lineage | Count |
---|---|
lineage4 | 5 |
lineage4.9 | 44 |
lineage4.6.1.2 | 1 |
lineage4.8 | 5 |
lineage4.1.2.1 | 5 |
lineage3.1.2.1 | 1 |
lineage4.3.4.2 | 1 |
lineage4.8.2 | 1 |
lineage4.1.1 | 1 |
lineage4.1.1.3.1 | 1 |
6 | |
lineage3 | 10 |
lineage4.1.3 | 1 |
La1.8.1 | 3 |
lineage2.2.1 | 16 |
lineage4.3.2.1 | 2 |
lineage3.1.2 | 1 |
lineage4.6.1.1 | 1 |
La1.7.X-unk4 | 1 |
La1.3 | 1 |
lineage2.2.2 | 1 |
lineage4.5;lineage2.2.1 | 1 |
lineage4.3.2 | 1 |
lineage1.1.1.1 | 1 |
lineage5.1.1 | 1 |
lineage3.1.1 | 1 |
lineage4.1.1.3 | 1 |
lineage4.3.4.2.1 | 4 |
La1.6 | 1 |
lineage4.4.1.1;lineage4.1.2.1 | 1 |
La2 | 1 |
lineage4.2.1 | 1 |
lineage4.4.1.1 | 1 |
lineage4.1.2 | 2 |
lineage4.3.4 | 1 |
lineage4.1 | 1 |
spoligotype | Count |
---|---|
None | 127 |
ID | Drug resistance | Lineage | Country iso2 | ERR2229233 | Sensitive | lineage4 | None | SRR3675552 | RR-TB | lineage4.9 | None | ERR4816310 | HR-TB | lineage4.6.1.2 | None | ERR2229198 | MDR-TB | lineage4.8 | None | ERR4818646 | Sensitive | lineage4.1.2.1 | None | ERR4816717 | RR-TB | lineage3.1.2.1 | None | ERR4816729 | Sensitive | lineage4.9 | None | SAMN02380982 | MDR-TB | lineage4.3.4.2 | None | SRR5007169 | RR-TB | lineage4.8.2 | None | ERR4817915 | RR-TB | lineage4.9 | None | ERR4818259 | RR-TB | lineage4.1.1 | None | SRR5007168 | RR-TB | lineage4.9 | None | SRR5007161 | RR-TB | lineage4.1.1.3.1 | None | ERR4819863 | RR-TB | lineage4.9 | None | SRR5007170 | RR-TB | lineage4.9 | None | ERR4819383 | RR-TB | lineage4.9 | None | ERR4820030 | Other | lineage4.9 | None | ERR1023509 | Other | None | SRR6046376 | Other | lineage3 | None | ERR4821143 | RR-TB | lineage4.9 | None | ERR4821172 | RR-TB | lineage4.9 | None | ERR4821214 | RR-TB | None | ERR4821276 | Other | lineage3 | None | ERR4821811 | RR-TB | lineage4.9 | None | ERR4821128 | MDR-TB | lineage4.1.3 | None | SRR6046117 | RR-TB | lineage4.9 | None | ERR4821272 | RR-TB | lineage4.1.2.1 | None | SRR6044936 | Other | lineage4 | None | ERR502474 | Pre-XDR-TB | lineage4.9 | None | SRR6046839 | Other | lineage4.9 | None | ERR502470 | RR-TB | lineage4.9 | None | ERR502473 | Pre-XDR-TB | lineage4.9 | None | ERR3439489 | RR-TB | La1.8.1 | None | ERR502478 | RR-TB | lineage4.9 | None | SRR6896545 | Other | lineage4.9 | None | ERR5311077 | RR-TB | La1.8.1 | None | DRR184629 | Other | lineage2.2.1 | None | ERR108125 | Pre-XDR-TB | lineage4.9 | None | ERR3283006 | RR-TB | lineage4.9 | None | ERR3283046 | MDR-TB | lineage4.9 | None | ERR502479 | RR-TB | lineage4.9 | None | ERR502481 | Pre-XDR-TB | lineage4.9 | None | ERR501642 | Sensitive | lineage4.3.2.1 | None | SRR6982246 | Sensitive | lineage4 | None | SRR6797437 | Sensitive | lineage3.1.2 | None | SRR7535047 | RR-TB | lineage4.6.1.1 | None | SRR9971168 | Other | lineage4.3.2.1 | None | ERR1023502 | MDR-TB | lineage2.2.1 | None | ERR4024582 | MDR-TB | lineage4.1.2.1 | None | ERR3797062 | RR-TB | lineage4.9 | None | ERR3445487 | Other | La1.7.X-unk4 | None | ERR3468488 | RR-TB | La1.8.1 | None | ERR4187652 | Other | lineage4.9 | None | ERR4457829 | MDR-TB | lineage4.1.2.1 | None | ERR4769436 | Other | La1.3 | None | ERR4769508 | RR-TB | lineage4.9 | None | ERR5908124 | Other | lineage4.8 | None | ERR4769530 | RR-TB | lineage4.9 | None | ERR4769554 | RR-TB | lineage4.9 | None | ERR4808964 | RR-TB | lineage2.2.1 | None | ERR4796351 | MDR-TB | lineage4.9 | None | ERR4809333 | Pre-XDR-TB | lineage2.2.2 | None | ERR4811035 | Pre-XDR-TB | lineage4.5;lineage2.2.1 | None | ERR6866241 | Other | lineage4.3.2 | None | ERR5987263 | MDR-TB | lineage2.2.1 | None | ERR752012 | HR-TB | lineage1.1.1.1 | None | ERR751345 | Other | lineage5.1.1 | None | ERR9119120 | Other | lineage4.8 | None | ERR9285979 | RR-TB | lineage3.1.1 | None | ERR9119733 | MDR-TB | lineage2.2.1 | None | ERR9786164 | RR-TB | lineage4.1.1.3 | None | SRR10315558 | Sensitive | lineage2.2.1 | None | SRR1049559 | MDR-TB | lineage4.3.4.2.1 | None | SRR1049560 | MDR-TB | lineage4.3.4.2.1 | None | SRR1140736 | RR-TB | None | SRR1049673 | Pre-XDR-TB | lineage3 | None | SRR1062918 | Pre-XDR-TB | lineage3 | None | SRR10869071 | MDR-TB | lineage2.2.1 | None | SRR10993951 | RR-TB | La1.6 | None | SRR1140716 | Pre-XDR-TB | lineage3 | None | SRR1049672 | Other | lineage3 | None | SRR1049725 | RR-TB | lineage4.1.2.1 | None | SRR1049726 | MDR-TB | lineage4.4.1.1;lineage4.1.2.1 | None | SRR1062871 | MDR-TB | lineage4.3.4.2.1 | None | SRR1062928 | RR-TB | lineage4 | None | SRR1173385 | Sensitive | lineage4.9 | None | SRR1140753 | MDR-TB | lineage4.3.4.2.1 | None | SRR1173185 | HR-TB | lineage4.9 | None | SRR1173281 | RR-TB | lineage3 | None | SRR1173310 | MDR-TB | None | SRR1173170 | Other | lineage4.9 | None | SRR1173719 | HR-TB | lineage3 | None | SRR1173515 | HR-TB | lineage4.9 | None | SRR1180446 | Other | lineage4.9 | None | SRR1173740 | Other | None | SRR1173770 | Other | lineage4.9 | None | SRR1180440 | Other | lineage4.9 | None | SRR1184308 | Sensitive | lineage4.9 | None | SRR16156188 | HR-TB | lineage4.9 | None | SRR1184329 | MDR-TB | lineage4.9 | None | SRR1196545 | HR-TB | lineage4.9 | None | SRR11972425 | Pre-XDR-TB | lineage2.2.1 | None | SRR13888750 | Other | La2 | None | SRR1196478 | MDR-TB | lineage4.9 | None | SRR11972417 | MDR-TB | lineage2.2.1 | None | SRR14782539 | MDR-TB | lineage4.2.1 | None | SRR15315797 | RR-TB | lineage2.2.1 | None | SRR16156804 | RR-TB | lineage4.9 | None | SRR16156697 | MDR-TB | lineage2.2.1 | None | SRR16156832 | RR-TB | None | SRR1735596 | RR-TB | lineage4.9 | None | SRR16157123 | Other | lineage4.9 | None | SRR17567917 | RR-TB | lineage4.4.1.1 | None | SRR22424765 | MDR-TB | lineage4 | None | SRR18002881 | Pre-XDR-TB | lineage2.2.1 | None | SRR18003047 | MDR-TB | lineage2.2.1 | None | SRR22175249 | Pre-XDR-TB | lineage2.2.1 | None | SRR3619841 | Pre-XDR-TB | lineage2.2.1 | None | SRR3618864 | Pre-XDR-TB | lineage2.2.1 | None | ERR1750944 | Other | lineage4.1.2 | za | SRR3675230 | RR-TB | lineage3 | None | ERR4812874 | Other | lineage4.3.4 | None | ERR4814841 | Other | lineage4.1 | None | ERR4815079 | RR-TB | lineage3 | None | ERR4813263 | MDR-TB | lineage4.8 | None | SAMEA3501073 | RR-TB | lineage4.8 | None | SRR3675531 | Sensitive | lineage4.1.2 | None |
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