Rv0667 - c.2145G>C
Note: the variant has been searched for in a non-representative convenience
dataset of samples from the ENA. This sampleset may contain overrepresentation
in certain categories such as geographic source, drug resistance type and
lineage. Interpretation of variant frequencies should be performed cautiously
with this in mind.
Drug resistance types
13 Sensitive
6 RR-TB
24 HR-TB
12 MDR-TB
2 Pre-XDR-TB
0 XDR-TB
23 Other
lineage Counts
| lineage | Count |
|---|---|
| La3;lineage4.9 | 8 |
| La1.7;lineage4.9 | 5 |
| lineage4.9;lineage7 | 3 |
| lineage2.2.1 | 10 |
| lineage2.1;lineage4.9;lineage7 | 1 |
| lineage4.9 | 20 |
| lineage2.2.2 | 1 |
| lineage2.2.1;lineage4.5 | 1 |
| La1.3 | 1 |
| lineage4.8.1 | 2 |
| lineage2.2.1;lineage4.9 | 1 |
| M.canetti;lineage4.2;lineage4.6.4;lineage4.8.1;lineage4.9;lineage6.2.3 | 1 |
| M.canetti;lineage4.2;lineage4.9 | 1 |
| M.canetti;lineage4.9;lineage9 | 1 |
| La3;lineage4 | 1 |
| La2;lineage2.2 | 1 |
| lineage2.2;lineage4.9 | 1 |
| La2;lineage4.9 | 1 |
| lineage4.3.2.1 | 2 |
| 1 | |
| lineage4.2.2.2 | 1 |
| La1.7;M.canetti;lineage4.9 | 2 |
| M.canetti;lineage4.9 | 3 |
| lineage4.2;lineage4.9 | 1 |
| lineage2.1;lineage4.9 | 1 |
| lineage4.3.4 | 1 |
| lineage1.2.2.2 | 1 |
| lineage4.3.3 | 1 |
| lineage4.4.1.1.1 | 2 |
| lineage4.9;lineage6.3 | 1 |
| lineage4.1.1.3 | 1 |
| lineage2.2.1.1 | 1 |
| lineage1.1.1.1 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 80 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | ERR3283057 | Sensitive | La3;lineage4.9 | None | ERR176560 | HR-TB | La1.7;lineage4.9 | None | ERR3283025 | MDR-TB | La1.7;lineage4.9 | None | SRR3675539 | HR-TB | lineage4.9;lineage7 | None | SRR1140724 | Other | lineage2.2.1 | None | SRR3675555 | HR-TB | lineage2.1;lineage4.9;lineage7 | None | SRR1049675 | HR-TB | lineage2.2.1 | None | ERR9119669 | HR-TB | lineage4.9 | None | SRR12708370 | Pre-XDR-TB | lineage2.2.2 | None | ERR4811035 | Pre-XDR-TB | lineage2.2.1;lineage4.5 | None | SRR11342660 | MDR-TB | lineage2.2.1 | None | ERR3797064 | Other | La3;lineage4.9 | None | SRR29097066 | Sensitive | lineage4.9 | None | SRR21677886 | Sensitive | lineage4.9 | None | SRR6044835 | Other | lineage4.9 | None | ERR4769514 | Other | La1.3 | None | ERR212034 | HR-TB | La1.7;lineage4.9 | None | ERR3797087 | Sensitive | lineage4.9 | None | SRR11342693 | MDR-TB | lineage4.8.1 | None | SRR6045795 | Sensitive | lineage2.2.1 | None | ERR4815310 | Other | lineage2.2.1;lineage4.9 | None | ERR11252599 | Other | M.canetti;lineage4.2;lineage4.6.4;lineage4.8.1;lineage4.9;lineage6.2.3 | None | SRR3675571 | HR-TB | M.canetti;lineage4.2;lineage4.9 | None | ERR1063856 | HR-TB | M.canetti;lineage4.9;lineage9 | None | ERR3283028 | Other | La3;lineage4 | None | ERR1063839 | MDR-TB | La2;lineage2.2 | None | SRR1062919 | HR-TB | lineage2.2.1 | None | ERR3797048 | Other | La3;lineage4.9 | None | SRR3675231 | MDR-TB | lineage4.9;lineage7 | None | SRR12708418 | HR-TB | lineage2.2.1 | None | ERR4815550 | Other | lineage2.2;lineage4.9 | None | ERR1063857 | MDR-TB | La2;lineage4.9 | None | SRR12708407 | HR-TB | lineage4.3.2.1 | None | ERR3283014 | Sensitive | La3;lineage4.9 | None | SRR29050770 | Sensitive | lineage4.9 | None | ERR4810624 | HR-TB | lineage2.2.1 | None | ERR6358991 | HR-TB | None | ERR161037 | Other | lineage4.9 | None | SRR12708392 | Other | lineage2.2.1 | None | SRR11342687 | RR-TB | lineage4.2.2.2 | None | ERR4816466 | HR-TB | lineage4.9 | None | SRR6046382 | Sensitive | lineage2.2.1 | None | SRR3675456 | RR-TB | lineage4.9;lineage7 | None | SRR6045887 | Other | La1.7;M.canetti;lineage4.9 | None | SRR6045233 | Other | M.canetti;lineage4.9 | None | SRR12708396 | MDR-TB | lineage4.3.2.1 | None | ERR6866807 | Other | lineage4.9 | None | ERR4828872 | Sensitive | lineage4.2;lineage4.9 | None | ERR181744 | HR-TB | La3;lineage4.9 | None | SRR12708414 | HR-TB | lineage2.2.1 | None | ERR387051 | Other | lineage4.9 | None | SRR3675495 | Other | lineage2.1;lineage4.9 | None | ERR3797028 | HR-TB | M.canetti;lineage4.9 | None | SRR14801759 | HR-TB | La1.7;lineage4.9 | None | ERR4769521 | RR-TB | lineage4.9 | None | ERR212123 | Other | lineage4.9 | None | SRR6046783 | Other | La1.7;M.canetti;lineage4.9 | None | ERR161039 | Sensitive | lineage4.3.4 | None | ERR3797063 | Sensitive | La3;lineage4.9 | None | SRR3675582 | Other | lineage4.9 | None | ERR3283047 | Sensitive | La3;lineage4.9 | None | ERR3283011 | Other | La3;lineage4.9 | None | ERR1063846 | HR-TB | lineage4.9 | None | SRR12708411 | HR-TB | lineage1.2.2.2 | None | SRR3675280 | RR-TB | lineage4.9 | None | SRR6044942 | HR-TB | lineage4.9 | None | SRR11342649 | MDR-TB | lineage4.3.3 | None | SRR11342696 | MDR-TB | lineage4.4.1.1.1 | None | ERR212121 | HR-TB | lineage4.9;lineage6.3 | None | SRR11342647 | MDR-TB | lineage4.1.1.3 | None | SRR11342644 | MDR-TB | lineage4.4.1.1.1 | None | SRR11342662 | MDR-TB | lineage4.8.1 | None | ERR1023525 | HR-TB | La1.7;lineage4.9 | None | SRR6045399 | Other | M.canetti;lineage4.9 | None | ERR4769493 | Other | lineage4.9 | None | ERR3797062 | RR-TB | lineage4.9 | None | ERR176751 | Other | lineage4.9 | None | SRR6079962 | HR-TB | lineage2.2.1.1 | None | SRR14520103 | Sensitive | lineage1.1.1.1 | None | ERR3797065 | RR-TB | lineage4.9 | None |
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