lineage | Count |
---|---|
lineage4.9 | 37 |
lineage4;lineage1.1.2 | 1 |
93 | |
lineage2.2.1 | 11 |
lineage4.1.1 | 1 |
lineage4 | 17 |
lineage4.1.2.1 | 15 |
lineage3 | 6 |
lineage1.1 | 1 |
lineage4.3.3 | 3 |
lineage4.6.2.2 | 5 |
lineage4.2.1.1 | 1 |
lineage4.1.1.3 | 2 |
lineage3.1 | 2 |
lineage6.3.1 | 1 |
La2 | 1 |
lineage4.3.4.2.1 | 2 |
lineage4.1.2.1;lineage2.2.1 | 1 |
La1.8.1 | 2 |
lineage6.1.1 | 2 |
lineage1.1.2 | 2 |
La1 | 1 |
lineage3.1.2 | 1 |
lineage4.3.4.1 | 1 |
lineage4.6.1.1 | 1 |
lineage4.3.2 | 1 |
lineage4.9.1 | 1 |
lineage4.3.4 | 2 |
lineage4.1.2.1.1 | 1 |
lineage4.8 | 2 |
lineage4.8;lineage4.1 | 2 |
lineage3.1.2.2;lineage3.1.2.1 | 1 |
lineage2.2.2 | 1 |
lineage2 | 2 |
La3 | 1 |
lineage4.4.1.1 | 2 |
lineage2.2 | 2 |
lineage4.4.1.1.1 | 1 |
lineage4.5 | 1 |
lineage1.2.1.2 | 1 |
lineage2.2.1.1 | 1 |
lineage1.1.1 | 1 |
lineage1.2.1.2.1 | 1 |
La1.7.1 | 1 |
lineage9;lineage3.1 | 1 |
lineage4.9;lineage4.6.3 | 1 |
lineage4.2;La1.7 | 1 |
lineage4.9;La1 | 1 |
lineage4;lineage3;lineage2.2.1 | 1 |
lineage4.1 | 1 |
lineage3;lineage2.1 | 1 |
lineage4.3 | 1 |
lineage2.1 | 1 |
spoligotype | Count |
---|---|
None | 244 |
ID | Drug resistance | Lineage | Country iso2 | ERR4818607 | Sensitive | lineage4.9 | None | ERR4817692 | HR-TB | lineage4;lineage1.1.2 | None | ERR1035162 | Other | None | ERR3275196 | Other | lineage2.2.1 | nl | ERR2229143 | Other | lineage4.1.1 | None | SRR5341373 | HR-TB | lineage4 | None | SRR5341400 | HR-TB | lineage4 | None | SRR5341293 | HR-TB | lineage4 | None | ERR4819357 | Other | lineage4.9 | None | SRR5341418 | Other | None | SRR5341432 | HR-TB | lineage4 | None | SAMN02414850 | Other | lineage4.1.2.1 | None | ERR2446563 | Other | lineage2.2.1 | nl | ERR4819933 | Other | lineage4.9 | None | SRR5341313 | HR-TB | None | SRR5341315 | Sensitive | None | ERR2693239 | HR-TB | None | ERR4821053 | Other | lineage3 | None | SRR5341470 | HR-TB | None | ERR2693227 | Other | lineage4.9 | None | ERR2660539 | Other | lineage4.9 | None | ERR278594 | HR-TB | None | SRR6046133 | HR-TB | None | SRR6045555 | HR-TB | None | SRR6045233 | HR-TB | None | SRR6045952 | HR-TB | None | SRR6325442 | HR-TB | None | SRR6325444 | HR-TB | None | SRR6325448 | HR-TB | None | SRR6046482 | HR-TB | None | SRR6046514 | HR-TB | None | SRR6046824 | HR-TB | None | SRR6046594 | HR-TB | lineage4 | None | SRR6046644 | HR-TB | None | SRR6325447 | HR-TB | None | SRR6458421 | MDR-TB | lineage2.2.1 | None | ERR323037 | HR-TB | lineage4 | None | SRR6397654 | HR-TB | lineage4.1.2.1 | None | ERR3077978 | Other | lineage1.1 | None | ERR294248 | HR-TB | None | SRR6831950 | Other | lineage4.3.3 | None | ERR485006 | HR-TB | lineage4.9 | None | ERR4872119 | MDR-TB | lineage4.6.2.2 | None | SRR6832178 | HR-TB | lineage4.2.1.1 | None | ERR294266 | HR-TB | None | ERR11465665 | Other | lineage4.1.1.3 | None | ERR323034 | HR-TB | lineage3.1 | None | SRR7535086 | Other | None | ERR323036 | HR-TB | None | ERR5311081 | HR-TB | None | ERR5311090 | HR-TB | None | ERR323038 | HR-TB | None | SRR8217918 | HR-TB | None | SRR998601 | Sensitive | lineage6.3.1 | None | ERR502524 | HR-TB | La2 | None | ERR502889 | Other | None | ERR5311099 | HR-TB | None | ERR323053 | HR-TB | None | ERR323044 | HR-TB | lineage4.3.4.2.1 | None | ERR323039 | HR-TB | None | ERR323041 | HR-TB | None | ERR323045 | HR-TB | None | ERR323055 | HR-TB | None | ERR323054 | HR-TB | lineage3.1 | None | ERR323063 | HR-TB | None | ERR11488822 | Pre-XDR-TB | lineage4.1.2.1;lineage2.2.1 | None | ERR067681 | HR-TB | None | ERR1063859 | HR-TB | None | ERR1034652 | Other | None | ERR1023295 | HR-TB | lineage4.1.2.1 | None | ERR3283028 | Other | None | ERR133986 | HR-TB | None | ERR3283014 | HR-TB | None | ERR3283017 | HR-TB | None | ERR3283048 | HR-TB | lineage4.9 | None | ERR3283040 | HR-TB | None | ERR3283031 | HR-TB | None | ERR3283058 | Other | lineage4.9 | None | ERR3283047 | HR-TB | None | ERR3797048 | HR-TB | None | ERR4821179 | Other | lineage4.1.2.1 | gb | ERR3797023 | HR-TB | La1.8.1 | None | ERR3797043 | HR-TB | None | ERR3797036 | HR-TB | None | ERR3283057 | HR-TB | lineage4 | None | ERR3439432 | Other | None | ERR3445503 | HR-TB | None | ERR3468544 | HR-TB | None | ERR3797016 | HR-TB | None | ERR3797063 | HR-TB | None | ERR3797065 | MDR-TB | lineage4 | None | ERR3797083 | HR-TB | None | ERR3797079 | Sensitive | lineage4 | None | ERR3797064 | Sensitive | None | ERR3797082 | Other | lineage4.9 | None | ERR3797087 | Sensitive | lineage4 | None | ERR3801503 | Sensitive | lineage4.6.2.2 | None | ERR3799304 | Other | lineage6.1.1 | None | ERR4188350 | HR-TB | None | ERR403298 | HR-TB | lineage4 | None | ERR4769417 | Pre-XDR-TB | lineage4.9 | None | ERR473332 | Other | lineage4 | None | ERR473334 | HR-TB | lineage4.9 | None | ERR4797588 | MDR-TB | lineage3 | None | ERR4798139 | Sensitive | lineage1.1.2 | None | ERR4798406 | HR-TB | None | ERR4798262 | HR-TB | La1 | None | ERR4798504 | Other | lineage3 | None | ERR4798648 | HR-TB | lineage3.1.2 | None | ERR4800527 | MDR-TB | lineage2.2.1 | None | ERR6326069 | Pre-XDR-TB | lineage4.3.4.1 | None | ERR5908228 | Other | lineage4.3.3 | None | ERR5917710 | Other | lineage4.1.2.1 | None | ERR6358837 | HR-TB | None | ERR6358755 | Other | lineage4.6.1.1 | None | ERR6359066 | HR-TB | lineage4 | None | ERR6359069 | Other | lineage4.9 | None | ERR772255 | MDR-TB | lineage4.3.2 | None | ERR245758 | Other | lineage4.9.1 | None | ERR736817 | HR-TB | lineage4.3.4 | None | ERR736839 | Other | None | ERR736875 | HR-TB | lineage4 | None | ERR760733 | MDR-TB | lineage4.1.2.1.1 | None | ERR6866125 | Sensitive | lineage4.1.2.1 | None | ERR736831 | HR-TB | lineage4.9 | None | ERR736865 | HR-TB | None | SRR21732954 | Sensitive | lineage4.9 | None | ERR8976043 | HR-TB | None | ERR9119096 | Other | lineage4.3.3 | None | ERR9119525 | MDR-TB | lineage4.6.2.2 | None | ERR9786444 | Sensitive | lineage4.8 | None | ERR9786525 | Other | lineage4.8;lineage4.1 | None | ERR9786711 | Sensitive | lineage4.6.2.2 | None | ERR9786526 | Other | lineage4.8;lineage4.1 | None | ERR9786656 | Sensitive | lineage4.1.2.1 | None | ERR9786843 | Other | None | ERR9786986 | HR-TB | lineage4.1.2.1 | None | ERR987729 | HR-TB | lineage3.1.2.2;lineage3.1.2.1 | None | ERR987722 | HR-TB | None | ERR9787014 | Other | lineage6.1.1 | None | SRR069981 | HR-TB | lineage2.2.2 | None | ERR990545 | Other | lineage3 | None | SRR1162864 | HR-TB | lineage4.1.2.1 | None | SRR069989 | HR-TB | lineage2 | None | SRR1140724 | HR-TB | lineage2.2.1 | None | SRR1162740 | Other | lineage4.1.2.1 | None | SRR1167384 | Other | lineage4 | None | SRR1163221 | HR-TB | lineage4.1.2.1 | None | SRR1165423 | Other | lineage4.1.2.1 | None | SRR1165506 | Other | lineage4.1.2.1 | None | SRR1165584 | Other | lineage4.1.2.1 | None | SRR1167055 | Other | lineage4.1.2.1 | None | SRR1169306 | Other | None | SRR1169249 | Other | La3 | None | SRR1173767 | HR-TB | lineage4.4.1.1 | None | SRR1172146 | Sensitive | lineage4.9 | None | SRR1172310 | HR-TB | None | SRR1173453 | Other | lineage4.4.1.1 | None | SRR1174897 | HR-TB | None | SRR1180137 | Other | lineage2.2.1 | None | SRR1180444 | Sensitive | lineage4.9 | None | SRR1180270 | Other | lineage2.2.1 | None | SRR1180375 | Sensitive | lineage4.9 | None | SRR1180312 | Sensitive | lineage4.9 | None | SRR1180420 | Sensitive | lineage4.9 | None | SRR1181237 | Sensitive | lineage2.2 | None | SRR1181020 | Other | lineage2.2.1 | None | SRR1180977 | Sensitive | lineage4.9 | None | SRR1181289 | Other | lineage2.2.1 | None | SRR1183049 | Other | lineage2.2 | None | SRR1181325 | Sensitive | lineage4.9 | None | SRR1181349 | Sensitive | lineage4.4.1.1.1 | None | SRR1181390 | Sensitive | lineage2 | None | SRR13423544 | Other | lineage4.5 | None | SRR12006550 | Other | lineage1.2.1.2 | None | SRR1183106 | Other | lineage2.2.1.1 | None | SRR13861146 | Sensitive | lineage4.9 | None | SRR13837580 | HR-TB | lineage4.9 | None | SRR13861180 | Other | lineage4.9 | None | SRR13861163 | Sensitive | lineage4.9 | None | SRR13861288 | Other | lineage4.9 | None | SRR13861261 | Sensitive | lineage4.9 | None | SRR13861484 | RR-TB | lineage4.9 | None | SRR13861322 | Other | lineage4.9 | None | SRR13861381 | MDR-TB | lineage4.9 | None | SRR13861439 | RR-TB | lineage4.9 | None | SRR14066533 | Sensitive | lineage1.1.1 | None | SRR13861629 | RR-TB | lineage4.9 | None | SRR13861646 | Other | lineage4.9 | None | SRR13861528 | HR-TB | lineage4.9 | None | SRR1640750 | HR-TB | None | SRR1510066 | Other | lineage1.2.1.2.1 | None | SRR17658572 | Sensitive | lineage1.1.2 | None | SRR1791696 | Other | La1.8.1 | None | SRR17832802 | HR-TB | lineage3 | None | SRR17658565 | Other | lineage3 | None | SRR5709967 | MDR-TB | lineage2.2.1 | None | SRR1792478 | HR-TB | La1.7.1 | None | ERR11082350 | MDR-TB | lineage4.6.2.2 | None | SRR25827418 | Pre-XDR-TB | lineage9;lineage3.1 | None | SRR26399239 | Sensitive | lineage4.9 | None | SRR26159047 | Other | lineage4.9;lineage4.6.3 | None | SRR23961559 | Other | lineage4.2;La1.7 | None | SRR26937107 | MDR-TB | lineage2.2.1 | None | SRR23961542 | Other | lineage4.9;La1 | None | ERR176779 | HR-TB | None | SRR25827605 | Pre-XDR-TB | lineage4;lineage3;lineage2.2.1 | None | ERR176778 | HR-TB | None | SRR3675464 | HR-TB | lineage4.1 | None | ERR1035239 | HR-TB | None | SRR6325445 | HR-TB | None | ERR158583 | HR-TB | None | SRR3675482 | HR-TB | None | SRR3675502 | Other | None | ERR161033 | HR-TB | None | ERR161039 | Sensitive | lineage4.3.4 | None | ERR161034 | Other | lineage4.3.4.2.1 | None | ERR4814536 | MDR-TB | lineage3;lineage2.1 | None | SRR3675486 | HR-TB | None | ERR181744 | HR-TB | None | ERR4815471 | Other | lineage4.9 | None | ERR176568 | Other | lineage4.3 | None | ERR176643 | HR-TB | None | SRR3675545 | HR-TB | None | ERR176651 | HR-TB | None | SRR3675383 | HR-TB | None | ERR176751 | HR-TB | None | SRR3675510 | Other | None | ERR181887 | HR-TB | None | ERR176740 | HR-TB | None | ERR4816964 | Other | lineage4.9 | None | ERR4816151 | Other | lineage4.8 | None | ERR212001 | HR-TB | None | ERR212123 | Other | None | SRR5341422 | HR-TB | lineage2.1 | None | SRR3675550 | Other | None | ERR212033 | HR-TB | None | SRR3675558 | HR-TB | None | ERR212121 | HR-TB | None | SRR3675571 | HR-TB | None | ERR4816551 | HR-TB | lineage4.1.1.3 | None | ERR212125 | HR-TB | lineage4 | None | ERR212138 | HR-TB | lineage4 | None | ERR4816466 | HR-TB | None |
---|