Run ID: SRR6832178
Sample name:
Date: 2025-02-11T09:23:33.661376
Number of reads: 1584680
Percentage reads mapped: 76.13
Median coverage: 34.0
Strain: lineage4.2.1.1
Spoligotype:
Drug-resistance: HR-TB
Lineage | Family | RDs | Frequency |
---|---|---|---|
lineage4.2 | Euro-American | None | 0.94 |
lineage4 | Euro-American | None | 0.97 |
lineage4.2.1.1 | Euro-American (TUR) | None | 0.98 |
lineage4.2.1 | Euro-American (TUR) | None | 0.99 |
Drug | Resistance | Supporting mutations | WHO confidence | Comment |
---|---|---|---|---|
rifampicin | ||||
isoniazid | katG | p.Ser315Thr | Assoc w R | High-level resistance |
ethambutol | embB | p.His312Arg | Mutation from literature | |
pyrazinamide | ||||
streptomycin | rpsL | p.Lys88Arg | Assoc w R | |
fluoroquinolones | ||||
moxifloxacin | ||||
ofloxacin | ||||
levofloxacin | ||||
ciprofloxacin | ||||
aminoglycosides | ||||
amikacin | ||||
capreomycin | ||||
kanamycin | ||||
cycloserine | ||||
ethionamide | ||||
clofazimine | ||||
para-aminosalicylic_acid | folC | p.Glu153Ala | Mutation from literature | |
delamanid | ||||
bedaquiline | ||||
linezolid |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs | Confidence | Comment |
---|---|---|---|---|---|---|---|
rpsL | 781822 | p.Lys88Arg | missense_variant | 0.88 | streptomycin | Assoc w R | |
katG | 2155168 | p.Ser315Thr | missense_variant | 1.0 | isoniazid | Assoc w R | High-level resistance |
folC | 2747141 | p.Glu153Ala | missense_variant | 1.0 | para-aminosalicylic_acid | Mutation from literature | |
embB | 4247448 | p.His312Arg | missense_variant | 0.2 | ethambutol | Mutation from literature |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs | Confidence |
---|---|---|---|---|---|---|
dnaA | 1404 | c.1404T>C | synonymous_variant | 0.25 | isoniazid | |
dnaA | 1407 | c.1407T>C | synonymous_variant | 0.24 | isoniazid | |
dnaA | 1413 | c.1413A>C | synonymous_variant | 0.3 | isoniazid | |
dnaA | 1416 | c.1416C>G | synonymous_variant | 0.3 | isoniazid | |
dnaA | 1441 | c.1441C>T | synonymous_variant | 0.31 | isoniazid | |
dnaA | 1449 | c.1449G>A | synonymous_variant | 0.26 | isoniazid | |
dnaA | 1458 | c.1458G>A | synonymous_variant | 0.31 | isoniazid | |
dnaA | 1464 | c.1464T>C | synonymous_variant | 0.31 | isoniazid | |
dnaA | 1467 | c.1467G>A | synonymous_variant | 0.31 | isoniazid | Not assoc w R - Interim |
dnaA | 1473 | c.1473T>C | synonymous_variant | 0.21 | isoniazid | Not assoc w R - Interim |
gyrB | 5284 | c.45G>A | synonymous_variant | 0.24 | levofloxacin | |
moxifloxacin | ||||||
gyrB | 5287 | c.48T>C | synonymous_variant | 0.26 | levofloxacin | |
moxifloxacin | ||||||
gyrB | 5293 | c.54C>G | synonymous_variant | 0.3 | levofloxacin | |
moxifloxacin | ||||||
gyrB | 5302 | c.63A>G | synonymous_variant | 0.29 | levofloxacin | |
moxifloxacin | ||||||
gyrB | 5305 | c.66G>A | synonymous_variant | 0.3 | levofloxacin | |
moxifloxacin | ||||||
gyrB | 5308 | c.69G>A | synonymous_variant | 0.3 | levofloxacin | |
moxifloxacin | ||||||
gyrB | 5341 | c.102T>C | synonymous_variant | 0.28 | levofloxacin | |
moxifloxacin | ||||||
gyrB | 5359 | c.120C>T | synonymous_variant | 0.25 | levofloxacin | Not assoc w R - Interim |
moxifloxacin | Not assoc w R - Interim | |||||
gyrB | 5363 | c.124_126delTTAinsCTG | synonymous_variant | 0.21 | levofloxacin | |
moxifloxacin | ||||||
gyrB | 5377 | c.138T>C | synonymous_variant | 0.28 | levofloxacin | Not assoc w R - Interim |
moxifloxacin | Not assoc w R - Interim | |||||
gyrB | 5851 | c.612G>C | synonymous_variant | 0.22 | levofloxacin | |
moxifloxacin | ||||||
gyrB | 6145 | c.906C>T | synonymous_variant | 0.23 | levofloxacin | |
moxifloxacin | ||||||
gyrB | 6214 | c.975G>C | synonymous_variant | 0.22 | levofloxacin | |
moxifloxacin | ||||||
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 | levofloxacin | Not assoc w R |
moxifloxacin | Not assoc w R | |||||
gyrA | 7585 | p.Ser95Thr | missense_variant | 1.0 | levofloxacin | Not assoc w R |
moxifloxacin | Not assoc w R | |||||
gyrA | 7595 | c.294C>G | synonymous_variant | 0.29 | levofloxacin | |
moxifloxacin | ||||||
gyrA | 7601 | c.300C>G | synonymous_variant | 0.26 | levofloxacin | Not assoc w R - Interim |
moxifloxacin | Not assoc w R - Interim | |||||
gyrA | 7619 | c.318C>T | synonymous_variant | 0.23 | levofloxacin | |
moxifloxacin | ||||||
gyrA | 7622 | c.321C>T | synonymous_variant | 0.23 | levofloxacin | |
moxifloxacin | ||||||
gyrA | 7631 | c.330G>C | synonymous_variant | 0.21 | levofloxacin | |
moxifloxacin | ||||||
gyrA | 8315 | c.1014G>A | synonymous_variant | 0.17 | levofloxacin | |
moxifloxacin | ||||||
gyrA | 8519 | c.1218A>C | synonymous_variant | 0.15 | levofloxacin | |
moxifloxacin | ||||||
gyrA | 8531 | c.1230G>A | synonymous_variant | 0.19 | levofloxacin | Not assoc w R - Interim |
moxifloxacin | Not assoc w R - Interim | |||||
gyrA | 8810 | c.1509A>C | synonymous_variant | 0.22 | levofloxacin | |
moxifloxacin | ||||||
gyrA | 8813 | c.1512C>T | synonymous_variant | 0.23 | levofloxacin | Not assoc w R - Interim |
moxifloxacin | ||||||
gyrA | 8897 | c.1596T>C | synonymous_variant | 0.16 | levofloxacin | Not assoc w R - Interim |
moxifloxacin | Not assoc w R - Interim | |||||
gyrA | 8903 | c.1602T>C | synonymous_variant | 0.19 | levofloxacin | Not assoc w R - Interim |
moxifloxacin | Not assoc w R - Interim | |||||
gyrA | 8981 | c.1680G>C | synonymous_variant | 0.2 | levofloxacin | Not assoc w R - Interim |
moxifloxacin | Not assoc w R - Interim | |||||
gyrA | 8987 | c.1686C>G | synonymous_variant | 0.19 | levofloxacin | |
moxifloxacin | ||||||
gyrA | 8998 | p.Leu566Trp | missense_variant | 0.18 | levofloxacin | Uncertain significance |
moxifloxacin | Uncertain significance | |||||
gyrA | 9003 | c.1702C>T | synonymous_variant | 0.18 | levofloxacin | |
moxifloxacin | ||||||
gyrA | 9017 | c.1716C>T | synonymous_variant | 0.18 | levofloxacin | |
moxifloxacin | ||||||
gyrA | 9023 | c.1722A>C | synonymous_variant | 0.19 | levofloxacin | Not assoc w R - Interim |
moxifloxacin | Not assoc w R - Interim | |||||
gyrA | 9029 | c.1728T>G | synonymous_variant | 0.18 | levofloxacin | |
moxifloxacin | ||||||
gyrA | 9050 | p.Asp583Glu | missense_variant | 0.18 | levofloxacin | Uncertain significance |
moxifloxacin | Uncertain significance | |||||
gyrA | 9065 | c.1764C>G | synonymous_variant | 0.16 | levofloxacin | |
moxifloxacin | ||||||
gyrA | 9068 | c.1767G>C | synonymous_variant | 0.15 | levofloxacin | |
moxifloxacin | ||||||
gyrA | 9242 | c.1941A>C | synonymous_variant | 0.17 | levofloxacin | |
moxifloxacin | ||||||
gyrA | 9252 | p.Val651Ile | missense_variant | 0.18 | levofloxacin | Uncertain significance |
moxifloxacin | Uncertain significance | |||||
gyrA | 9257 | c.1956C>T | synonymous_variant | 0.18 | levofloxacin | |
moxifloxacin | ||||||
gyrA | 9284 | c.1983T>G | synonymous_variant | 0.2 | levofloxacin | |
moxifloxacin | ||||||
gyrA | 9296 | c.1995T>C | synonymous_variant | 0.18 | levofloxacin | Not assoc w R - Interim |
moxifloxacin | Not assoc w R - Interim | |||||
gyrA | 9304 | p.Gly668Asp | missense_variant | 1.0 | levofloxacin | Not assoc w R |
moxifloxacin | Not assoc w R | |||||
gyrA | 9626 | c.2325T>C | synonymous_variant | 0.16 | levofloxacin | |
moxifloxacin | ||||||
gyrA | 9629 | c.2328C>A | synonymous_variant | 0.16 | levofloxacin | Not assoc w R - Interim |
moxifloxacin | ||||||
gyrA | 9630 | p.Val777Ile | missense_variant | 0.17 | levofloxacin | |
moxifloxacin | ||||||
gyrA | 9635 | c.2334T>C | synonymous_variant | 0.18 | levofloxacin | |
moxifloxacin | ||||||
gyrA | 9644 | c.2343T>C | synonymous_variant | 0.2 | levofloxacin | |
moxifloxacin | ||||||
gyrA | 9650 | c.2349G>C | synonymous_variant | 0.21 | levofloxacin | |
moxifloxacin | ||||||
gyrA | 9656 | c.2355C>G | synonymous_variant | 0.23 | levofloxacin | Not assoc w R - Interim |
moxifloxacin | Not assoc w R - Interim | |||||
gyrA | 9659 | c.2358C>G | synonymous_variant | 0.24 | levofloxacin | |
moxifloxacin | ||||||
gyrA | 9668 | c.2367C>A | synonymous_variant | 0.21 | levofloxacin | |
moxifloxacin | ||||||
fgd1 | 490851 | c.69A>T | synonymous_variant | 0.3 | pretomanid | |
delamanid | ||||||
clofazimine | ||||||
fgd1 | 490853 | p.Ala24Gly | missense_variant | 0.3 | pretomanid | |
delamanid | ||||||
clofazimine | ||||||
fgd1 | 491601 | c.819T>C | synonymous_variant | 0.24 | pretomanid | |
delamanid | ||||||
clofazimine | ||||||
fgd1 | 491604 | c.822G>C | synonymous_variant | 0.24 | pretomanid | |
delamanid | ||||||
clofazimine | ||||||
fgd1 | 491610 | c.828A>G | synonymous_variant | 0.23 | pretomanid | |
delamanid | ||||||
clofazimine | ||||||
fgd1 | 491616 | c.834A>G | synonymous_variant | 0.23 | pretomanid | |
delamanid | ||||||
clofazimine | ||||||
fgd1 | 491628 | c.846G>A | synonymous_variant | 0.18 | pretomanid | |
delamanid | ||||||
clofazimine | ||||||
mshA | 575767 | c.420G>A | synonymous_variant | 0.19 | isoniazid | |
ethionamide | ||||||
mshA | 575770 | c.423G>C | synonymous_variant | 0.19 | isoniazid | |
ethionamide | ||||||
mshA | 575772 | p.Val142Ala | missense_variant | 0.18 | isoniazid | |
ethionamide | ||||||
mshA | 575785 | c.438T>C | synonymous_variant | 0.19 | isoniazid | |
ethionamide | ||||||
ccsA | 620245 | p.Leu119Met | missense_variant | 0.18 | kanamycin | |
capreomycin | ||||||
amikacin | ||||||
ccsA | 620256 | c.366C>G | synonymous_variant | 0.14 | kanamycin | |
capreomycin | ||||||
amikacin | ||||||
ccsA | 620257 | p.Ile123Val | missense_variant | 0.15 | kanamycin | |
capreomycin | ||||||
amikacin | ||||||
ccsA | 620271 | c.381C>G | synonymous_variant | 0.14 | kanamycin | |
capreomycin | ||||||
amikacin | ||||||
ccsA | 620325 | c.435G>T | synonymous_variant | 0.15 | kanamycin | |
capreomycin | ||||||
amikacin | ||||||
ccsA | 620622 | c.732G>C | synonymous_variant | 0.15 | kanamycin | |
capreomycin | ||||||
amikacin | ||||||
ccsA | 620631 | c.741T>G | synonymous_variant | 0.15 | kanamycin | |
capreomycin | ||||||
amikacin | ||||||
Rv0565c | 657686 | c.-216C>A | upstream_gene_variant | 0.24 | ethionamide | |
Rv0565c | 657689 | c.-220_-219delCAinsAG | upstream_gene_variant | 0.24 | ethionamide | |
Rv0565c | 657701 | c.-231C>G | upstream_gene_variant | 0.26 | ethionamide | |
Rv0565c | 657734 | c.-264T>C | upstream_gene_variant | 0.28 | ethionamide | |
hadA | 731738 | c.-192G>T | upstream_gene_variant | 0.24 | isoniazid | |
hadA | 731753 | c.-177A>G | upstream_gene_variant | 0.26 | isoniazid | |
hadA | 731774 | c.-156T>C | upstream_gene_variant | 0.26 | isoniazid | |
hadA | 731795 | c.-135C>T | upstream_gene_variant | 0.24 | isoniazid | |
nusG | 734421 | c.168A>G | synonymous_variant | 0.16 | rifampicin | |
nusG | 734481 | c.228C>T | synonymous_variant | 0.14 | rifampicin | |
nusG | 734580 | c.327T>C | synonymous_variant | 0.14 | rifampicin | Not assoc w R - Interim |
nusG | 734625 | c.372T>C | synonymous_variant | 0.19 | rifampicin | |
nusG | 734631 | c.378G>A | synonymous_variant | 0.19 | rifampicin | |
nusG | 734634 | c.381G>C | synonymous_variant | 0.19 | rifampicin | |
mmaA3 | 737277 | c.873G>C | synonymous_variant | 0.15 | isoniazid | |
mmaA3 | 737280 | c.870G>A | synonymous_variant | 0.15 | isoniazid | |
mmaA3 | 737307 | p.Met281Ile | missense_variant | 0.2 | isoniazid | |
mmaA3 | 737310 | c.840A>G | synonymous_variant | 0.22 | isoniazid | |
mmaA3 | 737316 | c.834G>A | synonymous_variant | 0.22 | isoniazid | |
mmaA3 | 737340 | c.810A>G | synonymous_variant | 0.21 | isoniazid | |
mmaA3 | 737349 | c.801G>C | synonymous_variant | 0.2 | isoniazid | |
mmaA3 | 737358 | c.792A>C | synonymous_variant | 0.22 | isoniazid | |
mmaA3 | 738100 | p.Asp17Ala | missense_variant | 0.32 | isoniazid | |
rpoB | 759606 | c.-201T>C | upstream_gene_variant | 0.24 | rifampicin | |
rpoB | 759635 | c.-172C>T | upstream_gene_variant | 0.25 | rifampicin | |
rpoB | 759644 | c.-163T>A | upstream_gene_variant | 0.26 | rifampicin | |
rpoB | 759647 | c.-160T>C | upstream_gene_variant | 0.27 | rifampicin | Uncertain significance |
rpoB | 759661 | c.-146G>C | upstream_gene_variant | 0.27 | rifampicin | |
rpoB | 760181 | c.375T>C | synonymous_variant | 0.14 | rifampicin | Not assoc w R - Interim |
rpoB | 760184 | c.378A>G | synonymous_variant | 0.14 | rifampicin | Not assoc w R - Interim |
rpoB | 760193 | c.387C>G | synonymous_variant | 0.17 | rifampicin | |
rpoB | 760196 | c.390C>G | synonymous_variant | 0.18 | rifampicin | Not assoc w R - Interim |
rpoB | 760202 | c.396G>A | synonymous_variant | 0.18 | rifampicin | Not assoc w R - Interim |
rpoB | 760223 | c.417T>C | synonymous_variant | 0.21 | rifampicin | |
rpoB | 760235 | c.429T>C | synonymous_variant | 0.25 | rifampicin | Not assoc w R - Interim |
rpoB | 760256 | c.450C>T | synonymous_variant | 0.25 | rifampicin | Not assoc w R - Interim |
rpoB | 760298 | c.492G>C | synonymous_variant | 0.19 | rifampicin | Not assoc w R - Interim |
rpoB | 760328 | c.522G>C | synonymous_variant | 0.16 | rifampicin | |
rpoB | 760343 | c.537G>C | synonymous_variant | 0.15 | rifampicin | |
rpoB | 760361 | c.555T>C | synonymous_variant | 0.17 | rifampicin | Not assoc w R - Interim |
rpoB | 760919 | c.1113C>G | synonymous_variant | 0.17 | rifampicin | |
rpoB | 760920 | c.1114C>T | synonymous_variant | 0.16 | rifampicin | |
rpoB | 761015 | c.1209G>C | synonymous_variant | 0.26 | rifampicin | Not assoc w R - Interim |
rpoB | 761027 | c.1221A>G | synonymous_variant | 0.35 | rifampicin | Not assoc w R - Interim |
rpoB | 761036 | c.1230G>A | synonymous_variant | 0.34 | rifampicin | |
rpoB | 761037 | c.1231T>C | synonymous_variant | 0.34 | rifampicin | Not assoc w R - Interim |
rpoB | 761051 | c.1245G>C | synonymous_variant | 0.4 | rifampicin | Not assoc w R - Interim |
rpoB | 761066 | c.1260G>C | synonymous_variant | 0.4 | rifampicin | |
rpoB | 761201 | c.1395G>A | synonymous_variant | 0.24 | rifampicin | |
rpoB | 761204 | c.1398C>G | synonymous_variant | 0.25 | rifampicin | |
rpoB | 761207 | c.1401C>T | synonymous_variant | 0.24 | rifampicin | |
rpoB | 761234 | c.1428G>C | synonymous_variant | 0.25 | rifampicin | Not assoc w R - Interim |
rpoB | 761249 | c.1443A>G | synonymous_variant | 0.27 | rifampicin | Not assoc w R - Interim |
rpoB | 761255 | c.1449T>G | synonymous_variant | 0.26 | rifampicin | Not assoc w R - Interim |
rpoB | 761261 | c.1455G>T | synonymous_variant | 0.24 | rifampicin | Not assoc w R - Interim |
rpoB | 761273 | c.1467T>C | synonymous_variant | 0.19 | rifampicin | Not assoc w R - Interim |
rpoB | 761537 | c.1731C>G | synonymous_variant | 0.16 | rifampicin | Not assoc w R - Interim |
rpoB | 761561 | c.1755C>G | synonymous_variant | 0.2 | rifampicin | |
rpoB | 761564 | c.1758G>C | synonymous_variant | 0.2 | rifampicin | Not assoc w R - Interim |
rpoB | 761573 | c.1767C>G | synonymous_variant | 0.18 | rifampicin | Not assoc w R - Interim |
rpoB | 761579 | c.1773G>C | synonymous_variant | 0.18 | rifampicin | Not assoc w R - Interim |
rpoB | 761600 | c.1794T>G | synonymous_variant | 0.2 | rifampicin | |
rpoB | 761603 | c.1797C>T | synonymous_variant | 0.21 | rifampicin | |
rpoB | 761606 | c.1800C>G | synonymous_variant | 0.2 | rifampicin | |
rpoB | 761612 | c.1806G>T | synonymous_variant | 0.19 | rifampicin | Not assoc w R - Interim |
rpoB | 761615 | c.1809A>C | synonymous_variant | 0.19 | rifampicin | Not assoc w R - Interim |
rpoB | 762053 | c.2247T>C | synonymous_variant | 0.26 | rifampicin | Not assoc w R - Interim |
rpoB | 762065 | c.2259T>C | synonymous_variant | 0.27 | rifampicin | Not assoc w R - Interim |
rpoB | 762071 | c.2265C>T | synonymous_variant | 0.27 | rifampicin | |
rpoB | 762083 | c.2277T>C | synonymous_variant | 0.2 | rifampicin | Not assoc w R - Interim |
rpoB | 762086 | c.2280G>C | synonymous_variant | 0.23 | rifampicin | Not assoc w R - Interim |
rpoB | 762114 | p.Ile770Val | missense_variant | 0.24 | rifampicin | Uncertain significance |
rpoB | 762119 | c.2313C>T | synonymous_variant | 0.23 | rifampicin | |
rpoB | 762131 | c.2325C>G | synonymous_variant | 0.22 | rifampicin | |
rpoB | 762134 | c.2328C>G | synonymous_variant | 0.22 | rifampicin | Not assoc w R - Interim |
rpoC | 762518 | c.-852C>G | upstream_gene_variant | 0.27 | rifampicin | |
rpoB | 762857 | c.3051C>G | synonymous_variant | 0.24 | rifampicin | Not assoc w R - Interim |
rpoC | 762860 | c.-510G>T | upstream_gene_variant | 0.23 | rifampicin | |
rpoB | 762899 | c.3093G>C | synonymous_variant | 0.19 | rifampicin | Not assoc w R - Interim |
rpoB | 762929 | c.3123G>C | synonymous_variant | 0.21 | rifampicin | Not assoc w R - Interim |
rpoB | 763028 | c.3222T>C | synonymous_variant | 0.15 | rifampicin | Not assoc w R - Interim |
rpoB | 763031 | c.3225T>G | synonymous_variant | 0.16 | rifampicin | Not assoc w R - Interim |
rpoB | 763034 | c.3228C>G | synonymous_variant | 0.15 | rifampicin | Not assoc w R - Interim |
rpoB | 763040 | c.3234C>G | synonymous_variant | 0.18 | rifampicin | Not assoc w R - Interim |
rpoC | 763468 | c.99G>C | synonymous_variant | 0.35 | rifampicin | Not assoc w R - Interim |
rpoC | 763486 | c.117T>C | synonymous_variant | 0.38 | rifampicin | Not assoc w R - Interim |
rpoC | 763505 | c.136C>T | synonymous_variant | 0.35 | rifampicin | |
rpoC | 763600 | c.231C>T | synonymous_variant | 0.32 | rifampicin | Not assoc w R - Interim |
rpoC | 763606 | c.237C>T | synonymous_variant | 0.32 | rifampicin | |
rpoC | 763618 | c.249C>A | synonymous_variant | 0.28 | rifampicin | |
rpoC | 763633 | c.264T>C | synonymous_variant | 0.3 | rifampicin | Not assoc w R - Interim |
rpoC | 763636 | c.267T>G | synonymous_variant | 0.29 | rifampicin | |
rpoC | 763639 | c.270G>A | synonymous_variant | 0.25 | rifampicin | |
rpoC | 763658 | c.289_291delCTTinsTTG | synonymous_variant | 0.23 | rifampicin | |
rpoC | 763666 | c.297G>A | synonymous_variant | 0.24 | rifampicin | |
rpoC | 764005 | c.636G>C | synonymous_variant | 0.3 | rifampicin | Not assoc w R - Interim |
rpoC | 764011 | c.642T>C | synonymous_variant | 0.27 | rifampicin | |
rpoC | 764024 | c.655T>C | synonymous_variant | 0.25 | rifampicin | |
rpoC | 764040 | p.Ser224Asn | missense_variant | 0.24 | rifampicin | |
rpoC | 764044 | c.675T>C | synonymous_variant | 0.25 | rifampicin | |
rpoC | 764140 | c.771C>T | synonymous_variant | 0.24 | rifampicin | Not assoc w R - Interim |
rpoC | 764161 | c.792G>C | synonymous_variant | 0.31 | rifampicin | |
rpoC | 764203 | c.834G>C | synonymous_variant | 0.29 | rifampicin | |
rpoC | 764206 | p.Asp279Glu | missense_variant | 0.27 | rifampicin | |
rpoC | 764217 | p.Asn283Ser | missense_variant | 0.26 | rifampicin | |
rpoC | 764681 | c.1312C>T | synonymous_variant | 0.2 | rifampicin | |
rpoC | 764746 | c.1377G>T | synonymous_variant | 0.29 | rifampicin | Not assoc w R - Interim |
rpoC | 764752 | c.1383G>C | synonymous_variant | 0.26 | rifampicin | Not assoc w R - Interim |
rpoC | 764755 | c.1386C>T | synonymous_variant | 0.24 | rifampicin | |
rpoC | 764764 | c.1395T>C | synonymous_variant | 0.23 | rifampicin | Not assoc w R - Interim |
rpoC | 764767 | c.1398G>C | synonymous_variant | 0.24 | rifampicin | |
rpoC | 764815 | c.1446A>G | synonymous_variant | 0.19 | rifampicin | Not assoc w R - Interim |
rpoC | 764830 | c.1461C>G | synonymous_variant | 0.17 | rifampicin | |
rpoC | 764833 | c.1464A>G | synonymous_variant | 0.15 | rifampicin | |
rpoC | 764872 | c.1503A>G | synonymous_variant | 0.19 | rifampicin | Not assoc w R - Interim |
rpoC | 764875 | c.1506C>A | synonymous_variant | 0.19 | rifampicin | Not assoc w R - Interim |
rpoC | 764888 | c.1519_1521delTTGinsCTC | synonymous_variant | 0.2 | rifampicin | |
rpoC | 764902 | c.1533C>G | synonymous_variant | 0.24 | rifampicin | |
rpoC | 764911 | c.1542A>G | synonymous_variant | 0.24 | rifampicin | |
rpoC | 764918 | p.Val517Ile | missense_variant | 0.2 | rifampicin | |
rpoC | 764923 | c.1554A>G | synonymous_variant | 0.2 | rifampicin | Not assoc w R - Interim |
rpoC | 764932 | c.1563C>G | synonymous_variant | 0.2 | rifampicin | |
rpoC | 764948 | c.1579T>C | synonymous_variant | 0.2 | rifampicin | Not assoc w R - Interim |
rpoC | 765395 | c.2026C>T | synonymous_variant | 0.31 | rifampicin | |
rpoC | 765405 | p.Leu679Pro | missense_variant | 0.27 | rifampicin | Uncertain significance |
rpoC | 765409 | c.2040T>C | synonymous_variant | 0.23 | rifampicin | |
rpoC | 765430 | c.2061G>A | synonymous_variant | 0.29 | rifampicin | |
rpoC | 765445 | c.2076G>T | synonymous_variant | 0.24 | rifampicin | Not assoc w R - Interim |
rpoC | 765451 | c.2082C>G | synonymous_variant | 0.23 | rifampicin | |
rpoC | 765452 | p.Ala695Ser | missense_variant | 0.23 | rifampicin | |
rpoC | 765478 | c.2109T>C | synonymous_variant | 0.21 | rifampicin | Not assoc w R - Interim |
rpoC | 765496 | c.2127C>G | synonymous_variant | 0.16 | rifampicin | |
rpoC | 765499 | c.2130C>G | synonymous_variant | 0.17 | rifampicin | Not assoc w R - Interim |
rpoC | 765526 | c.2157C>G | synonymous_variant | 0.16 | rifampicin | Not assoc w R - Interim |
rpoC | 765541 | c.2172C>A | synonymous_variant | 0.17 | rifampicin | |
rpoC | 765547 | c.2178C>A | synonymous_variant | 0.19 | rifampicin | |
rpoC | 765553 | c.2184C>T | synonymous_variant | 0.17 | rifampicin | Not assoc w R - Interim |
rpoC | 765556 | c.2187G>C | synonymous_variant | 0.17 | rifampicin | |
rpoC | 765562 | c.2193G>C | synonymous_variant | 0.18 | rifampicin | |
rpoC | 765826 | c.2457T>A | synonymous_variant | 0.26 | rifampicin | |
rpoC | 765835 | c.2466C>T | synonymous_variant | 0.26 | rifampicin | Not assoc w R - Interim |
rpoC | 765850 | c.2481G>C | synonymous_variant | 0.31 | rifampicin | Not assoc w R - Interim |
rpoC | 765883 | c.2514C>G | synonymous_variant | 0.36 | rifampicin | |
rpoC | 765886 | c.2517C>G | synonymous_variant | 0.38 | rifampicin | |
rpoC | 765892 | c.2523T>C | synonymous_variant | 0.35 | rifampicin | Not assoc w R - Interim |
rpoC | 765910 | c.2541G>C | synonymous_variant | 0.33 | rifampicin | Not assoc w R - Interim |
rpoC | 765934 | c.2565C>T | synonymous_variant | 0.38 | rifampicin | |
rpoC | 765952 | c.2583G>C | synonymous_variant | 0.37 | rifampicin | |
rpoC | 765967 | c.2598C>T | synonymous_variant | 0.33 | rifampicin | Not assoc w R - Interim |
rpoC | 765979 | c.2610C>G | synonymous_variant | 0.31 | rifampicin | Not assoc w R - Interim |
rpoC | 765994 | c.2625A>T | synonymous_variant | 0.33 | rifampicin | Not assoc w R - Interim |
rpoC | 765997 | c.2628T>C | synonymous_variant | 0.35 | rifampicin | |
rpoC | 766300 | c.2931C>G | synonymous_variant | 0.15 | rifampicin | |
rpoC | 766306 | c.2937C>T | synonymous_variant | 0.15 | rifampicin | Not assoc w R - Interim |
rpoC | 766312 | c.2943T>C | synonymous_variant | 0.17 | rifampicin | |
rpoC | 766315 | c.2946C>G | synonymous_variant | 0.16 | rifampicin | |
rpoC | 766426 | c.3057C>T | synonymous_variant | 0.24 | rifampicin | |
rpoC | 766483 | c.3114G>C | synonymous_variant | 0.24 | rifampicin | |
rpoC | 766486 | c.3117A>G | synonymous_variant | 0.25 | rifampicin | |
rpoC | 766492 | c.3123T>C | synonymous_variant | 0.26 | rifampicin | |
rpoC | 766495 | c.3126C>T | synonymous_variant | 0.27 | rifampicin | Not assoc w R - Interim |
rpoC | 766519 | c.3150C>A | synonymous_variant | 0.26 | rifampicin | |
rpoC | 766528 | c.3159T>C | synonymous_variant | 0.19 | rifampicin | |
rpoC | 766534 | c.3165C>G | synonymous_variant | 0.17 | rifampicin | |
rpoC | 766537 | c.3168G>A | synonymous_variant | 0.17 | rifampicin | |
rpoC | 766543 | c.3174C>T | synonymous_variant | 0.17 | rifampicin | |
rpoC | 766549 | c.3180G>T | synonymous_variant | 0.15 | rifampicin | |
rpoC | 766672 | c.3303T>C | synonymous_variant | 0.17 | rifampicin | |
rpoC | 766681 | c.3312C>T | synonymous_variant | 0.18 | rifampicin | |
rpoC | 766684 | c.3315C>G | synonymous_variant | 0.19 | rifampicin | |
rpoC | 766700 | c.3331C>T | synonymous_variant | 0.24 | rifampicin | |
rpoC | 766714 | c.3345G>C | synonymous_variant | 0.22 | rifampicin | |
rpoC | 766726 | c.3357T>C | synonymous_variant | 0.21 | rifampicin | |
rpoC | 766747 | c.3378C>T | synonymous_variant | 0.26 | rifampicin | |
rpoC | 766765 | c.3396A>C | synonymous_variant | 0.29 | rifampicin | Not assoc w R - Interim |
rpoC | 766774 | c.3405T>C | synonymous_variant | 0.27 | rifampicin | |
rpoC | 766801 | c.3432C>T | synonymous_variant | 0.22 | rifampicin | |
rpoC | 766804 | c.3435A>G | synonymous_variant | 0.22 | rifampicin | Not assoc w R - Interim |
rpoC | 766843 | c.3474T>G | synonymous_variant | 0.17 | rifampicin | Not assoc w R - Interim |
rpoC | 766864 | c.3495G>C | synonymous_variant | 0.18 | rifampicin | |
rpoC | 767062 | c.3693C>A | synonymous_variant | 0.23 | rifampicin | |
rpoC | 767119 | c.3750A>G | synonymous_variant | 0.28 | rifampicin | Not assoc w R - Interim |
rpoC | 767167 | c.3798C>T | synonymous_variant | 0.26 | rifampicin | |
rpoC | 767180 | p.Ala1271Gln | missense_variant | 0.26 | rifampicin | |
rpoC | 767185 | c.3816G>T | synonymous_variant | 0.26 | rifampicin | |
rpoC | 767191 | c.3822C>G | synonymous_variant | 0.25 | rifampicin | Not assoc w R - Interim |
rpoC | 767200 | c.3831G>A | synonymous_variant | 0.24 | rifampicin | |
rpoC | 767206 | c.3837C>A | synonymous_variant | 0.22 | rifampicin | |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 1.0 | bedaquiline | Not assoc w R - Interim |
clofazimine | Not assoc w R | |||||
mmpL5 | 776802 | p.Met560Thr | missense_variant | 1.0 | bedaquiline | Uncertain significance |
clofazimine | Uncertain significance | |||||
mmpL5 | 777451 | p.Val344Leu | missense_variant | 1.0 | bedaquiline | Uncertain significance |
clofazimine | Uncertain significance | |||||
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 | streptomycin | Not assoc w R |
rpsL | 781658 | c.99A>G | synonymous_variant | 0.17 | streptomycin | |
rpsL | 781664 | c.105C>T | synonymous_variant | 0.16 | streptomycin | |
rpsL | 781667 | c.108C>G | synonymous_variant | 0.16 | streptomycin | |
rpsL | 781709 | c.150G>C | synonymous_variant | 0.2 | streptomycin | Not assoc w R - Interim |
rpsL | 781715 | c.156T>C | synonymous_variant | 0.2 | streptomycin | |
rpsL | 781718 | c.159C>G | synonymous_variant | 0.2 | streptomycin | |
rpsL | 781721 | c.162C>G | synonymous_variant | 0.21 | streptomycin | |
rpsL | 781728 | c.169T>C | synonymous_variant | 0.22 | streptomycin | |
rpsL | 781742 | c.183C>T | synonymous_variant | 0.19 | streptomycin | |
rpsL | 781760 | c.201T>C | synonymous_variant | 0.18 | streptomycin | |
rpsL | 781916 | c.357T>C | synonymous_variant | 0.16 | streptomycin | |
rpsL | 781929 | p.Gly124Ser | missense_variant | 0.18 | streptomycin | Uncertain significance |
rplC | 800204 | c.-605T>C | upstream_gene_variant | 0.91 | linezolid | |
rplC | 800537 | c.-272C>T | upstream_gene_variant | 0.23 | linezolid | |
rplC | 800540 | c.-269T>C | upstream_gene_variant | 0.24 | linezolid | |
rplC | 800567 | c.-242A>G | upstream_gene_variant | 0.26 | linezolid | |
rplC | 800579 | c.-230C>T | upstream_gene_variant | 0.21 | linezolid | |
rplC | 800582 | c.-227C>G | upstream_gene_variant | 0.22 | linezolid | |
rplC | 800600 | c.-209G>T | upstream_gene_variant | 0.24 | linezolid | |
rplC | 800693 | c.-116A>C | upstream_gene_variant | 0.23 | linezolid | |
rplC | 800714 | c.-95C>T | upstream_gene_variant | 0.16 | linezolid | |
rplC | 800715 | c.-94A>C | upstream_gene_variant | 0.16 | linezolid | |
rplC | 800720 | c.-89T>C | upstream_gene_variant | 0.17 | linezolid | |
rplC | 800723 | c.-86C>G | upstream_gene_variant | 0.17 | linezolid | |
rplC | 800735 | c.-74C>G | upstream_gene_variant | 0.2 | linezolid | |
rplC | 800738 | c.-71T>C | upstream_gene_variant | 0.2 | linezolid | |
rplC | 800744 | c.-65G>C | upstream_gene_variant | 0.21 | linezolid | |
rplC | 800817 | c.9A>C | synonymous_variant | 0.19 | linezolid | |
Rv1129c | 1254582 | c.-48A>C | upstream_gene_variant | 1.0 | levofloxacin | Not assoc w R |
moxifloxacin | Not assoc w R | |||||
isoniazid | Not assoc w R | |||||
rifampicin | Not assoc w R | |||||
fbiC | 1303578 | c.648G>A | synonymous_variant | 0.2 | pretomanid | |
delamanid | ||||||
clofazimine | ||||||
fbiC | 1303584 | c.654C>A | synonymous_variant | 0.2 | pretomanid | |
delamanid | ||||||
clofazimine | ||||||
fbiC | 1303731 | c.801A>G | synonymous_variant | 0.15 | pretomanid | |
delamanid | ||||||
clofazimine | ||||||
fbiC | 1303732 | p.Ser268Thr | missense_variant | 0.15 | pretomanid | |
delamanid | ||||||
clofazimine | ||||||
fbiC | 1303737 | c.807G>A | synonymous_variant | 0.16 | pretomanid | |
delamanid | ||||||
clofazimine | ||||||
fbiC | 1303752 | c.822A>G | synonymous_variant | 0.16 | pretomanid | |
delamanid | Not assoc w R - Interim | |||||
clofazimine | Not assoc w R - Interim | |||||
fbiC | 1303768 | p.Ser280Ala | missense_variant | 0.19 | pretomanid | |
delamanid | ||||||
clofazimine | ||||||
fbiC | 1304049 | c.1119T>G | synonymous_variant | 0.21 | pretomanid | |
delamanid | ||||||
clofazimine | ||||||
fbiC | 1304055 | p.Asp375Glu | missense_variant | 0.22 | pretomanid | |
delamanid | ||||||
clofazimine | ||||||
fbiC | 1304058 | p.Glu376Asp | missense_variant | 0.21 | pretomanid | |
delamanid | Uncertain significance | |||||
clofazimine | ||||||
fbiC | 1304059 | c.1129C>T | synonymous_variant | 0.21 | pretomanid | |
delamanid | ||||||
clofazimine | ||||||
fbiC | 1304064 | c.1134G>C | synonymous_variant | 0.21 | pretomanid | |
delamanid | ||||||
clofazimine | ||||||
fbiC | 1304067 | c.1137G>C | synonymous_variant | 0.21 | pretomanid | |
delamanid | ||||||
clofazimine | ||||||
fbiC | 1304074 | p.Ala382Ser | missense_variant | 0.2 | pretomanid | |
delamanid | ||||||
clofazimine | ||||||
fbiC | 1304079 | c.1149A>G | synonymous_variant | 0.21 | pretomanid | |
delamanid | ||||||
clofazimine | ||||||
fbiC | 1304091 | c.1161C>T | synonymous_variant | 0.21 | pretomanid | |
delamanid | ||||||
clofazimine | ||||||
fbiC | 1304092 | p.Met388Leu | missense_variant | 0.21 | pretomanid | |
delamanid | ||||||
clofazimine | ||||||
fbiC | 1304625 | c.1695C>T | synonymous_variant | 0.2 | pretomanid | |
delamanid | ||||||
clofazimine | ||||||
fbiC | 1304628 | c.1698G>C | synonymous_variant | 0.24 | pretomanid | |
delamanid | ||||||
clofazimine | ||||||
fbiC | 1304649 | c.1719C>T | synonymous_variant | 0.22 | pretomanid | |
delamanid | ||||||
clofazimine | ||||||
fbiC | 1304784 | c.1854T>G | synonymous_variant | 0.18 | pretomanid | |
delamanid | ||||||
clofazimine | ||||||
fbiC | 1304787 | c.1857T>C | synonymous_variant | 0.18 | pretomanid | |
delamanid | ||||||
clofazimine | ||||||
fbiC | 1304790 | c.1860C>A | synonymous_variant | 0.18 | pretomanid | |
delamanid | ||||||
clofazimine | ||||||
fbiC | 1304799 | c.1869G>C | synonymous_variant | 0.19 | pretomanid | |
delamanid | ||||||
clofazimine | ||||||
fbiC | 1305126 | c.2196T>C | synonymous_variant | 0.16 | pretomanid | |
delamanid | Not assoc w R - Interim | |||||
clofazimine | Not assoc w R - Interim | |||||
sigE | 1364839 | c.427T>C | synonymous_variant | 0.15 | pyrazinamide | |
sigE | 1364844 | c.432C>T | synonymous_variant | 0.15 | pyrazinamide | |
sigE | 1364866 | p.Ala152Thr | missense_variant | 0.16 | pyrazinamide | |
atpE | 1461101 | c.57T>C | synonymous_variant | 0.21 | bedaquiline | |
atpE | 1461107 | c.63C>G | synonymous_variant | 0.2 | bedaquiline | |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 | kanamycin | |
capreomycin | ||||||
streptomycin | ||||||
amikacin | ||||||
rrs | 1471984 | n.139T>A | non_coding_transcript_exon_variant | 0.17 | kanamycin | |
capreomycin | ||||||
streptomycin | ||||||
amikacin | ||||||
rrs | 1471985 | n.140T>C | non_coding_transcript_exon_variant | 0.17 | kanamycin | Uncertain significance |
capreomycin | Uncertain significance | |||||
streptomycin | Uncertain significance | |||||
amikacin | Uncertain significance | |||||
rrl | 1473877 | n.220G>A | non_coding_transcript_exon_variant | 0.29 | capreomycin | |
linezolid | ||||||
rrl | 1473887 | n.230T>A | non_coding_transcript_exon_variant | 0.31 | capreomycin | |
linezolid | ||||||
rrl | 1473888 | n.231T>A | non_coding_transcript_exon_variant | 0.31 | capreomycin | Uncertain significance |
linezolid | Uncertain significance | |||||
rrl | 1473898 | n.241C>T | non_coding_transcript_exon_variant | 0.3 | capreomycin | Uncertain significance |
linezolid | Uncertain significance | |||||
rrl | 1474009 | n.352A>G | non_coding_transcript_exon_variant | 0.32 | capreomycin | |
linezolid | ||||||
rrl | 1474034 | n.377G>A | non_coding_transcript_exon_variant | 0.32 | capreomycin | |
linezolid | ||||||
rrl | 1474083 | n.426C>T | non_coding_transcript_exon_variant | 0.35 | capreomycin | Uncertain significance |
linezolid | ||||||
rrl | 1474103 | n.446A>T | non_coding_transcript_exon_variant | 0.29 | capreomycin | |
linezolid | ||||||
rrl | 1474140 | n.483C>T | non_coding_transcript_exon_variant | 0.25 | capreomycin | Uncertain significance |
linezolid | Uncertain significance | |||||
rrl | 1474151 | n.494C>T | non_coding_transcript_exon_variant | 0.23 | capreomycin | Uncertain significance |
linezolid | Uncertain significance | |||||
rrl | 1474376 | n.719T>C | non_coding_transcript_exon_variant | 0.24 | capreomycin | |
linezolid | ||||||
rrl | 1474632 | n.975G>T | non_coding_transcript_exon_variant | 0.26 | capreomycin | Uncertain significance |
linezolid | Uncertain significance | |||||
rrl | 1474639 | n.982G>A | non_coding_transcript_exon_variant | 0.23 | capreomycin | Uncertain significance |
linezolid | Uncertain significance | |||||
rrl | 1474717 | n.1060A>T | non_coding_transcript_exon_variant | 0.36 | capreomycin | Uncertain significance |
linezolid | Uncertain significance | |||||
rrl | 1474794 | n.1137C>A | non_coding_transcript_exon_variant | 0.24 | capreomycin | Uncertain significance |
linezolid | Uncertain significance | |||||
rrl | 1475061 | n.1404C>T | non_coding_transcript_exon_variant | 0.31 | capreomycin | Uncertain significance |
linezolid | ||||||
rrl | 1475266 | n.1609T>C | non_coding_transcript_exon_variant | 0.15 | capreomycin | Uncertain significance |
linezolid | Uncertain significance | |||||
rrl | 1475273 | n.1616T>G | non_coding_transcript_exon_variant | 0.14 | capreomycin | |
linezolid | ||||||
rrl | 1475289 | n.1632G>A | non_coding_transcript_exon_variant | 0.15 | capreomycin | |
linezolid | ||||||
rrl | 1475290 | n.1633A>G | non_coding_transcript_exon_variant | 0.15 | capreomycin | |
linezolid | ||||||
rrl | 1475291 | n.1634A>C | non_coding_transcript_exon_variant | 0.15 | capreomycin | Uncertain significance |
linezolid | Uncertain significance | |||||
rrl | 1475429 | n.1772G>A | non_coding_transcript_exon_variant | 0.15 | capreomycin | Uncertain significance |
linezolid | Uncertain significance | |||||
rrl | 1475988 | n.2331A>G | non_coding_transcript_exon_variant | 0.31 | capreomycin | Not assoc w R |
linezolid | Uncertain significance | |||||
rrl | 1476619 | n.2962C>T | non_coding_transcript_exon_variant | 0.19 | capreomycin | Not assoc w R |
linezolid | Uncertain significance | |||||
rpsA | 1833256 | c.-286C>G | upstream_gene_variant | 0.28 | pyrazinamide | |
rpsA | 1833262 | c.-280T>A | upstream_gene_variant | 0.24 | pyrazinamide | |
rpsA | 1833271 | c.-271G>A | upstream_gene_variant | 0.23 | pyrazinamide | |
rpsA | 1833589 | c.48A>T | synonymous_variant | 0.31 | pyrazinamide | |
rpsA | 1833593 | p.Ser18Thr | missense_variant | 0.31 | pyrazinamide | |
rpsA | 1833604 | c.63C>T | synonymous_variant | 0.32 | pyrazinamide | |
rpsA | 1833610 | c.69C>A | synonymous_variant | 0.35 | pyrazinamide | |
rpsA | 1833661 | c.120A>G | synonymous_variant | 0.21 | pyrazinamide | |
rpsA | 1833664 | c.123C>A | synonymous_variant | 0.21 | pyrazinamide | |
rpsA | 1833694 | c.153G>T | synonymous_variant | 0.25 | pyrazinamide | |
rpsA | 1833718 | c.177C>T | synonymous_variant | 0.3 | pyrazinamide | |
rpsA | 1833724 | c.183C>G | synonymous_variant | 0.34 | pyrazinamide | |
rpsA | 1833727 | c.186G>C | synonymous_variant | 0.36 | pyrazinamide | |
rpsA | 1833742 | c.201A>G | synonymous_variant | 0.25 | pyrazinamide | |
rpsA | 1833745 | c.204G>C | synonymous_variant | 0.23 | pyrazinamide | |
rpsA | 1833754 | c.213G>A | synonymous_variant | 0.23 | pyrazinamide | |
rpsA | 1833802 | c.261A>G | synonymous_variant | 0.18 | pyrazinamide | |
rpsA | 1833856 | c.315A>G | synonymous_variant | 0.18 | pyrazinamide | |
rpsA | 1833874 | c.333T>C | synonymous_variant | 0.2 | pyrazinamide | |
rpsA | 1833928 | c.387G>C | synonymous_variant | 0.19 | pyrazinamide | |
rpsA | 1833949 | c.408T>C | synonymous_variant | 0.2 | pyrazinamide | |
rpsA | 1833979 | c.438T>C | synonymous_variant | 0.15 | pyrazinamide | |
rpsA | 1834000 | c.459G>C | synonymous_variant | 0.18 | pyrazinamide | |
rpsA | 1834015 | c.474G>C | synonymous_variant | 0.17 | pyrazinamide | |
rpsA | 1834024 | c.483G>A | synonymous_variant | 0.17 | pyrazinamide | |
rpsA | 1834051 | c.510G>A | synonymous_variant | 0.16 | pyrazinamide | |
rpsA | 1834249 | c.708T>C | synonymous_variant | 0.2 | pyrazinamide | |
rpsA | 1834261 | c.720A>G | synonymous_variant | 0.22 | pyrazinamide | Not assoc w R - Interim |
rpsA | 1834264 | c.723G>C | synonymous_variant | 0.21 | pyrazinamide | |
rpsA | 1834297 | c.756C>T | synonymous_variant | 0.27 | pyrazinamide | |
rpsA | 1834303 | c.762T>G | synonymous_variant | 0.23 | pyrazinamide | |
rpsA | 1834306 | c.765T>C | synonymous_variant | 0.22 | pyrazinamide | |
rpsA | 1834336 | c.795C>G | synonymous_variant | 0.17 | pyrazinamide | |
rpsA | 1834339 | c.798C>T | synonymous_variant | 0.2 | pyrazinamide | |
rpsA | 1834366 | c.825A>G | synonymous_variant | 0.15 | pyrazinamide | Not assoc w R - Interim |
rpsA | 1834369 | c.828C>G | synonymous_variant | 0.15 | pyrazinamide | |
rpsA | 1834375 | c.834G>A | synonymous_variant | 0.17 | pyrazinamide | |
rpsA | 1834411 | c.870T>C | synonymous_variant | 0.26 | pyrazinamide | |
rpsA | 1834417 | c.876G>C | synonymous_variant | 0.27 | pyrazinamide | |
rpsA | 1834423 | c.882G>C | synonymous_variant | 0.33 | pyrazinamide | |
rpsA | 1834451 | c.910T>C | synonymous_variant | 0.25 | pyrazinamide | |
rpsA | 1834456 | c.915T>G | synonymous_variant | 0.24 | pyrazinamide | |
rpsA | 1834468 | c.927A>G | synonymous_variant | 0.24 | pyrazinamide | |
rpsA | 1834489 | c.948T>C | synonymous_variant | 0.2 | pyrazinamide | |
rpsA | 1834495 | c.954G>A | synonymous_variant | 0.22 | pyrazinamide | |
rpsA | 1834546 | c.1005T>C | synonymous_variant | 0.18 | pyrazinamide | |
rpsA | 1834609 | c.1068T>C | synonymous_variant | 0.23 | pyrazinamide | |
rpsA | 1834615 | c.1074C>T | synonymous_variant | 0.22 | pyrazinamide | |
rpsA | 1834618 | c.1077G>C | synonymous_variant | 0.23 | pyrazinamide | |
rpsA | 1834633 | c.1092A>G | synonymous_variant | 0.23 | pyrazinamide | |
rpsA | 1834639 | c.1098T>C | synonymous_variant | 0.22 | pyrazinamide | |
rpsA | 1834690 | c.1149T>C | synonymous_variant | 0.24 | pyrazinamide | |
tsnR | 1854300 | p.Leu232Pro | missense_variant | 1.0 | linezolid | Not assoc w R |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 | capreomycin | Not assoc w R |
bacA | 2063685 | c.1044G>A | synonymous_variant | 1.0 | kanamycin | Not assoc w R - Interim |
capreomycin | Not assoc w R | |||||
streptomycin | Not assoc w R - Interim | |||||
amikacin | Not assoc w R | |||||
bacA | 2063911 | p.Ile273Thr | missense_variant | 1.0 | kanamycin | Uncertain significance |
capreomycin | Not assoc w R | |||||
streptomycin | Uncertain significance | |||||
amikacin | Not assoc w R | |||||
bacA | 2064222 | c.507G>A | synonymous_variant | 0.16 | kanamycin | Not assoc w R - Interim |
capreomycin | ||||||
streptomycin | Not assoc w R - Interim | |||||
amikacin | Not assoc w R - Interim | |||||
bacA | 2064254 | p.His159Asp | missense_variant | 0.14 | kanamycin | |
capreomycin | ||||||
streptomycin | ||||||
amikacin | ||||||
bacA | 2064258 | c.471A>G | synonymous_variant | 0.14 | kanamycin | |
capreomycin | ||||||
streptomycin | ||||||
amikacin | ||||||
bacA | 2064264 | c.465C>G | synonymous_variant | 0.18 | kanamycin | |
capreomycin | ||||||
streptomycin | ||||||
amikacin | ||||||
PPE35 | 2169879 | p.Phe245Cys | missense_variant | 1.0 | pyrazinamide | Uncertain significance |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 0.93 | bedaquiline | Not assoc w R - Interim |
clofazimine | Not assoc w R | |||||
kasA | 2517941 | c.-174C>G | upstream_gene_variant | 0.25 | isoniazid | |
kasA | 2517956 | c.-159G>A | upstream_gene_variant | 0.24 | isoniazid | |
kasA | 2517989 | c.-126T>C | upstream_gene_variant | 0.23 | isoniazid | |
kasA | 2518019 | c.-96A>G | upstream_gene_variant | 0.21 | isoniazid | |
kasA | 2518025 | c.-90G>C | upstream_gene_variant | 0.21 | isoniazid | |
kasA | 2518588 | c.474T>C | synonymous_variant | 0.4 | isoniazid | |
kasA | 2518591 | c.477G>C | synonymous_variant | 0.39 | isoniazid | |
kasA | 2518618 | c.504G>C | synonymous_variant | 0.5 | isoniazid | |
kasA | 2518633 | c.519G>C | synonymous_variant | 0.5 | isoniazid | |
kasA | 2518642 | c.528A>G | synonymous_variant | 0.53 | isoniazid | |
kasA | 2518645 | c.531G>C | synonymous_variant | 0.62 | isoniazid | |
kasA | 2518648 | c.534C>T | synonymous_variant | 0.57 | isoniazid | |
kasA | 2518672 | c.558G>C | synonymous_variant | 0.55 | isoniazid | |
kasA | 2518681 | c.567C>T | synonymous_variant | 0.53 | isoniazid | |
kasA | 2518684 | c.570C>A | synonymous_variant | 0.53 | isoniazid | |
kasA | 2518711 | c.597A>G | synonymous_variant | 0.5 | isoniazid | |
kasA | 2518714 | c.600A>T | synonymous_variant | 0.54 | isoniazid | |
kasA | 2518735 | c.621C>A | synonymous_variant | 0.48 | isoniazid | |
kasA | 2518744 | c.630C>T | synonymous_variant | 0.41 | isoniazid | |
kasA | 2518747 | c.633C>G | synonymous_variant | 0.37 | isoniazid | |
kasA | 2518756 | c.642G>C | synonymous_variant | 0.32 | isoniazid | |
kasA | 2518783 | c.669T>C | synonymous_variant | 0.25 | isoniazid | |
kasA | 2518789 | c.675G>T | synonymous_variant | 0.26 | isoniazid | |
kasA | 2518795 | c.681C>G | synonymous_variant | 0.25 | isoniazid | |
kasA | 2518798 | c.684G>C | synonymous_variant | 0.24 | isoniazid | |
kasA | 2518855 | c.741C>G | synonymous_variant | 0.24 | isoniazid | |
kasA | 2518856 | p.Ile248Leu | missense_variant | 0.25 | isoniazid | |
kasA | 2518864 | c.750G>C | synonymous_variant | 0.31 | isoniazid | |
kasA | 2518885 | c.771T>C | synonymous_variant | 0.43 | isoniazid | |
kasA | 2518894 | c.780G>A | synonymous_variant | 0.5 | isoniazid | |
kasA | 2518903 | c.789C>T | synonymous_variant | 0.47 | isoniazid | |
kasA | 2518906 | c.792A>G | synonymous_variant | 0.5 | isoniazid | |
kasA | 2518910 | c.796C>T | synonymous_variant | 0.5 | isoniazid | |
kasA | 2518939 | c.825T>C | synonymous_variant | 0.32 | isoniazid | |
kasA | 2518942 | c.828T>C | synonymous_variant | 0.33 | isoniazid | |
ahpC | 2726142 | c.-51G>A | upstream_gene_variant | 1.0 | isoniazid | Uncertain significance |
Rv2477c | 2782462 | c.1581C>G | synonymous_variant | 0.14 | kanamycin | |
levofloxacin | ||||||
moxifloxacin | ||||||
streptomycin | ||||||
rifampicin | Not assoc w R - Interim | |||||
ethambutol | Not assoc w R - Interim | |||||
amikacin | ||||||
Rv2477c | 2782483 | c.1560G>C | synonymous_variant | 0.19 | kanamycin | |
levofloxacin | ||||||
moxifloxacin | ||||||
streptomycin | ||||||
rifampicin | ||||||
ethambutol | ||||||
amikacin | ||||||
Rv2477c | 2782496 | p.Asp516Ala | missense_variant | 0.25 | kanamycin | |
levofloxacin | ||||||
moxifloxacin | ||||||
streptomycin | ||||||
rifampicin | ||||||
ethambutol | ||||||
amikacin | ||||||
Rv2477c | 2782498 | c.1545C>T | synonymous_variant | 0.25 | kanamycin | Not assoc w R |
levofloxacin | Not assoc w R | |||||
moxifloxacin | Not assoc w R | |||||
streptomycin | Not assoc w R - Interim | |||||
rifampicin | Not assoc w R | |||||
ethambutol | Not assoc w R | |||||
amikacin | Not assoc w R | |||||
Rv2477c | 2782504 | c.1539G>A | synonymous_variant | 0.24 | kanamycin | |
levofloxacin | ||||||
moxifloxacin | ||||||
streptomycin | ||||||
rifampicin | ||||||
ethambutol | ||||||
amikacin | ||||||
Rv2477c | 2783308 | c.735G>C | synonymous_variant | 0.23 | kanamycin | |
levofloxacin | ||||||
moxifloxacin | ||||||
streptomycin | ||||||
rifampicin | ||||||
ethambutol | ||||||
amikacin | ||||||
Rv2477c | 2783314 | c.729C>G | synonymous_variant | 0.24 | kanamycin | |
levofloxacin | ||||||
moxifloxacin | ||||||
streptomycin | Not assoc w R - Interim | |||||
rifampicin | Not assoc w R - Interim | |||||
ethambutol | Not assoc w R - Interim | |||||
amikacin | ||||||
Rv2477c | 2783329 | c.714G>A | synonymous_variant | 0.22 | kanamycin | |
levofloxacin | ||||||
moxifloxacin | ||||||
streptomycin | ||||||
rifampicin | ||||||
ethambutol | ||||||
amikacin | ||||||
Rv2477c | 2783332 | c.711T>C | synonymous_variant | 0.21 | kanamycin | |
levofloxacin | ||||||
moxifloxacin | ||||||
streptomycin | ||||||
rifampicin | ||||||
ethambutol | ||||||
amikacin | ||||||
Rv2477c | 2783335 | c.708C>T | synonymous_variant | 0.2 | kanamycin | Not assoc w R - Interim |
levofloxacin | Not assoc w R - Interim | |||||
moxifloxacin | Not assoc w R - Interim | |||||
streptomycin | Not assoc w R - Interim | |||||
rifampicin | Not assoc w R - Interim | |||||
ethambutol | Not assoc w R - Interim | |||||
amikacin | Not assoc w R - Interim | |||||
Rv2477c | 2783356 | c.687C>G | synonymous_variant | 0.21 | kanamycin | |
levofloxacin | ||||||
moxifloxacin | ||||||
streptomycin | ||||||
rifampicin | ||||||
ethambutol | ||||||
amikacin | ||||||
Rv2477c | 2783359 | c.684G>A | synonymous_variant | 0.18 | kanamycin | |
levofloxacin | ||||||
moxifloxacin | ||||||
streptomycin | ||||||
rifampicin | ||||||
ethambutol | ||||||
amikacin | ||||||
Rv2477c | 2783395 | c.648T>C | synonymous_variant | 0.17 | kanamycin | |
levofloxacin | ||||||
moxifloxacin | ||||||
streptomycin | ||||||
rifampicin | ||||||
ethambutol | ||||||
amikacin | ||||||
Rv2477c | 2783410 | c.633G>C | synonymous_variant | 0.15 | kanamycin | |
levofloxacin | ||||||
moxifloxacin | ||||||
streptomycin | ||||||
rifampicin | ||||||
ethambutol | ||||||
amikacin | ||||||
Rv2477c | 2783419 | c.624G>T | synonymous_variant | 0.15 | kanamycin | |
levofloxacin | ||||||
moxifloxacin | ||||||
streptomycin | ||||||
rifampicin | ||||||
ethambutol | ||||||
amikacin | ||||||
Rv2477c | 2783422 | c.621T>C | synonymous_variant | 0.15 | kanamycin | |
levofloxacin | ||||||
moxifloxacin | ||||||
streptomycin | ||||||
rifampicin | ||||||
ethambutol | ||||||
amikacin | ||||||
Rv2477c | 2783428 | c.615C>T | synonymous_variant | 0.16 | kanamycin | Not assoc w R - Interim |
levofloxacin | Not assoc w R - Interim | |||||
moxifloxacin | Not assoc w R - Interim | |||||
streptomycin | ||||||
rifampicin | Not assoc w R - Interim | |||||
ethambutol | ||||||
amikacin | Not assoc w R - Interim | |||||
Rv2477c | 2783432 | p.Ser204Ala | missense_variant | 0.17 | kanamycin | |
levofloxacin | ||||||
moxifloxacin | ||||||
streptomycin | ||||||
rifampicin | ||||||
ethambutol | ||||||
amikacin | ||||||
Rv2477c | 2783437 | c.606G>C | synonymous_variant | 0.2 | kanamycin | |
levofloxacin | ||||||
moxifloxacin | ||||||
streptomycin | ||||||
rifampicin | ||||||
ethambutol | ||||||
amikacin | ||||||
Rv2477c | 2783737 | c.306C>G | synonymous_variant | 0.17 | kanamycin | |
levofloxacin | ||||||
moxifloxacin | ||||||
streptomycin | ||||||
rifampicin | ||||||
ethambutol | ||||||
amikacin | ||||||
Rv2752c | 3065556 | c.636G>A | synonymous_variant | 0.24 | levofloxacin | |
moxifloxacin | ||||||
isoniazid | ||||||
rifampicin | ||||||
ethambutol | ||||||
Rv2752c | 3065580 | c.612G>C | synonymous_variant | 0.24 | levofloxacin | |
moxifloxacin | ||||||
isoniazid | ||||||
rifampicin | ||||||
ethambutol | ||||||
Rv2752c | 3065583 | c.609G>C | synonymous_variant | 0.22 | levofloxacin | |
moxifloxacin | ||||||
isoniazid | ||||||
rifampicin | ||||||
ethambutol | ||||||
Rv2752c | 3065594 | c.598C>T | synonymous_variant | 0.23 | levofloxacin | Not assoc w R - Interim |
moxifloxacin | Not assoc w R - Interim | |||||
isoniazid | Not assoc w R - Interim | |||||
rifampicin | Not assoc w R - Interim | |||||
ethambutol | Not assoc w R - Interim | |||||
Rv2752c | 3065595 | p.Leu199Phe | missense_variant | 0.23 | levofloxacin | |
moxifloxacin | ||||||
isoniazid | ||||||
rifampicin | ||||||
ethambutol | ||||||
Rv2752c | 3065612 | p.Thr194Ala | missense_variant | 0.26 | levofloxacin | |
moxifloxacin | ||||||
isoniazid | ||||||
rifampicin | ||||||
ethambutol | ||||||
Rv2752c | 3065625 | c.567G>C | synonymous_variant | 0.22 | levofloxacin | |
moxifloxacin | ||||||
isoniazid | ||||||
rifampicin | ||||||
ethambutol | ||||||
Rv2752c | 3065634 | c.558G>C | synonymous_variant | 0.17 | levofloxacin | |
moxifloxacin | ||||||
isoniazid | ||||||
rifampicin | ||||||
ethambutol | ||||||
Rv2752c | 3065901 | c.291A>T | synonymous_variant | 0.17 | levofloxacin | |
moxifloxacin | ||||||
isoniazid | ||||||
rifampicin | ||||||
ethambutol | ||||||
Rv2752c | 3065916 | c.276T>C | synonymous_variant | 0.18 | levofloxacin | |
moxifloxacin | ||||||
isoniazid | ||||||
rifampicin | ||||||
ethambutol | ||||||
Rv2752c | 3065919 | c.273G>C | synonymous_variant | 0.19 | levofloxacin | |
moxifloxacin | ||||||
isoniazid | ||||||
rifampicin | ||||||
ethambutol | ||||||
Rv2752c | 3065925 | c.267G>C | synonymous_variant | 0.21 | levofloxacin | |
moxifloxacin | ||||||
isoniazid | ||||||
rifampicin | ||||||
ethambutol | ||||||
Rv2752c | 3065947 | p.Gly82Ala | missense_variant | 0.25 | levofloxacin | |
moxifloxacin | ||||||
isoniazid | ||||||
rifampicin | ||||||
ethambutol | ||||||
Rv2752c | 3065958 | c.234G>A | synonymous_variant | 0.81 | levofloxacin | Not assoc w R - Interim |
moxifloxacin | Not assoc w R - Interim | |||||
isoniazid | Not assoc w R - Interim | |||||
rifampicin | Not assoc w R - Interim | |||||
ethambutol | Not assoc w R - Interim | |||||
thyX | 3067391 | c.555G>C | synonymous_variant | 0.27 | para-aminosalicylic_acid | |
thyX | 3067394 | c.552G>T | synonymous_variant | 0.27 | para-aminosalicylic_acid | |
thyX | 3067406 | c.540A>G | synonymous_variant | 0.32 | para-aminosalicylic_acid | |
ald | 3086742 | c.-78A>C | upstream_gene_variant | 1.0 | cycloserine | |
ald | 3086788 | c.-32T>C | upstream_gene_variant | 1.0 | cycloserine | |
Rv3083 | 3448753 | p.Tyr84His | missense_variant | 1.0 | ethionamide | Uncertain significance |
mtrB | 3625065 | p.Met517Leu | missense_variant | 1.0 | rifampicin | Not assoc w R |
bedaquiline | Uncertain significance | |||||
lpqB | 3625510 | c.-600T>G | upstream_gene_variant | 0.22 | rifampicin | |
bedaquiline | ||||||
lpqB | 3625518 | c.-608T>C | upstream_gene_variant | 0.24 | rifampicin | |
bedaquiline | ||||||
lpqB | 3625522 | c.-612C>G | upstream_gene_variant | 0.24 | rifampicin | |
bedaquiline | ||||||
lpqB | 3625537 | c.-627T>C | upstream_gene_variant | 0.21 | rifampicin | |
bedaquiline | ||||||
lpqB | 3625543 | c.-633G>C | upstream_gene_variant | 0.19 | rifampicin | |
bedaquiline | ||||||
mtrB | 3625569 | c.1045T>C | synonymous_variant | 0.23 | rifampicin | Not assoc w R - Interim |
bedaquiline | ||||||
mtrB | 3625572 | p.Thr348Ser | missense_variant | 0.23 | rifampicin | |
bedaquiline | ||||||
lpqB | 3625579 | c.-669A>G | upstream_gene_variant | 0.25 | rifampicin | |
bedaquiline | ||||||
mtrB | 3626704 | c.-91C>T | upstream_gene_variant | 0.22 | rifampicin | |
bedaquiline | ||||||
mtrB | 3626711 | c.-98T>A | upstream_gene_variant | 0.2 | rifampicin | |
bedaquiline | ||||||
mtrB | 3626723 | c.-110C>G | upstream_gene_variant | 0.2 | rifampicin | |
bedaquiline | ||||||
mtrB | 3626726 | c.-113T>C | upstream_gene_variant | 0.2 | rifampicin | |
bedaquiline | ||||||
mtrB | 3626729 | c.-116G>A | upstream_gene_variant | 0.2 | rifampicin | |
bedaquiline | ||||||
mtrB | 3626732 | c.-119A>G | upstream_gene_variant | 0.2 | rifampicin | |
bedaquiline | ||||||
mtrB | 3626776 | c.-163A>C | upstream_gene_variant | 0.15 | rifampicin | |
bedaquiline | ||||||
mtrA | 3626912 | c.438T>C | synonymous_variant | 0.21 | rifampicin | Not assoc w R - Interim |
bedaquiline | ||||||
mtrB | 3627032 | c.-419G>C | upstream_gene_variant | 0.19 | rifampicin | |
bedaquiline | ||||||
mtrA | 3627080 | c.270T>C | synonymous_variant | 0.24 | rifampicin | Not assoc w R - Interim |
bedaquiline | ||||||
mtrB | 3627083 | c.-470G>C | upstream_gene_variant | 0.24 | rifampicin | |
bedaquiline | ||||||
mtrA | 3627098 | c.252A>C | synonymous_variant | 0.22 | rifampicin | Not assoc w R - Interim |
bedaquiline | ||||||
mtrB | 3627104 | c.-491C>G | upstream_gene_variant | 0.24 | rifampicin | |
bedaquiline | ||||||
mtrB | 3627140 | c.-527G>C | upstream_gene_variant | 0.25 | rifampicin | |
bedaquiline | ||||||
mtrB | 3627155 | c.-542C>T | upstream_gene_variant | 0.26 | rifampicin | |
bedaquiline | ||||||
mtrB | 3627167 | c.-554T>C | upstream_gene_variant | 0.26 | rifampicin | |
bedaquiline | ||||||
mtrB | 3627182 | c.-569T>C | upstream_gene_variant | 0.26 | rifampicin | |
bedaquiline | ||||||
mtrA | 3627187 | c.163T>C | synonymous_variant | 0.26 | rifampicin | Not assoc w R - Interim |
bedaquiline | ||||||
mtrB | 3627188 | c.-577_-575delTTAinsCTG | upstream_gene_variant | 0.24 | rifampicin | |
bedaquiline | ||||||
mtrB | 3627203 | c.-590C>G | upstream_gene_variant | 0.24 | rifampicin | |
bedaquiline | ||||||
alr | 3840473 | c.948C>T | synonymous_variant | 0.14 | cycloserine | |
rpoA | 3877557 | c.951C>G | synonymous_variant | 0.21 | rifampicin | Not assoc w R - Interim |
rpoA | 3877567 | p.Ser314Thr | missense_variant | 0.26 | rifampicin | |
rpoA | 3877569 | c.939G>C | synonymous_variant | 0.28 | rifampicin | |
rpoA | 3877575 | c.933C>T | synonymous_variant | 0.26 | rifampicin | |
rpoA | 3877587 | c.921A>G | synonymous_variant | 0.28 | rifampicin | Not assoc w R - Interim |
rpoA | 3877593 | c.915C>T | synonymous_variant | 0.29 | rifampicin | Not assoc w R - Interim |
rpoA | 3877602 | c.906C>T | synonymous_variant | 0.29 | rifampicin | |
rpoA | 3877613 | p.Ile299Val | missense_variant | 0.22 | rifampicin | |
rpoA | 3877620 | c.888G>A | synonymous_variant | 0.21 | rifampicin | Not assoc w R - Interim |
rpoA | 3877647 | c.861C>A | synonymous_variant | 0.19 | rifampicin | |
rpoA | 3877848 | c.660C>T | synonymous_variant | 0.28 | rifampicin | Not assoc w R - Interim |
rpoA | 3877875 | c.633T>G | synonymous_variant | 0.29 | rifampicin | |
rpoA | 3877886 | c.622C>T | synonymous_variant | 0.24 | rifampicin | Not assoc w R - Interim |
rpoA | 3877896 | c.612G>C | synonymous_variant | 0.26 | rifampicin | |
rpoA | 3877899 | p.Ser203Thr | missense_variant | 0.26 | rifampicin | |
rpoA | 3877905 | c.603A>G | synonymous_variant | 0.27 | rifampicin | Not assoc w R - Interim |
rpoA | 3877909 | p.Asn200Ser | missense_variant | 0.29 | rifampicin | |
rpoA | 3877926 | c.582G>C | synonymous_variant | 0.25 | rifampicin | |
rpoA | 3877929 | c.579C>T | synonymous_variant | 0.26 | rifampicin | |
rpoA | 3878058 | c.450G>C | synonymous_variant | 0.26 | rifampicin | Not assoc w R - Interim |
rpoA | 3878061 | c.447G>C | synonymous_variant | 0.24 | rifampicin | |
rpoA | 3878070 | c.438T>C | synonymous_variant | 0.26 | rifampicin | |
rpoA | 3878085 | c.423G>A | synonymous_variant | 0.25 | rifampicin | |
rpoA | 3878097 | c.411G>A | synonymous_variant | 0.26 | rifampicin | |
rpoA | 3878100 | c.408C>G | synonymous_variant | 0.27 | rifampicin | |
rpoA | 3878106 | c.402G>C | synonymous_variant | 0.27 | rifampicin | |
rpoA | 3878118 | c.390T>C | synonymous_variant | 0.28 | rifampicin | |
rpoA | 3878126 | c.382C>T | synonymous_variant | 0.28 | rifampicin | Not assoc w R - Interim |
rpoA | 3878127 | c.381G>C | synonymous_variant | 0.3 | rifampicin | |
rpoA | 3878157 | c.351C>G | synonymous_variant | 0.33 | rifampicin | |
rpoA | 3878163 | c.345C>T | synonymous_variant | 0.34 | rifampicin | Not assoc w R - Interim |
rpoA | 3878172 | c.336G>C | synonymous_variant | 0.34 | rifampicin | |
rpoA | 3878193 | c.315T>C | synonymous_variant | 0.31 | rifampicin | Not assoc w R - Interim |
rpoA | 3878202 | c.306G>C | synonymous_variant | 0.27 | rifampicin | |
rpoA | 3878211 | c.297G>A | synonymous_variant | 0.27 | rifampicin | |
rpoA | 3878217 | c.291A>G | synonymous_variant | 0.22 | rifampicin | Not assoc w R - Interim |
rpoA | 3878247 | c.261G>C | synonymous_variant | 0.24 | rifampicin | |
rpoA | 3878256 | c.252G>C | synonymous_variant | 0.21 | rifampicin | |
rpoA | 3878298 | c.210A>G | synonymous_variant | 0.17 | rifampicin | Not assoc w R - Interim |
rpoA | 3878322 | c.186A>G | synonymous_variant | 0.18 | rifampicin | Not assoc w R - Interim |
rpoA | 3878376 | c.132G>A | synonymous_variant | 0.15 | rifampicin | |
rpoA | 3878424 | c.84G>C | synonymous_variant | 0.14 | rifampicin | |
rpoA | 3878472 | p.Asp12Glu | missense_variant | 0.17 | rifampicin | |
rpoA | 3878478 | c.30C>G | synonymous_variant | 0.18 | rifampicin | |
rpoA | 3878483 | c.25C>T | synonymous_variant | 0.18 | rifampicin | |
rpoA | 3878490 | c.18C>T | synonymous_variant | 0.19 | rifampicin | Not assoc w R - Interim |
rpoA | 3878496 | c.12A>T | synonymous_variant | 0.24 | rifampicin | |
rpoA | 3878742 | c.-235G>A | upstream_gene_variant | 0.33 | rifampicin | |
rpoA | 3878785 | c.-278T>G | upstream_gene_variant | 0.25 | rifampicin | |
rpoA | 3878788 | c.-281G>C | upstream_gene_variant | 0.27 | rifampicin | Uncertain significance |
rpoA | 3878791 | c.-284C>T | upstream_gene_variant | 0.28 | rifampicin | Uncertain significance |
rpoA | 3878797 | c.-290G>C | upstream_gene_variant | 0.29 | rifampicin | |
rpoA | 3878809 | c.-302T>C | upstream_gene_variant | 0.29 | rifampicin | |
rpoA | 3878824 | c.-317G>C | upstream_gene_variant | 0.27 | rifampicin | |
rpoA | 3878833 | c.-326C>T | upstream_gene_variant | 0.3 | rifampicin | |
rpoA | 3878853 | c.-346G>A | upstream_gene_variant | 0.33 | rifampicin | |
rpoA | 3878878 | c.-371T>C | upstream_gene_variant | 0.34 | rifampicin | Uncertain significance |
rpoA | 3878909 | c.-402A>G | upstream_gene_variant | 0.37 | rifampicin | |
rpoA | 3878914 | c.-407T>C | upstream_gene_variant | 0.37 | rifampicin | Uncertain significance |
rpoA | 3878920 | c.-413C>T | upstream_gene_variant | 0.33 | rifampicin | |
rpoA | 3878938 | c.-431T>C | upstream_gene_variant | 0.27 | rifampicin | |
rpoA | 3878947 | c.-440G>C | upstream_gene_variant | 0.28 | rifampicin | Uncertain significance |
rpoA | 3878962 | c.-455G>C | upstream_gene_variant | 0.26 | rifampicin | |
rpoA | 3878968 | c.-461T>C | upstream_gene_variant | 0.28 | rifampicin | Uncertain significance |
rpoA | 3879148 | c.-641G>C | upstream_gene_variant | 0.24 | rifampicin | |
rpoA | 3879154 | c.-647T>C | upstream_gene_variant | 0.23 | rifampicin | |
rpoA | 3879160 | c.-653A>G | upstream_gene_variant | 0.22 | rifampicin | |
rpoA | 3879172 | c.-665C>T | upstream_gene_variant | 0.18 | rifampicin | |
ddn | 3987092 | p.Glu83Asp | missense_variant | 1.0 | pretomanid | |
delamanid | Uncertain significance | |||||
clpC1 | 4038302 | c.2403C>G | synonymous_variant | 0.32 | pyrazinamide | |
clpC1 | 4038308 | c.2397G>C | synonymous_variant | 0.31 | pyrazinamide | |
clpC1 | 4038314 | c.2391T>G | synonymous_variant | 0.33 | pyrazinamide | |
clpC1 | 4038335 | c.2370C>T | synonymous_variant | 0.31 | pyrazinamide | Not assoc w R - Interim |
clpC1 | 4038344 | c.2361G>A | synonymous_variant | 0.26 | pyrazinamide | Not assoc w R - Interim |
clpC1 | 4038383 | c.2322G>A | synonymous_variant | 0.31 | pyrazinamide | |
clpC1 | 4038388 | c.2317T>C | synonymous_variant | 0.34 | pyrazinamide | |
clpC1 | 4038392 | c.2313C>T | synonymous_variant | 0.34 | pyrazinamide | |
clpC1 | 4038398 | c.2307G>T | synonymous_variant | 0.31 | pyrazinamide | |
clpC1 | 4038403 | c.2302T>C | synonymous_variant | 0.27 | pyrazinamide | Not assoc w R - Interim |
clpC1 | 4038407 | c.2298G>C | synonymous_variant | 0.28 | pyrazinamide | |
clpC1 | 4038419 | c.2286T>C | synonymous_variant | 0.26 | pyrazinamide | |
clpC1 | 4038436 | p.Ala757Ser | missense_variant | 0.3 | pyrazinamide | |
clpC1 | 4038444 | p.Ala754Lys | missense_variant | 0.32 | pyrazinamide | |
clpC1 | 4038446 | c.2259T>C | synonymous_variant | 0.33 | pyrazinamide | |
clpC1 | 4038456 | p.Val750Glu | missense_variant | 0.28 | pyrazinamide | |
clpC1 | 4038755 | c.1950G>T | synonymous_variant | 0.18 | pyrazinamide | |
clpC1 | 4038773 | c.1932T>C | synonymous_variant | 0.23 | pyrazinamide | |
clpC1 | 4038790 | c.1915C>T | synonymous_variant | 0.25 | pyrazinamide | Not assoc w R - Interim |
clpC1 | 4038800 | c.1905C>T | synonymous_variant | 0.29 | pyrazinamide | |
clpC1 | 4038812 | c.1893T>C | synonymous_variant | 0.31 | pyrazinamide | |
clpC1 | 4038838 | c.1867C>T | synonymous_variant | 0.2 | pyrazinamide | |
clpC1 | 4038839 | c.1866G>C | synonymous_variant | 0.2 | pyrazinamide | |
clpC1 | 4038878 | c.1827A>G | synonymous_variant | 0.19 | pyrazinamide | Not assoc w R - Interim |
clpC1 | 4039022 | c.1683A>G | synonymous_variant | 0.22 | pyrazinamide | |
clpC1 | 4039037 | c.1668T>C | synonymous_variant | 0.33 | pyrazinamide | |
clpC1 | 4039085 | c.1620A>G | synonymous_variant | 0.35 | pyrazinamide | |
clpC1 | 4039090 | c.1615C>T | synonymous_variant | 0.35 | pyrazinamide | |
clpC1 | 4039097 | c.1608G>C | synonymous_variant | 0.38 | pyrazinamide | |
clpC1 | 4039103 | c.1602T>C | synonymous_variant | 0.39 | pyrazinamide | |
clpC1 | 4039106 | c.1599G>C | synonymous_variant | 0.38 | pyrazinamide | |
clpC1 | 4039112 | c.1593C>G | synonymous_variant | 0.41 | pyrazinamide | |
clpC1 | 4039121 | c.1584T>C | synonymous_variant | 0.36 | pyrazinamide | |
clpC1 | 4039133 | c.1572C>G | synonymous_variant | 0.3 | pyrazinamide | |
clpC1 | 4039142 | c.1563A>G | synonymous_variant | 0.29 | pyrazinamide | |
clpC1 | 4039145 | c.1560G>C | synonymous_variant | 0.28 | pyrazinamide | |
clpC1 | 4039169 | p.Glu512Asp | missense_variant | 0.27 | pyrazinamide | |
clpC1 | 4039172 | c.1533A>G | synonymous_variant | 0.28 | pyrazinamide | |
clpC1 | 4039183 | c.1522T>C | synonymous_variant | 0.3 | pyrazinamide | |
clpC1 | 4039187 | c.1518G>C | synonymous_variant | 0.27 | pyrazinamide | |
clpC1 | 4039226 | c.1479T>C | synonymous_variant | 0.25 | pyrazinamide | Not assoc w R - Interim |
clpC1 | 4039274 | c.1431G>C | synonymous_variant | 0.18 | pyrazinamide | Not assoc w R - Interim |
clpC1 | 4039286 | c.1419T>C | synonymous_variant | 0.18 | pyrazinamide | |
clpC1 | 4039322 | c.1383T>C | synonymous_variant | 0.17 | pyrazinamide | |
clpC1 | 4039337 | c.1368A>C | synonymous_variant | 0.23 | pyrazinamide | |
clpC1 | 4039826 | c.879C>G | synonymous_variant | 0.18 | pyrazinamide | |
clpC1 | 4039831 | c.874T>C | synonymous_variant | 0.2 | pyrazinamide | |
clpC1 | 4039850 | c.855T>C | synonymous_variant | 0.2 | pyrazinamide | |
clpC1 | 4039865 | c.840T>C | synonymous_variant | 0.19 | pyrazinamide | |
clpC1 | 4039868 | c.837C>T | synonymous_variant | 0.2 | pyrazinamide | Not assoc w R - Interim |
clpC1 | 4040021 | c.684A>C | synonymous_variant | 0.15 | pyrazinamide | Not assoc w R - Interim |
embC | 4239044 | c.-819G>C | upstream_gene_variant | 0.16 | ethambutol | |
embC | 4240741 | c.879C>T | synonymous_variant | 0.19 | ethambutol | |
embC | 4240777 | c.915G>A | synonymous_variant | 0.22 | ethambutol | Not assoc w R - Interim |
embC | 4240780 | c.918T>C | synonymous_variant | 0.2 | ethambutol | |
embC | 4240783 | c.921G>C | synonymous_variant | 0.19 | ethambutol | |
embC | 4241056 | c.1194C>G | synonymous_variant | 0.19 | ethambutol | |
embC | 4241095 | c.1233C>T | synonymous_variant | 0.28 | ethambutol | |
embC | 4241107 | c.1245G>C | synonymous_variant | 0.28 | ethambutol | |
embC | 4241140 | c.1278A>G | synonymous_variant | 0.19 | ethambutol | Not assoc w R - Interim |
embC | 4241153 | p.Ile431Leu | missense_variant | 0.25 | ethambutol | |
embC | 4241161 | c.1299C>G | synonymous_variant | 0.22 | ethambutol | Not assoc w R - Interim |
embC | 4241162 | c.1300T>C | synonymous_variant | 0.22 | ethambutol | |
embC | 4241167 | c.1305C>G | synonymous_variant | 0.23 | ethambutol | |
embC | 4241185 | c.1323G>C | synonymous_variant | 0.22 | ethambutol | |
embC | 4241197 | c.1335G>C | synonymous_variant | 0.16 | ethambutol | |
embC | 4242643 | c.2781C>T | synonymous_variant | 1.0 | ethambutol | Not assoc w R |
embA | 4245182 | c.1950T>C | synonymous_variant | 0.17 | ethambutol | |
embA | 4245186 | p.Thr652Ala | missense_variant | 0.17 | ethambutol | |
embB | 4247440 | c.927C>G | synonymous_variant | 0.21 | ethambutol | |
embB | 4247470 | c.957T>C | synonymous_variant | 0.23 | ethambutol | |
embB | 4247497 | c.984T>C | synonymous_variant | 0.26 | ethambutol | |
embB | 4247500 | c.987C>G | synonymous_variant | 0.28 | ethambutol | |
embB | 4247512 | c.999T>C | synonymous_variant | 0.27 | ethambutol | |
embB | 4247684 | c.1171T>C | synonymous_variant | 0.15 | ethambutol | |
embB | 4247785 | c.1272G>C | synonymous_variant | 0.17 | ethambutol | |
embB | 4248070 | c.1557T>C | synonymous_variant | 0.17 | ethambutol | |
embB | 4248448 | c.1935C>T | synonymous_variant | 0.2 | ethambutol | |
embB | 4248457 | c.1944T>C | synonymous_variant | 0.2 | ethambutol | |
embB | 4248472 | c.1959T>C | synonymous_variant | 0.19 | ethambutol | |
aftB | 4269180 | c.-344G>T | upstream_gene_variant | 0.38 | ethambutol | |
aftB | 4269195 | c.-359C>T | upstream_gene_variant | 0.42 | ethambutol | |
aftB | 4269216 | c.-380C>T | upstream_gene_variant | 0.39 | ethambutol | |
ubiA | 4269222 | c.612T>G | synonymous_variant | 0.38 | ethambutol | Not assoc w R - Interim |
ubiA | 4269225 | c.609C>T | synonymous_variant | 0.35 | ethambutol | Not assoc w R - Interim |
aftB | 4269231 | c.-395C>T | upstream_gene_variant | 0.37 | ethambutol | |
aftB | 4269234 | c.-398A>G | upstream_gene_variant | 0.39 | ethambutol | |
ubiA | 4269243 | p.His197Gln | missense_variant | 0.45 | ethambutol | |
aftB | 4269248 | c.-412C>T | upstream_gene_variant | 0.38 | ethambutol | |
ethA | 4327065 | p.Cys137Arg | missense_variant | 0.97 | ethionamide | Uncertain significance |
ethR | 4327318 | c.-231T>G | upstream_gene_variant | 0.21 | ethionamide | |
ethR | 4327327 | c.-222A>G | upstream_gene_variant | 0.21 | ethionamide | |
ethR | 4327330 | c.-219G>A | upstream_gene_variant | 0.21 | ethionamide | |
ethR | 4327335 | c.-214A>G | upstream_gene_variant | 0.21 | ethionamide | |
ethR | 4327336 | c.-213A>G | upstream_gene_variant | 0.21 | ethionamide | |
ethA | 4327356 | p.Ser40Ala | missense_variant | 0.2 | ethionamide | |
ethA | 4327357 | p.Glu39Ser | missense_variant | 0.21 | ethionamide | |
ethR | 4327390 | c.-159C>G | upstream_gene_variant | 0.27 | ethionamide | |
ethR | 4327396 | c.-153A>G | upstream_gene_variant | 0.22 | ethionamide | |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 | kanamycin | Not assoc w R |
capreomycin | Not assoc w R | |||||
amikacin | Not assoc w R | |||||
whiB6 | 4338732 | c.-211C>T | upstream_gene_variant | 1.0 | kanamycin | |
capreomycin | ||||||
amikacin | ||||||
gid | 4408213 | c.-11C>T | upstream_gene_variant | 1.0 | streptomycin | Uncertain significance |