TB-Profiler result

Run: SRR6046376
Summary

Run ID: SRR6046376

Sample name:

Date: 04-04-2023 12:15:47

Number of reads: 2619519

Percentage reads mapped: 61.25

Strain: lineage3

Drug-resistance: Other

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Drug resistance: This table reports drug-resistance associated mutations found in known resistance genes
Drug Resistance Supporting mutations
Lineage Table: The lineage is inferred by analysing lineage specific SNPs
Lineage Family Main Spoligotype RDs Frequency
lineage3 East-African-Indian CAS RD750 1.0
Drug resistance-Associated Mutations: This table reports mutations found in candidate resistance genes which have been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction Drugs
rrs 1472644 n.799C>T non_coding_transcript_exon_variant 0.73 streptomycin
rrs 1472733 n.888G>A non_coding_transcript_exon_variant 0.23 streptomycin
rrs 1473247 n.1402C>A non_coding_transcript_exon_variant 0.75 kanamycin, capreomycin, aminoglycosides, amikacin
rrs 1473329 n.1484G>T non_coding_transcript_exon_variant 0.7 kanamycin, capreomycin, aminoglycosides, amikacin
Non-Associated Mutations: This table reports mutations found in candidate resistance genes which have not been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction
gyrA 7362 p.Glu21Gln missense_variant 1.0
gyrA 7585 p.Ser95Thr missense_variant 0.99
gyrA 9304 p.Gly668Asp missense_variant 1.0
fgd1 491742 c.960T>C synonymous_variant 1.0
rpoB 759746 c.-61C>T upstream_gene_variant 1.0
rpoB 761973 p.His723Tyr missense_variant 0.15
rpoB 762002 c.2196C>G synonymous_variant 0.13
rpoB 762003 p.Asn733Gln missense_variant 0.13
rpoB 762011 c.2205G>C synonymous_variant 0.13
rpoB 762014 c.2208C>G synonymous_variant 0.13
rpoB 762015 p.Glu737Gln missense_variant 0.13
rpoB 762020 p.Glu738Asp missense_variant 0.13
rpoB 762024 p.Val740Thr missense_variant 0.13
rpoB 762030 p.Thr742Ser missense_variant 0.14
rpoB 762053 c.2247T>C synonymous_variant 0.23
rpoB 762062 c.2256T>C synonymous_variant 0.22
rpoB 762065 c.2259T>C synonymous_variant 0.23
rpoB 762074 c.2268C>G synonymous_variant 0.21
rpoB 762083 c.2277T>C synonymous_variant 0.19
rpoB 762084 p.Ala760Pro missense_variant 0.19
rpoB 762098 c.2292C>G synonymous_variant 0.21
rpoB 762101 c.2295C>G synonymous_variant 0.21
rpoB 762114 p.Ile770Val missense_variant 0.2
rpoB 762131 c.2325C>G synonymous_variant 0.2
rpoB 762140 c.2334G>C synonymous_variant 0.21
rpoB 762143 c.2337T>C synonymous_variant 0.2
rpoB 762149 c.2343G>C synonymous_variant 0.2
rpoB 762156 p.Val784Ile missense_variant 0.26
rpoB 762162 p.Ile786Val missense_variant 0.27
rpoB 762167 c.2361T>C synonymous_variant 0.33
rpoB 762179 c.2373C>T synonymous_variant 0.33
rpoB 762185 c.2379G>C synonymous_variant 0.27
rpoB 762189 p.Ile795Leu missense_variant 0.27
rpoB 762194 c.2388G>C synonymous_variant 0.27
rpoB 762209 c.2403C>G synonymous_variant 0.28
rpoB 762212 c.2406G>C synonymous_variant 0.28
rpoB 762245 c.2439G>C synonymous_variant 0.27
rpoB 762254 c.2448T>C synonymous_variant 0.25
rpoB 762278 c.2472C>T synonymous_variant 0.18
rpoB 762284 c.2478G>T synonymous_variant 0.15
rpoB 762287 c.2481C>A synonymous_variant 0.16
rpoB 762293 c.2487T>G synonymous_variant 0.16
rpoB 762297 p.Leu831Met missense_variant 0.16
rpoC 762434 c.-936T>G upstream_gene_variant 0.98
rpoB 762879 p.Met1025Leu missense_variant 0.11
rpoC 762896 c.-474G>C upstream_gene_variant 0.13
rpoC 762899 c.-471G>C upstream_gene_variant 0.14
rpoB 762905 p.Asp1033Glu missense_variant 0.13
rpoC 762917 c.-453C>G upstream_gene_variant 0.12
rpoC 762920 c.-450C>T upstream_gene_variant 0.12
rpoC 762923 c.-447C>G upstream_gene_variant 0.12
rpoC 762926 c.-444C>G upstream_gene_variant 0.12
rpoC 762929 c.-441G>T upstream_gene_variant 0.12
rpoC 762947 c.-423C>G upstream_gene_variant 0.12
rpoC 762959 c.-411G>C upstream_gene_variant 0.14
rpoC 762962 c.-408C>T upstream_gene_variant 0.16
rpoC 762983 c.-387C>T upstream_gene_variant 0.18
rpoC 762989 c.-381G>C upstream_gene_variant 0.16
rpoC 762995 c.-375G>T upstream_gene_variant 0.16
rpoC 763031 c.-339T>C upstream_gene_variant 1.0
rpoC 763504 c.135C>A synonymous_variant 0.12
rpoC 763507 c.138G>C synonymous_variant 0.11
rpoC 763528 c.159G>C synonymous_variant 0.13
rpoC 763534 c.165T>G synonymous_variant 0.13
rpoC 763546 c.177A>G synonymous_variant 0.15
rpoC 763570 c.201G>C synonymous_variant 0.19
rpoC 763573 c.204G>C synonymous_variant 0.2
rpoC 763576 c.207C>T synonymous_variant 0.19
rpoC 763594 c.225C>T synonymous_variant 0.22
rpoC 763615 c.246G>C synonymous_variant 0.14
rpoC 763618 c.249C>G synonymous_variant 0.14
rpoC 763622 p.Ala85Ser missense_variant 0.13
rpoC 763625 p.Lys86Ala missense_variant 0.13
rpoC 763630 c.261G>T synonymous_variant 0.15
rpoC 763636 c.267T>C synonymous_variant 0.19
rpoC 763642 c.273G>C synonymous_variant 0.19
rpoC 763660 c.291T>C synonymous_variant 0.23
rpoC 763669 c.300C>G synonymous_variant 0.21
rpoC 763675 c.306C>G synonymous_variant 0.19
rpoC 763699 c.330G>C synonymous_variant 0.13
rpoC 763702 c.333C>G synonymous_variant 0.12
rpoC 763703 c.334_336delTCGinsAGC synonymous_variant 0.12
rpoC 763708 c.339G>T synonymous_variant 0.12
rpoC 763714 c.345G>C synonymous_variant 0.14
rpoC 763717 c.348T>C synonymous_variant 0.14
rpoC 763729 c.360G>C synonymous_variant 0.14
rpoC 763732 c.363C>G synonymous_variant 0.14
rpoC 763744 c.375G>C synonymous_variant 0.13
rpoC 763751 p.Ile128Val missense_variant 0.13
rpoC 763772 p.Val135Met missense_variant 0.11
rpoC 764365 c.996C>T synonymous_variant 0.16
rpoC 764371 c.1002G>T synonymous_variant 0.16
rpoC 764377 c.1008C>G synonymous_variant 0.16
rpoC 764387 c.1018_1020delTTGinsCTC synonymous_variant 0.18
rpoC 764405 c.1036_1038delAGGinsCGT synonymous_variant 0.31
rpoC 764428 c.1059G>A synonymous_variant 0.29
rpoC 764431 c.1062G>C synonymous_variant 0.29
rpoC 764434 c.1065A>G synonymous_variant 0.29
rpoC 764435 c.1066_1068delAGGinsCGT synonymous_variant 0.3
rpoC 764441 p.Ile358Leu missense_variant 0.3
rpoC 764446 c.1077T>C synonymous_variant 0.29
rpoC 764449 c.1080G>C synonymous_variant 0.3
rpoC 764461 c.1092A>G synonymous_variant 0.34
rpoC 764485 c.1116G>C synonymous_variant 0.36
rpoC 764491 c.1122G>T synonymous_variant 0.35
rpoC 764497 c.1128A>G synonymous_variant 0.27
rpoC 764498 p.Ser377Ala missense_variant 0.25
rpoC 764503 c.1134G>C synonymous_variant 0.28
rpoC 764521 c.1152T>C synonymous_variant 0.25
rpoC 764527 c.1158C>T synonymous_variant 0.26
rpoC 764530 c.1161C>T synonymous_variant 0.24
rpoC 764533 c.1164C>T synonymous_variant 0.23
rpoC 764536 c.1167G>A synonymous_variant 0.23
rpoC 764539 c.1170C>G synonymous_variant 0.23
rpoC 764542 c.1173C>G synonymous_variant 0.25
rpoC 764548 c.1179G>T synonymous_variant 0.26
rpoC 764560 c.1191T>C synonymous_variant 0.28
rpoC 764575 c.1206T>G synonymous_variant 0.31
rpoC 764581 c.1212T>C synonymous_variant 0.32
rpoC 764582 p.Leu405Met missense_variant 0.32
rpoC 764602 c.1233C>T synonymous_variant 0.35
rpoC 764605 c.1236G>T synonymous_variant 0.34
rpoC 764611 c.1242G>T synonymous_variant 0.36
rpoC 764632 c.1263T>A synonymous_variant 0.33
rpoC 764647 c.1278C>T synonymous_variant 0.28
rpoC 764650 c.1281G>T synonymous_variant 0.28
rpoC 764662 c.1293G>C synonymous_variant 0.27
rpoC 764668 c.1299C>T synonymous_variant 0.27
rpoC 764672 p.Gln435Thr missense_variant 0.27
rpoC 764706 p.Leu446Gln missense_variant 0.25
rpoC 764716 c.1347G>C synonymous_variant 0.19
mmpL5 775639 p.Ile948Val missense_variant 1.0
mmpL5 776100 p.Thr794Ile missense_variant 1.0
rpsL 781395 c.-165T>C upstream_gene_variant 1.0
rpsL 781832 c.273T>C synonymous_variant 0.11
rpsL 781859 c.300T>C synonymous_variant 0.11
rpsL 781860 p.Ser101Ala missense_variant 0.11
embR 1416974 c.371_373delACG disruptive_inframe_deletion 0.98
rrs 1471659 n.-187C>T upstream_gene_variant 1.0
rrs 1472106 n.261G>A non_coding_transcript_exon_variant 0.47
rrs 1472108 n.263C>T non_coding_transcript_exon_variant 0.51
rrs 1472148 n.303T>C non_coding_transcript_exon_variant 0.64
rrs 1472150 n.305T>A non_coding_transcript_exon_variant 0.79
rrs 1472172 n.327T>C non_coding_transcript_exon_variant 0.82
rrs 1472225 n.380C>A non_coding_transcript_exon_variant 0.93
rrs 1472251 n.406G>A non_coding_transcript_exon_variant 0.93
rrs 1472289 n.444T>G non_coding_transcript_exon_variant 0.9
rrs 1472290 n.445C>G non_coding_transcript_exon_variant 0.9
rrs 1472297 n.453_461delGTCCGGGTT non_coding_transcript_exon_variant 0.91
rrs 1472309 n.464C>A non_coding_transcript_exon_variant 0.88
rrs 1472310 n.465T>A non_coding_transcript_exon_variant 0.88
rrs 1472312 n.468_470delGAT non_coding_transcript_exon_variant 0.88
rrs 1472324 n.479G>C non_coding_transcript_exon_variant 0.86
rrs 1472325 n.480G>C non_coding_transcript_exon_variant 0.83
rrs 1472344 n.499C>T non_coding_transcript_exon_variant 0.87
rrs 1472400 n.555C>T non_coding_transcript_exon_variant 0.81
rrs 1472412 n.567A>G non_coding_transcript_exon_variant 0.12
rrs 1472416 n.571C>T non_coding_transcript_exon_variant 0.68
rrs 1472418 n.573T>C non_coding_transcript_exon_variant 0.1
rrs 1472422 n.577T>C non_coding_transcript_exon_variant 0.61
rrs 1472426 n.581T>C non_coding_transcript_exon_variant 0.29
rrs 1472427 n.582T>G non_coding_transcript_exon_variant 0.18
rrs 1472435 n.590T>C non_coding_transcript_exon_variant 0.45
rrs 1472476 n.631A>G non_coding_transcript_exon_variant 0.6
rrs 1472494 n.649A>G non_coding_transcript_exon_variant 0.93
rrs 1472495 n.650C>T non_coding_transcript_exon_variant 0.61
rrs 1472496 n.651T>A non_coding_transcript_exon_variant 0.8
rrs 1472496 n.651T>G non_coding_transcript_exon_variant 0.9
rrs 1472498 n.653C>T non_coding_transcript_exon_variant 0.92
rrs 1472507 n.662C>G non_coding_transcript_exon_variant 0.12
rrs 1472517 n.672T>A non_coding_transcript_exon_variant 0.13
rrs 1472518 n.673G>T non_coding_transcript_exon_variant 0.13
rrs 1472530 n.685G>A non_coding_transcript_exon_variant 0.82
rrs 1472537 n.692C>T non_coding_transcript_exon_variant 0.21
rrs 1472544 n.699C>A non_coding_transcript_exon_variant 0.22
rrs 1472545 n.700A>T non_coding_transcript_exon_variant 0.22
rrs 1472558 n.713G>A non_coding_transcript_exon_variant 0.74
rrs 1472566 n.721G>A non_coding_transcript_exon_variant 0.22
rrs 1472569 n.724G>A non_coding_transcript_exon_variant 0.73
rrs 1472571 n.726G>C non_coding_transcript_exon_variant 0.23
rrs 1472579 n.734G>C non_coding_transcript_exon_variant 0.16
rrs 1472580 n.735C>T non_coding_transcript_exon_variant 0.13
rrs 1472581 n.736A>C non_coding_transcript_exon_variant 0.97
rrs 1472581 n.736A>T non_coding_transcript_exon_variant 0.95
rrs 1472582 n.737G>A non_coding_transcript_exon_variant 0.6
rrs 1472584 n.739A>T non_coding_transcript_exon_variant 0.62
rrs 1472597 n.752G>A non_coding_transcript_exon_variant 0.72
rrs 1472598 n.753A>C non_coding_transcript_exon_variant 0.25
rrs 1472599 n.754G>T non_coding_transcript_exon_variant 0.24
rrs 1472607 n.762G>A non_coding_transcript_exon_variant 0.73
rrs 1472616 n.771G>A non_coding_transcript_exon_variant 0.2
rrs 1472655 n.810G>A non_coding_transcript_exon_variant 1.0
rrs 1472655 n.810G>T non_coding_transcript_exon_variant 1.0
rrs 1472658 n.813G>A non_coding_transcript_exon_variant 0.24
rrs 1472660 n.815T>C non_coding_transcript_exon_variant 0.75
rrs 1472661 n.816A>G non_coding_transcript_exon_variant 0.94
rrs 1472670 n.825G>T non_coding_transcript_exon_variant 0.17
rrs 1472673 n.828T>A non_coding_transcript_exon_variant 0.91
rrs 1472674 n.829T>C non_coding_transcript_exon_variant 0.75
rrs 1472677 n.832C>A non_coding_transcript_exon_variant 0.96
rrs 1472687 n.842A>T non_coding_transcript_exon_variant 0.94
rrs 1472690 n.845C>A non_coding_transcript_exon_variant 0.22
rrs 1472697 n.852T>C non_coding_transcript_exon_variant 0.92
rrs 1472713 n.868T>C non_coding_transcript_exon_variant 0.92
rrs 1472714 n.869A>G non_coding_transcript_exon_variant 0.66
rrs 1472716 n.871C>T non_coding_transcript_exon_variant 0.28
rrs 1472742 n.897C>T non_coding_transcript_exon_variant 0.22
rrs 1472744 n.899A>G non_coding_transcript_exon_variant 0.23
rrs 1472781 n.936C>T non_coding_transcript_exon_variant 0.24
rrs 1472790 n.945T>C non_coding_transcript_exon_variant 0.63
rrs 1472793 n.948A>T non_coding_transcript_exon_variant 0.2
rrs 1472803 n.958T>A non_coding_transcript_exon_variant 0.14
rrs 1472824 n.979T>A non_coding_transcript_exon_variant 0.68
rrs 1472825 n.980G>A non_coding_transcript_exon_variant 0.55
rrs 1472827 n.982G>T non_coding_transcript_exon_variant 0.14
rrs 1472828 n.983T>C non_coding_transcript_exon_variant 0.68
rrs 1472836 n.991G>A non_coding_transcript_exon_variant 0.3
rrs 1472875 n.1030T>G non_coding_transcript_exon_variant 0.5
rrs 1472880 n.1035G>A non_coding_transcript_exon_variant 0.59
rrs 1472895 n.1050C>T non_coding_transcript_exon_variant 0.74
rrs 1472952 n.1107T>C non_coding_transcript_exon_variant 0.75
rrs 1472955 n.1110C>T non_coding_transcript_exon_variant 0.78
rrs 1472956 n.1111T>C non_coding_transcript_exon_variant 0.81
rrs 1472957 n.1112C>T non_coding_transcript_exon_variant 0.17
rrs 1472970 n.1126delG non_coding_transcript_exon_variant 0.62
rrs 1472973 n.1128A>T non_coding_transcript_exon_variant 0.75
rrs 1472974 n.1129A>C non_coding_transcript_exon_variant 0.63
rrs 1472975 n.1130T>G non_coding_transcript_exon_variant 0.6
rrs 1472987 n.1142G>A non_coding_transcript_exon_variant 0.75
rrs 1472990 n.1145A>G non_coding_transcript_exon_variant 0.77
rrs 1473035 n.1190G>A non_coding_transcript_exon_variant 0.88
rrs 1473055 n.1210C>T non_coding_transcript_exon_variant 0.86
rrs 1473056 n.1211A>T non_coding_transcript_exon_variant 0.87
rrs 1473066 n.1221A>G non_coding_transcript_exon_variant 0.85
rrs 1473088 n.1243A>G non_coding_transcript_exon_variant 0.8
rrs 1473093 n.1248C>T non_coding_transcript_exon_variant 0.78
rrs 1473099 n.1254T>A non_coding_transcript_exon_variant 0.67
rrs 1473100 n.1255G>A non_coding_transcript_exon_variant 0.78
rrs 1473104 n.1259C>T non_coding_transcript_exon_variant 0.8
rrs 1473110 n.1265T>G non_coding_transcript_exon_variant 0.79
rrs 1473111 n.1266A>G non_coding_transcript_exon_variant 0.79
rrs 1473115 n.1270G>T non_coding_transcript_exon_variant 0.73
rrs 1473121 n.1276T>C non_coding_transcript_exon_variant 0.82
rrs 1473122 n.1277T>A non_coding_transcript_exon_variant 0.67
rrs 1473127 n.1282G>A non_coding_transcript_exon_variant 0.66
rrs 1473145 n.1300C>T non_coding_transcript_exon_variant 0.83
rrs 1473166 n.1321G>A non_coding_transcript_exon_variant 0.79
rrs 1473252 n.1407T>C non_coding_transcript_exon_variant 0.79
rrs 1473276 n.1431A>G non_coding_transcript_exon_variant 0.78
rrs 1473290 n.1445C>T non_coding_transcript_exon_variant 0.72
rrs 1473301 n.1456T>C non_coding_transcript_exon_variant 0.74
rrs 1473315 n.1470T>C non_coding_transcript_exon_variant 0.71
rrs 1473316 n.1471C>T non_coding_transcript_exon_variant 0.73
rrl 1473844 n.187C>T non_coding_transcript_exon_variant 0.2
rrl 1473870 n.213G>A non_coding_transcript_exon_variant 0.21
rrl 1473871 n.214T>C non_coding_transcript_exon_variant 0.21
rrl 1473876 n.219G>A non_coding_transcript_exon_variant 0.23
rrl 1473887 n.230T>G non_coding_transcript_exon_variant 0.2
rrl 1473888 n.231T>A non_coding_transcript_exon_variant 0.2
rrl 1473898 n.241C>T non_coding_transcript_exon_variant 0.23
rrl 1473899 n.242A>G non_coding_transcript_exon_variant 0.23
rrl 1473916 n.259C>A non_coding_transcript_exon_variant 0.2
rrl 1473922 n.265A>T non_coding_transcript_exon_variant 0.2
rrl 1473923 n.266C>G non_coding_transcript_exon_variant 0.2
rrl 1474151 n.494C>T non_coding_transcript_exon_variant 0.4
rrl 1474155 n.498G>A non_coding_transcript_exon_variant 0.4
rrl 1474163 n.506C>T non_coding_transcript_exon_variant 0.14
rrl 1474164 n.507C>T non_coding_transcript_exon_variant 0.71
rrl 1474166 n.509G>C non_coding_transcript_exon_variant 0.5
rrl 1474171 n.514C>T non_coding_transcript_exon_variant 0.12
rrl 1474179 n.522C>T non_coding_transcript_exon_variant 0.6
rrl 1474181 n.524C>T non_coding_transcript_exon_variant 0.14
rrl 1474183 n.526T>C non_coding_transcript_exon_variant 0.65
rrl 1474184 n.527C>T non_coding_transcript_exon_variant 0.91
rrl 1474185 n.528G>A non_coding_transcript_exon_variant 0.12
rrl 1474186 n.529A>G non_coding_transcript_exon_variant 0.67
rrl 1474197 n.540C>T non_coding_transcript_exon_variant 0.2
rrl 1474201 n.544T>C non_coding_transcript_exon_variant 0.93
rrl 1474218 n.561T>A non_coding_transcript_exon_variant 0.74
rrl 1474228 n.571T>A non_coding_transcript_exon_variant 0.74
rrl 1474249 n.592G>T non_coding_transcript_exon_variant 0.94
rrl 1474252 n.595T>A non_coding_transcript_exon_variant 0.72
rrl 1474253 n.596A>T non_coding_transcript_exon_variant 0.65
rrl 1474269 n.612C>T non_coding_transcript_exon_variant 0.76
rrl 1474281 n.624A>G non_coding_transcript_exon_variant 0.75
rrl 1474289 n.633_647delTTTTCCTCTCCGGAG non_coding_transcript_exon_variant 0.45
rrl 1474306 n.649A>T non_coding_transcript_exon_variant 0.56
rrl 1474308 n.651G>T non_coding_transcript_exon_variant 0.56
rrl 1474310 n.653T>G non_coding_transcript_exon_variant 0.59
rrl 1474316 n.659T>C non_coding_transcript_exon_variant 0.56
rrl 1474348 n.691C>T non_coding_transcript_exon_variant 0.6
rrl 1474351 n.694G>T non_coding_transcript_exon_variant 0.56
rrl 1474353 n.696A>C non_coding_transcript_exon_variant 0.5
rrl 1474354 n.697C>T non_coding_transcript_exon_variant 0.56
rrl 1474355 n.698A>C non_coding_transcript_exon_variant 0.36
rrl 1474356 n.699T>A non_coding_transcript_exon_variant 0.36
rrl 1474359 n.702C>G non_coding_transcript_exon_variant 0.36
rrl 1474362 n.705A>G non_coding_transcript_exon_variant 0.64
rrl 1474383 n.726G>T non_coding_transcript_exon_variant 0.33
rrl 1474387 n.730C>T non_coding_transcript_exon_variant 0.58
rrl 1474450 n.793T>G non_coding_transcript_exon_variant 0.78
rrl 1474454 n.797G>A non_coding_transcript_exon_variant 0.9
rrl 1474488 n.831G>T non_coding_transcript_exon_variant 0.98
rrl 1474497 n.840G>C non_coding_transcript_exon_variant 0.98
rrl 1474506 n.849C>G non_coding_transcript_exon_variant 0.96
rrl 1474516 n.859C>A non_coding_transcript_exon_variant 0.96
rrl 1474537 n.880G>A non_coding_transcript_exon_variant 0.98
rrl 1474626 n.969T>C non_coding_transcript_exon_variant 0.94
rrl 1474632 n.975G>T non_coding_transcript_exon_variant 0.96
rrl 1474636 n.979A>T non_coding_transcript_exon_variant 0.98
rrl 1474637 n.980C>T non_coding_transcript_exon_variant 0.98
rrl 1474638 n.981C>G non_coding_transcript_exon_variant 0.98
rrl 1474639 n.982G>C non_coding_transcript_exon_variant 0.95
rrl 1474663 n.1006C>T non_coding_transcript_exon_variant 0.91
rrl 1474673 n.1016T>C non_coding_transcript_exon_variant 0.95
rrl 1474676 n.1019T>C non_coding_transcript_exon_variant 0.93
rrl 1474677 n.1020A>G non_coding_transcript_exon_variant 1.0
rrl 1474692 n.1035G>A non_coding_transcript_exon_variant 0.9
rrl 1474734 n.1077G>T non_coding_transcript_exon_variant 0.98
rrl 1474749 n.1092C>T non_coding_transcript_exon_variant 0.97
rrl 1474753 n.1097delC non_coding_transcript_exon_variant 0.98
rrl 1474760 n.1103A>G non_coding_transcript_exon_variant 0.99
rrl 1474779 n.1122G>A non_coding_transcript_exon_variant 0.97
rrl 1474780 n.1123C>T non_coding_transcript_exon_variant 0.92
rrl 1474782 n.1125G>A non_coding_transcript_exon_variant 0.97
rrl 1474790 n.1133C>T non_coding_transcript_exon_variant 0.89
rrl 1474794 n.1137C>T non_coding_transcript_exon_variant 0.99
rrl 1474823 n.1166C>G non_coding_transcript_exon_variant 0.98
rrl 1474827 n.1170C>T non_coding_transcript_exon_variant 0.97
rrl 1474830 n.1173A>T non_coding_transcript_exon_variant 0.99
rrl 1474831 n.1174A>G non_coding_transcript_exon_variant 0.99
rrl 1474832 n.1175A>T non_coding_transcript_exon_variant 0.95
rrl 1474869 n.1212G>T non_coding_transcript_exon_variant 0.94
rrl 1474904 n.1247G>C non_coding_transcript_exon_variant 1.0
rrl 1474905 n.1248T>C non_coding_transcript_exon_variant 0.92
rrl 1474913 n.1256T>C non_coding_transcript_exon_variant 0.95
rrl 1474936 n.1279C>T non_coding_transcript_exon_variant 0.9
rrl 1474938 n.1281G>A non_coding_transcript_exon_variant 0.88
rrl 1474946 n.1289C>T non_coding_transcript_exon_variant 1.0
rrl 1474948 n.1291C>T non_coding_transcript_exon_variant 1.0
rrl 1475060 n.1404delC non_coding_transcript_exon_variant 1.0
rrl 1475063 n.1406A>T non_coding_transcript_exon_variant 1.0
rrl 1475065 n.1408G>A non_coding_transcript_exon_variant 1.0
rrl 1475067 n.1410A>G non_coding_transcript_exon_variant 1.0
rrl 1475068 n.1411A>G non_coding_transcript_exon_variant 1.0
rrl 1475076 n.1419C>A non_coding_transcript_exon_variant 1.0
rrl 1475078 n.1421T>C non_coding_transcript_exon_variant 1.0
rrl 1475079 n.1422T>C non_coding_transcript_exon_variant 1.0
rrl 1475081 n.1424C>T non_coding_transcript_exon_variant 1.0
rrl 1475090 n.1433A>T non_coding_transcript_exon_variant 1.0
rrl 1475091 n.1434G>A non_coding_transcript_exon_variant 1.0
rrl 1475104 n.1447T>A non_coding_transcript_exon_variant 1.0
rrl 1475108 n.1451C>T non_coding_transcript_exon_variant 1.0
rrl 1475111 n.1454G>A non_coding_transcript_exon_variant 1.0
rrl 1475114 n.1457C>T non_coding_transcript_exon_variant 1.0
rrl 1475116 n.1459G>A non_coding_transcript_exon_variant 1.0
rrl 1475119 n.1462C>T non_coding_transcript_exon_variant 1.0
rrl 1475124 n.1467A>T non_coding_transcript_exon_variant 1.0
rrl 1475129 n.1472G>A non_coding_transcript_exon_variant 1.0
rrl 1475173 n.1516A>T non_coding_transcript_exon_variant 1.0
rrl 1475175 n.1518G>C non_coding_transcript_exon_variant 1.0
rrl 1475505 n.1848G>A non_coding_transcript_exon_variant 0.67
rrl 1475526 n.1869C>A non_coding_transcript_exon_variant 1.0
rrl 1475531 n.1874C>T non_coding_transcript_exon_variant 1.0
rrl 1475573 n.1916G>A non_coding_transcript_exon_variant 0.4
rrl 1475649 n.1992A>G non_coding_transcript_exon_variant 0.67
rrl 1475655 n.1998T>G non_coding_transcript_exon_variant 0.8
rrl 1475659 n.2002G>A non_coding_transcript_exon_variant 0.88
rrl 1475672 n.2015C>T non_coding_transcript_exon_variant 0.16
rrl 1475673 n.2016T>C non_coding_transcript_exon_variant 0.16
rrl 1475686 n.2029C>G non_coding_transcript_exon_variant 0.1
rrl 1475696 n.2039T>A non_coding_transcript_exon_variant 0.8
rrl 1475697 n.2040C>A non_coding_transcript_exon_variant 0.74
rrl 1475699 n.2042C>T non_coding_transcript_exon_variant 1.0
rrl 1475702 n.2045G>T non_coding_transcript_exon_variant 0.74
rrl 1475703 n.2046A>T non_coding_transcript_exon_variant 0.82
rrl 1475751 n.2094C>T non_coding_transcript_exon_variant 0.11
rrl 1475752 n.2095C>T non_coding_transcript_exon_variant 0.93
rrl 1475753 n.2096C>G non_coding_transcript_exon_variant 0.93
rrl 1475758 n.2101A>G non_coding_transcript_exon_variant 0.11
rrl 1475775 n.2118G>T non_coding_transcript_exon_variant 0.92
rrl 1475883 n.2226A>C non_coding_transcript_exon_variant 0.97
rrl 1475897 n.2240T>C non_coding_transcript_exon_variant 0.88
rrl 1475898 n.2241A>G non_coding_transcript_exon_variant 0.97
rrl 1475899 n.2242G>A non_coding_transcript_exon_variant 0.97
rrl 1475916 n.2259C>G non_coding_transcript_exon_variant 0.98
rrl 1475943 n.2286G>A non_coding_transcript_exon_variant 0.99
rrl 1475952 n.2295A>G non_coding_transcript_exon_variant 0.99
rrl 1475970 n.2313C>T non_coding_transcript_exon_variant 0.98
rrl 1475977 n.2320A>G non_coding_transcript_exon_variant 0.98
rrl 1475978 n.2321C>T non_coding_transcript_exon_variant 0.96
rrl 1475988 n.2331A>G non_coding_transcript_exon_variant 0.98
rrl 1476001 n.2344T>C non_coding_transcript_exon_variant 0.99
rrl 1476030 n.2373A>G non_coding_transcript_exon_variant 0.88
rrl 1476032 n.2375C>A non_coding_transcript_exon_variant 0.86
rrl 1476034 n.2377C>G non_coding_transcript_exon_variant 0.86
rrl 1476035 n.2378G>C non_coding_transcript_exon_variant 0.76
rrl 1476044 n.2387T>G non_coding_transcript_exon_variant 0.79
rrl 1476045 n.2388G>T non_coding_transcript_exon_variant 0.89
rrl 1476047 n.2390G>T non_coding_transcript_exon_variant 0.89
rrl 1476049 n.2392C>T non_coding_transcript_exon_variant 0.89
rrl 1476056 n.2399G>A non_coding_transcript_exon_variant 0.87
rrl 1476076 n.2419A>G non_coding_transcript_exon_variant 0.91
rrl 1476088 n.2431A>T non_coding_transcript_exon_variant 0.92
rrl 1476089 n.2432T>C non_coding_transcript_exon_variant 0.92
rrl 1476095 n.2438C>T non_coding_transcript_exon_variant 0.91
rrl 1476099 n.2442A>G non_coding_transcript_exon_variant 0.91
rrl 1476100 n.2443A>T non_coding_transcript_exon_variant 0.91
rrl 1476103 n.2446C>G non_coding_transcript_exon_variant 0.91
rrl 1476105 n.2450delA non_coding_transcript_exon_variant 0.91
rrl 1476110 n.2453G>C non_coding_transcript_exon_variant 0.91
rrl 1476113 n.2456T>A non_coding_transcript_exon_variant 0.89
rrl 1476115 n.2458T>C non_coding_transcript_exon_variant 0.89
rrl 1476130 n.2473G>A non_coding_transcript_exon_variant 0.93
rrl 1476131 n.2474C>T non_coding_transcript_exon_variant 0.89
rrl 1476164 n.2507A>G non_coding_transcript_exon_variant 0.91
rrl 1476165 n.2508T>G non_coding_transcript_exon_variant 0.94
rrl 1476194 n.2537A>G non_coding_transcript_exon_variant 0.92
rrl 1476200 n.2543A>T non_coding_transcript_exon_variant 0.91
rrl 1476201 n.2544C>T non_coding_transcript_exon_variant 0.91
rrl 1476213 n.2556G>T non_coding_transcript_exon_variant 0.79
rrl 1476214 n.2557G>T non_coding_transcript_exon_variant 0.9
rrl 1476215 n.2558C>T non_coding_transcript_exon_variant 0.9
rrl 1476224 n.2567A>G non_coding_transcript_exon_variant 0.79
rrl 1476225 n.2568T>G non_coding_transcript_exon_variant 0.11
rrl 1476245 n.2588C>T non_coding_transcript_exon_variant 0.62
rrl 1476250 n.2593C>G non_coding_transcript_exon_variant 0.23
rrl 1476251 n.2594T>A non_coding_transcript_exon_variant 0.68
rrl 1476251 n.2594T>C non_coding_transcript_exon_variant 0.56
rrl 1476252 n.2595T>G non_coding_transcript_exon_variant 0.56
rrl 1476256 n.2599A>T non_coding_transcript_exon_variant 0.53
rrl 1476257 n.2600G>C non_coding_transcript_exon_variant 0.27
rrl 1476260 n.2603A>G non_coding_transcript_exon_variant 0.85
rrl 1476267 n.2610G>C non_coding_transcript_exon_variant 0.49
rrl 1476276 n.2619C>G non_coding_transcript_exon_variant 0.4
rrl 1476280 n.2623A>C non_coding_transcript_exon_variant 0.38
rrl 1476281 n.2624T>C non_coding_transcript_exon_variant 0.44
rrl 1476309 n.2652G>C non_coding_transcript_exon_variant 0.27
rrl 1476311 n.2654G>C non_coding_transcript_exon_variant 0.76
rrl 1476312 n.2655T>C non_coding_transcript_exon_variant 0.76
rrl 1476313 n.2656G>A non_coding_transcript_exon_variant 0.38
rrl 1476332 n.2675G>C non_coding_transcript_exon_variant 0.36
rrl 1476338 n.2681C>T non_coding_transcript_exon_variant 0.33
rrl 1476353 n.2696G>T non_coding_transcript_exon_variant 0.36
rrl 1476358 n.2701T>C non_coding_transcript_exon_variant 0.38
rrl 1476359 n.2702C>G non_coding_transcript_exon_variant 0.56
rrl 1476368 n.2711T>C non_coding_transcript_exon_variant 0.53
rrl 1476369 n.2712C>T non_coding_transcript_exon_variant 0.85
rrl 1476372 n.2715T>C non_coding_transcript_exon_variant 0.34
rrl 1476381 n.2724G>C non_coding_transcript_exon_variant 0.64
rrl 1476382 n.2725A>G non_coding_transcript_exon_variant 0.31
rrl 1476383 n.2726T>A non_coding_transcript_exon_variant 0.31
rrl 1476425 n.2768G>T non_coding_transcript_exon_variant 0.25
rrl 1476428 n.2771C>T non_coding_transcript_exon_variant 0.97
rrl 1476429 n.2772A>C non_coding_transcript_exon_variant 0.26
rrl 1476466 n.2809C>T non_coding_transcript_exon_variant 0.77
rrl 1476481 n.2824T>C non_coding_transcript_exon_variant 0.21
rrl 1476506 n.2849T>C non_coding_transcript_exon_variant 0.92
rrl 1476515 n.2858C>T non_coding_transcript_exon_variant 0.84
rrl 1476517 n.2860C>T non_coding_transcript_exon_variant 0.82
rrl 1476524 n.2867C>A non_coding_transcript_exon_variant 0.89
rrl 1476525 n.2868A>G non_coding_transcript_exon_variant 0.9
rrl 1476530 n.2873C>T non_coding_transcript_exon_variant 0.11
rrl 1476536 n.2879G>A non_coding_transcript_exon_variant 0.89
rrl 1476538 n.2881A>G non_coding_transcript_exon_variant 0.87
rrl 1476567 n.2910C>T non_coding_transcript_exon_variant 0.74
rrl 1476584 n.2927C>T non_coding_transcript_exon_variant 0.55
rrl 1476585 n.2928A>G non_coding_transcript_exon_variant 0.5
rrl 1476586 n.2929C>T non_coding_transcript_exon_variant 0.5
rrl 1476594 n.2937C>T non_coding_transcript_exon_variant 0.47
rrl 1476603 n.2946G>A non_coding_transcript_exon_variant 0.44
rrl 1476613 n.2956G>A non_coding_transcript_exon_variant 0.31
rrl 1476614 n.2957A>T non_coding_transcript_exon_variant 0.29
rrl 1476616 n.2959A>G non_coding_transcript_exon_variant 0.29
rrl 1476619 n.2962C>T non_coding_transcript_exon_variant 0.29
rrl 1476628 n.2971T>A non_coding_transcript_exon_variant 0.24
rrl 1476629 n.2972C>A non_coding_transcript_exon_variant 0.26
rrl 1476630 n.2973A>G non_coding_transcript_exon_variant 0.26
rrl 1476631 n.2974G>T non_coding_transcript_exon_variant 0.24
rpsA 1833952 c.411C>T synonymous_variant 0.15
rpsA 1833955 c.414G>C synonymous_variant 0.18
rpsA 1833970 c.429G>C synonymous_variant 0.2
rpsA 1833979 c.438T>C synonymous_variant 0.19
rpsA 1833985 c.444G>C synonymous_variant 0.2
rpsA 1833988 c.447C>T synonymous_variant 0.2
rpsA 1833991 c.450C>G synonymous_variant 0.21
rpsA 1834009 c.468C>T synonymous_variant 0.21
rpsA 1834012 c.471G>T synonymous_variant 0.2
rpsA 1834015 c.474G>C synonymous_variant 0.22
rpsA 1834030 c.489C>G synonymous_variant 0.25
rpsA 1834034 p.Ile165Val missense_variant 0.25
rpsA 1834069 c.528G>C synonymous_variant 0.24
rpsA 1834093 c.552G>C synonymous_variant 0.15
rpsA 1834099 c.558C>G synonymous_variant 0.12
rpsA 1834261 c.720A>G synonymous_variant 0.16
rpsA 1834264 c.723G>C synonymous_variant 0.16
rpsA 1834294 c.753G>C synonymous_variant 0.26
rpsA 1834298 p.Gln253Glu missense_variant 0.25
rpsA 1834303 c.762T>C synonymous_variant 0.25
rpsA 1834307 p.Asp256Gln missense_variant 0.26
rpsA 1834312 c.771G>A synonymous_variant 0.26
rpsA 1834348 c.807T>C synonymous_variant 0.24
rpsA 1834354 c.813G>C synonymous_variant 0.23
rpsA 1834357 c.816T>C synonymous_variant 0.23
rpsA 1834361 c.820T>C synonymous_variant 0.23
rpsA 1834366 c.825A>G synonymous_variant 0.24
rpsA 1834378 c.837T>G synonymous_variant 0.26
rpsA 1834395 p.Arg285Gln missense_variant 0.27
rpsA 1834405 c.864C>T synonymous_variant 0.27
rpsA 1834411 c.870T>G synonymous_variant 0.22
rpsA 1834417 c.876G>C synonymous_variant 0.21
rpsA 1834423 c.882G>C synonymous_variant 0.2
rpsA 1834427 p.Ile296Val missense_variant 0.21
rpsA 1834447 c.906C>G synonymous_variant 0.19
rpsA 1834451 c.910_912delTTGinsCTC synonymous_variant 0.18
rpsA 1834456 c.915T>C synonymous_variant 0.19
rpsA 1834468 c.927A>G synonymous_variant 0.17
rpsA 1834474 c.933C>G synonymous_variant 0.18
rpsA 1834486 p.Glu315Asp missense_variant 0.15
rpsA 1834498 c.957C>T synonymous_variant 0.12
rpsA 1834501 c.960G>C synonymous_variant 0.12
rpsA 1834504 c.963G>C synonymous_variant 0.12
tlyA 1917972 c.33A>G synonymous_variant 1.0
katG 2154724 p.Arg463Leu missense_variant 1.0
PPE35 2167926 p.Leu896Ser missense_variant 1.0
Rv1979c 2222754 p.Lys137Asn missense_variant 1.0
Rv1979c 2223293 c.-129A>G upstream_gene_variant 1.0
pncA 2289047 c.195C>T synonymous_variant 1.0
pncA 2289365 c.-125delC upstream_gene_variant 1.0
ahpC 2726105 c.-88G>A upstream_gene_variant 0.98
pepQ 2860448 c.-30C>A upstream_gene_variant 1.0
ald 3086788 c.-32T>C upstream_gene_variant 1.0
fprA 3473996 c.-11_-10insA upstream_gene_variant 1.0
clpC1 4039469 c.1236T>C synonymous_variant 0.11
clpC1 4039481 c.1224T>G synonymous_variant 0.12
clpC1 4039850 c.855T>C synonymous_variant 0.19
clpC1 4039865 c.840T>C synonymous_variant 0.18
clpC1 4039871 c.834C>G synonymous_variant 0.18
clpC1 4039874 p.Asn277Arg missense_variant 0.17
clpC1 4039904 c.801A>G synonymous_variant 0.21
clpC1 4039928 p.Ser259Thr missense_variant 0.12
embC 4242075 p.Arg738Gln missense_variant 1.0
embA 4242643 c.-590C>T upstream_gene_variant 1.0
whiB6 4338595 c.-75delG upstream_gene_variant 1.0
gid 4407588 c.615A>G synonymous_variant 0.98