TB-Profiler result

Run: SRR6832178
Summary

Run ID: SRR6832178

Sample name:

Date: 04-04-2023 17:16:33

Number of reads: 1584680

Percentage reads mapped: 76.13

Strain: lineage4.2.1.1

Drug-resistance: HR-TB

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Drug resistance: This table reports drug-resistance associated mutations found in known resistance genes
Drug Resistance Supporting mutations
Lineage Table: The lineage is inferred by analysing lineage specific SNPs
Lineage Family Main Spoligotype RDs Frequency
lineage4 Euro-American LAM;T;S;X;H None 0.97
lineage4.2 Euro-American H;T;LAM None 0.94
lineage4.2.1 Euro-American (TUR) H3;H4 None 0.99
lineage4.2.1.1 Euro-American (TUR) H3;H4 None 0.98
Drug resistance-Associated Mutations: This table reports mutations found in candidate resistance genes which have been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction Drugs
rpsL 781822 p.Lys88Arg missense_variant 0.88 streptomycin
katG 2155168 p.Ser315Thr missense_variant 1.0 isoniazid
folC 2747141 p.Glu153Ala missense_variant 1.0 para-aminosalicylic_acid
embB 4247448 p.His312Arg missense_variant 0.2 ethambutol
embB 4247663 p.Tyr384Asn missense_variant 0.16 ethambutol
Non-Associated Mutations: This table reports mutations found in candidate resistance genes which have not been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction
gyrB 5284 c.45G>A synonymous_variant 0.24
gyrB 5287 c.48T>C synonymous_variant 0.26
gyrB 5293 c.54C>G synonymous_variant 0.3
gyrB 5302 c.63A>G synonymous_variant 0.29
gyrB 5305 c.66G>A synonymous_variant 0.3
gyrB 5308 c.69G>A synonymous_variant 0.3
gyrB 5341 c.102T>C synonymous_variant 0.28
gyrB 5359 c.120C>T synonymous_variant 0.25
gyrB 5363 c.124_126delTTAinsCTG synonymous_variant 0.21
gyrB 5377 c.138T>C synonymous_variant 0.28
gyrB 5422 c.183T>C synonymous_variant 0.16
gyrB 5425 c.186A>G synonymous_variant 0.16
gyrB 5426 p.Thr63Ala missense_variant 0.15
gyrB 5431 c.192A>C synonymous_variant 0.16
gyrB 5434 c.195G>A synonymous_variant 0.16
gyrB 5436 p.Asn66Ser missense_variant 0.15
gyrB 5440 c.201A>G synonymous_variant 0.16
gyrB 5470 c.231C>G synonymous_variant 0.13
gyrB 5767 c.528C>T synonymous_variant 0.17
gyrB 5771 p.Ala178Asn missense_variant 0.19
gyrB 5779 c.540C>T synonymous_variant 0.18
gyrB 5782 c.543A>G synonymous_variant 0.18
gyrB 5788 c.549G>C synonymous_variant 0.18
gyrB 5791 c.552A>G synonymous_variant 0.17
gyrB 5812 c.573C>A synonymous_variant 0.21
gyrB 5815 c.576C>A synonymous_variant 0.21
gyrB 5819 c.580C>T synonymous_variant 0.21
gyrB 5824 c.585A>G synonymous_variant 0.21
gyrB 5836 c.597C>T synonymous_variant 0.26
gyrB 5851 c.612G>C synonymous_variant 0.22
gyrB 5860 c.621C>T synonymous_variant 0.2
gyrB 6079 c.840C>T synonymous_variant 0.16
gyrB 6085 c.846C>A synonymous_variant 0.16
gyrB 6086 p.Thr283Pro missense_variant 0.17
gyrB 6091 c.852G>C synonymous_variant 0.18
gyrB 6097 c.858G>A synonymous_variant 0.18
gyrB 6115 c.876A>G synonymous_variant 0.23
gyrB 6121 c.882C>T synonymous_variant 0.21
gyrB 6127 c.888G>C synonymous_variant 0.21
gyrB 6145 c.906C>T synonymous_variant 0.23
gyrB 6178 c.939C>T synonymous_variant 0.2
gyrB 6181 c.942C>G synonymous_variant 0.2
gyrB 6196 c.957C>G synonymous_variant 0.17
gyrB 6214 c.975G>C synonymous_variant 0.22
gyrB 6247 c.1008G>A synonymous_variant 0.21
gyrB 6250 c.1011A>G synonymous_variant 0.21
gyrB 6253 c.1014G>C synonymous_variant 0.22
gyrA 6982 c.-320A>C upstream_gene_variant 0.16
gyrA 6991 c.-311C>T upstream_gene_variant 0.15
gyrA 6994 c.-308C>T upstream_gene_variant 0.16
gyrA 6997 c.-305G>A upstream_gene_variant 0.15
gyrA 7000 c.-302C>T upstream_gene_variant 0.14
gyrA 7006 c.-296T>G upstream_gene_variant 0.15
gyrA 7018 c.-284G>A upstream_gene_variant 0.19
gyrA 7024 c.-278G>C upstream_gene_variant 0.22
gyrA 7030 c.-272C>A upstream_gene_variant 0.2
gyrA 7033 c.-269G>C upstream_gene_variant 0.19
gyrA 7060 c.-242T>C upstream_gene_variant 0.22
gyrA 7066 c.-236G>C upstream_gene_variant 0.21
gyrA 7362 p.Glu21Gln missense_variant 1.0
gyrA 7523 c.222C>A synonymous_variant 0.16
gyrA 7532 c.231T>C synonymous_variant 0.17
gyrA 7541 c.240C>G synonymous_variant 0.17
gyrA 7547 c.246C>T synonymous_variant 0.2
gyrA 7585 p.Ser95Thr missense_variant 1.0
gyrA 7595 c.294C>G synonymous_variant 0.29
gyrA 7601 c.300C>G synonymous_variant 0.26
gyrA 7619 c.318C>T synonymous_variant 0.23
gyrA 7622 c.321C>T synonymous_variant 0.23
gyrA 7631 c.330G>C synonymous_variant 0.21
gyrA 7652 c.351C>G synonymous_variant 0.2
gyrA 7715 c.414G>C synonymous_variant 0.14
gyrA 7832 c.531G>T synonymous_variant 0.31
gyrA 7835 c.534A>C synonymous_variant 0.31
gyrA 7838 c.537C>T synonymous_variant 0.33
gyrA 7850 c.549C>G synonymous_variant 0.31
gyrA 7859 c.558A>C synonymous_variant 0.29
gyrA 7886 c.585T>C synonymous_variant 0.24
gyrA 7889 c.588G>A synonymous_variant 0.24
gyrA 7892 c.591G>C synonymous_variant 0.22
gyrA 8237 c.936A>G synonymous_variant 0.15
gyrA 8253 p.Ile318Leu missense_variant 0.17
gyrA 8258 c.957G>A synonymous_variant 0.18
gyrA 8264 c.963T>C synonymous_variant 0.17
gyrA 8267 c.966G>C synonymous_variant 0.18
gyrA 8282 c.981G>A synonymous_variant 0.15
gyrA 8283 p.Ile328Leu missense_variant 0.15
gyrA 8288 c.987T>C synonymous_variant 0.15
gyrA 8294 c.993T>C synonymous_variant 0.17
gyrA 8315 c.1014G>A synonymous_variant 0.17
gyrA 8382 p.Leu361Met missense_variant 0.15
gyrA 8393 c.1092T>C synonymous_variant 0.16
gyrA 8399 c.1098T>C synonymous_variant 0.14
gyrA 8471 c.1170T>C synonymous_variant 0.14
gyrA 8519 c.1218A>C synonymous_variant 0.15
gyrA 8531 c.1230G>A synonymous_variant 0.19
gyrA 8546 c.1245T>C synonymous_variant 0.19
gyrA 8619 c.1318T>C synonymous_variant 0.14
gyrA 8645 c.1344C>T synonymous_variant 0.14
gyrA 8655 p.Ile452Val missense_variant 0.15
gyrA 8666 c.1365G>C synonymous_variant 0.15
gyrA 8693 c.1392T>C synonymous_variant 0.16
gyrA 8723 c.1422G>A synonymous_variant 0.26
gyrA 8729 c.1428T>C synonymous_variant 0.29
gyrA 8732 c.1431G>C synonymous_variant 0.29
gyrA 8752 p.Ala484Gly missense_variant 0.21
gyrA 8756 c.1455A>G synonymous_variant 0.21
gyrA 8762 c.1461G>C synonymous_variant 0.19
gyrA 8767 p.Arg489Lys missense_variant 0.21
gyrA 8783 c.1482G>T synonymous_variant 0.19
gyrA 8786 c.1485T>C synonymous_variant 0.19
gyrA 8795 c.1494C>T synonymous_variant 0.2
gyrA 8796 p.Ile499Val missense_variant 0.21
gyrA 8801 c.1500G>C synonymous_variant 0.21
gyrA 8810 c.1509A>C synonymous_variant 0.22
gyrA 8813 c.1512C>T synonymous_variant 0.23
gyrA 8825 c.1524G>A synonymous_variant 0.16
gyrA 8897 c.1596T>C synonymous_variant 0.16
gyrA 8903 c.1602T>C synonymous_variant 0.19
gyrA 8915 c.1614A>G synonymous_variant 0.19
gyrA 8924 c.1623C>G synonymous_variant 0.19
gyrA 8933 c.1632G>A synonymous_variant 0.19
gyrA 8939 c.1638T>C synonymous_variant 0.2
gyrA 8942 c.1641G>C synonymous_variant 0.2
gyrA 8945 c.1644G>T synonymous_variant 0.19
gyrA 8946 c.1645_1647delTTGinsCTC synonymous_variant 0.19
gyrA 8981 c.1680G>C synonymous_variant 0.2
gyrA 8987 c.1686C>G synonymous_variant 0.19
gyrA 8998 p.Leu566Trp missense_variant 0.18
gyrA 9003 c.1702C>T synonymous_variant 0.18
gyrA 9017 c.1716C>T synonymous_variant 0.18
gyrA 9023 c.1722A>C synonymous_variant 0.19
gyrA 9029 c.1728T>G synonymous_variant 0.18
gyrA 9050 p.Asp583Glu missense_variant 0.18
gyrA 9065 c.1764C>G synonymous_variant 0.16
gyrA 9068 c.1767G>C synonymous_variant 0.15
gyrA 9071 c.1770G>C synonymous_variant 0.14
gyrA 9080 c.1779G>C synonymous_variant 0.14
gyrA 9230 c.1929T>C synonymous_variant 0.14
gyrA 9236 c.1935G>C synonymous_variant 0.14
gyrA 9242 c.1941A>C synonymous_variant 0.17
gyrA 9252 p.Val651Ile missense_variant 0.18
gyrA 9257 c.1956C>T synonymous_variant 0.18
gyrA 9284 c.1983T>G synonymous_variant 0.2
gyrA 9296 c.1995T>C synonymous_variant 0.18
gyrA 9304 p.Gly668Asp missense_variant 1.0
gyrA 9585 c.2284T>C synonymous_variant 0.16
gyrA 9626 c.2325T>C synonymous_variant 0.16
gyrA 9629 c.2328C>A synonymous_variant 0.16
gyrA 9630 p.Val777Ile missense_variant 0.17
gyrA 9635 c.2334T>C synonymous_variant 0.18
gyrA 9644 c.2343T>C synonymous_variant 0.2
gyrA 9650 c.2349G>C synonymous_variant 0.21
gyrA 9656 c.2355C>G synonymous_variant 0.23
gyrA 9659 c.2358C>G synonymous_variant 0.24
gyrA 9668 c.2367C>A synonymous_variant 0.21
gyrA 9689 c.2388G>C synonymous_variant 0.21
gyrA 9704 c.2403T>C synonymous_variant 0.2
gyrA 9707 c.2406G>C synonymous_variant 0.21
gyrA 9716 c.2415T>C synonymous_variant 0.2
fgd1 490809 c.27A>G synonymous_variant 0.19
fgd1 490818 c.36C>T synonymous_variant 0.24
fgd1 490830 c.48A>C synonymous_variant 0.26
fgd1 490851 c.69A>T synonymous_variant 0.3
fgd1 490853 p.Ala24Gly missense_variant 0.3
fgd1 490863 c.81C>A synonymous_variant 0.28
fgd1 490869 c.87C>T synonymous_variant 0.3
fgd1 490890 c.108C>G synonymous_variant 0.29
fgd1 490896 c.114C>T synonymous_variant 0.3
fgd1 490905 c.123T>C synonymous_variant 0.21
fgd1 490911 c.129T>C synonymous_variant 0.18
fgd1 490921 p.Gln47Lys missense_variant 0.16
fgd1 491007 c.225G>C synonymous_variant 0.16
fgd1 491013 c.231C>G synonymous_variant 0.19
fgd1 491043 c.261T>G synonymous_variant 0.19
fgd1 491049 c.267T>G synonymous_variant 0.18
fgd1 491063 p.Gly94Ala missense_variant 0.16
fgd1 491067 c.285C>T synonymous_variant 0.17
fgd1 491077 p.Asn99Asp missense_variant 0.2
fgd1 491085 c.303T>G synonymous_variant 0.2
fgd1 491496 c.714C>T synonymous_variant 0.15
fgd1 491499 c.717G>C synonymous_variant 0.17
fgd1 491508 c.726A>T synonymous_variant 0.14
fgd1 491523 c.741G>A synonymous_variant 0.18
fgd1 491526 c.744T>C synonymous_variant 0.17
fgd1 491542 c.760T>C synonymous_variant 0.18
fgd1 491547 c.765A>C synonymous_variant 0.19
fgd1 491550 c.768T>C synonymous_variant 0.19
fgd1 491553 c.771G>A synonymous_variant 0.19
fgd1 491601 c.819T>C synonymous_variant 0.24
fgd1 491604 c.822G>C synonymous_variant 0.24
fgd1 491610 c.828A>G synonymous_variant 0.23
fgd1 491616 c.834A>G synonymous_variant 0.23
fgd1 491628 c.846G>A synonymous_variant 0.18
fgd1 491643 c.861G>C synonymous_variant 0.18
fgd1 491646 c.864G>C synonymous_variant 0.18
fgd1 491664 c.882C>G synonymous_variant 0.14
mshA 575705 c.358T>C synonymous_variant 0.16
mshA 575713 c.366G>A synonymous_variant 0.21
mshA 575732 c.385_387delCTTinsTTG synonymous_variant 0.18
mshA 575737 c.390T>C synonymous_variant 0.17
mshA 575746 c.399C>G synonymous_variant 0.17
mshA 575767 c.420G>A synonymous_variant 0.19
mshA 575770 c.423G>C synonymous_variant 0.19
mshA 575772 p.Val142Ala missense_variant 0.18
mshA 575785 c.438T>C synonymous_variant 0.19
mshA 576166 c.819C>G synonymous_variant 0.13
mshA 576193 c.846T>C synonymous_variant 0.14
mshA 576202 c.855T>C synonymous_variant 0.16
mshA 576205 c.858G>C synonymous_variant 0.16
mshA 576207 p.Ala287Val missense_variant 0.17
mshA 576215 c.868_870delTTGinsCTC synonymous_variant 0.17
mshA 576220 c.873C>G synonymous_variant 0.17
mshA 576223 c.876G>A synonymous_variant 0.17
mshA 576230 p.Ile295Val missense_variant 0.17
mshA 576233 p.Ile296Val missense_variant 0.15
mshA 576238 c.891G>C synonymous_variant 0.17
mshA 576247 c.900A>G synonymous_variant 0.17
ccsA 620245 p.Leu119Met missense_variant 0.18
ccsA 620256 c.366C>G synonymous_variant 0.14
ccsA 620257 p.Ile123Val missense_variant 0.15
ccsA 620271 c.381C>G synonymous_variant 0.14
ccsA 620325 c.435G>T synonymous_variant 0.15
ccsA 620397 c.507C>G synonymous_variant 0.16
ccsA 620415 c.525T>C synonymous_variant 0.16
ccsA 620418 c.528G>C synonymous_variant 0.16
ccsA 620622 c.732G>C synonymous_variant 0.15
ccsA 620631 c.741T>G synonymous_variant 0.15
ccsA 620685 c.795G>A synonymous_variant 0.16
rpoB 759635 c.-172C>T upstream_gene_variant 0.25
rpoB 759644 c.-163T>A upstream_gene_variant 0.26
rpoB 759647 c.-160T>C upstream_gene_variant 0.27
rpoB 759661 c.-146G>C upstream_gene_variant 0.27
rpoB 760181 c.375T>C synonymous_variant 0.14
rpoB 760184 c.378A>G synonymous_variant 0.14
rpoB 760193 c.387C>G synonymous_variant 0.17
rpoB 760196 c.390C>G synonymous_variant 0.18
rpoB 760202 c.396G>A synonymous_variant 0.18
rpoB 760223 c.417T>C synonymous_variant 0.21
rpoB 760235 c.429T>C synonymous_variant 0.25
rpoB 760256 c.450C>T synonymous_variant 0.25
rpoB 760298 c.492G>C synonymous_variant 0.19
rpoB 760307 c.501T>C synonymous_variant 0.15
rpoB 760328 c.522G>C synonymous_variant 0.16
rpoB 760343 c.537G>C synonymous_variant 0.15
rpoB 760361 c.555T>C synonymous_variant 0.17
rpoB 760406 c.600G>C synonymous_variant 0.24
rpoB 760409 c.603C>T synonymous_variant 0.22
rpoB 760412 c.606C>G synonymous_variant 0.21
rpoB 760415 c.609C>G synonymous_variant 0.2
rpoB 760418 c.612G>C synonymous_variant 0.21
rpoB 760424 c.618C>G synonymous_variant 0.2
rpoB 760430 c.624T>C synonymous_variant 0.19
rpoB 760445 c.639C>T synonymous_variant 0.17
rpoB 760475 c.669A>G synonymous_variant 0.2
rpoB 760646 c.840C>G synonymous_variant 0.15
rpoB 760655 c.849A>G synonymous_variant 0.17
rpoB 760661 c.855A>C synonymous_variant 0.16
rpoB 760664 c.858G>C synonymous_variant 0.15
rpoB 760670 c.864G>C synonymous_variant 0.14
rpoB 760673 c.867G>A synonymous_variant 0.15
rpoB 760674 c.868T>C synonymous_variant 0.15
rpoB 760679 c.873A>G synonymous_variant 0.17
rpoB 760683 c.877T>C synonymous_variant 0.17
rpoB 760830 c.1024T>C synonymous_variant 0.19
rpoB 760841 c.1035T>C synonymous_variant 0.21
rpoB 760845 p.Thr347Ala missense_variant 0.21
rpoB 760859 c.1053T>G synonymous_variant 0.19
rpoB 760868 c.1062C>G synonymous_variant 0.2
rpoB 760919 c.1113C>G synonymous_variant 0.17
rpoB 760920 c.1114C>T synonymous_variant 0.16
rpoB 760928 c.1122G>C synonymous_variant 0.15
rpoB 761006 c.1200C>T synonymous_variant 0.17
rpoB 761015 c.1209G>C synonymous_variant 0.26
rpoB 761027 c.1221A>G synonymous_variant 0.35
rpoB 761036 c.1230G>A synonymous_variant 0.34
rpoB 761037 c.1231T>C synonymous_variant 0.34
rpoB 761051 c.1245G>C synonymous_variant 0.4
rpoB 761066 c.1260G>C synonymous_variant 0.4
rpoB 761096 c.1290G>C synonymous_variant 0.28
rpoB 761097 c.1291_1292delAGinsTC synonymous_variant 0.28
rpoB 761102 c.1296A>G synonymous_variant 0.29
rpoB 761180 c.1374A>C synonymous_variant 0.15
rpoB 761183 c.1377T>G synonymous_variant 0.15
rpoB 761201 c.1395G>A synonymous_variant 0.24
rpoB 761204 c.1398C>G synonymous_variant 0.25
rpoB 761207 c.1401C>T synonymous_variant 0.24
rpoB 761234 c.1428G>C synonymous_variant 0.25
rpoB 761249 c.1443A>G synonymous_variant 0.27
rpoB 761255 c.1449T>G synonymous_variant 0.26
rpoB 761261 c.1455G>T synonymous_variant 0.24
rpoB 761273 c.1467T>C synonymous_variant 0.19
rpoB 761318 c.1512G>C synonymous_variant 0.14
rpoB 761327 c.1521A>G synonymous_variant 0.22
rpoB 761346 p.Val514Ile missense_variant 0.19
rpoB 761354 c.1548C>T synonymous_variant 0.17
rpoB 761355 p.Val517Leu missense_variant 0.17
rpoB 761362 p.Ser519Thr missense_variant 0.18
rpoB 761366 c.1560C>T synonymous_variant 0.17
rpoB 761373 p.Val523His missense_variant 0.18
rpoB 761379 c.1573C>T synonymous_variant 0.18
rpoB 761384 c.1578C>G synonymous_variant 0.17
rpoB 761408 c.1602G>C synonymous_variant 0.16
rpoB 761483 c.1677G>C synonymous_variant 0.15
rpoB 761537 c.1731C>G synonymous_variant 0.16
rpoB 761561 c.1755C>G synonymous_variant 0.2
rpoB 761564 c.1758G>C synonymous_variant 0.2
rpoB 761573 c.1767C>G synonymous_variant 0.18
rpoB 761579 c.1773G>C synonymous_variant 0.18
rpoB 761600 c.1794T>G synonymous_variant 0.2
rpoB 761603 c.1797C>T synonymous_variant 0.21
rpoB 761606 c.1800C>G synonymous_variant 0.2
rpoB 761612 c.1806G>T synonymous_variant 0.19
rpoB 761615 c.1809A>C synonymous_variant 0.19
rpoB 761636 c.1830G>T synonymous_variant 0.21
rpoB 761645 c.1839C>G synonymous_variant 0.19
rpoB 762008 c.2202C>G synonymous_variant 0.19
rpoB 762011 c.2205G>C synonymous_variant 0.2
rpoB 762017 c.2211A>G synonymous_variant 0.18
rpoB 762020 c.2214G>A synonymous_variant 0.18
rpoB 762024 p.Val740Ile missense_variant 0.18
rpoB 762053 c.2247T>C synonymous_variant 0.26
rpoB 762062 c.2256T>C synonymous_variant 0.22
rpoB 762065 c.2259T>C synonymous_variant 0.27
rpoB 762071 c.2265C>T synonymous_variant 0.27
rpoB 762083 c.2277T>C synonymous_variant 0.2
rpoB 762086 c.2280G>C synonymous_variant 0.23
rpoB 762114 p.Ile770Val missense_variant 0.24
rpoB 762119 c.2313C>T synonymous_variant 0.23
rpoB 762131 c.2325C>G synonymous_variant 0.22
rpoB 762134 c.2328C>G synonymous_variant 0.22
rpoB 762167 c.2361T>C synonymous_variant 0.19
rpoB 762185 c.2379G>C synonymous_variant 0.21
rpoC 762380 c.-990T>C upstream_gene_variant 0.14
rpoC 762395 c.-975G>C upstream_gene_variant 0.15
rpoC 762470 c.-900G>C upstream_gene_variant 0.17
rpoB 762510 p.Ala902Pro missense_variant 0.2
rpoC 762518 c.-852C>G upstream_gene_variant 0.27
rpoC 762533 c.-837T>C upstream_gene_variant 0.27
rpoC 762536 c.-834T>C upstream_gene_variant 0.32
rpoC 762537 c.-833T>C upstream_gene_variant 0.32
rpoC 762551 c.-819C>T upstream_gene_variant 0.29
rpoC 762557 c.-813G>C upstream_gene_variant 0.24
rpoC 762581 c.-789T>C upstream_gene_variant 0.17
rpoC 762582 c.-788T>C upstream_gene_variant 0.17
rpoC 762587 c.-783G>A upstream_gene_variant 0.17
rpoC 762599 c.-771T>A upstream_gene_variant 0.2
rpoC 762605 c.-765T>C upstream_gene_variant 0.16
rpoB 762799 p.Ala998Gly missense_variant 0.15
rpoC 762857 c.-513C>G upstream_gene_variant 0.24
rpoC 762860 c.-510G>T upstream_gene_variant 0.23
rpoC 762899 c.-471G>C upstream_gene_variant 0.19
rpoC 762929 c.-441G>C upstream_gene_variant 0.21
rpoC 762995 c.-375G>C upstream_gene_variant 0.17
rpoC 763028 c.-342T>C upstream_gene_variant 0.15
rpoC 763031 c.-339T>G upstream_gene_variant 0.16
rpoC 763034 c.-336C>G upstream_gene_variant 0.15
rpoC 763040 c.-330C>G upstream_gene_variant 0.18
rpoC 763050 c.-320C>T upstream_gene_variant 0.2
rpoC 763070 c.-300T>C upstream_gene_variant 0.19
rpoC 763076 c.-294C>T upstream_gene_variant 0.21
rpoC 763085 c.-285C>G upstream_gene_variant 0.24
rpoC 763094 c.-276G>C upstream_gene_variant 0.2
rpoC 763115 c.-255T>C upstream_gene_variant 0.16
rpoC 763408 c.39T>C synonymous_variant 0.2
rpoC 763411 c.42T>G synonymous_variant 0.19
rpoC 763414 c.45T>C synonymous_variant 0.19
rpoC 763430 c.61A>C synonymous_variant 0.22
rpoC 763435 c.66A>G synonymous_variant 0.23
rpoC 763444 c.75T>C synonymous_variant 0.26
rpoC 763456 c.87A>G synonymous_variant 0.31
rpoC 763468 c.99G>C synonymous_variant 0.35
rpoC 763486 c.117T>C synonymous_variant 0.38
rpoC 763505 c.136C>T synonymous_variant 0.35
rpoC 763561 c.192G>A synonymous_variant 0.28
rpoC 763600 c.231C>T synonymous_variant 0.32
rpoC 763606 c.237C>T synonymous_variant 0.32
rpoC 763618 c.249C>A synonymous_variant 0.28
rpoC 763633 c.264T>C synonymous_variant 0.3
rpoC 763636 c.267T>G synonymous_variant 0.29
rpoC 763639 c.270G>A synonymous_variant 0.25
rpoC 763658 c.289_291delCTTinsTTG synonymous_variant 0.23
rpoC 763666 c.297G>A synonymous_variant 0.24
rpoC 763801 c.432C>G synonymous_variant 0.14
rpoC 763987 c.618C>T synonymous_variant 0.14
rpoC 763996 c.627T>C synonymous_variant 0.14
rpoC 764005 c.636G>C synonymous_variant 0.3
rpoC 764011 c.642T>C synonymous_variant 0.27
rpoC 764024 c.655T>C synonymous_variant 0.25
rpoC 764040 p.Ser224Asn missense_variant 0.24
rpoC 764044 c.675T>C synonymous_variant 0.25
rpoC 764059 c.690G>C synonymous_variant 0.2
rpoC 764083 c.714A>G synonymous_variant 0.17
rpoC 764131 c.762T>C synonymous_variant 0.19
rpoC 764140 c.771C>T synonymous_variant 0.24
rpoC 764161 c.792G>C synonymous_variant 0.31
rpoC 764203 c.834G>C synonymous_variant 0.29
rpoC 764206 p.Asp279Glu missense_variant 0.27
rpoC 764217 p.Asn283Ser missense_variant 0.26
rpoC 764254 c.885G>C synonymous_variant 0.21
rpoC 764266 c.897T>C synonymous_variant 0.17
rpoC 764269 c.900G>C synonymous_variant 0.17
rpoC 764272 c.903G>T synonymous_variant 0.17
rpoC 764278 c.909A>G synonymous_variant 0.17
rpoC 764284 c.915G>C synonymous_variant 0.18
rpoC 764404 c.1035C>A synonymous_variant 0.13
rpoC 764405 c.1036A>C synonymous_variant 0.13
rpoC 764458 c.1089G>C synonymous_variant 0.18
rpoC 764461 c.1092A>G synonymous_variant 0.23
rpoC 764497 c.1128A>G synonymous_variant 0.14
rpoC 764648 c.1279C>A synonymous_variant 0.21
rpoC 764653 c.1284G>C synonymous_variant 0.21
rpoC 764656 c.1287C>T synonymous_variant 0.2
rpoC 764668 c.1299C>T synonymous_variant 0.18
rpoC 764674 c.1305G>A synonymous_variant 0.18
rpoC 764681 c.1312C>T synonymous_variant 0.2
rpoC 764746 c.1377G>T synonymous_variant 0.29
rpoC 764752 c.1383G>C synonymous_variant 0.26
rpoC 764755 c.1386C>T synonymous_variant 0.24
rpoC 764764 c.1395T>C synonymous_variant 0.23
rpoC 764767 c.1398G>C synonymous_variant 0.24
rpoC 764791 c.1422C>G synonymous_variant 0.2
rpoC 764800 c.1431G>A synonymous_variant 0.18
rpoC 764803 c.1434C>T synonymous_variant 0.17
rpoC 764809 c.1440C>T synonymous_variant 0.17
rpoC 764815 c.1446A>G synonymous_variant 0.19
rpoC 764830 c.1461C>G synonymous_variant 0.17
rpoC 764833 c.1464A>G synonymous_variant 0.15
rpoC 764872 c.1503A>G synonymous_variant 0.19
rpoC 764875 c.1506C>A synonymous_variant 0.19
rpoC 764888 c.1519_1521delTTGinsCTC synonymous_variant 0.2
rpoC 764902 c.1533C>G synonymous_variant 0.24
rpoC 764911 c.1542A>G synonymous_variant 0.24
rpoC 764918 p.Val517Ile missense_variant 0.2
rpoC 764923 c.1554A>G synonymous_variant 0.2
rpoC 764932 c.1563C>G synonymous_variant 0.2
rpoC 764948 c.1579T>C synonymous_variant 0.2
rpoC 765383 p.Met672Leu missense_variant 0.22
rpoC 765395 c.2026C>T synonymous_variant 0.31
rpoC 765405 p.Leu679Pro missense_variant 0.27
rpoC 765409 c.2040T>C synonymous_variant 0.23
rpoC 765430 c.2061G>A synonymous_variant 0.29
rpoC 765445 c.2076G>T synonymous_variant 0.24
rpoC 765451 c.2082C>G synonymous_variant 0.23
rpoC 765452 p.Ala695Ser missense_variant 0.23
rpoC 765478 c.2109T>C synonymous_variant 0.21
rpoC 765496 c.2127C>G synonymous_variant 0.16
rpoC 765499 c.2130C>G synonymous_variant 0.17
rpoC 765526 c.2157C>G synonymous_variant 0.16
rpoC 765541 c.2172C>A synonymous_variant 0.17
rpoC 765547 c.2178C>A synonymous_variant 0.19
rpoC 765553 c.2184C>T synonymous_variant 0.17
rpoC 765556 c.2187G>C synonymous_variant 0.17
rpoC 765562 c.2193G>C synonymous_variant 0.18
rpoC 765688 c.2319G>C synonymous_variant 0.17
rpoC 765689 c.2320C>T synonymous_variant 0.17
rpoC 765694 c.2325G>C synonymous_variant 0.17
rpoC 765700 c.2331T>C synonymous_variant 0.17
rpoC 765724 c.2355C>G synonymous_variant 0.29
rpoC 765727 c.2358T>C synonymous_variant 0.31
rpoC 765734 c.2365T>C synonymous_variant 0.21
rpoC 765748 c.2379C>T synonymous_variant 0.18
rpoC 765811 c.2442T>C synonymous_variant 0.18
rpoC 765814 c.2445A>G synonymous_variant 0.17
rpoC 765826 c.2457T>A synonymous_variant 0.26
rpoC 765835 c.2466C>T synonymous_variant 0.26
rpoC 765850 c.2481G>C synonymous_variant 0.31
rpoC 765883 c.2514C>G synonymous_variant 0.36
rpoC 765886 c.2517C>G synonymous_variant 0.38
rpoC 765892 c.2523T>C synonymous_variant 0.35
rpoC 765910 c.2541G>C synonymous_variant 0.33
rpoC 765934 c.2565C>T synonymous_variant 0.38
rpoC 765952 c.2583G>C synonymous_variant 0.37
rpoC 765967 c.2598C>T synonymous_variant 0.33
rpoC 765979 c.2610C>G synonymous_variant 0.31
rpoC 765994 c.2625A>T synonymous_variant 0.33
rpoC 765997 c.2628T>C synonymous_variant 0.35
rpoC 766021 c.2652G>C synonymous_variant 0.18
rpoC 766300 c.2931C>G synonymous_variant 0.15
rpoC 766306 c.2937C>T synonymous_variant 0.15
rpoC 766312 c.2943T>C synonymous_variant 0.17
rpoC 766315 c.2946C>G synonymous_variant 0.16
rpoC 766351 c.2982C>G synonymous_variant 0.14
rpoC 766360 c.2991C>T synonymous_variant 0.15
rpoC 766426 c.3057C>T synonymous_variant 0.24
rpoC 766483 c.3114G>C synonymous_variant 0.24
rpoC 766486 c.3117A>G synonymous_variant 0.25
rpoC 766492 c.3123T>C synonymous_variant 0.26
rpoC 766495 c.3126C>T synonymous_variant 0.27
rpoC 766519 c.3150C>A synonymous_variant 0.26
rpoC 766528 c.3159T>C synonymous_variant 0.19
rpoC 766534 c.3165C>G synonymous_variant 0.17
rpoC 766537 c.3168G>A synonymous_variant 0.17
rpoC 766543 c.3174C>T synonymous_variant 0.17
rpoC 766549 c.3180G>T synonymous_variant 0.15
rpoC 766672 c.3303T>C synonymous_variant 0.17
rpoC 766681 c.3312C>T synonymous_variant 0.18
rpoC 766684 c.3315C>G synonymous_variant 0.19
rpoC 766700 c.3331C>T synonymous_variant 0.24
rpoC 766714 c.3345G>C synonymous_variant 0.22
rpoC 766726 c.3357T>C synonymous_variant 0.21
rpoC 766747 c.3378C>T synonymous_variant 0.26
rpoC 766765 c.3396A>C synonymous_variant 0.29
rpoC 766774 c.3405T>C synonymous_variant 0.27
rpoC 766792 c.3423C>G synonymous_variant 0.2
rpoC 766795 c.3426C>T synonymous_variant 0.2
rpoC 766801 c.3432C>T synonymous_variant 0.22
rpoC 766804 c.3435A>G synonymous_variant 0.22
rpoC 766843 c.3474T>G synonymous_variant 0.17
rpoC 766864 c.3495G>C synonymous_variant 0.18
rpoC 766894 c.3525T>C synonymous_variant 0.15
rpoC 766895 c.3526T>C synonymous_variant 0.15
rpoC 766933 c.3564A>G synonymous_variant 0.15
rpoC 766945 c.3576A>G synonymous_variant 0.15
rpoC 766996 c.3627C>T synonymous_variant 0.17
rpoC 767002 c.3633G>C synonymous_variant 0.2
rpoC 767033 c.3664_3666delTCGinsAGT synonymous_variant 0.21
rpoC 767059 c.3690T>G synonymous_variant 0.21
rpoC 767062 c.3693C>A synonymous_variant 0.23
rpoC 767098 c.3729T>C synonymous_variant 0.2
rpoC 767119 c.3750A>G synonymous_variant 0.28
rpoC 767167 c.3798C>T synonymous_variant 0.26
rpoC 767180 p.Ala1271Gln missense_variant 0.26
rpoC 767185 c.3816G>T synonymous_variant 0.26
rpoC 767191 c.3822C>G synonymous_variant 0.25
rpoC 767200 c.3831G>A synonymous_variant 0.24
rpoC 767206 c.3837C>A synonymous_variant 0.22
rpoC 767209 c.3840T>G synonymous_variant 0.2
rpoC 767212 c.3843G>C synonymous_variant 0.17
rpoC 767221 c.3852C>G synonymous_variant 0.19
rpoC 767233 c.3864T>C synonymous_variant 0.19
mmpL5 775639 p.Ile948Val missense_variant 1.0
mmpL5 776802 p.Met560Thr missense_variant 1.0
mmpL5 777451 p.Val344Leu missense_variant 1.0
rpsL 781395 c.-165T>C upstream_gene_variant 1.0
rpsL 781586 c.27C>A synonymous_variant 0.14
rpsL 781608 p.Ser17Ala missense_variant 0.14
rpsL 781649 c.90T>C synonymous_variant 0.18
rpsL 781658 c.99A>G synonymous_variant 0.17
rpsL 781664 c.105C>T synonymous_variant 0.16
rpsL 781667 c.108C>G synonymous_variant 0.16
rpsL 781709 c.150G>C synonymous_variant 0.2
rpsL 781715 c.156T>C synonymous_variant 0.2
rpsL 781718 c.159C>G synonymous_variant 0.2
rpsL 781721 c.162C>G synonymous_variant 0.21
rpsL 781728 c.169T>C synonymous_variant 0.22
rpsL 781742 c.183C>T synonymous_variant 0.19
rpsL 781760 c.201T>C synonymous_variant 0.18
rpsL 781916 c.357T>C synonymous_variant 0.16
rpsL 781929 p.Gly124Ser missense_variant 0.18
rplC 800612 c.-197A>G upstream_gene_variant 0.19
rplC 800618 c.-191T>C upstream_gene_variant 0.19
rplC 800648 c.-161A>C upstream_gene_variant 0.16
rplC 800693 c.-116A>C upstream_gene_variant 0.23
rplC 800714 c.-95C>T upstream_gene_variant 0.16
rplC 800715 c.-94A>C upstream_gene_variant 0.16
rplC 800720 c.-89T>C upstream_gene_variant 0.17
rplC 800723 c.-86C>G upstream_gene_variant 0.17
rplC 800735 c.-74C>G upstream_gene_variant 0.2
rplC 800738 c.-71T>C upstream_gene_variant 0.2
rplC 800744 c.-65G>C upstream_gene_variant 0.21
rplC 800771 c.-38C>T upstream_gene_variant 0.19
rplC 800783 c.-26C>T upstream_gene_variant 0.15
rplC 800797 c.-12T>G upstream_gene_variant 0.15
rplC 800817 c.9A>C synonymous_variant 0.19
rplC 801174 c.366T>C synonymous_variant 0.15
rplC 801339 c.531T>G synonymous_variant 0.15
rplC 801341 p.Leu178Gln missense_variant 0.15
rplC 801348 c.540T>G synonymous_variant 0.15
rplC 801357 c.549T>C synonymous_variant 0.15
fbiC 1303494 p.Leu188Phe missense_variant 0.15
fbiC 1303503 c.573G>C synonymous_variant 0.16
fbiC 1303509 c.579G>C synonymous_variant 0.14
fbiC 1303512 c.582T>G synonymous_variant 0.16
fbiC 1303545 c.615A>G synonymous_variant 0.17
fbiC 1303551 c.621G>C synonymous_variant 0.17
fbiC 1303578 c.648G>A synonymous_variant 0.2
fbiC 1303584 c.654C>A synonymous_variant 0.2
fbiC 1303590 c.660A>G synonymous_variant 0.15
fbiC 1303605 c.675C>G synonymous_variant 0.16
fbiC 1303611 c.681G>C synonymous_variant 0.18
fbiC 1303614 c.684C>G synonymous_variant 0.16
fbiC 1303632 c.702T>G synonymous_variant 0.2
fbiC 1303683 p.Leu251Phe missense_variant 0.16
fbiC 1303689 c.759T>C synonymous_variant 0.16
fbiC 1303695 c.765T>C synonymous_variant 0.15
fbiC 1303731 c.801A>G synonymous_variant 0.15
fbiC 1303732 p.Ser268Thr missense_variant 0.15
fbiC 1303737 c.807G>A synonymous_variant 0.16
fbiC 1303752 c.822A>G synonymous_variant 0.16
fbiC 1303768 p.Ser280Ala missense_variant 0.19
fbiC 1304031 c.1101C>G synonymous_variant 0.16
fbiC 1304049 c.1119T>G synonymous_variant 0.21
fbiC 1304055 p.Asp375Glu missense_variant 0.22
fbiC 1304058 p.Glu376Asp missense_variant 0.21
fbiC 1304059 c.1129C>T synonymous_variant 0.21
fbiC 1304064 c.1134G>C synonymous_variant 0.21
fbiC 1304067 c.1137G>C synonymous_variant 0.21
fbiC 1304074 p.Ala382Ser missense_variant 0.2
fbiC 1304079 c.1149A>G synonymous_variant 0.21
fbiC 1304091 c.1161C>T synonymous_variant 0.21
fbiC 1304092 p.Met388Leu missense_variant 0.21
fbiC 1304112 c.1182G>A synonymous_variant 0.24
fbiC 1304142 c.1212G>C synonymous_variant 0.17
fbiC 1304163 c.1233G>C synonymous_variant 0.28
fbiC 1304164 p.Gly412Arg missense_variant 0.28
fbiC 1304172 c.1242G>T synonymous_variant 0.29
fbiC 1304174 p.Val415Ala missense_variant 0.29
fbiC 1304178 c.1248G>C synonymous_variant 0.29
fbiC 1304181 c.1251G>T synonymous_variant 0.29
fbiC 1304184 c.1254G>C synonymous_variant 0.29
fbiC 1304200 p.Leu424Phe missense_variant 0.21
fbiC 1304205 c.1275C>G synonymous_variant 0.19
fbiC 1304208 c.1278C>T synonymous_variant 0.2
fbiC 1304556 c.1626C>T synonymous_variant 0.14
fbiC 1304559 p.Glu543Asp missense_variant 0.17
fbiC 1304565 c.1635C>G synonymous_variant 0.21
fbiC 1304580 c.1650T>C synonymous_variant 0.2
fbiC 1304613 c.1683T>C synonymous_variant 0.17
fbiC 1304625 c.1695C>T synonymous_variant 0.2
fbiC 1304628 c.1698G>C synonymous_variant 0.24
fbiC 1304649 c.1719C>T synonymous_variant 0.22
fbiC 1304658 c.1728C>G synonymous_variant 0.19
fbiC 1304661 c.1731C>T synonymous_variant 0.19
fbiC 1304675 p.Gly582Asp missense_variant 0.19
fbiC 1304679 c.1749G>A synonymous_variant 0.19
fbiC 1304691 c.1761G>C synonymous_variant 0.19
fbiC 1304694 c.1764A>C synonymous_variant 0.2
fbiC 1304703 c.1773C>T synonymous_variant 0.18
fbiC 1304715 c.1785G>T synonymous_variant 0.23
fbiC 1304784 c.1854T>G synonymous_variant 0.18
fbiC 1304787 c.1857T>C synonymous_variant 0.18
fbiC 1304790 c.1860C>A synonymous_variant 0.18
fbiC 1304799 c.1869G>C synonymous_variant 0.19
fbiC 1304925 c.1995G>C synonymous_variant 0.15
fbiC 1304934 c.2004C>G synonymous_variant 0.15
fbiC 1304937 c.2007G>C synonymous_variant 0.17
fbiC 1304940 c.2010A>G synonymous_variant 0.17
fbiC 1304943 c.2013C>T synonymous_variant 0.2
fbiC 1304946 c.2016G>C synonymous_variant 0.21
fbiC 1304958 c.2028T>G synonymous_variant 0.23
fbiC 1304994 c.2064A>G synonymous_variant 0.14
fbiC 1305126 c.2196T>C synonymous_variant 0.16
Rv1258c 1406553 p.Ala263Val missense_variant 0.14
Rv1258c 1406556 p.Trp262Ser missense_variant 0.14
Rv1258c 1407254 c.87G>A synonymous_variant 0.14
embR 1416997 c.351C>T synonymous_variant 0.14
atpE 1461101 c.57T>C synonymous_variant 0.21
atpE 1461107 c.63C>G synonymous_variant 0.2
atpE 1461131 c.87T>C synonymous_variant 0.16
atpE 1461185 c.141G>A synonymous_variant 0.14
atpE 1461197 c.153A>C synonymous_variant 0.17
rrs 1471659 n.-187C>T upstream_gene_variant 1.0
rrs 1471935 n.90T>C non_coding_transcript_exon_variant 0.2
rrs 1471969 n.124T>C non_coding_transcript_exon_variant 0.16
rrs 1471970 n.125G>A non_coding_transcript_exon_variant 0.16
rrs 1471984 n.139T>A non_coding_transcript_exon_variant 0.17
rrs 1471985 n.140T>C non_coding_transcript_exon_variant 0.17
rrs 1472075 n.230A>G non_coding_transcript_exon_variant 0.18
rrl 1473541 n.-117G>A upstream_gene_variant 0.14
rrl 1473571 n.-87C>T upstream_gene_variant 0.21
rrl 1473592 n.-66_-65insA upstream_gene_variant 0.18
rrl 1473600 n.-58A>G upstream_gene_variant 0.19
rrl 1473603 n.-55C>T upstream_gene_variant 0.24
rrl 1473607 n.-50_-49delGG upstream_gene_variant 0.18
rrl 1473613 n.-45G>C upstream_gene_variant 0.17
rrl 1473614 n.-44C>G upstream_gene_variant 0.17
rrl 1473618 n.-40G>A upstream_gene_variant 0.17
rrl 1473626 n.-32_-31insT upstream_gene_variant 0.21
rrl 1473648 n.-9_-7delTTG upstream_gene_variant 0.17
rrl 1473731 n.74T>A non_coding_transcript_exon_variant 0.15
rrl 1473806 n.149C>T non_coding_transcript_exon_variant 0.2
rrl 1473877 n.220G>A non_coding_transcript_exon_variant 0.29
rrl 1473887 n.230T>A non_coding_transcript_exon_variant 0.31
rrl 1473888 n.231T>A non_coding_transcript_exon_variant 0.31
rrl 1473898 n.241C>T non_coding_transcript_exon_variant 0.3
rrl 1473924 n.267_268insT non_coding_transcript_exon_variant 0.23
rrl 1473986 n.329T>C non_coding_transcript_exon_variant 0.24
rrl 1473995 n.338G>T non_coding_transcript_exon_variant 0.27
rrl 1474009 n.352A>G non_coding_transcript_exon_variant 0.32
rrl 1474034 n.377G>A non_coding_transcript_exon_variant 0.32
rrl 1474083 n.426C>T non_coding_transcript_exon_variant 0.35
rrl 1474103 n.446A>T non_coding_transcript_exon_variant 0.29
rrl 1474140 n.483C>T non_coding_transcript_exon_variant 0.25
rrl 1474151 n.494C>T non_coding_transcript_exon_variant 0.23
rrl 1474201 n.544T>A non_coding_transcript_exon_variant 0.16
rrl 1474376 n.719T>C non_coding_transcript_exon_variant 0.24
rrl 1474632 n.975G>T non_coding_transcript_exon_variant 0.26
rrl 1474639 n.982G>A non_coding_transcript_exon_variant 0.23
rrl 1474673 n.1016T>C non_coding_transcript_exon_variant 0.25
rrl 1474717 n.1060A>T non_coding_transcript_exon_variant 0.36
rrl 1474794 n.1137C>A non_coding_transcript_exon_variant 0.24
rrl 1474831 n.1174A>G non_coding_transcript_exon_variant 0.15
rrl 1475028 n.1371G>A non_coding_transcript_exon_variant 0.19
rrl 1475061 n.1404C>T non_coding_transcript_exon_variant 0.31
rrl 1475266 n.1609T>C non_coding_transcript_exon_variant 0.15
rrl 1475273 n.1616T>G non_coding_transcript_exon_variant 0.14
rrl 1475289 n.1632G>A non_coding_transcript_exon_variant 0.15
rrl 1475290 n.1633A>G non_coding_transcript_exon_variant 0.15
rrl 1475291 n.1634A>C non_coding_transcript_exon_variant 0.15
rrl 1475429 n.1772G>A non_coding_transcript_exon_variant 0.15
rrl 1475638 n.1981C>T non_coding_transcript_exon_variant 0.19
rrl 1475659 n.2002G>A non_coding_transcript_exon_variant 0.21
rrl 1475988 n.2331A>G non_coding_transcript_exon_variant 0.31
rrl 1476035 n.2378G>A non_coding_transcript_exon_variant 0.18
rrl 1476049 n.2392C>T non_coding_transcript_exon_variant 0.17
rrl 1476619 n.2962C>T non_coding_transcript_exon_variant 0.19
rrl 1476628 n.2971T>A non_coding_transcript_exon_variant 0.18
rrl 1476679 n.3022T>C non_coding_transcript_exon_variant 0.22
rrl 1476726 n.3069A>G non_coding_transcript_exon_variant 0.17
inhA 1673493 c.-709C>T upstream_gene_variant 0.14
inhA 1673499 c.-703T>C upstream_gene_variant 0.16
inhA 1673505 c.-697A>T upstream_gene_variant 0.18
inhA 1673517 c.-685G>A upstream_gene_variant 0.17
inhA 1673535 c.-667A>G upstream_gene_variant 0.19
inhA 1673547 c.-655T>C upstream_gene_variant 0.21
inhA 1673568 c.-634C>G upstream_gene_variant 0.18
inhA 1673574 c.-628C>G upstream_gene_variant 0.18
inhA 1673685 c.-517C>T upstream_gene_variant 0.17
inhA 1673724 c.-478A>G upstream_gene_variant 0.14
inhA 1673730 c.-472C>G upstream_gene_variant 0.14
fabG1 1673733 p.Met98Ile missense_variant 0.15
inhA 1673736 c.-466G>A upstream_gene_variant 0.16
inhA 1673745 c.-457G>A upstream_gene_variant 0.15
inhA 1673748 c.-454A>G upstream_gene_variant 0.14
fabG1 1673749 p.Lys104Arg missense_variant 0.15
inhA 1674015 c.-187C>A upstream_gene_variant 0.17
inhA 1674018 c.-184G>C upstream_gene_variant 0.17
inhA 1674024 c.-178T>C upstream_gene_variant 0.2
inhA 1674033 c.-169T>C upstream_gene_variant 0.16
fabG1 1674037 p.Gln200Glu missense_variant 0.15
fabG1 1674079 p.Pro214Ala missense_variant 0.14
inhA 1674472 p.Val91Leu missense_variant 0.14
inhA 1674477 c.276G>C synonymous_variant 0.19
inhA 1674480 c.279T>C synonymous_variant 0.19
inhA 1674486 c.285T>C synonymous_variant 0.18
inhA 1674489 c.288G>C synonymous_variant 0.17
inhA 1674501 c.300G>A synonymous_variant 0.17
inhA 1674503 p.Thr101Ser missense_variant 0.17
inhA 1674513 c.312C>G synonymous_variant 0.15
inhA 1674675 c.474C>T synonymous_variant 0.15
inhA 1674756 c.555T>C synonymous_variant 0.15
inhA 1674852 c.651G>A synonymous_variant 0.13
inhA 1674903 c.702T>C synonymous_variant 0.15
inhA 1674904 p.Ala235Pro missense_variant 0.15
rpsA 1833554 p.Thr5Ala missense_variant 0.26
rpsA 1833589 c.48A>T synonymous_variant 0.31
rpsA 1833593 p.Ser18Thr missense_variant 0.31
rpsA 1833604 c.63C>T synonymous_variant 0.32
rpsA 1833610 c.69C>A synonymous_variant 0.35
rpsA 1833661 c.120A>G synonymous_variant 0.21
rpsA 1833664 c.123C>A synonymous_variant 0.21
rpsA 1833694 c.153G>T synonymous_variant 0.25
rpsA 1833718 c.177C>T synonymous_variant 0.3
rpsA 1833724 c.183C>G synonymous_variant 0.34
rpsA 1833727 c.186G>C synonymous_variant 0.36
rpsA 1833742 c.201A>G synonymous_variant 0.25
rpsA 1833745 c.204G>C synonymous_variant 0.23
rpsA 1833754 c.213G>A synonymous_variant 0.23
rpsA 1833802 c.261A>G synonymous_variant 0.18
rpsA 1833856 c.315A>G synonymous_variant 0.18
rpsA 1833874 c.333T>C synonymous_variant 0.2
rpsA 1833928 c.387G>C synonymous_variant 0.19
rpsA 1833949 c.408T>C synonymous_variant 0.2
rpsA 1833979 c.438T>C synonymous_variant 0.15
rpsA 1834000 c.459G>C synonymous_variant 0.18
rpsA 1834015 c.474G>C synonymous_variant 0.17
rpsA 1834024 c.483G>A synonymous_variant 0.17
rpsA 1834051 c.510G>A synonymous_variant 0.16
rpsA 1834249 c.708T>C synonymous_variant 0.2
rpsA 1834261 c.720A>G synonymous_variant 0.22
rpsA 1834264 c.723G>C synonymous_variant 0.21
rpsA 1834297 c.756C>T synonymous_variant 0.27
rpsA 1834303 c.762T>G synonymous_variant 0.23
rpsA 1834306 c.765T>C synonymous_variant 0.22
rpsA 1834336 c.795C>G synonymous_variant 0.17
rpsA 1834339 c.798C>T synonymous_variant 0.2
rpsA 1834348 c.807T>C synonymous_variant 0.18
rpsA 1834366 c.825A>G synonymous_variant 0.15
rpsA 1834369 c.828C>G synonymous_variant 0.15
rpsA 1834375 c.834G>A synonymous_variant 0.17
rpsA 1834396 c.855G>C synonymous_variant 0.15
rpsA 1834411 c.870T>C synonymous_variant 0.26
rpsA 1834417 c.876G>C synonymous_variant 0.27
rpsA 1834423 c.882G>C synonymous_variant 0.33
rpsA 1834451 c.910T>C synonymous_variant 0.25
rpsA 1834456 c.915T>G synonymous_variant 0.24
rpsA 1834468 c.927A>G synonymous_variant 0.24
rpsA 1834489 c.948T>C synonymous_variant 0.2
rpsA 1834495 c.954G>A synonymous_variant 0.22
rpsA 1834546 c.1005T>C synonymous_variant 0.18
rpsA 1834609 c.1068T>C synonymous_variant 0.23
rpsA 1834615 c.1074C>T synonymous_variant 0.22
rpsA 1834618 c.1077G>C synonymous_variant 0.23
rpsA 1834633 c.1092A>G synonymous_variant 0.23
rpsA 1834639 c.1098T>C synonymous_variant 0.22
rpsA 1834690 c.1149T>C synonymous_variant 0.24
tlyA 1917948 c.9A>G synonymous_variant 0.16
tlyA 1917965 p.Ala9Val missense_variant 0.19
tlyA 1917972 c.33A>G synonymous_variant 1.0
tlyA 1917975 c.36C>G synonymous_variant 0.18
tlyA 1917981 c.42G>C synonymous_variant 0.19
tlyA 1917987 c.48G>C synonymous_variant 0.18
tlyA 1917996 c.57A>C synonymous_variant 0.2
tlyA 1918002 p.Gln21His missense_variant 0.22
ndh 2101744 p.Asp433Glu missense_variant 0.14
katG 2155641 p.Lys157Asn missense_variant 0.15
katG 2155649 p.Tyr155His missense_variant 0.16
katG 2155680 c.432G>C synonymous_variant 0.22
katG 2155691 c.421T>C synonymous_variant 0.21
katG 2155722 c.390G>C synonymous_variant 0.17
PPE35 2169879 p.Phe245Cys missense_variant 1.0
Rv1979c 2223293 c.-129A>G upstream_gene_variant 0.93
kasA 2517941 c.-174C>G upstream_gene_variant 0.25
kasA 2517956 c.-159G>A upstream_gene_variant 0.24
kasA 2517989 c.-126T>C upstream_gene_variant 0.23
kasA 2518019 c.-96A>G upstream_gene_variant 0.21
kasA 2518025 c.-90G>C upstream_gene_variant 0.21
kasA 2518031 c.-84G>T upstream_gene_variant 0.17
kasA 2518034 c.-81T>C upstream_gene_variant 0.19
kasA 2518035 c.-80C>G upstream_gene_variant 0.19
kasA 2518041 c.-74T>C upstream_gene_variant 0.2
kasA 2518046 c.-69C>G upstream_gene_variant 0.18
kasA 2518049 c.-66G>C upstream_gene_variant 0.18
kasA 2518053 c.-62_-60delATTinsCTC upstream_gene_variant 0.18
kasA 2518248 p.Ala45Val missense_variant 0.2
kasA 2518252 c.138C>T synonymous_variant 0.19
kasA 2518279 c.165T>C synonymous_variant 0.22
kasA 2518283 p.Ala57Pro missense_variant 0.2
kasA 2518297 c.183C>T synonymous_variant 0.16
kasA 2518300 c.186T>C synonymous_variant 0.15
kasA 2518504 c.390T>C synonymous_variant 0.17
kasA 2518506 p.Ala131Glu missense_variant 0.21
kasA 2518513 c.399C>G synonymous_variant 0.2
kasA 2518519 c.405G>C synonymous_variant 0.17
kasA 2518534 c.420G>C synonymous_variant 0.22
kasA 2518537 c.423C>G synonymous_variant 0.22
kasA 2518561 c.447T>C synonymous_variant 0.29
kasA 2518567 c.453G>T synonymous_variant 0.27
kasA 2518573 c.459G>C synonymous_variant 0.26
kasA 2518574 p.Ile154Val missense_variant 0.26
kasA 2518588 c.474T>C synonymous_variant 0.4
kasA 2518591 c.477G>C synonymous_variant 0.39
kasA 2518618 c.504G>C synonymous_variant 0.5
kasA 2518633 c.519G>C synonymous_variant 0.5
kasA 2518642 c.528A>G synonymous_variant 0.53
kasA 2518645 c.531G>C synonymous_variant 0.62
kasA 2518648 c.534C>T synonymous_variant 0.57
kasA 2518672 c.558G>C synonymous_variant 0.55
kasA 2518681 c.567C>T synonymous_variant 0.53
kasA 2518684 c.570C>A synonymous_variant 0.53
kasA 2518711 c.597A>G synonymous_variant 0.5
kasA 2518714 c.600A>T synonymous_variant 0.54
kasA 2518735 c.621C>A synonymous_variant 0.48
kasA 2518744 c.630C>T synonymous_variant 0.41
kasA 2518747 c.633C>G synonymous_variant 0.37
kasA 2518756 c.642G>C synonymous_variant 0.32
kasA 2518783 c.669T>C synonymous_variant 0.25
kasA 2518789 c.675G>T synonymous_variant 0.26
kasA 2518795 c.681C>G synonymous_variant 0.25
kasA 2518798 c.684G>C synonymous_variant 0.24
kasA 2518816 c.702C>T synonymous_variant 0.19
kasA 2518822 c.708C>T synonymous_variant 0.19
kasA 2518825 c.711T>C synonymous_variant 0.19
kasA 2518855 c.741C>G synonymous_variant 0.24
kasA 2518856 p.Ile248Leu missense_variant 0.25
kasA 2518864 c.750G>C synonymous_variant 0.31
kasA 2518885 c.771T>C synonymous_variant 0.43
kasA 2518894 c.780G>A synonymous_variant 0.5
kasA 2518903 c.789C>T synonymous_variant 0.47
kasA 2518906 c.792A>G synonymous_variant 0.5
kasA 2518910 c.796C>T synonymous_variant 0.5
kasA 2518939 c.825T>C synonymous_variant 0.32
kasA 2518942 c.828T>C synonymous_variant 0.33
kasA 2518951 c.837G>A synonymous_variant 0.26
kasA 2518960 c.846C>G synonymous_variant 0.26
kasA 2518963 c.849T>C synonymous_variant 0.18
kasA 2519239 c.1125A>C synonymous_variant 0.13
kasA 2519266 c.1152C>T synonymous_variant 0.14
ahpC 2726142 c.-51G>A upstream_gene_variant 1.0
pepQ 2860317 c.102A>C synonymous_variant 0.14
pepQ 2860329 c.90G>C synonymous_variant 0.2
pepQ 2860332 c.87C>T synonymous_variant 0.19
pepQ 2860345 p.Ser25Thr missense_variant 0.19
pepQ 2860349 p.Ile24Val missense_variant 0.19
pepQ 2860364 c.55T>C synonymous_variant 0.14
pepQ 2860370 p.Ser17Ala missense_variant 0.15
pepQ 2860375 p.Ala15Gly missense_variant 0.14
pepQ 2860377 c.42C>T synonymous_variant 0.14
pepQ 2860389 c.30G>C synonymous_variant 0.18
pepQ 2860392 p.Lys9Asn missense_variant 0.18
pepQ 2860397 p.Asp8His missense_variant 0.18
Rv2752c 3064590 c.1602C>T synonymous_variant 0.23
Rv2752c 3064596 c.1596G>C synonymous_variant 0.22
Rv2752c 3064599 c.1593A>G synonymous_variant 0.22
Rv2752c 3064602 c.1590T>G synonymous_variant 0.21
Rv2752c 3064612 p.Ile527Thr missense_variant 0.18
Rv2752c 3064614 c.1578G>C synonymous_variant 0.18
Rv2752c 3064635 c.1557G>C synonymous_variant 0.19
Rv2752c 3064640 c.1552T>C synonymous_variant 0.17
Rv2752c 3064653 c.1539A>G synonymous_variant 0.17
Rv2752c 3064656 c.1536G>A synonymous_variant 0.17
Rv2752c 3064659 c.1533G>C synonymous_variant 0.17
Rv2752c 3065556 c.636G>A synonymous_variant 0.24
Rv2752c 3065580 c.612G>C synonymous_variant 0.24
Rv2752c 3065583 c.609G>C synonymous_variant 0.22
Rv2752c 3065594 c.598C>T synonymous_variant 0.23
Rv2752c 3065595 p.Leu199Phe missense_variant 0.23
Rv2752c 3065612 p.Thr194Ala missense_variant 0.26
Rv2752c 3065625 c.567G>C synonymous_variant 0.22
Rv2752c 3065634 c.558G>C synonymous_variant 0.17
Rv2752c 3065637 c.555A>G synonymous_variant 0.14
Rv2752c 3065640 c.552T>C synonymous_variant 0.14
Rv2752c 3065889 c.303G>C synonymous_variant 0.15
Rv2752c 3065892 c.300C>T synonymous_variant 0.14
Rv2752c 3065901 c.291A>T synonymous_variant 0.17
Rv2752c 3065916 c.276T>C synonymous_variant 0.18
Rv2752c 3065919 c.273G>C synonymous_variant 0.19
Rv2752c 3065925 c.267G>C synonymous_variant 0.21
Rv2752c 3065947 p.Gly82Ala missense_variant 0.25
Rv2752c 3065952 c.240C>G synonymous_variant 0.22
Rv2752c 3065958 c.234G>A synonymous_variant 0.81
thyX 3067316 c.630A>G synonymous_variant 0.15
thyX 3067331 c.615C>T synonymous_variant 0.17
thyX 3067355 c.591A>C synonymous_variant 0.27
thyX 3067373 c.573C>G synonymous_variant 0.27
thyX 3067391 c.555G>C synonymous_variant 0.27
thyX 3067394 c.552G>T synonymous_variant 0.27
thyX 3067406 c.540A>G synonymous_variant 0.32
thyX 3067427 c.519G>C synonymous_variant 0.29
thyX 3067430 c.516C>T synonymous_variant 0.29
thyX 3067439 c.507A>G synonymous_variant 0.23
thyX 3067445 c.501C>A synonymous_variant 0.25
thyX 3067451 c.495G>A synonymous_variant 0.2
thyX 3067457 c.489C>G synonymous_variant 0.2
thyX 3067463 p.Ile161Val missense_variant 0.15
thyX 3067466 c.480G>C synonymous_variant 0.18
thyX 3067475 c.471A>G synonymous_variant 0.29
thyA 3073953 c.519T>C synonymous_variant 0.18
thyA 3074123 p.Asp117Asn missense_variant 0.14
thyA 3074151 c.321G>A synonymous_variant 0.17
thyA 3074157 c.315C>G synonymous_variant 0.17
thyA 3074160 c.312A>T synonymous_variant 0.17
thyA 3074172 c.300G>C synonymous_variant 0.16
thyA 3074283 c.189G>A synonymous_variant 0.15
thyA 3074286 c.186T>C synonymous_variant 0.14
thyA 3074297 c.175C>T synonymous_variant 0.17
ald 3086742 c.-78A>C upstream_gene_variant 1.0
ald 3086788 c.-32T>C upstream_gene_variant 1.0
Rv3083 3448753 p.Tyr84His missense_variant 1.0
fprA 3473996 c.-11_-10insA upstream_gene_variant 1.0
fprA 3474138 c.132T>G synonymous_variant 0.14
fprA 3474147 c.141G>A synonymous_variant 0.14
fprA 3474150 c.144G>T synonymous_variant 0.15
fprA 3474162 c.156G>C synonymous_variant 0.16
fprA 3474168 c.162G>C synonymous_variant 0.17
fprA 3474174 c.168T>C synonymous_variant 0.14
fprA 3474997 p.Gly331Arg missense_variant 0.14
fbiA 3640365 c.-178C>G upstream_gene_variant 0.17
fbiB 3641948 c.414G>A synonymous_variant 0.14
fbiB 3641951 c.417G>C synonymous_variant 0.14
alr 3840473 c.948C>T synonymous_variant 0.14
alr 3840513 p.Arg303His missense_variant 0.14
alr 3840515 c.906A>G synonymous_variant 0.15
alr 3840527 c.894A>C synonymous_variant 0.16
rpoA 3877557 c.951C>G synonymous_variant 0.21
rpoA 3877567 p.Ser314Thr missense_variant 0.26
rpoA 3877569 c.939G>C synonymous_variant 0.28
rpoA 3877575 c.933C>T synonymous_variant 0.26
rpoA 3877587 c.921A>G synonymous_variant 0.28
rpoA 3877593 c.915C>T synonymous_variant 0.29
rpoA 3877602 c.906C>T synonymous_variant 0.29
rpoA 3877613 p.Ile299Val missense_variant 0.22
rpoA 3877620 c.888G>A synonymous_variant 0.21
rpoA 3877647 c.861C>A synonymous_variant 0.19
rpoA 3877656 c.852T>C synonymous_variant 0.15
rpoA 3877659 c.849G>A synonymous_variant 0.17
rpoA 3877830 c.678C>T synonymous_variant 0.18
rpoA 3877836 c.672A>G synonymous_variant 0.21
rpoA 3877839 c.669G>C synonymous_variant 0.22
rpoA 3877848 c.660C>T synonymous_variant 0.28
rpoA 3877875 c.633T>G synonymous_variant 0.29
rpoA 3877886 c.622C>T synonymous_variant 0.24
rpoA 3877896 c.612G>C synonymous_variant 0.26
rpoA 3877899 p.Ser203Thr missense_variant 0.26
rpoA 3877905 c.603A>G synonymous_variant 0.27
rpoA 3877909 p.Asn200Ser missense_variant 0.29
rpoA 3877926 c.582G>C synonymous_variant 0.25
rpoA 3877929 c.579C>T synonymous_variant 0.26
rpoA 3877950 c.558C>T synonymous_variant 0.21
rpoA 3877986 c.522G>C synonymous_variant 0.21
rpoA 3877989 c.519A>G synonymous_variant 0.24
rpoA 3878001 c.507A>G synonymous_variant 0.23
rpoA 3878022 c.486T>C synonymous_variant 0.23
rpoA 3878025 c.483C>T synonymous_variant 0.22
rpoA 3878028 c.480G>C synonymous_variant 0.21
rpoA 3878031 c.477T>C synonymous_variant 0.2
rpoA 3878043 c.465G>T synonymous_variant 0.22
rpoA 3878058 c.450G>C synonymous_variant 0.26
rpoA 3878061 c.447G>C synonymous_variant 0.24
rpoA 3878070 c.438T>C synonymous_variant 0.26
rpoA 3878085 c.423G>A synonymous_variant 0.25
rpoA 3878097 c.411G>A synonymous_variant 0.26
rpoA 3878100 c.408C>G synonymous_variant 0.27
rpoA 3878106 c.402G>C synonymous_variant 0.27
rpoA 3878118 c.390T>C synonymous_variant 0.28
rpoA 3878126 c.382C>T synonymous_variant 0.28
rpoA 3878127 c.381G>C synonymous_variant 0.3
rpoA 3878157 c.351C>G synonymous_variant 0.33
rpoA 3878163 c.345C>T synonymous_variant 0.34
rpoA 3878172 c.336G>C synonymous_variant 0.34
rpoA 3878193 c.315T>C synonymous_variant 0.31
rpoA 3878202 c.306G>C synonymous_variant 0.27
rpoA 3878211 c.297G>A synonymous_variant 0.27
rpoA 3878217 c.291A>G synonymous_variant 0.22
rpoA 3878247 c.261G>C synonymous_variant 0.24
rpoA 3878256 c.252G>C synonymous_variant 0.21
rpoA 3878262 c.246C>T synonymous_variant 0.2
rpoA 3878271 c.237T>C synonymous_variant 0.16
rpoA 3878283 p.Glu75Asp missense_variant 0.15
rpoA 3878292 c.216T>C synonymous_variant 0.17
rpoA 3878298 c.210A>G synonymous_variant 0.17
rpoA 3878322 c.186A>G synonymous_variant 0.18
rpoA 3878376 c.132G>A synonymous_variant 0.15
rpoA 3878424 c.84G>C synonymous_variant 0.14
rpoA 3878454 c.54A>G synonymous_variant 0.14
rpoA 3878472 p.Asp12Glu missense_variant 0.17
rpoA 3878478 c.30C>G synonymous_variant 0.18
rpoA 3878483 c.25C>T synonymous_variant 0.18
rpoA 3878490 c.18C>T synonymous_variant 0.19
rpoA 3878496 c.12A>T synonymous_variant 0.24
rpoA 3878512 c.-6_-5insGAA upstream_gene_variant 0.3
rpoA 3878548 c.-41C>A upstream_gene_variant 0.29
rpoA 3878672 c.-165A>T upstream_gene_variant 0.25
rpoA 3878680 c.-173C>T upstream_gene_variant 0.38
rpoA 3878698 c.-191A>C upstream_gene_variant 0.3
ddn 3986648 c.-196C>G upstream_gene_variant 0.19
ddn 3987092 p.Glu83Asp missense_variant 1.0
clpC1 4038238 p.Thr823Ala missense_variant 0.14
clpC1 4038239 c.2466T>C synonymous_variant 0.15
clpC1 4038271 p.Pro812Ala missense_variant 0.35
clpC1 4038272 c.2433T>C synonymous_variant 0.35
clpC1 4038278 c.2427T>C synonymous_variant 0.27
clpC1 4038302 c.2403C>G synonymous_variant 0.32
clpC1 4038308 c.2397G>C synonymous_variant 0.31
clpC1 4038314 c.2391T>G synonymous_variant 0.33
clpC1 4038335 c.2370C>T synonymous_variant 0.31
clpC1 4038344 c.2361G>A synonymous_variant 0.26
clpC1 4038350 c.2355C>G synonymous_variant 0.19
clpC1 4038356 c.2349T>C synonymous_variant 0.19
clpC1 4038359 c.2346A>G synonymous_variant 0.19
clpC1 4038368 c.2337T>C synonymous_variant 0.17
clpC1 4038383 c.2322G>A synonymous_variant 0.31
clpC1 4038388 c.2317T>C synonymous_variant 0.34
clpC1 4038392 c.2313C>T synonymous_variant 0.34
clpC1 4038398 c.2307G>T synonymous_variant 0.31
clpC1 4038403 c.2302T>C synonymous_variant 0.27
clpC1 4038407 c.2298G>C synonymous_variant 0.28
clpC1 4038419 c.2286T>C synonymous_variant 0.26
clpC1 4038436 p.Ala757Ser missense_variant 0.3
clpC1 4038444 p.Ala754Lys missense_variant 0.32
clpC1 4038446 c.2259T>C synonymous_variant 0.33
clpC1 4038456 p.Val750Glu missense_variant 0.28
clpC1 4038508 c.2197C>T synonymous_variant 0.2
clpC1 4038755 c.1950G>T synonymous_variant 0.18
clpC1 4038773 c.1932T>C synonymous_variant 0.23
clpC1 4038790 c.1915C>T synonymous_variant 0.25
clpC1 4038800 c.1905C>T synonymous_variant 0.29
clpC1 4038812 c.1893T>C synonymous_variant 0.31
clpC1 4038838 c.1867C>T synonymous_variant 0.2
clpC1 4038839 c.1866G>C synonymous_variant 0.2
clpC1 4038878 c.1827A>G synonymous_variant 0.19
clpC1 4038902 c.1803C>T synonymous_variant 0.19
clpC1 4038908 c.1797C>G synonymous_variant 0.23
clpC1 4038914 c.1791G>C synonymous_variant 0.25
clpC1 4038923 c.1782A>G synonymous_variant 0.22
clpC1 4038953 c.1752A>G synonymous_variant 0.26
clpC1 4038956 c.1749T>C synonymous_variant 0.26
clpC1 4038965 c.1740T>C synonymous_variant 0.29
clpC1 4038971 c.1734T>C synonymous_variant 0.23
clpC1 4038974 c.1731T>C synonymous_variant 0.23
clpC1 4038980 c.1725C>T synonymous_variant 0.29
clpC1 4038989 c.1716T>C synonymous_variant 0.26
clpC1 4038995 c.1710G>A synonymous_variant 0.15
clpC1 4039022 c.1683A>G synonymous_variant 0.22
clpC1 4039037 c.1668T>C synonymous_variant 0.33
clpC1 4039085 c.1620A>G synonymous_variant 0.35
clpC1 4039090 c.1615C>T synonymous_variant 0.35
clpC1 4039097 c.1608G>C synonymous_variant 0.38
clpC1 4039103 c.1602T>C synonymous_variant 0.39
clpC1 4039106 c.1599G>C synonymous_variant 0.38
clpC1 4039112 c.1593C>G synonymous_variant 0.41
clpC1 4039121 c.1584T>C synonymous_variant 0.36
clpC1 4039133 c.1572C>G synonymous_variant 0.3
clpC1 4039142 c.1563A>G synonymous_variant 0.29
clpC1 4039145 c.1560G>C synonymous_variant 0.28
clpC1 4039169 p.Glu512Asp missense_variant 0.27
clpC1 4039172 c.1533A>G synonymous_variant 0.28
clpC1 4039183 c.1522T>C synonymous_variant 0.3
clpC1 4039187 c.1518G>C synonymous_variant 0.27
clpC1 4039226 c.1479T>C synonymous_variant 0.25
clpC1 4039274 c.1431G>C synonymous_variant 0.18
clpC1 4039286 c.1419T>C synonymous_variant 0.18
clpC1 4039292 c.1413C>T synonymous_variant 0.15
clpC1 4039295 c.1410A>G synonymous_variant 0.16
clpC1 4039319 c.1386T>C synonymous_variant 0.16
clpC1 4039322 c.1383T>C synonymous_variant 0.17
clpC1 4039337 c.1368A>C synonymous_variant 0.23
clpC1 4039352 c.1353C>T synonymous_variant 0.22
clpC1 4039391 c.1314T>G synonymous_variant 0.21
clpC1 4039409 c.1296T>C synonymous_variant 0.23
clpC1 4039412 c.1293T>G synonymous_variant 0.23
clpC1 4039430 c.1275T>C synonymous_variant 0.25
clpC1 4039442 c.1261_1263delCTAinsTTG synonymous_variant 0.16
clpC1 4039448 c.1257A>G synonymous_variant 0.16
clpC1 4039454 c.1251A>G synonymous_variant 0.18
clpC1 4039463 c.1242C>G synonymous_variant 0.18
clpC1 4039466 c.1239T>C synonymous_variant 0.22
clpC1 4039469 c.1236T>C synonymous_variant 0.23
clpC1 4039481 c.1224T>C synonymous_variant 0.19
clpC1 4039484 c.1221T>G synonymous_variant 0.19
clpC1 4039493 c.1212C>T synonymous_variant 0.19
clpC1 4039514 c.1191C>T synonymous_variant 0.19
clpC1 4039517 c.1188C>G synonymous_variant 0.15
clpC1 4039661 c.1044T>C synonymous_variant 0.15
clpC1 4039664 c.1041G>C synonymous_variant 0.17
clpC1 4039694 c.1011G>C synonymous_variant 0.15
clpC1 4039820 c.885T>C synonymous_variant 0.15
clpC1 4039826 c.879C>G synonymous_variant 0.18
clpC1 4039831 c.874T>C synonymous_variant 0.2
clpC1 4039850 c.855T>C synonymous_variant 0.2
clpC1 4039865 c.840T>C synonymous_variant 0.19
clpC1 4039868 c.837C>T synonymous_variant 0.2
clpC1 4040021 c.684A>C synonymous_variant 0.15
clpC1 4040522 c.183T>C synonymous_variant 0.14
clpC1 4040528 c.177G>C synonymous_variant 0.17
clpC1 4040531 c.174T>G synonymous_variant 0.16
embC 4240484 p.Ala208Thr missense_variant 0.15
embC 4240489 c.627A>G synonymous_variant 0.15
embC 4240495 c.633T>C synonymous_variant 0.14
embC 4240512 p.Ser217Thr missense_variant 0.15
embC 4240516 c.654G>C synonymous_variant 0.14
embC 4240519 c.657T>C synonymous_variant 0.14
embC 4240726 c.864G>C synonymous_variant 0.14
embC 4240741 c.879C>T synonymous_variant 0.19
embC 4240777 c.915G>A synonymous_variant 0.22
embC 4240780 c.918T>C synonymous_variant 0.2
embC 4240783 c.921G>C synonymous_variant 0.19
embC 4241039 p.Asp393Asn missense_variant 0.16
embC 4241050 c.1188T>G synonymous_variant 0.16
embC 4241056 c.1194C>G synonymous_variant 0.19
embC 4241095 c.1233C>T synonymous_variant 0.28
embC 4241107 c.1245G>C synonymous_variant 0.28
embC 4241140 c.1278A>G synonymous_variant 0.19
embC 4241153 p.Ile431Leu missense_variant 0.25
embC 4241161 c.1299C>G synonymous_variant 0.22
embC 4241162 c.1300T>C synonymous_variant 0.22
embC 4241167 c.1305C>G synonymous_variant 0.23
embC 4241185 c.1323G>C synonymous_variant 0.22
embC 4241197 c.1335G>C synonymous_variant 0.16
embC 4241230 c.1368A>G synonymous_variant 0.15
embA 4242643 c.-590C>T upstream_gene_variant 1.0
embA 4242823 c.-410G>C upstream_gene_variant 0.17
embA 4244159 c.927G>T synonymous_variant 0.12
embA 4244669 c.1437G>C synonymous_variant 0.15
embA 4244675 c.1443A>G synonymous_variant 0.15
embA 4244681 c.1449A>G synonymous_variant 0.15
embA 4244684 c.1452C>G synonymous_variant 0.16
embA 4244702 c.1470C>G synonymous_variant 0.17
embA 4244705 c.1473G>C synonymous_variant 0.16
embA 4244708 c.1476C>G synonymous_variant 0.15
embA 4244714 c.1482C>G synonymous_variant 0.15
embA 4245182 c.1950T>C synonymous_variant 0.17
embA 4245186 p.Thr652Ala missense_variant 0.17
embB 4245623 c.-891G>A upstream_gene_variant 0.14
embB 4245662 c.-852G>C upstream_gene_variant 0.21
embB 4245674 c.-840A>T upstream_gene_variant 0.22
embB 4245677 c.-837G>C upstream_gene_variant 0.22
embB 4245683 c.-831C>T upstream_gene_variant 0.22
embA 4245693 p.Ile821Val missense_variant 0.27
embB 4245714 c.-800C>T upstream_gene_variant 0.28
embB 4245725 c.-789A>G upstream_gene_variant 0.28
embB 4245726 c.-788T>C upstream_gene_variant 0.28
embB 4245734 c.-780G>C upstream_gene_variant 0.21
embB 4245737 c.-777A>T upstream_gene_variant 0.2
embB 4245764 c.-750G>C upstream_gene_variant 0.24
embA 4245772 p.Asn847Thr missense_variant 0.2
embB 4246028 c.-486G>C upstream_gene_variant 0.13
embB 4246070 c.-444G>C upstream_gene_variant 0.17
embB 4246109 c.-405C>G upstream_gene_variant 0.15
embB 4246115 c.-399T>C upstream_gene_variant 0.14
embB 4246172 c.-342C>T upstream_gene_variant 0.25
embB 4246184 c.-330A>C upstream_gene_variant 0.21
embB 4246205 c.-309A>G upstream_gene_variant 0.22
embB 4246211 c.-303T>C upstream_gene_variant 0.22
embB 4246217 c.-297G>A upstream_gene_variant 0.24
embB 4246220 c.-294T>C upstream_gene_variant 0.25
embB 4246223 c.-291C>T upstream_gene_variant 0.24
embA 4246227 p.Ile999Val missense_variant 0.23
embB 4246235 c.-279G>A upstream_gene_variant 0.23
embB 4246244 c.-270G>A upstream_gene_variant 0.2
embA 4246254 p.Leu1008Met missense_variant 0.15
embA 4246359 p.Ala1043Ser missense_variant 0.14
embB 4247137 c.624C>G synonymous_variant 0.21
embB 4247140 c.627G>C synonymous_variant 0.19
embB 4247150 p.Arg213Thr missense_variant 0.18
embB 4247155 c.642G>A synonymous_variant 0.18
embB 4247355 p.Ala281Gly missense_variant 0.14
embB 4247365 c.852A>C synonymous_variant 0.15
embB 4247370 p.Gly286Ala missense_variant 0.14
embB 4247386 c.873T>C synonymous_variant 0.16
embB 4247398 c.885G>C synonymous_variant 0.17
embB 4247401 c.888T>C synonymous_variant 0.17
embB 4247404 c.891G>C synonymous_variant 0.17
embB 4247407 c.894G>C synonymous_variant 0.18
embB 4247440 c.927C>G synonymous_variant 0.21
embB 4247470 c.957T>C synonymous_variant 0.23
embB 4247497 c.984T>C synonymous_variant 0.26
embB 4247500 c.987C>G synonymous_variant 0.28
embB 4247512 c.999T>C synonymous_variant 0.27
embB 4247554 c.1041T>C synonymous_variant 0.18
embB 4247555 p.Leu348Ile missense_variant 0.18
embB 4247566 c.1053C>G synonymous_variant 0.16
embB 4247579 p.Ala356Phe missense_variant 0.17
embB 4247657 p.Pro382Ala missense_variant 0.16
embB 4247684 c.1171T>C synonymous_variant 0.15
embB 4247785 c.1272G>C synonymous_variant 0.17
embB 4247800 c.1287A>C synonymous_variant 0.18
embB 4247899 p.Met462Ile missense_variant 0.14
embB 4247915 p.Arg468Ser missense_variant 0.14
embB 4247932 c.1419C>G synonymous_variant 0.17
embB 4247948 p.Val479Leu missense_variant 0.18
embB 4247975 p.Val488Ile missense_variant 0.17
embB 4247989 c.1476G>C synonymous_variant 0.17
embB 4248042 p.Ala510Gly missense_variant 0.23
embB 4248052 c.1539G>T synonymous_variant 0.22
embB 4248055 c.1542G>C synonymous_variant 0.23
embB 4248058 c.1545C>T synonymous_variant 0.19
embB 4248061 c.1548G>A synonymous_variant 0.17
embB 4248064 c.1551G>C synonymous_variant 0.15
embB 4248070 c.1557T>C synonymous_variant 0.17
embB 4248094 c.1581C>T synonymous_variant 0.17
embB 4248316 c.1803C>G synonymous_variant 0.2
embB 4248319 c.1806A>G synonymous_variant 0.19
embB 4248334 c.1821C>G synonymous_variant 0.19
embB 4248349 c.1836G>A synonymous_variant 0.19
embB 4248358 c.1845C>G synonymous_variant 0.14
embB 4248379 c.1866G>A synonymous_variant 0.15
embB 4248424 c.1911G>A synonymous_variant 0.17
embB 4248430 c.1917T>C synonymous_variant 0.16
embB 4248448 c.1935C>T synonymous_variant 0.2
embB 4248457 c.1944T>C synonymous_variant 0.2
embB 4248472 c.1959T>C synonymous_variant 0.19
embB 4248496 c.1983G>C synonymous_variant 0.17
embB 4248504 p.Asp664Ala missense_variant 0.15
embB 4249417 c.2904A>G synonymous_variant 0.15
embB 4249429 c.2916C>G synonymous_variant 0.16
embB 4249432 c.2919A>G synonymous_variant 0.16
embB 4249444 c.2931T>C synonymous_variant 0.16
embB 4249447 c.2934G>C synonymous_variant 0.15
embB 4249453 c.2940G>C synonymous_variant 0.16
embB 4249568 p.Ser1019Asn missense_variant 0.19
embB 4249573 c.3060T>C synonymous_variant 0.18
embB 4249594 c.3081G>C synonymous_variant 0.19
embB 4249609 c.3096T>C synonymous_variant 0.14
embB 4249618 c.3105C>G synonymous_variant 0.14
embB 4249624 c.3111C>T synonymous_variant 0.14
embB 4249640 c.3127T>C synonymous_variant 0.17
embB 4249648 c.3135G>C synonymous_variant 0.17
embB 4249675 c.3162C>G synonymous_variant 0.17
embB 4249693 c.3180T>C synonymous_variant 0.18
embB 4249699 c.3186T>A synonymous_variant 0.2
embB 4249702 c.3189C>A synonymous_variant 0.2
embB 4249703 c.3190C>T synonymous_variant 0.2
embB 4249711 c.3198G>A synonymous_variant 0.18
aftB 4267592 c.1245C>G synonymous_variant 0.21
aftB 4267622 p.Ser405Thr missense_variant 0.22
aftB 4267634 p.Arg401His missense_variant 0.21
aftB 4267637 c.1200C>G synonymous_variant 0.21
aftB 4267649 c.1188T>C synonymous_variant 0.24
aftB 4267667 c.1170A>G synonymous_variant 0.21
aftB 4267670 c.1167G>A synonymous_variant 0.17
aftB 4267891 p.Val316Ile missense_variant 0.25
aftB 4267892 p.Ile315Met missense_variant 0.25
aftB 4267898 c.939T>C synonymous_variant 0.18
aftB 4267907 c.930C>G synonymous_variant 0.18
aftB 4267912 p.Pro309Ala missense_variant 0.18
aftB 4267916 c.921T>C synonymous_variant 0.15
aftB 4268994 c.-158T>C upstream_gene_variant 0.16
aftB 4269000 c.-164G>A upstream_gene_variant 0.14
aftB 4269006 c.-170T>C upstream_gene_variant 0.14
aftB 4269045 c.-209G>C upstream_gene_variant 0.14
aftB 4269150 c.-314G>C upstream_gene_variant 0.22
aftB 4269162 c.-328_-326delTTGinsCTC upstream_gene_variant 0.24
aftB 4269177 c.-341G>A upstream_gene_variant 0.29
aftB 4269180 c.-344G>T upstream_gene_variant 0.38
aftB 4269195 c.-359C>T upstream_gene_variant 0.42
aftB 4269216 c.-380C>T upstream_gene_variant 0.39
aftB 4269222 c.-386T>G upstream_gene_variant 0.38
aftB 4269225 c.-389C>T upstream_gene_variant 0.35
aftB 4269231 c.-395C>T upstream_gene_variant 0.37
aftB 4269234 c.-398A>G upstream_gene_variant 0.39
ubiA 4269243 p.His197Gln missense_variant 0.45
aftB 4269248 c.-412C>T upstream_gene_variant 0.38
aftB 4269261 c.-425G>A upstream_gene_variant 0.33
aftB 4269285 c.-449T>G upstream_gene_variant 0.19
ethA 4326510 p.Ala322Pro missense_variant 0.17
ethA 4326520 p.Glu318Asp missense_variant 0.2
ethA 4326523 c.951T>C synonymous_variant 0.19
ethA 4326535 c.939G>C synonymous_variant 0.22
ethR 4326556 c.-993A>G upstream_gene_variant 0.17
ethA 4326563 p.Ala304Gly missense_variant 0.15
ethR 4326565 c.-984C>A upstream_gene_variant 0.15
ethA 4327065 p.Cys137Arg missense_variant 0.97
ethR 4327306 c.-243G>A upstream_gene_variant 0.17
ethR 4327318 c.-231T>G upstream_gene_variant 0.21
ethR 4327327 c.-222A>G upstream_gene_variant 0.21
ethR 4327330 c.-219G>A upstream_gene_variant 0.21
ethR 4327335 c.-214A>G upstream_gene_variant 0.21
ethR 4327336 c.-213A>G upstream_gene_variant 0.21
ethA 4327356 p.Ser40Ala missense_variant 0.2
ethA 4327357 p.Glu39Ser missense_variant 0.21
ethR 4327390 c.-159C>G upstream_gene_variant 0.27
ethR 4327396 c.-153A>G upstream_gene_variant 0.22
whiB6 4338595 c.-75delG upstream_gene_variant 1.0
gid 4408213 c.-11C>T upstream_gene_variant 1.0