Run ID: ERR4821276
Sample name:
Date: 01-04-2023 17:09:42
Number of reads: 3003745
Percentage reads mapped: 51.03
Strain: lineage3
Drug-resistance: Other
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage3 | East-African-Indian | CAS | RD750 | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
gyrA | 7386 | p.Ile29Leu | missense_variant | 0.12 |
gyrA | 7394 | c.93T>C | synonymous_variant | 0.12 |
gyrA | 7406 | c.105G>C | synonymous_variant | 0.11 |
gyrA | 7585 | p.Ser95Thr | missense_variant | 1.0 |
gyrA | 7859 | c.558A>G | synonymous_variant | 0.11 |
gyrA | 7862 | c.561C>G | synonymous_variant | 0.11 |
gyrA | 9304 | p.Gly668Asp | missense_variant | 1.0 |
fgd1 | 491742 | c.960T>C | synonymous_variant | 1.0 |
rpoB | 759746 | c.-61C>T | upstream_gene_variant | 1.0 |
rpoB | 760263 | p.Met153Leu | missense_variant | 0.12 |
rpoB | 760266 | p.Met154Leu | missense_variant | 0.12 |
rpoB | 760273 | p.Glu156Gly | missense_variant | 0.12 |
rpoB | 760298 | c.492G>C | synonymous_variant | 0.13 |
rpoB | 760310 | c.504G>C | synonymous_variant | 0.13 |
rpoB | 760313 | c.507G>C | synonymous_variant | 0.14 |
rpoB | 760991 | c.1185G>C | synonymous_variant | 0.14 |
rpoB | 760997 | c.1191G>C | synonymous_variant | 0.13 |
rpoB | 761006 | c.1200C>G | synonymous_variant | 0.12 |
rpoB | 761013 | p.Val403Ile | missense_variant | 0.12 |
rpoB | 761027 | c.1221A>G | synonymous_variant | 0.13 |
rpoB | 761036 | c.1230G>C | synonymous_variant | 0.14 |
rpoB | 761037 | c.1231T>C | synonymous_variant | 0.14 |
rpoB | 761046 | p.Ile414Val | missense_variant | 0.14 |
rpoB | 761051 | c.1245G>C | synonymous_variant | 0.15 |
rpoB | 761054 | c.1248G>C | synonymous_variant | 0.15 |
rpoB | 761057 | c.1251G>C | synonymous_variant | 0.17 |
rpoB | 761150 | c.1344A>C | synonymous_variant | 0.18 |
rpoB | 761162 | c.1356G>C | synonymous_variant | 0.15 |
rpoB | 761165 | c.1359G>C | synonymous_variant | 0.15 |
rpoB | 761171 | c.1365C>T | synonymous_variant | 0.15 |
rpoB | 761175 | c.1371_1372delGT | frameshift_variant | 0.16 |
rpoB | 761180 | c.1374_1375insGC | frameshift_variant | 0.15 |
rpoB | 761189 | c.1383T>C | synonymous_variant | 0.15 |
rpoB | 761195 | c.1389G>C | synonymous_variant | 0.15 |
rpoB | 761196 | p.Leu464Val | missense_variant | 0.16 |
rpoB | 761207 | c.1401C>T | synonymous_variant | 0.16 |
rpoB | 761213 | c.1407G>C | synonymous_variant | 0.14 |
rpoB | 761537 | c.1731C>G | synonymous_variant | 0.22 |
rpoB | 761555 | c.1749G>C | synonymous_variant | 0.25 |
rpoB | 761558 | c.1752C>G | synonymous_variant | 0.26 |
rpoB | 761562 | p.Ala586Ser | missense_variant | 0.27 |
rpoB | 761565 | p.Met587Leu | missense_variant | 0.26 |
rpoB | 761570 | c.1764T>C | synonymous_variant | 0.25 |
rpoB | 761579 | c.1773G>C | synonymous_variant | 0.28 |
rpoB | 761600 | c.1794T>C | synonymous_variant | 0.26 |
rpoB | 761603 | c.1797C>T | synonymous_variant | 0.26 |
rpoB | 761612 | c.1806G>T | synonymous_variant | 0.25 |
rpoB | 761615 | c.1809A>G | synonymous_variant | 0.24 |
rpoB | 761627 | c.1821C>T | synonymous_variant | 0.18 |
rpoC | 762434 | c.-936T>G | upstream_gene_variant | 1.0 |
rpoB | 762879 | p.Met1025Leu | missense_variant | 0.2 |
rpoC | 762896 | c.-474G>C | upstream_gene_variant | 0.26 |
rpoC | 762929 | c.-441G>C | upstream_gene_variant | 0.27 |
rpoC | 762932 | c.-438G>C | upstream_gene_variant | 0.27 |
rpoC | 762947 | c.-423C>G | upstream_gene_variant | 0.27 |
rpoC | 762962 | c.-408C>T | upstream_gene_variant | 0.23 |
rpoC | 763031 | c.-339T>C | upstream_gene_variant | 1.0 |
rpoC | 763052 | c.-318G>C | upstream_gene_variant | 0.12 |
rpoC | 763053 | c.-317T>C | upstream_gene_variant | 0.13 |
rpoC | 763058 | c.-312C>G | upstream_gene_variant | 0.18 |
rpoC | 763070 | c.-300T>C | upstream_gene_variant | 0.21 |
rpoB | 763075 | p.Thr1090Ile | missense_variant | 0.22 |
rpoC | 763094 | c.-276G>C | upstream_gene_variant | 0.22 |
rpoC | 763115 | c.-255T>C | upstream_gene_variant | 0.24 |
rpoB | 763126 | p.Pro1107Gln | missense_variant | 0.23 |
rpoC | 763148 | c.-222G>C | upstream_gene_variant | 0.16 |
rpoC | 763660 | c.291T>C | synonymous_variant | 0.16 |
rpoC | 763666 | c.297G>C | synonymous_variant | 0.18 |
rpoC | 763696 | c.327T>C | synonymous_variant | 0.24 |
rpoC | 763708 | c.339G>C | synonymous_variant | 0.27 |
rpoC | 763711 | c.342G>C | synonymous_variant | 0.27 |
rpoC | 763714 | c.345G>A | synonymous_variant | 0.26 |
rpoC | 763717 | c.348T>C | synonymous_variant | 0.28 |
rpoC | 763723 | c.354G>C | synonymous_variant | 0.29 |
rpoC | 763727 | p.Leu120Met | missense_variant | 0.27 |
rpoC | 763732 | c.363C>G | synonymous_variant | 0.28 |
rpoC | 763744 | c.375G>C | synonymous_variant | 0.25 |
rpoC | 763751 | p.Ile128Val | missense_variant | 0.2 |
rpoC | 763765 | c.396T>C | synonymous_variant | 0.16 |
rpoC | 764308 | c.939G>C | synonymous_variant | 0.19 |
rpoC | 764316 | p.Ala316Val | missense_variant | 0.19 |
rpoC | 764320 | c.951C>G | synonymous_variant | 0.22 |
rpoC | 764353 | c.984G>C | synonymous_variant | 0.29 |
rpoC | 764365 | c.996C>T | synonymous_variant | 0.32 |
rpoC | 764371 | c.1002G>C | synonymous_variant | 0.32 |
rpoC | 764380 | c.1011G>C | synonymous_variant | 0.36 |
rpoC | 764381 | c.1012_1013delTCinsAG | synonymous_variant | 0.36 |
rpoC | 764387 | c.1018T>C | synonymous_variant | 0.34 |
rpoC | 764405 | c.1036_1038delAGGinsCGC | synonymous_variant | 0.31 |
rpoC | 764428 | c.1059G>C | synonymous_variant | 0.15 |
rpoC | 764431 | c.1062G>C | synonymous_variant | 0.15 |
rpoC | 764432 | p.Lys355Arg | missense_variant | 0.15 |
rpoC | 764435 | c.1066_1068delAGGinsCGC | synonymous_variant | 0.14 |
rpoC | 764446 | c.1077T>C | synonymous_variant | 0.15 |
rpoC | 764449 | c.1080G>C | synonymous_variant | 0.15 |
rpoC | 764455 | c.1086G>C | synonymous_variant | 0.18 |
rpoC | 764458 | c.1089G>C | synonymous_variant | 0.18 |
rpoC | 764461 | c.1092A>G | synonymous_variant | 0.2 |
rpoC | 764470 | c.1101C>G | synonymous_variant | 0.23 |
rpoC | 764497 | c.1128A>G | synonymous_variant | 0.23 |
rpoC | 764498 | p.Ser377Ala | missense_variant | 0.24 |
rpoC | 764503 | c.1134G>C | synonymous_variant | 0.31 |
rpoC | 764509 | c.1140G>C | synonymous_variant | 0.33 |
rpoC | 764521 | c.1152T>C | synonymous_variant | 0.39 |
rpoC | 764533 | c.1164C>T | synonymous_variant | 0.43 |
rpoC | 764536 | c.1167G>T | synonymous_variant | 0.44 |
rpoC | 764548 | c.1179G>T | synonymous_variant | 0.45 |
rpoC | 764549 | p.Pro394Thr | missense_variant | 0.42 |
rpoC | 764561 | p.Pro398Ala | missense_variant | 0.45 |
rpoC | 764566 | c.1197C>G | synonymous_variant | 0.45 |
rpoC | 764575 | c.1206T>G | synonymous_variant | 0.41 |
rpoC | 764581 | c.1212T>C | synonymous_variant | 0.43 |
rpoC | 764582 | p.Leu405Met | missense_variant | 0.42 |
rpoC | 764611 | c.1242G>C | synonymous_variant | 0.49 |
rpoC | 764632 | c.1263T>C | synonymous_variant | 0.4 |
rpoC | 764635 | c.1266C>G | synonymous_variant | 0.39 |
rpoC | 764650 | c.1281G>T | synonymous_variant | 0.41 |
rpoC | 764660 | p.Val431Ile | missense_variant | 0.36 |
rpoC | 764677 | c.1308C>G | synonymous_variant | 0.35 |
rpoC | 764683 | c.1314G>C | synonymous_variant | 0.3 |
rpoC | 764692 | c.1323C>T | synonymous_variant | 0.28 |
rpoC | 764705 | p.Leu446Ala | missense_variant | 0.17 |
rpoC | 764911 | c.1542A>G | synonymous_variant | 0.12 |
rpoC | 764912 | p.Met515Leu | missense_variant | 0.11 |
rpoC | 764917 | c.1548G>C | synonymous_variant | 0.14 |
rpoC | 764923 | c.1554A>G | synonymous_variant | 0.14 |
rpoC | 764935 | c.1566T>C | synonymous_variant | 0.16 |
rpoC | 764948 | c.1579_1581delTTGinsCTC | synonymous_variant | 0.17 |
rpoC | 764953 | c.1584G>C | synonymous_variant | 0.17 |
rpoC | 764956 | c.1587T>C | synonymous_variant | 0.18 |
rpoC | 764958 | p.Glu530Ala | missense_variant | 0.18 |
rpoC | 764968 | c.1599T>C | synonymous_variant | 0.2 |
rpoC | 766075 | c.2706C>G | synonymous_variant | 1.0 |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 1.0 |
mmpL5 | 776100 | p.Thr794Ile | missense_variant | 1.0 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
rpsL | 781760 | c.201T>C | synonymous_variant | 0.13 |
rpsL | 781794 | p.Met79Leu | missense_variant | 0.15 |
rpsL | 781802 | c.243G>C | synonymous_variant | 0.16 |
rpsL | 781805 | c.246G>C | synonymous_variant | 0.16 |
rpsL | 781808 | c.249C>T | synonymous_variant | 0.15 |
rpsL | 781811 | c.252C>A | synonymous_variant | 0.16 |
rpsL | 781817 | c.258G>T | synonymous_variant | 0.15 |
rpsL | 781829 | c.270G>C | synonymous_variant | 0.12 |
rpsL | 781832 | c.273T>C | synonymous_variant | 0.13 |
rpsL | 781838 | c.279G>C | synonymous_variant | 0.12 |
rpsL | 781841 | c.282C>T | synonymous_variant | 0.12 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
rrs | 1472123 | n.278A>T | non_coding_transcript_exon_variant | 0.4 |
rrs | 1472150 | n.305T>A | non_coding_transcript_exon_variant | 0.38 |
rrs | 1472172 | n.327T>C | non_coding_transcript_exon_variant | 0.57 |
rrs | 1472240 | n.395G>A | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472251 | n.406G>A | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472256 | n.411T>C | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472581 | n.736A>C | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472606 | n.761C>G | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472616 | n.771G>A | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472623 | n.778A>C | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472645 | n.800G>C | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472655 | n.810G>T | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472660 | n.815T>A | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472666 | n.821G>T | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472714 | n.869A>T | non_coding_transcript_exon_variant | 0.67 |
rrs | 1472767 | n.922G>A | non_coding_transcript_exon_variant | 0.67 |
rrs | 1472790 | n.945T>C | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472982 | n.1137G>A | non_coding_transcript_exon_variant | 0.6 |
rrs | 1472987 | n.1142G>A | non_coding_transcript_exon_variant | 0.6 |
rrs | 1472990 | n.1145A>G | non_coding_transcript_exon_variant | 0.6 |
rrs | 1472993 | n.1148G>T | non_coding_transcript_exon_variant | 0.67 |
rrs | 1473035 | n.1190G>A | non_coding_transcript_exon_variant | 0.57 |
rrs | 1473055 | n.1210C>T | non_coding_transcript_exon_variant | 0.43 |
rrs | 1473056 | n.1211A>T | non_coding_transcript_exon_variant | 0.5 |
rrs | 1473066 | n.1221A>G | non_coding_transcript_exon_variant | 0.5 |
rrs | 1473097 | n.1252G>A | non_coding_transcript_exon_variant | 0.42 |
rrs | 1473100 | n.1255G>A | non_coding_transcript_exon_variant | 0.36 |
rrs | 1473104 | n.1259C>T | non_coding_transcript_exon_variant | 0.36 |
rrs | 1473105 | n.1260G>A | non_coding_transcript_exon_variant | 0.36 |
rrs | 1473110 | n.1265T>G | non_coding_transcript_exon_variant | 0.33 |
rrs | 1473111 | n.1266A>G | non_coding_transcript_exon_variant | 0.33 |
rrs | 1473121 | n.1276T>C | non_coding_transcript_exon_variant | 0.38 |
rrs | 1473122 | n.1277T>A | non_coding_transcript_exon_variant | 0.38 |
rrs | 1473134 | n.1289T>C | non_coding_transcript_exon_variant | 0.54 |
rrs | 1473145 | n.1300C>T | non_coding_transcript_exon_variant | 0.47 |
rrs | 1473147 | n.1302G>A | non_coding_transcript_exon_variant | 0.5 |
rrs | 1473164 | n.1319C>T | non_coding_transcript_exon_variant | 0.46 |
rrs | 1473166 | n.1321G>A | non_coding_transcript_exon_variant | 0.5 |
rrs | 1473226 | n.1381C>T | non_coding_transcript_exon_variant | 0.64 |
rrs | 1473269 | n.1424C>T | non_coding_transcript_exon_variant | 0.5 |
rrs | 1473276 | n.1431A>G | non_coding_transcript_exon_variant | 0.5 |
rrs | 1473283 | n.1438T>C | non_coding_transcript_exon_variant | 0.46 |
rrs | 1473290 | n.1445C>T | non_coding_transcript_exon_variant | 0.43 |
rrs | 1473291 | n.1446_1447insT | non_coding_transcript_exon_variant | 0.43 |
rrs | 1473301 | n.1456T>C | non_coding_transcript_exon_variant | 0.44 |
rrs | 1473319 | n.1474C>T | non_coding_transcript_exon_variant | 0.43 |
rrs | 1473320 | n.1475G>A | non_coding_transcript_exon_variant | 0.43 |
rrs | 1473324 | n.1479G>A | non_coding_transcript_exon_variant | 0.43 |
rrl | 1474201 | n.544T>C | non_coding_transcript_exon_variant | 1.0 |
rrl | 1474202 | n.545T>A | non_coding_transcript_exon_variant | 1.0 |
rrl | 1474218 | n.561T>A | non_coding_transcript_exon_variant | 1.0 |
rrl | 1474249 | n.592G>T | non_coding_transcript_exon_variant | 0.75 |
rrl | 1474265 | n.608G>T | non_coding_transcript_exon_variant | 0.67 |
rrl | 1474488 | n.831G>C | non_coding_transcript_exon_variant | 0.25 |
rrl | 1474496 | n.839C>A | non_coding_transcript_exon_variant | 0.25 |
rrl | 1474497 | n.840G>C | non_coding_transcript_exon_variant | 0.25 |
rrl | 1474506 | n.849C>G | non_coding_transcript_exon_variant | 0.33 |
rrl | 1474507 | n.850G>T | non_coding_transcript_exon_variant | 0.33 |
rrl | 1474516 | n.859C>G | non_coding_transcript_exon_variant | 0.4 |
rrl | 1474537 | n.880G>A | non_coding_transcript_exon_variant | 0.43 |
rrl | 1474558 | n.901G>A | non_coding_transcript_exon_variant | 0.5 |
rrl | 1474583 | n.926C>T | non_coding_transcript_exon_variant | 0.8 |
rrl | 1474601 | n.944C>T | non_coding_transcript_exon_variant | 0.8 |
rrl | 1474632 | n.975G>T | non_coding_transcript_exon_variant | 1.0 |
rrl | 1474636 | n.979A>T | non_coding_transcript_exon_variant | 1.0 |
rrl | 1474637 | n.980C>T | non_coding_transcript_exon_variant | 1.0 |
rrl | 1474638 | n.981C>G | non_coding_transcript_exon_variant | 1.0 |
rrl | 1474639 | n.982G>C | non_coding_transcript_exon_variant | 1.0 |
rrl | 1474800 | n.1143T>C | non_coding_transcript_exon_variant | 1.0 |
rrl | 1474823 | n.1166C>G | non_coding_transcript_exon_variant | 1.0 |
rrl | 1474827 | n.1170C>T | non_coding_transcript_exon_variant | 0.67 |
rrl | 1474830 | n.1173A>T | non_coding_transcript_exon_variant | 0.67 |
rrl | 1474831 | n.1174A>C | non_coding_transcript_exon_variant | 0.67 |
rrl | 1474832 | n.1175A>T | non_coding_transcript_exon_variant | 0.67 |
rrl | 1475753 | n.2096C>G | non_coding_transcript_exon_variant | 1.0 |
rrl | 1475775 | n.2118G>T | non_coding_transcript_exon_variant | 1.0 |
rrl | 1475881 | n.2224T>C | non_coding_transcript_exon_variant | 0.78 |
rrl | 1475896 | n.2239A>G | non_coding_transcript_exon_variant | 0.6 |
rrl | 1475897 | n.2240T>C | non_coding_transcript_exon_variant | 0.6 |
rrl | 1475898 | n.2241A>G | non_coding_transcript_exon_variant | 0.6 |
rrl | 1475899 | n.2242G>A | non_coding_transcript_exon_variant | 0.64 |
rrl | 1475943 | n.2286G>A | non_coding_transcript_exon_variant | 0.64 |
rrl | 1475952 | n.2295A>G | non_coding_transcript_exon_variant | 0.56 |
rrl | 1475963 | n.2306G>T | non_coding_transcript_exon_variant | 0.38 |
rrl | 1475970 | n.2313C>T | non_coding_transcript_exon_variant | 0.3 |
rrl | 1475977 | n.2320A>G | non_coding_transcript_exon_variant | 0.27 |
rrl | 1475988 | n.2331A>G | non_coding_transcript_exon_variant | 0.4 |
rrl | 1475997 | n.2340A>G | non_coding_transcript_exon_variant | 0.38 |
rrl | 1475998 | n.2341C>T | non_coding_transcript_exon_variant | 0.38 |
rrl | 1476001 | n.2344T>C | non_coding_transcript_exon_variant | 0.33 |
rrl | 1476131 | n.2474C>T | non_coding_transcript_exon_variant | 0.62 |
rrl | 1476160 | n.2503T>C | non_coding_transcript_exon_variant | 0.75 |
rrl | 1476165 | n.2508T>A | non_coding_transcript_exon_variant | 0.75 |
rrl | 1476200 | n.2543A>T | non_coding_transcript_exon_variant | 0.75 |
rrl | 1476201 | n.2544C>T | non_coding_transcript_exon_variant | 0.75 |
rrl | 1476224 | n.2567A>G | non_coding_transcript_exon_variant | 0.67 |
rrl | 1476245 | n.2588C>T | non_coding_transcript_exon_variant | 0.5 |
rrl | 1476359 | n.2702C>G | non_coding_transcript_exon_variant | 0.33 |
rrl | 1476381 | n.2724G>C | non_coding_transcript_exon_variant | 0.33 |
rrl | 1476428 | n.2771C>T | non_coding_transcript_exon_variant | 0.71 |
rrl | 1476466 | n.2809C>T | non_coding_transcript_exon_variant | 0.71 |
rrl | 1476506 | n.2849T>C | non_coding_transcript_exon_variant | 0.6 |
rrl | 1476515 | n.2858C>T | non_coding_transcript_exon_variant | 0.6 |
rrl | 1476524 | n.2867C>A | non_coding_transcript_exon_variant | 0.33 |
rrl | 1476525 | n.2868A>G | non_coding_transcript_exon_variant | 0.4 |
rpsA | 1833709 | c.168C>G | synonymous_variant | 0.12 |
rpsA | 1833721 | c.180A>G | synonymous_variant | 0.11 |
rpsA | 1833727 | c.186G>C | synonymous_variant | 0.11 |
rpsA | 1833734 | p.Ala65Ser | missense_variant | 0.12 |
rpsA | 1833769 | c.228C>G | synonymous_variant | 0.12 |
rpsA | 1833790 | c.249T>C | synonymous_variant | 0.12 |
rpsA | 1833856 | c.315A>G | synonymous_variant | 0.12 |
rpsA | 1833859 | c.318C>G | synonymous_variant | 0.13 |
rpsA | 1833874 | c.333T>C | synonymous_variant | 0.16 |
rpsA | 1833884 | p.Thr115Asp | missense_variant | 0.13 |
rpsA | 1833887 | p.Ile116Val | missense_variant | 0.13 |
rpsA | 1833893 | p.Ala118Lys | missense_variant | 0.13 |
rpsA | 1833896 | p.Leu119Ile | missense_variant | 0.17 |
rpsA | 1833907 | p.Lys122Asn | missense_variant | 0.17 |
rpsA | 1833912 | p.Glu124Gly | missense_variant | 0.17 |
rpsA | 1833915 | p.Ala125Val | missense_variant | 0.17 |
rpsA | 1833921 | p.Lys127Thr | missense_variant | 0.16 |
rpsA | 1833928 | c.387G>C | synonymous_variant | 0.17 |
rpsA | 1834384 | c.843A>G | synonymous_variant | 0.15 |
rpsA | 1834395 | p.Arg285Gln | missense_variant | 0.2 |
rpsA | 1834397 | p.His286Val | missense_variant | 0.2 |
rpsA | 1834411 | c.870T>C | synonymous_variant | 0.33 |
rpsA | 1834423 | c.882G>T | synonymous_variant | 0.37 |
rpsA | 1834427 | p.Ile296Val | missense_variant | 0.38 |
rpsA | 1834431 | p.Val297Ala | missense_variant | 0.37 |
rpsA | 1834451 | c.910_912delTTGinsCTC | synonymous_variant | 0.39 |
rpsA | 1834456 | c.915T>C | synonymous_variant | 0.42 |
rpsA | 1834465 | c.924T>C | synonymous_variant | 0.42 |
rpsA | 1834468 | c.927A>G | synonymous_variant | 0.42 |
rpsA | 1834474 | c.933C>G | synonymous_variant | 0.42 |
rpsA | 1834482 | p.Glu314Ala | missense_variant | 0.36 |
rpsA | 1834486 | p.Glu315Asp | missense_variant | 0.32 |
rpsA | 1834489 | c.948T>C | synonymous_variant | 0.33 |
rpsA | 1834501 | c.960G>C | synonymous_variant | 0.22 |
rpsA | 1834513 | c.972C>G | synonymous_variant | 0.13 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
katG | 2154724 | p.Arg463Leu | missense_variant | 1.0 |
PPE35 | 2167926 | p.Leu896Ser | missense_variant | 1.0 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
pncA | 2289047 | c.195C>T | synonymous_variant | 1.0 |
pncA | 2289365 | c.-125delC | upstream_gene_variant | 1.0 |
ahpC | 2726105 | c.-88G>A | upstream_gene_variant | 1.0 |
folC | 2746452 | p.Gly383Ser | missense_variant | 1.0 |
ald | 3086788 | c.-32T>C | upstream_gene_variant | 1.0 |
fprA | 3473996 | c.-11_-10insA | upstream_gene_variant | 0.98 |
clpC1 | 4040024 | c.681A>G | synonymous_variant | 0.12 |
clpC1 | 4040033 | c.672G>C | synonymous_variant | 0.18 |
clpC1 | 4040063 | c.642G>C | synonymous_variant | 0.27 |
clpC1 | 4040066 | c.639G>C | synonymous_variant | 0.26 |
clpC1 | 4040069 | c.636G>C | synonymous_variant | 0.27 |
clpC1 | 4040083 | p.Thr208Ser | missense_variant | 0.3 |
clpC1 | 4040090 | c.615T>G | synonymous_variant | 0.31 |
clpC1 | 4040096 | p.Val203Ile | missense_variant | 0.28 |
clpC1 | 4040117 | c.588A>G | synonymous_variant | 0.25 |
clpC1 | 4040126 | c.579C>T | synonymous_variant | 0.2 |
clpC1 | 4040129 | c.576C>G | synonymous_variant | 0.16 |
embC | 4242075 | p.Arg738Gln | missense_variant | 1.0 |
embA | 4242643 | c.-590C>T | upstream_gene_variant | 1.0 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |
gid | 4407588 | c.615A>G | synonymous_variant | 1.0 |