lineage | Count |
---|---|
lineage4 | 15 |
lineage3.1.1 | 3 |
lineage4.9 | 83 |
La1.3 | 6 |
lineage4.9;La1.3 | 2 |
lineage2.2.1 | 26 |
lineage2.2.2 | 2 |
lineage4.5;lineage2.2.1 | 1 |
lineage4.1.2.1 | 2 |
lineage5.1.1 | 2 |
lineage4.6.5 | 2 |
lineage3 | 6 |
lineage6 | 2 |
lineage4.4.1.1 | 5 |
lineage4.8 | 19 |
lineage4.6.1.2 | 5 |
lineage4.4.1.1.1 | 2 |
lineage4.6.1 | 1 |
3 | |
lineage4.9;lineage2.2 | 1 |
lineage2.2 | 1 |
lineage2 | 1 |
lineage4.4.2 | 1 |
lineage4.6.2.2 | 1 |
lineage3.1 | 1 |
lineage1.1.2 | 1 |
lineage4.5 | 2 |
lineage4.1.1.3 | 3 |
lineage4.3.3 | 4 |
lineage4.1.1.3.1 | 3 |
lineage4.8.2 | 1 |
lineage4.2.2 | 1 |
lineage4.3.4.2.1 | 2 |
lineage1.1.3.1 | 2 |
lineage4.1.1.3.1;lineage3.1.2 | 1 |
lineage4.2.2.2 | 1 |
lineage4.2.1 | 1 |
lineage4.4.1.2 | 2 |
lineage4.1 | 1 |
lineage4.3.2.1 | 1 |
lineage4.8.1 | 1 |
La1.8.1 | 1 |
La1.7.X-unk4 | 1 |
spoligotype | Count |
---|---|
None | 222 |
ID | Drug resistance | Lineage | Country iso2 | ERR3797065 | MDR-TB | lineage4 | None | ERR4596944 | MDR-TB | lineage3.1.1 | None | ERR473334 | HR-TB | lineage4.9 | None | ERR473303 | Sensitive | lineage4.9 | None | ERR473323 | HR-TB | lineage4.9 | None | ERR4769408 | Other | La1.3 | None | ERR473367 | Sensitive | lineage4.9 | None | ERR4769417 | Pre-XDR-TB | lineage4.9 | None | ERR4769508 | RR-TB | lineage4.9 | None | ERR4769436 | Other | La1.3 | None | ERR4769444 | HR-TB | lineage4.9 | None | ERR4769502 | RR-TB | lineage4.9;La1.3 | None | ERR4769442 | HR-TB | lineage4 | None | ERR4769550 | Other | lineage4.9;La1.3 | None | ERR4769516 | Other | La1.3 | None | ERR4769514 | Other | La1.3 | None | ERR4769530 | RR-TB | lineage4.9 | None | ERR4769552 | Other | La1.3 | None | ERR4769555 | Other | La1.3 | None | ERR5987263 | MDR-TB | lineage2.2.1 | None | ERR4796472 | Pre-XDR-TB | lineage2.2.1 | None | ERR4809333 | Pre-XDR-TB | lineage2.2.2 | None | ERR4811035 | Pre-XDR-TB | lineage4.5;lineage2.2.1 | None | ERR4796351 | MDR-TB | lineage4.9 | None | ERR4808964 | RR-TB | lineage2.2.1 | None | ERR6359070 | Other | lineage4.9 | None | ERR6358951 | HR-TB | lineage4 | None | ERR6359066 | HR-TB | lineage4 | None | ERR736837 | Other | lineage4.9 | None | ERR6359069 | Other | lineage4.9 | None | ERR736831 | HR-TB | lineage4.9 | None | ERR6359074 | HR-TB | lineage4.9 | None | ERR6866125 | Sensitive | lineage4.1.2.1 | None | ERR751345 | Other | lineage5.1.1 | None | ERR7801176 | RR-TB | lineage4.6.5 | None | ERR7801175 | RR-TB | lineage4.6.5 | None | ERR9119733 | MDR-TB | lineage2.2.1 | None | ERR9285979 | RR-TB | lineage3.1.1 | None | ERR9786076 | Sensitive | lineage3 | None | ERR9787336 | Other | lineage6 | None | ERR9787033 | Sensitive | lineage6 | None | SRR10315558 | Sensitive | lineage2.2.1 | None | SRR10272570 | Sensitive | lineage4.4.1.1 | None | SRR10315751 | MDR-TB | lineage4.8 | None | SRR10315567 | Other | lineage2.2.1 | None | SRR1049674 | HR-TB | lineage2.2.1 | None | SRR1049581 | MDR-TB | lineage4.6.1.2 | None | SRR1049582 | MDR-TB | lineage4.6.1.2 | None | SRR1049675 | HR-TB | lineage2.2.1 | None | SRR11342634 | MDR-TB | lineage4.8 | None | SRR10869071 | MDR-TB | lineage2.2.1 | None | SRR1062880 | MDR-TB | lineage4.6.1.2 | None | SRR1062919 | HR-TB | lineage2.2.1 | None | SRR1140712 | MDR-TB | lineage4.6.1.2 | None | SRR11349145 | Pre-XDR-TB | lineage4.4.1.1.1 | None | SRR1173139 | Sensitive | lineage4.9 | None | SRR1140724 | HR-TB | lineage2.2.1 | None | SRR1172717 | Other | lineage4.9 | None | SRR1172807 | Sensitive | lineage4.9 | None | SRR1173421 | RR-TB | lineage4.9 | None | SRR1173361 | MDR-TB | lineage4.6.1 | None | SRR1173281 | RR-TB | lineage3 | None | SRR1173515 | HR-TB | lineage4.9 | None | SRR1173740 | Other | None | SRR1173833 | Other | lineage4.9 | None | SRR1175487 | Sensitive | lineage4.9 | None | SRR1180355 | Sensitive | lineage4.9 | None | SRR1175506 | Sensitive | lineage4.9 | None | SRR1175512 | Sensitive | lineage4.9 | None | SRR1180148 | Sensitive | lineage4.9 | None | SRR1180250 | Other | lineage4.9 | None | SRR1180312 | Sensitive | lineage4.9 | None | SRR1180319 | Sensitive | lineage4.9 | None | SRR1180375 | Sensitive | lineage4.9 | None | SRR1175513 | Other | lineage4.9 | None | SRR1180300 | Sensitive | lineage4.9 | None | SRR1180345 | Other | lineage4.9 | None | SRR1180399 | Sensitive | lineage4.9 | None | SRR1180391 | Sensitive | lineage4.9 | None | SRR1180444 | Sensitive | lineage4.9 | None | SRR1180406 | Sensitive | lineage4.9 | None | SRR1180413 | Sensitive | lineage4.9 | None | SRR1180440 | Other | lineage4.9 | None | SRR1180410 | Sensitive | lineage4.9;lineage2.2 | None | SRR1180420 | Sensitive | lineage4.9 | None | SRR1181214 | Other | lineage4.9 | None | SRR1180446 | Other | lineage4.9 | None | SRR1180977 | Sensitive | lineage4.9 | None | SRR1181237 | Sensitive | lineage2.2 | None | SRR1181390 | Sensitive | lineage2 | None | SRR1181283 | Sensitive | lineage4.9 | None | SRR1181325 | Sensitive | lineage4.9 | None | SRR1181368 | Other | lineage4.9 | None | SRR1181349 | Sensitive | lineage4.4.1.1.1 | None | SRR1181351 | Sensitive | lineage4.9 | None | SRR1184021 | Sensitive | lineage4.9 | None | SRR1181402 | Sensitive | lineage4.9 | None | SRR1183054 | Sensitive | lineage4.9 | None | SRR1184308 | Sensitive | lineage4.9 | None | SRR16156188 | HR-TB | lineage4.9 | None | SRR1196545 | HR-TB | lineage4.9 | None | SRR11972417 | MDR-TB | lineage2.2.1 | None | SRR15315797 | RR-TB | lineage2.2.1 | None | SRR16156804 | RR-TB | lineage4.9 | None | SRR1735596 | RR-TB | lineage4.9 | None | SRR16157123 | Other | lineage4.9 | None | SRR19303820 | RR-TB | lineage4.8 | None | SRR18002903 | Pre-XDR-TB | lineage2.2.1 | None | SRR18003023 | Other | lineage2.2.1 | None | SRR18002881 | Pre-XDR-TB | lineage2.2.1 | None | SRR18002933 | Other | lineage2.2.1 | None | SRR18002981 | Other | lineage2.2.1 | None | SRR18003030 | Pre-XDR-TB | lineage2.2.1 | None | ERR2228965 | Other | lineage4.8 | None | SRR20969542 | Other | lineage4.4.2 | None | ERR4815772 | Other | lineage4.4.1.1 | None | SRR3675230 | RR-TB | lineage3 | None | SRR21677886 | Sensitive | lineage4.9 | None | SRR22424765 | MDR-TB | lineage4 | None | SAMEA3501065 | RR-TB | lineage4.8 | None | ERR4815121 | HR-TB | lineage4.6.2.2 | None | ERR4815471 | Other | lineage4.9 | None | SAMEA3501073 | RR-TB | lineage4.8 | None | ERR216965 | HR-TB | lineage4.9 | None | ERR4816964 | Other | lineage4.9 | None | SAMEA3501015 | Other | lineage4.8 | None | ERR2229810 | Other | lineage4.8 | None | ERR2027290 | RR-TB | lineage3.1 | None | ERR4816397 | Other | lineage1.1.2 | None | ERR2229198 | MDR-TB | lineage4.8 | None | ERR2229233 | Sensitive | lineage4 | None | ERR4816548 | MDR-TB | lineage4.5 | None | ERR4816755 | Other | lineage4.1.1.3 | None | ERR4816610 | RR-TB | lineage4.3.3 | None | ERR2228810 | RR-TB | lineage4 | None | ERR4815816 | Other | lineage4.5 | gb | ERR2228838 | RR-TB | lineage4.8 | None | SAMN02380990 | MDR-TB | lineage4.6.1.2 | None | ERR2228890 | Other | lineage4 | None | SRR4033549 | HR-TB | lineage2.2.2 | None | ERR2228899 | RR-TB | lineage4.8 | None | ERR2228900 | RR-TB | lineage4.8 | None | ERR2228910 | Other | lineage4.8 | None | ERR2513382 | RR-TB | lineage4.1.1.3 | None | ERR4818646 | Sensitive | lineage4.1.2.1 | None | ERR4818710 | Sensitive | lineage4.9 | None | ERR4818851 | RR-TB | lineage4.4.1.1 | None | ERR2512423 | Other | lineage4.1.1.3 | None | ERR2515055 | Other | lineage3 | None | SRR5007167 | RR-TB | lineage4.1.1.3.1 | None | SAMEA3501063 | RR-TB | lineage4.8 | None | SRR5007161 | RR-TB | lineage4.1.1.3.1 | None | ERR4818536 | Other | lineage4.9 | None | SRR5007168 | RR-TB | lineage4.9 | None | SRR5007193 | RR-TB | lineage4.1.1.3.1 | None | SRR5007170 | RR-TB | lineage4.9 | None | SRR5007169 | RR-TB | lineage4.8.2 | None | ERR4820318 | Other | lineage4.2.2 | None | ERR4818624 | Other | lineage4.3.4.2.1 | None | SAMEA3501067 | RR-TB | lineage4.8 | None | SRR5153091 | HR-TB | lineage4.3.3 | None | ERR4819357 | Other | lineage4.9 | None | ERR4819864 | RR-TB | lineage1.1.3.1 | None | ERR4819462 | Other | lineage4 | None | ERR4820369 | Other | lineage2.2.1 | None | ERR2514430 | Other | lineage4.1.1.3.1;lineage3.1.2 | None | ERR4819772 | RR-TB | lineage1.1.3.1 | None | SAMEA3501052 | RR-TB | lineage4.8 | None | ERR1023509 | Other | None | ERR4819910 | Other | lineage4.9 | None | ERR4819933 | Other | lineage4.9 | None | SAMEA3501070 | RR-TB | lineage4.8 | None | ERR4820107 | RR-TB | None | ERR4821811 | RR-TB | lineage4.9 | None | ERR4821550 | Other | lineage2.2.1 | None | SAMEA3501046 | RR-TB | lineage4.8 | None | ERR4821119 | Other | lineage4.4.1.1 | None | ERR4821143 | RR-TB | lineage4.9 | None | SRR6045516 | Other | lineage3.1.1 | None | SRR6045957 | Other | lineage4.9 | None | SRR5818586 | RR-TB | lineage4.2.2.2 | None | SRR6044936 | Other | lineage4 | None | ERR4822261 | RR-TB | lineage2.2.1 | None | SRR6045664 | Other | lineage4.2.1 | None | SRR6046141 | Other | lineage4.9 | None | SRR6045832 | HR-TB | lineage4.9 | None | SRR6045267 | RR-TB | lineage4 | None | SRR6046839 | Other | lineage4.9 | None | SRR6046376 | Other | lineage3 | None | SRR6046385 | Other | lineage4.9 | None | ERR323037 | HR-TB | lineage4 | None | SRR6397815 | Other | lineage4.4.1.1 | None | SRR6397585 | Other | lineage4.4.1.2 | None | SRR6397733 | Other | lineage4.4.1.2 | None | SRR6789624 | MDR-TB | lineage4.1 | None | ERR485006 | HR-TB | lineage4.9 | None | SRR6982246 | Sensitive | lineage4 | None | SRR9970981 | RR-TB | lineage4.3.2.1 | None | ERR502517 | MDR-TB | lineage5.1.1 | None | SRR9971150 | RR-TB | lineage4.8.1 | None | SRR9971046 | MDR-TB | lineage4.8 | None | SRR9971114 | Other | lineage2.2.1 | None | SRR9971112 | Other | lineage2.2.1 | None | SRR9971113 | Other | lineage2.2.1 | None | ERR019855 | Other | lineage3 | None | ERR323044 | HR-TB | lineage4.3.4.2.1 | None | ERR323048 | Pre-XDR-TB | lineage4.9 | None | ERR1063855 | Other | lineage4 | None | ERR1023502 | MDR-TB | lineage2.2.1 | None | ERR10796565 | RR-TB | lineage4.9 | None | ERR10796564 | Other | lineage4.3.3 | None | ERR10796628 | Other | lineage4.3.3 | None | ERR10796596 | Other | lineage4.9 | None | ERR10796598 | RR-TB | lineage4.9 | None | ERR10796591 | MDR-TB | lineage4.9 | None | ERR108125 | Pre-XDR-TB | lineage4.9 | None | ERR10796629 | Other | lineage4 | None | ERR3283033 | Sensitive | lineage4.9 | None | ERR3439265 | Other | lineage4.9 | None | ERR3283046 | MDR-TB | lineage4.9 | None | ERR3439441 | Other | La1.8.1 | None | ERR3445487 | Other | La1.7.X-unk4 | None |
---|