Rv0006 - c.1764C>G
Drug resistance types
11 Sensitive
3 RR-TB
36 HR-TB
11 MDR-TB
0 Pre-XDR-TB
2 XDR-TB
58 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage4.9 | 28 |
| lineage2.1;lineage4.9 | 4 |
| La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.8.1;lineage4.9;lineage7 | 1 |
| lineage2.1;lineage4.9;lineage6.3 | 5 |
| lineage4.1.2.1 | 2 |
| M.canetti;lineage2.2.2;lineage6.2 | 2 |
| La1.6;La3;M.canetti;lineage4.2;lineage4.9 | 1 |
| La2;lineage4.9 | 1 |
| La3;lineage4.3.4 | 1 |
| lineage2.1;lineage6.3 | 2 |
| lineage4.4.1.2 | 1 |
| La3;M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.8.2;lineage4.9;lineage7 | 1 |
| lineage2.2.1.1 | 2 |
| lineage2.2.1 | 4 |
| La1.7;lineage4.9 | 5 |
| 9 | |
| La3;lineage4.9 | 1 |
| La1.7;lineage4.9;lineage6 | 1 |
| La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9 | 3 |
| lineage4.3.4 | 1 |
| La1.7;lineage4.9;lineage7 | 2 |
| La1.6;La3;M.canetti;lineage4.2.2 | 1 |
| La1.7.1 | 1 |
| lineage4.6.1.1 | 2 |
| La1.7.1;lineage4.9 | 1 |
| lineage4.1.3 | 2 |
| lineage4.6.2.2 | 2 |
| lineage1.1.3.1 | 1 |
| La1.7.1;La1.7.X-unk4;lineage7 | 1 |
| M.canetti;lineage4.2 | 1 |
| La1.2.BCG | 1 |
| lineage4.6.3;lineage4.9 | 1 |
| La3;M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.9 | 1 |
| M.canetti;lineage2.2 | 2 |
| lineage4.9;lineage7 | 1 |
| lineage4.9;lineage6.3 | 2 |
| lineage4.8 | 1 |
| lineage2.2 | 1 |
| M.canetti;lineage4.9;lineage9 | 1 |
| lineage6.3.1 | 1 |
| La1.7.X-unk4;lineage4.9 | 1 |
| La2;lineage2.2 | 1 |
| La1.6;La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.8.2;lineage4.9 | 1 |
| lineage4.6.3;lineage4.9;lineage6.3 | 1 |
| M.canetti;lineage4.9 | 1 |
| lineage1;lineage4.9 | 1 |
| La1.2;La1.8.1 | 1 |
| La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 | 1 |
| La3;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 | 1 |
| La1.7.1;La1.7.X-unk4 | 1 |
| M.canetti;lineage1 | 1 |
| lineage2.1;lineage4.3.2;lineage4.9 | 1 |
| lineage4.9;lineage9 | 1 |
| M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.9 | 1 |
| La1.6;La3;M.canetti;lineage3;lineage4.2;lineage4.3.4;lineage4.9;lineage6.3 | 1 |
| lineage3 | 2 |
| La3;M.canetti;lineage2;lineage4.2;lineage4.3 | 1 |
| La1.7;lineage4.2 | 1 |
| lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 121 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR3675457 | Other | lineage4.9 | None | SRR6045380 | Other | lineage2.1;lineage4.9 | None | ERR133986 | Other | La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.8.1;lineage4.9;lineage7 | None | SRR23961558 | Other | lineage2.1;lineage4.9;lineage6.3 | None | ERR9786694 | Other | lineage4.1.2.1 | None | ERR736871 | HR-TB | lineage2.1;lineage4.9;lineage6.3 | None | ERR4831546 | HR-TB | M.canetti;lineage2.2.2;lineage6.2 | None | ERR5311079 | Other | La1.6;La3;M.canetti;lineage4.2;lineage4.9 | None | ERR1063857 | MDR-TB | La2;lineage4.9 | None | ERR161039 | HR-TB | La3;lineage4.3.4 | None | SRR3675248 | Other | lineage4.9 | None | ERR5336148 | Other | lineage2.1;lineage6.3 | None | ERR323056 | HR-TB | lineage4.4.1.2 | None | SRR12416840 | MDR-TB | lineage4.9 | None | ERR1034634 | HR-TB | lineage4.9 | None | ERR212125 | HR-TB | lineage4.9 | None | SRR5341418 | Other | La3;M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.8.2;lineage4.9;lineage7 | None | SRR3675490 | Other | lineage2.1;lineage4.9;lineage6.3 | None | SRR1180147 | Other | lineage2.2.1.1 | None | SRR1183144 | Other | lineage2.2.1 | None | SRR7496472 | Other | lineage4.9 | None | ERR3283018 | HR-TB | lineage4.9 | None | ERR176560 | HR-TB | La1.7;lineage4.9 | None | ERR9786843 | Other | None | SRR10808730 | Other | lineage4.9 | None | ERR176778 | HR-TB | lineage4.9 | None | ERR212034 | HR-TB | La1.7;lineage4.9 | None | SRR1180137 | Other | lineage2.2.1 | None | ERR181744 | HR-TB | La3;lineage4.9 | None | ERR6866547 | Other | La1.7;lineage4.9;lineage6 | None | ERR067681 | MDR-TB | La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9 | None | ERR736817 | HR-TB | lineage4.3.4 | None | SRR5341313 | Sensitive | La1.7;lineage4.9;lineage7 | None | SRR11662696 | MDR-TB | La1.6;La3;M.canetti;lineage4.2.2 | None | ERR3797069 | Other | lineage4.9 | None | ERR9786682 | Other | lineage4.1.2.1 | None | SRR1792478 | HR-TB | La1.7.1 | None | SRR7496517 | Other | None | ERR323108 | HR-TB | La1.7;lineage4.9 | None | SRR3675529 | Other | lineage2.1;lineage4.9;lineage6.3 | None | ERR987765 | Sensitive | lineage4.6.1.1 | None | ERR736856 | Sensitive | lineage4.9 | None | ERR181887 | Other | lineage4.9 | None | ERR216938 | HR-TB | La1.7;lineage4.9 | None | ERR161037 | Other | lineage4.9 | None | SRR6044876 | Sensitive | lineage4.9 | None | ERR3797043 | Sensitive | lineage4.9 | None | SRR3675236 | Other | None | ERR1023525 | HR-TB | La1.7;lineage4.9 | None | ERR1063859 | HR-TB | La1.7.1;lineage4.9 | None | ERR3804169 | HR-TB | lineage4.1.3 | None | ERR9786711 | Sensitive | lineage4.6.2.2 | None | ERR1063849 | HR-TB | lineage4.9 | None | ERR8479578 | Sensitive | lineage1.1.3.1 | None | ERR9117709 | Other | None | SRR6046824 | MDR-TB | La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9 | None | ERR3445501 | HR-TB | La1.7.1;La1.7.X-unk4;lineage7 | None | ERR473332 | Other | lineage4.9 | None | SRR5341422 | HR-TB | La1.7;lineage4.9;lineage7 | None | ERR403298 | MDR-TB | M.canetti;lineage4.2 | None | SRR1183106 | RR-TB | lineage2.2.1.1 | None | ERR4798262 | HR-TB | La1.2.BCG | None | ERR3797070 | Other | lineage4.9 | None | ERR11252558 | Other | lineage4.6.3;lineage4.9 | None | SRR3675221 | Other | lineage4.9 | None | ERR2514692 | Other | None | ERR9787197 | Other | None | ERR234659 | Other | None | SRR8552928 | HR-TB | lineage2.1;lineage4.9;lineage6.3 | None | ERR181824 | HR-TB | lineage4.9 | None | ERR502889 | Other | La3;M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.9 | None | ERR3801503 | Sensitive | lineage4.6.2.2 | None | ERR7911670 | XDR-TB | M.canetti;lineage2.2 | None | SRR6832787 | Sensitive | lineage2.2.1 | None | SRR29231479 | RR-TB | lineage4.9 | None | ERR3445502 | Sensitive | lineage4.9;lineage7 | None | SRR1181289 | Other | lineage2.2.1 | None | ERR4831545 | XDR-TB | M.canetti;lineage2.2 | None | SRR3675465 | Other | lineage4.9;lineage6.3 | None | ERR1063858 | HR-TB | lineage4.9 | None | ERR3283042 | Other | lineage4.9 | None | ERR176651 | Other | lineage4.9 | None | ERR9786569 | Other | lineage4.8 | None | ERR1199132 | Sensitive | lineage4.6.1.1 | None | ERR4810624 | MDR-TB | lineage2.2 | None | SRR18213713 | HR-TB | None | ERR3283019 | Other | lineage2.1;lineage4.9 | None | ERR1063856 | HR-TB | M.canetti;lineage4.9;lineage9 | None | ERR9787139 | Other | lineage6.3.1 | None | SRR3675520 | Other | La1.7.X-unk4;lineage4.9 | None | ERR1063839 | MDR-TB | La2;lineage2.2 | None | SRR19303884 | Other | lineage2.1;lineage6.3 | None | ERR5311103 | RR-TB | La1.6;La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.8.2;lineage4.9 | None | SRR3675574 | Other | lineage4.6.3;lineage4.9;lineage6.3 | None | ERR1035138 | MDR-TB | lineage2.1;lineage4.9 | None | SRR6045526 | Other | lineage4.9 | None | ERR736839 | HR-TB | M.canetti;lineage4.9 | None | ERR323045 | HR-TB | lineage1;lineage4.9 | None | SRR7240033 | Other | La1.2;La1.8.1 | None | SRR6046482 | Other | La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 | None | ERR5311091 | Other | La3;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 | None | ERR3445503 | Other | La1.7.1;La1.7.X-unk4 | None | ERR1873492 | HR-TB | M.canetti;lineage2.2.2;lineage6.2 | None | SRR15014655 | Other | M.canetti;lineage1 | None | SRR6045327 | Other | lineage2.1;lineage4.3.2;lineage4.9 | None | SRR6046720 | HR-TB | lineage4.9;lineage9 | None | ERR1035162 | Other | M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.9 | None | ERR1063862 | HR-TB | lineage4.9 | None | ERR4798406 | MDR-TB | La1.6;La3;M.canetti;lineage3;lineage4.2;lineage4.3.4;lineage4.9;lineage6.3 | None | SRR3675524 | Other | lineage4.9;lineage6.3 | None | ERR176779 | HR-TB | lineage4.9 | None | ERR990545 | Other | lineage3 | None | ERR4800341 | Other | lineage3 | None | ERR158583 | MDR-TB | La3;M.canetti;lineage2;lineage4.2;lineage4.3 | None | ERR9786611 | HR-TB | lineage4.1.3 | None | SRR3675581 | Other | lineage2.1;lineage4.9 | None | SRR7496509 | Other | None | SRR23961559 | Other | La1.7;lineage4.2 | None | SRR12416824 | HR-TB | lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 | None | SRR3675390 | Other | La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9 | None | ERR736875 | HR-TB | lineage4.9 | None |
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