript_exon_variant 0.44
rrs 1472875 n.1030T>G non_coding_transcript_exon_variant 0.44
rrs 1472878 n.1033G>A non_coding_transcript_exon_variant 0.31
rrs 1472880 n.1035G>A non_coding_transcript_exon_variant 0.52
rrs 1472951 n.1106T>C non_coding_transcript_exon_variant 0.67
rrs 1472953 n.1108G>A non_coding_transcript_exon_variant 0.67
rrs 1472957 n.1112C>T non_coding_transcript_exon_variant 0.67
rrs 1472973 n.1128A>T non_coding_transcript_exon_variant 0.75
rrs 1472989 n.1144G>A non_coding_transcript_exon_variant 0.77
rrs 1473026 n.1181T>C non_coding_transcript_exon_variant 0.82
rrs 1473082 n.1237G>A non_coding_transcript_exon_variant 0.7
rrs 1473088 n.1243A>G non_coding_transcript_exon_variant 0.72
rrs 1473099 n.1254T>G non_coding_transcript_exon_variant 0.67
rrs 1473100 n.1255G>A non_coding_transcript_exon_variant 0.82
rrs 1473104 n.1259C>T non_coding_transcript_exon_variant 0.8
rrs 1473110 n.1265T>G non_coding_transcript_exon_variant 0.83
rrs 1473111 n.1266A>G non_coding_transcript_exon_variant 0.83
rrs 1473121 n.1276T>C non_coding_transcript_exon_variant 0.83
rrs 1473123 n.1278A>T non_coding_transcript_exon_variant 0.7
rrs 1473129 n.1284C>T non_coding_transcript_exon_variant 0.69
rrs 1473145 n.1300C>T non_coding_transcript_exon_variant 0.16
rrs 1473166 n.1321G>A non_coding_transcript_exon_variant 0.17
rrs 1473201 n.1356A>T non_coding_transcript_exon_variant 0.14
rrs 1473202 n.1357C>T non_coding_transcript_exon_variant 0.14
rrs 1473252 n.1407T>C non_coding_transcript_exon_variant 0.17
rrs 1473276 n.1431A>G non_coding_transcript_exon_variant 0.84
rrs 1473282 n.1437C>T non_coding_transcript_exon_variant 0.7
rrs 1473283 n.1438T>C non_coding_transcript_exon_variant 0.14
rrs 1473290 n.1445C>T non_coding_transcript_exon_variant 0.18
rrs 1473301 n.1456T>C non_coding_transcript_exon_variant 0.74
rrl 1473391 n.-267C>T upstream_gene_variant 0.23
rrl 1473679 n.22T>C non_coding_transcript_exon_variant 0.17
rrl 1473696 n.39T>C non_coding_transcript_exon_variant 0.2
rrl 1473698 n.41G>A non_coding_transcript_exon_variant 0.2
rrl 1473699 n.42A>G non_coding_transcript_exon_variant 0.31
rrl 1473717 n.60G>A non_coding_transcript_exon_variant 0.46
rrl 1473731 n.74T>A non_coding_transcript_exon_variant 0.55
rrl 1473756 n.99G>T non_coding_transcript_exon_variant 0.63
rrl 1473757 n.100T>G non_coding_transcript_exon_variant 0.65
rrl 1473758 n.101G>T non_coding_transcript_exon_variant 0.68
rrl 1473770 n.113T>G non_coding_transcript_exon_variant 0.76
rrl 1473806 n.149C>T non_coding_transcript_exon_variant 0.81
rrl 1473814 n.157A>G non_coding_transcript_exon_variant 0.81
rrl 1473815 n.158T>C non_coding_transcript_exon_variant 0.81
rrl 1473830 n.173T>C non_coding_transcript_exon_variant 0.82
rrl 1473832 n.175C>T non_coding_transcript_exon_variant 0.84
rrl 1473833 n.176_177insT non_coding_transcript_exon_variant 0.86
rrl 1473844 n.187C>T non_coding_transcript_exon_variant 0.84
rrl 1473870 n.213G>A non_coding_transcript_exon_variant 0.81
rrl 1473871 n.214T>C non_coding_transcript_exon_variant 0.8
rrl 1473876 n.219G>A non_coding_transcript_exon_variant 0.76
rrl 1473887 n.230T>C non_coding_transcript_exon_variant 0.73
rrl 1473888 n.231T>C non_coding_transcript_exon_variant 0.73
rrl 1473898 n.241C>T non_coding_transcript_exon_variant 0.74
rrl 1473899 n.242A>G non_coding_transcript_exon_variant 0.74
rrl 1473916 n.259C>A non_coding_transcript_exon_variant 0.56
rrl 1473923 n.266C>G non_coding_transcript_exon_variant 0.56
rrl 1474116 n.459G>A non_coding_transcript_exon_variant 0.2
rrl 1474124 n.467G>C non_coding_transcript_exon_variant 0.31
rrl 1474135 n.478G>A non_coding_transcript_exon_variant 0.41
rrl 1474140 n.483C>T non_coding_transcript_exon_variant 0.41
rrl 1474142 n.485C>G non_coding_transcript_exon_variant 0.41
rrl 1474151 n.494C>T non_coding_transcript_exon_variant 0.42
rrl 1474153 n.496C>T non_coding_transcript_exon_variant 0.45
rrl 1474166 n.509G>A non_coding_transcript_exon_variant 0.45
rrl 1474174 n.517A>G non_coding_transcript_exon_variant 0.48
rrl 1474183 n.526T>C non_coding_transcript_exon_variant 0.43
rrl 1474184 n.527C>T non_coding_transcript_exon_variant 0.43
rrl 1474186 n.529A>G non_coding_transcript_exon_variant 0.43
rrl 1474201 n.544T>C non_coding_transcript_exon_variant 0.43
rrl 1474218 n.561T>A non_coding_transcript_exon_variant 0.55
rrl 1474249 n.592G>T non_coding_transcript_exon_variant 0.58
rrl 1474266 n.609T>C non_coding_transcript_exon_variant 0.5
rrl 1474269 n.612C>T non_coding_transcript_exon_variant 0.53
rrl 1474288 n.631C>T non_coding_transcript_exon_variant 0.42
rrl 1474289 n.633_644delTTTTCCTCTCCG non_coding_transcript_exon_variant 0.42
rrl 1474305 n.648G>C non_coding_transcript_exon_variant 0.38
rrl 1474348 n.691C>T non_coding_transcript_exon_variant 0.55
rrl 1474351 n.694G>T non_coding_transcript_exon_variant 0.57
rrl 1474353 n.696A>G non_coding_transcript_exon_variant 0.59
rrl 1474362 n.705A>G non_coding_transcript_exon_variant 0.62
rrl 1474387 n.730C>T non_coding_transcript_exon_variant 0.56
rrl 1474402 n.745T>C non_coding_transcript_exon_variant 0.53
rrl 1474414 n.757C>T non_coding_transcript_exon_variant 0.56
rrl 1474447 n.790G>A non_coding_transcript_exon_variant 0.57
rrl 1474450 n.793T>C non_coding_transcript_exon_variant 0.58
rrl 1474454 n.797G>A non_coding_transcript_exon_variant 0.65
rrl 1474488 n.831G>T non_coding_transcript_exon_variant 0.76
rrl 1474496 n.839C>A non_coding_transcript_exon_variant 0.76
rrl 1474497 n.840G>C non_coding_transcript_exon_variant 0.75
rrl 1474506 n.849C>G non_coding_transcript_exon_variant 0.78
rrl 1474507 n.850G>T non_coding_transcript_exon_variant 0.78
rrl 1474516 n.859C>A non_coding_transcript_exon_variant 0.82
rrl 1474537 n.880G>A non_coding_transcript_exon_variant 0.85
rrl 1474552 n.895C>T non_coding_transcript_exon_variant 0.8
rrl 1474626 n.969T>C non_coding_transcript_exon_variant 0.69
rrl 1474632 n.975G>T non_coding_transcript_exon_variant 0.64
rrl 1474636 n.979A>T non_coding_transcript_exon_variant 0.64
rrl 1474638 n.981C>A non_coding_transcript_exon_variant 0.6
rrl 1474639 n.982G>C non_coding_transcript_exon_variant 0.62
rrl 1474662 n.1005C>T non_coding_transcript_exon_variant 0.36
rrl 1474664 n.1007G>T non_coding_transcript_exon_variant 0.17
rrl 1474666 n.1009T>G non_coding_transcript_exon_variant 0.14
rrl 1474670 n.1013C>G non_coding_transcript_exon_variant 0.13
rrl 1474673 n.1016T>C non_coding_transcript_exon_variant 0.13
rrl 1474676 n.1019T>A non_coding_transcript_exon_variant 0.23
rrl 1474677 n.1020A>G non_coding_transcript_exon_variant 0.13
rrl 1474679 n.1022G>C non_coding_transcript_exon_variant 0.13
rrl 1474684 n.1027T>C non_coding_transcript_exon_variant 0.12
rrl 1474688 n.1031G>A non_coding_transcript_exon_variant 0.15
rrl 1474717 n.1060A>G non_coding_transcript_exon_variant 0.25
rrl 1474722 n.1065T>C non_coding_transcript_exon_variant 0.33
rrl 1474734 n.1077G>T non_coding_transcript_exon_variant 0.53
rrl 1474736 n.1079C>T non_coding_transcript_exon_variant 0.3
rrl 1474740 n.1083G>C non_coding_transcript_exon_variant 0.25
rrl 1474747 n.1090C>G non_coding_transcript_exon_variant 0.25
rrl 1474749 n.1092C>T non_coding_transcript_exon_variant 0.37
rrl 1474751 n.1094G>A non_coding_transcript_exon_variant 0.3
rrl 1474753 n.1097delC non_coding_transcript_exon_variant 0.5
rrl 1474760 n.1103A>G non_coding_transcript_exon_variant 0.6
rrl 1474777 n.1120T>G non_coding_transcript_exon_variant 0.15
rrl 1474779 n.1122G>A non_coding_transcript_exon_variant 0.21
rrl 1474780 n.1123C>T non_coding_transcript_exon_variant 0.14
rrl 1474782 n.1125G>A non_coding_transcript_exon_variant 0.58
rrl 1474783 n.1126G>A non_coding_transcript_exon_variant 0.14
rrl 1474790 n.1133C>T non_coding_transcript_exon_variant 0.58
rrl 1474794 n.1137C>T non_coding_transcript_exon_variant 0.76
rrl 1474803 n.1146G>A non_coding_transcript_exon_variant 0.59
rrl 1474812 n.1155G>A non_coding_transcript_exon_variant 0.61
rrl 1474823 n.1166C>G non_coding_transcript_exon_variant 0.79
rrl 1474824 n.1167A>G non_coding_transcript_exon_variant 0.66
rrl 1474830 n.1173A>G non_coding_transcript_exon_variant 0.68
rrl 1474903 n.1246T>C non_coding_transcript_exon_variant 0.59
rrl 1474904 n.1247G>C non_coding_transcript_exon_variant 0.62
rrl 1474913 n.1256T>C non_coding_transcript_exon_variant 0.61
rrl 1474932 n.1275C>T non_coding_transcript_exon_variant 0.45
rrl 1474938 n.1281G>A non_coding_transcript_exon_variant 0.43
rrl 1474946 n.1289C>T non_coding_transcript_exon_variant 0.36
rrl 1475033 n.1376G>C non_coding_transcript_exon_variant 0.12
rrl 1475060 n.1404delC non_coding_transcript_exon_variant 0.44
rrl 1475065 n.1408G>A non_coding_transcript_exon_variant 0.44
rrl 1475067 n.1410A>G non_coding_transcript_exon_variant 0.44
rrl 1475076 n.1419C>A non_coding_transcript_exon_variant 0.5
rrl 1475079 n.1422T>C non_coding_transcript_exon_variant 0.5
rrl 1475081 n.1424C>T non_coding_transcript_exon_variant 0.5
rrl 1475090 n.1433A>T non_coding_transcript_exon_variant 0.52
rrl 1475113 n.1456C>T non_coding_transcript_exon_variant 0.57
rrl 1475114 n.1457C>T non_coding_transcript_exon_variant 0.57
rrl 1475116 n.1459G>A non_coding_transcript_exon_variant 0.59
rrl 1475144 n.1487G>A non_coding_transcript_exon_variant 0.57
rrl 1475163 n.1506T>C non_coding_transcript_exon_variant 0.57
rrl 1475414 n.1757G>C non_coding_transcript_exon_variant 0.5
rrl 1475419 n.1762C>T non_coding_transcript_exon_variant 0.5
rrl 1475422 n.1765A>G non_coding_transcript_exon_variant 0.56
rrl 1475429 n.1772G>A non_coding_transcript_exon_variant 0.55
rrl 1475443 n.1786G>A non_coding_transcript_exon_variant 0.58
rrl 1475452 n.1795C>A non_coding_transcript_exon_variant 0.74
rrl 1475460 n.1803A>G non_coding_transcript_exon_variant 0.74
rrl 1475480 n.1823A>T non_coding_transcript_exon_variant 0.71
rrl 1475481 n.1824C>T non_coding_transcript_exon_variant 0.71
rrl 1475482 n.1825A>T non_coding_transcript_exon_variant 0.71
rrl 1475526 n.1869C>A non_coding_transcript_exon_variant 0.68
rrl 1475531 n.1874C>T non_coding_transcript_exon_variant 0.65
rrl 1475538 n.1881T>A non_coding_transcript_exon_variant 0.65
rrl 1475539 n.1882A>T non_coding_transcript_exon_variant 0.65
rrl 1475599 n.1942A>G non_coding_transcript_exon_variant 0.33
rrl 1475699 n.2042C>T non_coding_transcript_exon_variant 0.84
rrl 1475753 n.2096C>G non_coding_transcript_exon_variant 0.82
rrl 1475764 n.2107A>G non_coding_transcript_exon_variant 0.81
rrl 1475765 n.2108A>G non_coding_transcript_exon_variant 0.83
rrl 1475767 n.2110G>A non_coding_transcript_exon_variant 0.72
rrl 1475769 n.2112T>C non_coding_transcript_exon_variant 0.84
rrl 1475775 n.2118G>T non_coding_transcript_exon_variant 0.84
rrl 1475884 n.2227A>G non_coding_transcript_exon_variant 0.69
rrl 1475896 n.2239A>G non_coding_transcript_exon_variant 0.64
rrl 1475906 n.2249C>T non_coding_transcript_exon_variant 0.16
rrl 1475916 n.2259C>T non_coding_transcript_exon_variant 0.83
rrl 1475943 n.2286G>A non_coding_transcript_exon_variant 0.16
rrl 1475952 n.2295A>G non_coding_transcript_exon_variant 0.15
rrl 1475977 n.2320A>G non_coding_transcript_exon_variant 0.83
rrl 1475988 n.2331A>G non_coding_transcript_exon_variant 0.82
rrl 1475997 n.2340A>T non_coding_transcript_exon_variant 0.81
rrl 1476030 n.2373A>G non_coding_transcript_exon_variant 0.83
rrl 1476032 n.2375C>G non_coding_transcript_exon_variant 0.83
rrl 1476033 n.2376T>G non_coding_transcript_exon_variant 0.83
rrl 1476034 n.2377C>T non_coding_transcript_exon_variant 0.85
rrl 1476045 n.2388G>A non_coding_transcript_exon_variant 0.83
rrl 1476046 n.2389G>T non_coding_transcript_exon_variant 0.83
rrl 1476047 n.2390G>C non_coding_transcript_exon_variant 0.83
rrl 1476049 n.2392C>T non_coding_transcript_exon_variant 0.86
rrl 1476080 n.2423T>A non_coding_transcript_exon_variant 0.87
rrl 1476086 n.2429G>A non_coding_transcript_exon_variant 0.88
rrl 1476088 n.2431A>C non_coding_transcript_exon_variant 0.84
rrl 1476099 n.2442A>G non_coding_transcript_exon_variant 0.84
rrl 1476103 n.2446C>A non_coding_transcript_exon_variant 0.8
rrl 1476105 n.2450delA non_coding_transcript_exon_variant 0.81
rrl 1476110 n.2453G>T non_coding_transcript_exon_variant 0.8
rrl 1476115 n.2458T>C non_coding_transcript_exon_variant 0.83
rrl 1476131 n.2474C>T non_coding_transcript_exon_variant 0.87
rrl 1476160 n.2503T>C non_coding_transcript_exon_variant 0.77
rrl 1476194 n.2537A>G non_coding_transcript_exon_variant 0.81
rrl 1476200 n.2543A>T non_coding_transcript_exon_variant 0.8
rrl 1476201 n.2544C>T non_coding_transcript_exon_variant 0.79
rrl 1476214 n.2557G>T non_coding_transcript_exon_variant 0.81
rrl 1476221 n.2564T>C non_coding_transcript_exon_variant 0.75
rrl 1476224 n.2567A>G non_coding_transcript_exon_variant 0.8
rrl 1476245 n.2588C>T non_coding_transcript_exon_variant 0.82
rrl 1476252 n.2595T>G non_coding_transcript_exon_variant 0.86
rrl 1476256 n.2599A>G non_coding_transcript_exon_variant 0.82
rrl 1476260 n.2603A>G non_coding_transcript_exon_variant 0.9
rrl 1476281 n.2624T>C non_coding_transcript_exon_variant 0.85
rrl 1476297 n.2640C>G non_coding_transcript_exon_variant 0.92
rrl 1476298 n.2641C>G non_coding_transcript_exon_variant 0.9
rrl 1476300 n.2643G>A non_coding_transcript_exon_variant 0.89
rrl 1476309 n.2652G>C non_coding_transcript_exon_variant 0.9
rrl 1476311 n.2654G>C non_coding_transcript_exon_variant 0.15
rrl 1476428 n.2771C>T non_coding_transcript_exon_variant 0.82
rrl 1476524 n.2867C>T non_coding_transcript_exon_variant 0.82
rrl 1476539 n.2882A>G non_coding_transcript_exon_variant 0.76
rrl 1476540 n.2883C>G non_coding_transcript_exon_variant 0.79
rrl 1476584 n.2927C>T non_coding_transcript_exon_variant 0.79
rrl 1476585 n.2928A>G non_coding_transcript_exon_variant 0.76
rrl 1476594 n.2937C>T non_coding_transcript_exon_variant 0.79
rrl 1476603 n.2946G>A non_coding_transcript_exon_variant 0.76
rrl 1476614 n.2957A>T non_coding_transcript_exon_variant 0.74
rrl 1476619 n.2962C>T non_coding_transcript_exon_variant 0.74
rrl 1476628 n.2971T>A non_coding_transcript_exon_variant 0.64
rrl 1476629 n.2972C>A non_coding_transcript_exon_variant 0.67
rrl 1476630 n.2973A>G non_coding_transcript_exon_variant 0.68
rrl 1476661 n.3004A>G non_coding_transcript_exon_variant 0.52
rrl 1476665 n.3008T>G non_coding_transcript_exon_variant 0.5
rrl 1476666 n.3009C>T non_coding_transcript_exon_variant 0.48
rrl 1476675 n.3018C>G non_coding_transcript_exon_variant 0.48
rrl 1476689 n.3032A>C non_coding_transcript_exon_variant 0.15
rrl 1476728 n.3071T>C non_coding_transcript_exon_variant 1.0
inhA 1673571 c.-631C>A upstream_gene_variant 0.18
rpsA 1833685 c.144G>C synonymous_variant 0.12
rpsA 1833694 c.153G>T synonymous_variant 0.14
rpsA 1833697 c.156C>G synonymous_variant 0.14
rpsA 1833709 c.168C>T synonymous_variant 0.15
rpsA 1833727 c.186G>C synonymous_variant 0.2
rpsA 1833733 c.192C>T synonymous_variant 0.2
rpsA 1833734 p.Ala65Ser missense_variant 0.2
rpsA 1833739 c.198C>T synonymous_variant 0.22
rpsA 1833742 c.201A>G synonymous_variant 0.22
rpsA 1833745 c.204G>C synonymous_variant 0.25
rpsA 1833772 c.231C>T synonymous_variant 0.36
rpsA 1833781 c.240T>C synonymous_variant 0.3
rpsA 1833787 c.246C>G synonymous_variant 0.3
rpsA 1833790 c.249T>A synonymous_variant 0.3
rpsA 1833793 c.252C>T synonymous_variant 0.27
rpsA 1833795 p.Glu85Ala missense_variant 0.27
rpsA 1833802 c.261A>G synonymous_variant 0.23
rpsA 1833805 c.264C>T synonymous_variant 0.23
rpsA 1833808 c.267G>C synonymous_variant 0.23
rpsA 1833811 c.270G>C synonymous_variant 0.33
rpsA 1833832 c.291G>A synonymous_variant 0.39
rpsA 1833835 c.294C>T synonymous_variant 0.28
rpsA 1833838 c.297G>A synonymous_variant 0.28
rpsA 1833841 c.300C>G synonymous_variant 0.32
rpsA 1833847 c.306C>G synonymous_variant 0.26
rpsA 1833850 c.309C>G synonymous_variant 0.26
rpsA 1833856 c.315A>G synonymous_variant 0.33
rpsA 1833862 c.321G>T synonymous_variant 0.31
rpsA 1833894 p.Ala118Glu missense_variant 0.33
rpsA 1833928 c.387G>C synonymous_variant 0.32
rpsA 1833949 c.408T>C synonymous_variant 0.35
rpsA 1833955 c.414G>C synonymous_variant 0.36
rpsA 1833961 c.420C>T synonymous_variant 0.25
rpsA 1833970 c.429G>T synonymous_variant 0.29
rpsA 1833973 c.432G>T synonymous_variant 0.24
rpsA 1833976 c.435C>T synonymous_variant 0.29
rpsA 1833979 c.438T>C synonymous_variant 0.33
rpsA 1833985 c.444G>C synonymous_variant 0.23
rpsA 1833991 c.450C>T synonymous_variant 0.25
rpsA 1833997 c.456G>C synonymous_variant 0.33
rpsA 1834000 c.459G>C synonymous_variant 0.33
rpsA 1834003 c.462G>A synonymous_variant 0.25
rpsA 1834009 c.468C>T synonymous_variant 0.35
rpsA 1834012 c.471G>C synonymous_variant 0.4
rpsA 1834015 c.474G>C synonymous_variant 0.4
rpsA 1834024 c.483G>C synonymous_variant 0.33
rpsA 1834030 c.489C>G synonymous_variant 0.35
rpsA 1834034 p.Ile165Val missense_variant 0.38
rpsA 1834069 c.528G>C synonymous_variant 0.19
rpsA 1834093 c.552G>C synonymous_variant 0.14
rpsA 1834213 c.672G>A synonymous_variant 0.13
rpsA 1834219 c.678C>G synonymous_variant 0.13
rpsA 1834222 c.681T>C synonymous_variant 0.13
rpsA 1834225 c.684C>G synonymous_variant 0.13
rpsA 1834231 c.690T>C synonymous_variant 0.13
rpsA 1834234 c.693G>A synonymous_variant 0.14
rpsA 1834246 c.705G>T synonymous_variant 0.14
rpsA 1834249 c.708T>C synonymous_variant 0.21
rpsA 1834261 c.720A>G synonymous_variant 0.19
rpsA 1834264 c.723G>T synonymous_variant 0.14
rpsA 1834279 c.738C>T synonymous_variant 0.13
rpsA 1834294 c.753G>T synonymous_variant 0.15
rpsA 1834298 p.Gln253Glu missense_variant 0.15
rpsA 1834303 c.762T>C synonymous_variant 0.2
rpsA 1834306 c.765T>C synonymous_variant 0.22
rpsA 1834307 p.Asp256Thr missense_variant 0.22
rpsA 1834327 c.786G>T synonymous_variant 0.25
rpsA 1834340 p.Met267Leu missense_variant 0.22
rpsA 1834378 c.837T>G synonymous_variant 0.2
rpsA 1834447 c.906C>G synonymous_variant 0.17
rpsA 1834451 c.910T>C synonymous_variant 0.15
rpsA 1834474 c.933C>G synonymous_variant 0.12
rpsA 1834633 c.1092A>G synonymous_variant 0.2
rpsA 1834639 c.1098T>C synonymous_variant 0.2
rpsA 1834645 c.1104C>T synonymous_variant 0.2
rpsA 1834650 p.Thr370Asn missense_variant 0.22
rpsA 1834653 p.Glu371Ala missense_variant 0.22
rpsA 1834663 c.1122C>T synonymous_variant 0.22
rpsA 1834667 p.Ala376Ser missense_variant 0.22
rpsA 1834688 c.1147_1149delAGTinsTCG synonymous_variant 0.25
rpsA 1834733 p.Ala398Pro missense_variant 0.18
rpsA 1834738 c.1197A>G synonymous_variant 0.18
rpsA 1834753 c.1212T>C synonymous_variant 0.17
rpsA 1834759 c.1218A>C synonymous_variant 0.14
rpsA 1834765 p.Glu408Asp missense_variant 0.14
rpsA 1834859 p.Ala440Thr missense_variant 1.0
tlyA 1917972 c.33A>G synonymous_variant 1.0
ndh 2103173 c.-132delG upstream_gene_variant 1.0
katG 2154419 p.Val565Met missense_variant 0.33
katG 2154724 p.Arg463Leu missense_variant 1.0
katG 2155503 c.609C>T synonymous_variant 1.0
katG 2156025 c.87C>A synonymous_variant 1.0
katG 2156465 c.-354C>T upstream_gene_variant 1.0
PPE35 2167926 p.Leu896Ser missense_variant 1.0
PPE35 2168011 p.Ser868Arg missense_variant 1.0
PPE35 2168814 c.1798dupA frameshift_variant 1.0
Rv1979c 2222308 p.Asp286Gly missense_variant 1.0
Rv1979c 2223293 c.-129A>G upstream_gene_variant 1.0
kasA 2518132 c.18C>T synonymous_variant 1.0
eis 2714416 p.Glu306Ala missense_variant 0.25
ahpC 2726579 c.387T>C synonymous_variant 0.18
ahpC 2726582 c.390G>T synonymous_variant 0.18
ahpC 2726585 c.393C>A synonymous_variant 0.15
ahpC 2726593 p.Val134Ala missense_variant 0.14
ahpC 2726597 c.405C>G synonymous_variant 0.15
ahpC 2726600 c.408T>C synonymous_variant 0.15
thyA 3074353 p.Ala40Val missense_variant 0.2
ald 3086728 c.-92C>T upstream_gene_variant 1.0
ald 3086788 c.-32T>C upstream_gene_variant 1.0
ald 3087084 c.266delA frameshift_variant 1.0
Rv3083 3448783 p.Val94Ile missense_variant 1.0
fprA 3473996 c.-11_-10insA upstream_gene_variant 1.0
fprA 3474427 p.Val141Ile missense_variant 1.0
fprA 3475159 p.Asn385Asp missense_variant 1.0
rpoA 3878196 p.Glu104Ala missense_variant 0.13
rpoA 3878199 c.309T>C synonymous_variant 0.13
rpoA 3878202 c.306G>C synonymous_variant 0.13
rpoA 3878205 c.303T>C synonymous_variant 0.14
rpoA 3878217 p.Leu97Val missense_variant 0.14
rpoA 3878630 c.-124delC upstream_gene_variant 1.0
clpC1 4038403 c.2302T>C synonymous_variant 1.0
clpC1 4038725 c.1980C>G synonymous_variant 0.22
clpC1 4038740 c.1965G>C synonymous_variant 0.25
clpC1 4038743 c.1962G>C synonymous_variant 0.29
clpC1 4038746 c.1959C>T synonymous_variant 0.29
clpC1 4038749 c.1956C>A synonymous_variant 0.25
clpC1 4038755 c.1950G>T synonymous_variant 0.25
clpC1 4038767 c.1938G>T synonymous_variant 0.22
clpC1 4038773 c.1932T>C synonymous_variant 0.22
clpC1 4038791 c.1914G>C synonymous_variant 0.27
clpC1 4038795 p.Ser637Thr missense_variant 0.27
clpC1 4038812 c.1893T>C synonymous_variant 0.43
clpC1 4038815 c.1890G>A synonymous_variant 0.47
clpC1 4038842 c.1863G>C synonymous_variant 0.44
clpC1 4038845 c.1858_1860delTCGinsAGC synonymous_variant 0.47
clpC1 4038860 c.1845G>C synonymous_variant 0.53
clpC1 4038878 c.1827A>G synonymous_variant 0.47
clpC1 4038884 c.1821C>T synonymous_variant 0.39
clpC1 4038890 c.1815G>A synonymous_variant 0.41
clpC1 4038896 c.1809C>A synonymous_variant 0.39
clpC1 4038905 c.1800A>G synonymous_variant 0.35
clpC1 4038911 c.1794G>T synonymous_variant 0.33
clpC1 4038914 c.1791G>C synonymous_variant 0.33
clpC1 4038917 c.1788C>T synonymous_variant 0.33
clpC1 4038923 c.1782A>G synonymous_variant 0.35
clpC1 4038926 c.1779G>C synonymous_variant 0.35
clpC1 4038932 c.1773G>T synonymous_variant 0.32
clpC1 4038941 c.1764G>C synonymous_variant 0.32
clpC1 4038953 c.1752A>G synonymous_variant 0.24
clpC1 4038956 c.1749T>C synonymous_variant 0.24
clpC1 4038965 c.1740T>C synonymous_variant 0.21
clpC1 4038971 c.1734T>C synonymous_variant 0.14
clpC1 4038974 c.1731T>G synonymous_variant 0.14
clpC1 4038977 c.1728G>T synonymous_variant 0.14
clpC1 4039070 c.1635G>C synonymous_variant 0.12
clpC1 4039286 c.1419T>G synonymous_variant 0.12
clpC1 4039289 c.1416T>C synonymous_variant 0.13
clpC1 4039295 c.1410A>G synonymous_variant 0.13
clpC1 4039322 c.1383T>C synonymous_variant 0.12
clpC1 4039328 c.1377A>T synonymous_variant 0.14
clpC1 4039331 c.1374C>T synonymous_variant 0.13
clpC1 4039334 c.1371G>C synonymous_variant 0.13
clpC1 4039337 c.1368A>C synonymous_variant 0.13
clpC1 4039382 c.1323C>G synonymous_variant 0.27
clpC1 4039391 c.1314T>G synonymous_variant 0.2
clpC1 4039394 c.1311G>C synonymous_variant 0.2
clpC1 4039397 c.1308A>G synonymous_variant 0.2
clpC1 4039406 c.1299G>C synonymous_variant 0.12
clpC1 4039412 c.1293T>G synonymous_variant 0.14
clpC1 4039415 p.Glu430Asp missense_variant 0.15
clpC1 4039424 p.Lys427Arg missense_variant 0.15
clpC1 4039427 p.Glu426Asp missense_variant 0.13
clpC1 4039430 c.1275T>C synonymous_variant 0.2
clpC1 4039442 c.1263A>C synonymous_variant 0.13
clpC1 4039448 c.1257A>G synonymous_variant 0.24
clpC1 4039454 c.1251A>G synonymous_variant 0.12
clpC1 4039463 c.1242C>G synonymous_variant 0.25
clpC1 4039466 c.1239T>C synonymous_variant 0.12
clpC1 4039469 c.1236T>C synonymous_variant 0.24
clpC1 4039472 c.1233G>C synonymous_variant 0.24
clpC1 4039481 c.1224T>C synonymous_variant 0.13
clpC1 4039499 c.1206G>C synonymous_variant 0.17
clpC1 4039517 c.1188C>G synonymous_variant 0.14
clpC1 4039526 c.1179G>C synonymous_variant 0.19
clpC1 4039553 c.1152C>G synonymous_variant 0.13
clpC1 4039559 c.1146C>G synonymous_variant 0.13
clpC1 4039562 c.1143C>A synonymous_variant 0.14
clpC1 4039568 p.Met379Ile missense_variant 0.12
clpC1 4039571 c.1134G>T synonymous_variant 0.13
clpC1 4039574 p.Ala377Gly missense_variant 0.13
clpC1 4039577 c.1128T>C synonymous_variant 0.14
clpC1 4039580 c.1125C>G synonymous_variant 0.14
clpC1 4039586 c.1119G>C synonymous_variant 0.15
clpC1 4039589 c.1116G>C synonymous_variant 0.18
clpC1 4039592 c.1113G>T synonymous_variant 0.15
clpC1 4039601 c.1104G>T synonymous_variant 0.15
clpC1 4039610 c.1095G>C synonymous_variant 0.12
clpC1 4039616 c.1089G>T synonymous_variant 0.12
clpC1 4039619 c.1086G>T synonymous_variant 0.12
clpC1 4039724 c.981A>G synonymous_variant 0.18
clpC1 4039742 c.963C>T synonymous_variant 0.25
clpC1 4039748 c.957G>C synonymous_variant 0.22
clpC1 4039751 c.954A>G synonymous_variant 0.26
clpC1 4039757 c.948A>G synonymous_variant 0.28
clpC1 4039769 c.936C>T synonymous_variant 0.25
clpC1 4039775 c.930G>C synonymous_variant 0.24
clpC1 4039778 c.927A>G synonymous_variant 0.29
clpC1 4039781 c.924G>C synonymous_variant 0.29
clpC1 4039787 c.918G>C synonymous_variant 0.22
clpC1 4039793 c.912C>G synonymous_variant 0.19
clpC1 4039802 c.903G>T synonymous_variant 0.21
clpC1 4039814 c.891C>G synonymous_variant 0.21
clpC1 4039817 c.888A>C synonymous_variant 0.21
clpC1 4039820 c.885T>G synonymous_variant 0.21
clpC1 4039826 c.879C>G synonymous_variant 0.19
clpC1 4039829 c.874_876delTTGinsCTC synonymous_variant 0.23
clpC1 4039850 c.855T>C synonymous_variant 0.28
clpC1 4039865 c.840T>C synonymous_variant 0.24
clpC1 4039889 c.816G>T synonymous_variant 0.18
clpC1 4039898 c.807C>G synonymous_variant 0.21
clpC1 4039904 c.801A>G synonymous_variant 0.21
clpC1 4039931 c.774T>C synonymous_variant 0.19
clpC1 4039934 c.771G>C synonymous_variant 0.18
clpC1 4039940 c.765G>C synonymous_variant 0.22
clpC1 4039946 c.759A>G synonymous_variant 0.15
clpC1 4039949 c.756G>C synonymous_variant 0.26
clpC1 4039952 c.753T>C synonymous_variant 0.22
clpC1 4039955 c.750G>C synonymous_variant 0.17
clpC1 4040033 c.672G>C synonymous_variant 0.12
clpC1 4040324 c.381G>C synonymous_variant 0.17
clpC1 4040354 c.351A>G synonymous_variant 0.19
clpC1 4040375 c.330G>C synonymous_variant 0.14
clpC1 4040380 c.325T>C synonymous_variant 0.19
clpC1 4040381 c.324T>C synonymous_variant 0.19
clpC1 4040387 c.318A>G synonymous_variant 0.18
clpC1 4040408 c.297C>A synonymous_variant 0.21
clpC1 4040411 c.294T>C synonymous_variant 0.28
clpC1 4040426 c.279T>C synonymous_variant 0.28
clpC1 4040431 c.274T>C synonymous_variant 0.26
clpC1 4040432 c.273C>T synonymous_variant 0.21
clpC1 4040447 c.258G>A synonymous_variant 0.24
clpC1 4040450 c.255A>G synonymous_variant 0.29
clpC1 4040459 c.246C>G synonymous_variant 0.2
clpC1 4040462 c.243C>A synonymous_variant 0.2
clpC1 4040465 c.240T>C synonymous_variant 0.24
clpC1 4040468 c.237G>C synonymous_variant 0.19
clpC1 4040471 c.234T>C synonymous_variant 0.2
clpC1 4040477 c.228G>T synonymous_variant 0.2
clpC1 4040480 c.225T>C synonymous_variant 0.21
clpC1 4040486 c.219G>T synonymous_variant 0.2
clpC1 4040522 c.183T>C synonymous_variant 0.23
clpC1 4040528 c.177G>C synonymous_variant 0.23
clpC1 4040531 c.174T>A synonymous_variant 0.25
clpC1 4040534 c.171A>G synonymous_variant 0.23
clpC1 4040537 c.168G>C synonymous_variant 0.24
clpC1 4040540 c.165G>C synonymous_variant 0.25
clpC1 4040546 c.159G>T synonymous_variant 0.25
clpC1 4040561 c.144A>G synonymous_variant 0.14
embC 4240671 p.Thr270Ile missense_variant 1.0
embC 4241384 p.Pro508Thr missense_variant 0.92
embA 4242643 c.-590C>T upstream_gene_variant 1.0
embA 4242970 c.-263C>T upstream_gene_variant 1.0
embA 4244220 c.988C>T synonymous_variant 0.92
embB 4246551 p.Asn13Ser missense_variant 1.0
embB 4246864 c.351C>T synonymous_variant 1.0
embB 4247646 p.Glu378Ala missense_variant 1.0
embB 4249640 c.3127T>C synonymous_variant 1.0
aftB 4267858 p.Ile327Val missense_variant 1.0
aftB 4269351 c.-515C>T upstream_gene_variant 1.0
ubiA 4269387 p.Glu149Asp missense_variant 1.0
aftB 4269606 c.-770T>C upstream_gene_variant 1.0
whiB6 4338595 c.-75delG upstream_gene_variant 1.0
gid 4407588 c.615A>G synonymous_variant 1.0