Rv0668 - c.1554A>G
Drug resistance types
44 Sensitive
19 RR-TB
171 HR-TB
15 MDR-TB
11 Pre-XDR-TB
0 XDR-TB
113 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage4.9 | 62 |
| 131 | |
| lineage4 | 46 |
| lineage3 | 14 |
| lineage4.8 | 3 |
| lineage4.1.1.3 | 2 |
| lineage3.1.2.1 | 3 |
| lineage4;lineage1.1.2 | 1 |
| lineage4.1.1 | 2 |
| lineage2.2.1 | 26 |
| lineage4.1.2.1 | 17 |
| lineage1.1.1 | 1 |
| lineage1.1 | 1 |
| lineage4.2.1.1 | 1 |
| lineage4.3.3 | 4 |
| La2 | 1 |
| lineage3.1 | 2 |
| lineage4.7 | 1 |
| lineage4.3.4.2.1 | 1 |
| lineage4.4.2 | 1 |
| lineage2.2 | 5 |
| La1 | 2 |
| lineage4;lineage3.1 | 1 |
| La1.8.1 | 7 |
| La1.2 | 1 |
| lineage4.9;La1.3 | 2 |
| La1.3 | 3 |
| lineage3.1.2 | 1 |
| lineage1.2.2.2 | 1 |
| lineage1.1.2 | 1 |
| lineage4.5;lineage2.2.1 | 1 |
| lineage4.6.1.1 | 1 |
| lineage4.3.4 | 2 |
| lineage4.1.2.1.1 | 1 |
| lineage4.3.2 | 1 |
| lineage6 | 1 |
| lineage4.6.2.2 | 2 |
| lineage3.1.2.2;lineage3.1.2.1 | 1 |
| La1.6 | 1 |
| lineage4.4.1.1 | 2 |
| lineage2.2.1.2 | 2 |
| lineage2.2.1.1 | 4 |
| lineage4.9;lineage2.2 | 1 |
| lineage4.5 | 1 |
| lineage1.2.1.2.1 | 1 |
| lineage4.4 | 1 |
| La1.7.1 | 1 |
| lineage1.2.1.2 | 1 |
| lineage4;lineage2.2 | 1 |
| lineage4.1 | 1 |
| lineage3;lineage2.1 | 1 |
| lineage2.1 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 373 |
Geographic prevalence
Country level data for this variant is available for 6 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | ERR4816322 | Other | lineage4.9 | None | ERR212123 | Other | None | ERR4817069 | RR-TB | None | ERR212125 | HR-TB | lineage4 | None | ERR4816470 | Other | lineage3 | None | ERR4816417 | Other | lineage4.9 | None | ERR212138 | HR-TB | lineage4 | None | ERR4817667 | HR-TB | lineage4.8 | None | ERR4816656 | HR-TB | None | ERR4815815 | Sensitive | lineage4 | None | SRR3675571 | HR-TB | None | ERR3275709 | HR-TB | lineage3 | nl | ERR216965 | HR-TB | lineage4.9 | None | ERR4816551 | HR-TB | lineage4.1.1.3 | None | ERR4816717 | RR-TB | lineage3.1.2.1 | None | ERR4816852 | Other | lineage4.9 | None | ERR4817692 | HR-TB | lineage4;lineage1.1.2 | None | ERR2513259 | Other | lineage3 | None | ERR4818110 | Sensitive | lineage4.9 | None | ERR2229143 | Other | lineage4.1.1 | None | ERR4819051 | Other | lineage4 | None | ERR1035162 | Other | None | ERR234659 | HR-TB | None | ERR2513229 | MDR-TB | lineage2.2.1 | None | ERR4818561 | HR-TB | lineage4 | None | ERR4818929 | HR-TB | None | ERR4818536 | Other | lineage4.9 | None | ERR2509673 | Other | lineage2.2.1 | None | SRR5341418 | Other | None | SRR5341373 | HR-TB | lineage4 | None | ERR3275215 | Other | lineage4.1.2.1 | nl | SRR5341400 | HR-TB | lineage4 | None | SRR5341412 | Pre-XDR-TB | lineage3 | None | ERR4819462 | Other | lineage4 | None | ERR4819314 | Other | lineage1.1.1 | None | SRR5341456 | Other | None | ERR4819546 | HR-TB | lineage3 | None | SAMN02414850 | Other | lineage4.1.2.1 | None | SRR5341432 | HR-TB | lineage4 | None | ERR4819623 | Sensitive | lineage4.9 | None | ERR1035138 | MDR-TB | None | SRR5341293 | HR-TB | lineage4 | None | SRR5341267 | Pre-XDR-TB | lineage3 | None | SRR5535933 | HR-TB | None | SRR5341313 | HR-TB | None | ERR6359082 | Other | lineage4.9 | None | SRR5341330 | HR-TB | None | ERR2693231 | Other | None | ERR4821811 | RR-TB | lineage4.9 | None | SRR5341470 | HR-TB | None | ERR2693239 | HR-TB | None | ERR2693230 | Other | None | ERR2693254 | Other | None | SRR5341315 | Sensitive | None | ERR2517489 | Sensitive | lineage4.1.2.1 | nl | SRR6046210 | Other | lineage4 | None | ERR4821053 | Other | lineage3 | None | ERR2693257 | Other | None | ERR278594 | HR-TB | None | ERR2660539 | Other | lineage4.9 | None | SRR6045359 | Sensitive | lineage4.9 | None | ERR4821276 | Other | lineage3 | None | SRR6045795 | HR-TB | lineage2.2.1 | None | SRR6046133 | HR-TB | None | SRR6044780 | Other | lineage4.9 | None | SRR6044835 | Sensitive | lineage4 | None | SRR6044876 | Sensitive | lineage4 | None | SRR6045952 | HR-TB | None | SRR6045053 | Other | None | SRR6045191 | Sensitive | lineage4.9 | None | SRR6045217 | Other | lineage4 | None | SRR6045233 | HR-TB | None | SRR6045555 | HR-TB | None | SRR6044890 | Other | lineage4.9 | None | SRR6044952 | RR-TB | lineage4.9 | None | SRR6045010 | Other | lineage4 | None | SRR6046046 | Other | None | ERR3275196 | Other | lineage2.2.1 | nl | SRR6325442 | HR-TB | None | SRR6046259 | Sensitive | lineage4.9 | None | SRR6046299 | HR-TB | None | SRR6325444 | HR-TB | None | SRR6046397 | Other | None | ERR2446118 | Other | lineage4.1.2.1 | nl | SRR6046225 | HR-TB | None | ERR2851356 | Sensitive | lineage4.9 | None | ERR2446563 | Other | lineage2.2.1 | nl | SRR9971270 | RR-TB | lineage2.2.1 | None | SRR6046482 | HR-TB | None | SRR6046492 | Other | None | SRR6046514 | HR-TB | None | SRR6325448 | HR-TB | None | SRR6046644 | HR-TB | None | SRR6325447 | HR-TB | None | SRR6046824 | HR-TB | None | SRR6397654 | HR-TB | lineage4.1.2.1 | None | ERR3077978 | Other | lineage1.1 | None | SRR6832178 | HR-TB | lineage4.2.1.1 | None | SRR6832644 | Other | lineage4.3.3 | None | ERR294266 | HR-TB | None | ERR323036 | HR-TB | None | ERR502524 | HR-TB | La2 | None | ERR5311099 | HR-TB | None | ERR5311090 | HR-TB | None | SRR6046594 | HR-TB | lineage4 | None | SRR6046834 | Sensitive | lineage4.9 | None | SRR6046878 | HR-TB | lineage4 | None | ERR502470 | RR-TB | lineage4.9 | None | SRR6831950 | Other | lineage4.3.3 | None | ERR294248 | HR-TB | None | SRR6832787 | RR-TB | lineage2.2.1 | None | ERR323034 | HR-TB | lineage3.1 | None | ERR502889 | Other | None | ERR5311081 | HR-TB | None | ERR323038 | HR-TB | None | SRR8217918 | HR-TB | None | SRR7496471 | Sensitive | None | SRR7496523 | Other | lineage4.7 | None | ERR067681 | HR-TB | None | SRR7535086 | Other | None | ERR323039 | HR-TB | None | ERR323045 | HR-TB | None | ERR323055 | HR-TB | None | ERR323053 | HR-TB | None | ERR323063 | HR-TB | None | ERR323044 | HR-TB | lineage4.3.4.2.1 | None | ERR323041 | HR-TB | None | ERR323054 | HR-TB | lineage3.1 | None | ERR323108 | HR-TB | lineage4 | None | DRR188519 | Other | lineage4.4.2 | None | ERR1023295 | HR-TB | lineage4.1.2.1 | None | ERR067712 | HR-TB | lineage4 | None | ERR1023525 | HR-TB | lineage4 | None | ERR1034634 | HR-TB | None | ERR1063855 | Other | lineage4 | None | ERR1063839 | HR-TB | lineage2.2 | None | ERR1063857 | HR-TB | None | ERR1063858 | HR-TB | None | ERR1063862 | HR-TB | None | ERR3283017 | HR-TB | None | ERR108125 | Pre-XDR-TB | lineage4.9 | None | ERR3283010 | Other | La1 | None | ERR1063859 | HR-TB | None | ERR133986 | HR-TB | None | ERR3283014 | HR-TB | None | ERR3283021 | HR-TB | None | ERR3283024 | Other | None | ERR3283028 | Other | None | ERR3283025 | HR-TB | None | ERR3283031 | HR-TB | None | ERR3283030 | HR-TB | lineage4.9 | None | ERR3283032 | HR-TB | None | ERR3283047 | HR-TB | None | ERR3283040 | HR-TB | None | ERR3283048 | HR-TB | lineage4.9 | None | ERR3283057 | HR-TB | lineage4 | None | ERR3439432 | Other | None | ERR405219 | HR-TB | lineage4;lineage3.1 | None | ERR3468488 | RR-TB | La1.8.1 | None | ERR3797016 | HR-TB | None | ERR3797015 | HR-TB | None | ERR3797047 | HR-TB | lineage4 | None | ERR3797044 | Other | None | ERR3797048 | HR-TB | None | ERR3797060 | Other | La1.8.1 | None | ERR3797063 | HR-TB | None | ERR3797073 | HR-TB | La1.8.1 | None | ERR3797064 | Sensitive | None | ERR3797082 | Other | lineage4.9 | None | ERR3797087 | Sensitive | lineage4 | None | ERR405209 | Sensitive | lineage4 | None | ERR3445504 | HR-TB | None | ERR3445503 | HR-TB | None | ERR3468544 | HR-TB | None | ERR3797019 | Other | La1.8.1 | None | ERR3797014 | Other | None | ERR3797017 | Other | None | ERR3797023 | HR-TB | La1.8.1 | None | ERR3797036 | HR-TB | None | ERR3797067 | Other | La1.8.1 | None | ERR3797065 | MDR-TB | lineage4 | None | ERR3797061 | Other | None | ERR3797080 | HR-TB | lineage4.9 | None | ERR3797079 | Sensitive | lineage4 | None | ERR3797081 | Sensitive | lineage4 | None | ERR3797083 | HR-TB | None | ERR3797086 | Other | lineage4.9 | None | ERR403298 | HR-TB | lineage4 | None | ERR4188350 | HR-TB | None | ERR4188247 | HR-TB | None | ERR4799478 | Pre-XDR-TB | lineage2.2.1 | None | ERR4596902 | HR-TB | lineage3 | None | ERR473323 | HR-TB | lineage4.9 | None | ERR4769419 | Other | lineage4.9 | None | ERR4769417 | Pre-XDR-TB | lineage4.9 | None | ERR4769418 | Other | La1.2 | None | ERR4769433 | Pre-XDR-TB | lineage4.9 | None | ERR4769444 | HR-TB | lineage4.9 | None | ERR4769450 | HR-TB | None | ERR4769493 | Pre-XDR-TB | lineage4.9;La1.3 | None | ERR4769508 | RR-TB | lineage4.9 | None | ERR4769514 | Other | La1.3 | None | ERR4769521 | HR-TB | None | ERR4769550 | Other | lineage4.9;La1.3 | None | ERR4769552 | Other | La1.3 | None | ERR4769555 | Other | La1.3 | None | ERR4797588 | MDR-TB | lineage3 | None | ERR4798262 | HR-TB | La1 | None | ERR4798504 | Other | lineage3 | None | ERR4798648 | HR-TB | lineage3.1.2 | None | ERR4799025 | Pre-XDR-TB | None | ERR4596910 | Sensitive | lineage4 | None | ERR473332 | Other | lineage4 | None | ERR4769442 | HR-TB | lineage4 | None | ERR4769452 | HR-TB | None | ERR4769457 | Other | lineage4.9 | None | ERR4769474 | HR-TB | lineage4 | None | ERR4769530 | RR-TB | lineage4.9 | None | ERR4796577 | MDR-TB | None | ERR4797201 | Other | lineage1.2.2.2 | None | ERR4798406 | HR-TB | None | ERR4798823 | HR-TB | lineage4 | None | ERR4799513 | HR-TB | lineage2.2 | None | ERR4800102 | Sensitive | lineage3.1.2.1 | None | ERR4800257 | Sensitive | lineage1.1.2 | None | ERR5908228 | Other | lineage4.3.3 | None | ERR4811035 | Pre-XDR-TB | lineage4.5;lineage2.2.1 | None | ERR4800527 | MDR-TB | lineage2.2.1 | None | ERR4810624 | HR-TB | lineage2.2 | None | ERR6358755 | Other | lineage4.6.1.1 | None | ERR6358951 | HR-TB | lineage4 | None | ERR6358837 | HR-TB | None | ERR6359066 | HR-TB | lineage4 | None | ERR6359045 | HR-TB | None | ERR736848 | HR-TB | None | ERR6359074 | HR-TB | lineage4.9 | None | ERR6866807 | HR-TB | lineage4 | None | ERR736817 | HR-TB | lineage4.3.4 | None | ERR736835 | HR-TB | None | ERR6866125 | Sensitive | lineage4.1.2.1 | None | ERR9119669 | HR-TB | None | ERR736856 | HR-TB | lineage4 | None | ERR736865 | HR-TB | None | ERR736875 | HR-TB | lineage4 | None | ERR760733 | MDR-TB | lineage4.1.2.1.1 | None | ERR772255 | MDR-TB | lineage4.3.2 | None | ERR7821163 | Other | lineage2.2.1 | None | ERR8976043 | HR-TB | None | ERR9119096 | Other | lineage4.3.3 | None | SRR10315751 | MDR-TB | lineage4.8 | None | ERR9786986 | HR-TB | lineage4.1.2.1 | None | ERR9787030 | Sensitive | lineage6 | None | SRR10315551 | Sensitive | lineage2.2.1 | None | ERR9786164 | RR-TB | lineage4.1.1.3 | None | ERR9786444 | Sensitive | lineage4.8 | None | ERR9786528 | Sensitive | lineage4.6.2.2 | None | ERR987722 | HR-TB | None | ERR987729 | HR-TB | lineage3.1.2.2;lineage3.1.2.1 | None | ERR9896144 | Other | lineage3 | None | SRR1049675 | HR-TB | lineage2.2.1 | None | SRR1049674 | HR-TB | lineage2.2.1 | None | SRR1140724 | HR-TB | lineage2.2.1 | None | SRR1062919 | HR-TB | lineage2.2.1 | None | SRR10993951 | RR-TB | La1.6 | None | SRR1173767 | HR-TB | lineage4.4.1.1 | None | SRR11462861 | Other | La1.8.1 | None | SRR1162864 | HR-TB | lineage4.1.2.1 | None | SRR1163221 | HR-TB | lineage4.1.2.1 | None | SRR1165584 | Other | lineage4.1.2.1 | None | SRR1169313 | MDR-TB | lineage4.1.1 | None | SRR1172146 | Sensitive | lineage4.9 | None | SRR1172885 | HR-TB | lineage4.9 | None | SRR1162740 | Other | lineage4.1.2.1 | None | SRR1165423 | Other | lineage4.1.2.1 | None | SRR1165506 | Other | lineage4.1.2.1 | None | SRR1166821 | HR-TB | lineage4.1.2.1 | None | SRR1172310 | HR-TB | None | SRR1172796 | Sensitive | lineage2.2.1.2 | None | SRR1173453 | Other | lineage4.4.1.1 | None | SRR1175052 | HR-TB | lineage4.9 | None | SRR1174897 | HR-TB | None | SRR1175474 | HR-TB | lineage4.9 | None | SRR1175127 | Sensitive | lineage2.2.1.2 | None | SRR1175473 | Other | lineage4.9 | None | SRR1175472 | MDR-TB | lineage4 | None | SRR1180172 | Other | lineage2.2.1 | None | SRR1180148 | Sensitive | lineage4.9 | None | SRR1180147 | Other | lineage2.2.1.1 | None | SRR1180345 | Other | lineage4.9 | None | SRR1180270 | Other | lineage2.2.1 | None | SRR1180410 | Sensitive | lineage4.9;lineage2.2 | None | SRR1180355 | Sensitive | lineage4.9 | None | SRR1180399 | Sensitive | lineage4.9 | None | SRR1181091 | Other | lineage2.2.1.1 | None | SRR1180420 | Sensitive | lineage4.9 | None | SRR1181351 | Sensitive | lineage4.9 | None | SRR1181251 | Other | lineage2.2.1 | None | SRR1183106 | Other | lineage2.2.1.1 | None | SRR1183144 | Other | lineage2.2.1 | None | SRR1183145 | Other | lineage2.2.1 | None | SRR13861296 | Sensitive | lineage4.9 | None | SRR1184021 | Sensitive | lineage4.9 | None | SRR1184024 | Other | lineage2.2.1.1 | None | SRR13423544 | Other | lineage4.5 | None | SRR13837615 | Sensitive | lineage4.9 | None | SRR13861168 | RR-TB | lineage4.9 | None | SRR13861251 | RR-TB | lineage4.9 | None | SRR11972425 | Pre-XDR-TB | lineage2.2.1 | None | SRR13861413 | Sensitive | lineage4.9 | None | SRR13861305 | Other | lineage4.9 | None | SRR13861434 | RR-TB | lineage4.9 | None | SRR13861528 | HR-TB | lineage4.9 | None | SRR13861500 | RR-TB | lineage4.9 | None | SRR13861646 | Other | lineage4.9 | None | SRR13861596 | Other | lineage4.9 | None | SRR14782405 | HR-TB | None | SRR16156775 | Other | lineage4.9 | None | SRR1510066 | Other | lineage1.2.1.2.1 | None | SRR16156697 | MDR-TB | lineage2.2.1 | None | SRR16627752 | RR-TB | lineage4.4 | None | SRR16156832 | RR-TB | None | SRR16157123 | Other | lineage4.9 | None | SRR1640750 | HR-TB | None | SRR21677886 | Sensitive | lineage4.9 | None | SRR17658565 | Other | lineage3 | None | SRR17832802 | HR-TB | lineage3 | None | SRR1792478 | HR-TB | La1.7.1 | None | SRR18002891 | MDR-TB | lineage2.2.1 | None | SRR20632814 | Sensitive | lineage4 | None | SRR20969731 | Other | lineage2.2.1 | None | SRR20969708 | HR-TB | lineage2.2 | None | SRR20970016 | Other | lineage2.2 | None | SRR20969475 | Other | lineage1.2.1.2 | None | SRR22175249 | Pre-XDR-TB | lineage2.2.1 | None | SRR22424787 | Sensitive | lineage4.9 | None | ERR176779 | HR-TB | None | ERR11082350 | MDR-TB | lineage4.6.2.2 | None | SRR8692887 | Other | None | SRR8692800 | Other | lineage4 | None | SRR8692863 | Other | lineage4;lineage2.2 | None | SRR8692791 | Other | lineage4.9 | None | ERR176778 | HR-TB | None | SRR3675464 | HR-TB | lineage4.1 | None | SRR6325445 | HR-TB | None | ERR1035239 | HR-TB | None | ERR4815310 | Other | None | ERR158583 | HR-TB | None | SRR3675482 | HR-TB | None | ERR161033 | HR-TB | None | SAMN02585910 | Other | lineage2.2.1 | None | SRR3675486 | HR-TB | None | ERR161039 | Sensitive | lineage4.3.4 | None | SRR3675502 | Other | None | ERR4814536 | MDR-TB | lineage3;lineage2.1 | None | SRR3675312 | HR-TB | lineage4 | None | ERR181744 | HR-TB | None | SRR3675270 | HR-TB | None | ERR4815550 | Other | lineage4 | None | ERR176651 | HR-TB | None | ERR4814639 | HR-TB | lineage4 | None | SRR3675234 | Other | None | ERR181824 | HR-TB | lineage4 | None | ERR4815010 | Sensitive | lineage4.1.2.1 | None | ERR181887 | HR-TB | None | SRR3675383 | HR-TB | None | ERR4815022 | Other | lineage3.1.2.1 | None | ERR176740 | HR-TB | None | SRR3675510 | Other | None | ERR2027233 | RR-TB | lineage4.1.2.1 | None | SRR3675545 | HR-TB | None | SRR3675550 | Other | None | SRR5341422 | HR-TB | lineage2.1 | None | SRR3675558 | HR-TB | None |
|---|
