lineage | Count |
---|---|
lineage2.2.1 | 23 |
74 | |
lineage4.9 | 21 |
lineage4.1 | 1 |
La1.8.1 | 4 |
lineage4.2;La1.7 | 1 |
lineage4.3.4.2.1 | 5 |
lineage3;lineage2.1 | 1 |
lineage4.3 | 1 |
lineage4 | 6 |
lineage4.2.2.2 | 1 |
lineage4.1.1.3 | 2 |
lineage4.1.1 | 2 |
lineage4.8 | 1 |
lineage4.1.2.1 | 12 |
lineage3 | 4 |
lineage4.4.1.1 | 2 |
lineage4.2.1.1 | 1 |
lineage2.2 | 4 |
lineage1.1 | 1 |
lineage4.6.2.2 | 2 |
lineage4.3.4.1 | 2 |
lineage3.1 | 2 |
lineage4.4.1.2 | 1 |
lineage4;lineage3.1 | 1 |
lineage1.2.2.2 | 1 |
lineage4.3.3 | 2 |
lineage4.3.2 | 1 |
lineage4.1.2.1.1 | 1 |
lineage4.8;lineage4.1 | 2 |
lineage6.1.3 | 1 |
lineage2 | 1 |
lineage2.2.2 | 2 |
La3 | 1 |
lineage2.2.1.1 | 4 |
lineage1.2.1.2 | 1 |
lineage4.5 | 1 |
spoligotype | Count |
---|---|
None | 193 |
ID | Drug resistance | Lineage | Country iso2 | SRR14802148 | HR-TB | lineage2.2.1 | None | SRR14802146 | HR-TB | lineage2.2.1 | None | SRR1640750 | HR-TB | None | SRR3675482 | HR-TB | None | SRR5709967 | MDR-TB | lineage2.2.1 | None | SRR21677886 | Sensitive | lineage4.9 | None | SRR3675464 | HR-TB | lineage4.1 | None | SRR6325445 | HR-TB | None | ERR1035239 | HR-TB | None | SRR1791696 | Other | La1.8.1 | None | SRR26937107 | MDR-TB | lineage2.2.1 | None | SRR23961559 | Other | lineage4.2;La1.7 | None | ERR158583 | HR-TB | None | ERR161033 | HR-TB | None | SAMN02585910 | Other | lineage2.2.1 | None | ERR161034 | Other | lineage4.3.4.2.1 | None | SRR3675486 | HR-TB | None | ERR176643 | HR-TB | None | ERR4814536 | MDR-TB | lineage3;lineage2.1 | None | SRR3675502 | Other | None | ERR176518 | Sensitive | lineage4.3.4.2.1 | None | ERR176568 | Other | lineage4.3 | None | SRR3675312 | HR-TB | lineage4 | None | SRR3675383 | HR-TB | None | ERR4815040 | Other | lineage4.2.2.2 | None | ERR176751 | HR-TB | None | SRR3675545 | HR-TB | None | SRR3675510 | Other | None | SRR3675574 | HR-TB | None | ERR212001 | HR-TB | None | SRR3675550 | Other | None | ERR212033 | HR-TB | None | SRR3675558 | HR-TB | None | ERR4816656 | HR-TB | None | ERR212121 | HR-TB | None | ERR4816551 | HR-TB | lineage4.1.1.3 | None | ERR2509673 | Other | lineage2.2.1 | None | ERR1035162 | Other | None | ERR2229143 | Other | lineage4.1.1 | None | ERR4818929 | HR-TB | None | ERR3275196 | Other | lineage2.2.1 | nl | ERR2514327 | HR-TB | lineage4.8 | None | SRR5341418 | Other | None | ERR2514692 | Other | None | SAMN02414850 | Other | lineage4.1.2.1 | None | ERR4820112 | Sensitive | lineage4.1.1 | None | ERR2514821 | Other | lineage2.2.1 | None | ERR2446563 | Other | lineage2.2.1 | nl | ERR4821053 | Other | lineage3 | None | SRR6045503 | HR-TB | None | ERR2693239 | HR-TB | None | ERR2652960 | Sensitive | lineage4.4.1.1 | None | SRR6045526 | HR-TB | None | SRR6045399 | Other | None | ERR278594 | HR-TB | None | SRR6046133 | HR-TB | None | SRR6044838 | Other | lineage4.9 | None | SRR6045327 | HR-TB | None | ERR2747653 | Other | La1.8.1 | None | SRR6045555 | HR-TB | None | SRR6045952 | HR-TB | None | SRR6045233 | HR-TB | None | SRR6325442 | HR-TB | None | SRR6046225 | HR-TB | None | SRR6046362 | HR-TB | None | SRR6325444 | HR-TB | None | SRR6046460 | HR-TB | None | ERR2517528 | Other | lineage3 | nl | SRR6325448 | HR-TB | None | SRR6046482 | HR-TB | None | SRR6046514 | HR-TB | None | SRR6325447 | HR-TB | None | SRR6046594 | HR-TB | lineage4 | None | SRR6046824 | HR-TB | None | SRR6832178 | HR-TB | lineage4.2.1.1 | None | SRR6397654 | HR-TB | lineage4.1.2.1 | None | ERR4831546 | HR-TB | lineage2.2 | None | SRR6458421 | MDR-TB | lineage2.2.1 | None | ERR3077978 | Other | lineage1.1 | None | ERR4872119 | MDR-TB | lineage4.6.2.2 | None | ERR4831545 | Pre-XDR-TB | lineage2.2 | None | ERR294248 | HR-TB | None | SRR6832249 | Other | lineage2.2.1 | None | ERR11465510 | Sensitive | lineage4.3.4.2.1 | None | SRR6832787 | RR-TB | lineage2.2.1 | None | ERR11465351 | Sensitive | lineage4.1.2.1 | None | ERR11465353 | Sensitive | lineage4.3.4.1 | None | SRR6831719 | Pre-XDR-TB | lineage2.2.1 | None | ERR323036 | HR-TB | None | ERR323034 | HR-TB | lineage3.1 | None | ERR5311090 | HR-TB | None | ERR502889 | Other | None | ERR5311099 | HR-TB | None | ERR5311081 | HR-TB | None | SRR8217918 | HR-TB | None | ERR323044 | HR-TB | lineage4.3.4.2.1 | None | ERR323038 | HR-TB | None | ERR323041 | HR-TB | None | ERR323055 | HR-TB | None | ERR1034652 | Other | None | ERR323054 | HR-TB | lineage3.1 | None | ERR323056 | HR-TB | lineage4.4.1.2 | None | ERR027293 | Other | None | ERR323063 | HR-TB | None | ERR067681 | HR-TB | None | ERR1023295 | HR-TB | lineage4.1.2.1 | None | ERR1063859 | HR-TB | None | ERR11465352 | Sensitive | lineage4.3.4.1 | None | ERR11465511 | Sensitive | lineage4.3.4.2.1 | None | ERR133986 | HR-TB | None | ERR3283048 | HR-TB | lineage4.9 | None | ERR3283017 | HR-TB | None | ERR3797016 | HR-TB | None | ERR3283058 | Other | lineage4.9 | None | ERR3439432 | Other | None | ERR3468544 | HR-TB | None | ERR3797023 | HR-TB | La1.8.1 | None | ERR3797036 | HR-TB | None | ERR3797043 | HR-TB | None | ERR3797060 | Other | La1.8.1 | None | ERR403298 | HR-TB | lineage4 | None | ERR3797083 | HR-TB | None | ERR3797082 | Other | lineage4.9 | None | ERR405209 | Sensitive | lineage4 | None | ERR4769474 | HR-TB | lineage4 | None | ERR405219 | HR-TB | lineage4;lineage3.1 | None | ERR4188350 | HR-TB | None | ERR4797285 | MDR-TB | lineage1.2.2.2 | None | ERR6358837 | HR-TB | None | ERR4798406 | HR-TB | None | ERR5917710 | Other | lineage4.1.2.1 | None | ERR5908228 | Other | lineage4.3.3 | None | ERR772255 | MDR-TB | lineage4.3.2 | None | ERR6358991 | HR-TB | None | ERR760733 | MDR-TB | lineage4.1.2.1.1 | None | ERR7821163 | Other | lineage2.2.1 | None | ERR7911670 | Pre-XDR-TB | lineage2.2 | None | ERR8976043 | HR-TB | None | ERR9119525 | MDR-TB | lineage4.6.2.2 | None | ERR9119096 | Other | lineage4.3.3 | None | ERR9786656 | Sensitive | lineage4.1.2.1 | None | ERR9786525 | Other | lineage4.8;lineage4.1 | None | ERR9786526 | Other | lineage4.8;lineage4.1 | None | ERR9786843 | Other | None | ERR990545 | Other | lineage3 | None | ERR9787153 | Other | lineage6.1.3 | None | ERR9896144 | Other | lineage3 | None | SRR069989 | HR-TB | lineage2 | None | SRR069978 | Pre-XDR-TB | lineage2.2.2 | None | SRR069981 | HR-TB | lineage2.2.2 | None | SRR1165584 | Other | lineage4.1.2.1 | None | SRR1162740 | Other | lineage4.1.2.1 | None | SRR1162864 | HR-TB | lineage4.1.2.1 | None | SRR1163221 | HR-TB | lineage4.1.2.1 | None | SRR1166821 | HR-TB | lineage4.1.2.1 | None | SRR1167055 | Other | lineage4.1.2.1 | None | SRR1173453 | Other | lineage4.4.1.1 | None | SRR1167384 | Other | lineage4 | None | SRR1169249 | Other | La3 | None | SRR1169306 | Other | None | SRR1180172 | Other | lineage2.2.1 | None | SRR1180137 | Other | lineage2.2.1 | None | SRR1180147 | Other | lineage2.2.1.1 | None | SRR1181091 | Other | lineage2.2.1.1 | None | SRR1180270 | Other | lineage2.2.1 | None | SRR1181020 | Other | lineage2.2.1 | None | SRR1184024 | Other | lineage2.2.1.1 | None | SRR1181328 | Other | lineage2.2.1 | None | SRR1183144 | Other | lineage2.2.1 | None | SRR1181289 | Other | lineage2.2.1 | None | SRR1183049 | Other | lineage2.2 | None | SRR1183106 | Other | lineage2.2.1.1 | None | SRR1183145 | Other | lineage2.2.1 | None | SRR13591342 | HR-TB | lineage4.1.1.3 | None | SRR12006550 | Other | lineage1.2.1.2 | None | SRR12416840 | MDR-TB | lineage4.9 | None | SRR13423544 | Other | lineage4.5 | None | SRR13861322 | Other | lineage4.9 | None | SRR13837579 | HR-TB | lineage4.9 | None | SRR13861153 | Other | lineage4.9 | None | SRR13861305 | Other | lineage4.9 | None | SRR13861326 | Other | lineage4.9 | None | SRR13861332 | Other | lineage4.9 | None | SRR13861413 | Sensitive | lineage4.9 | None | SRR13861381 | MDR-TB | lineage4.9 | None | SRR13861333 | Sensitive | lineage4.9 | None | SRR13861397 | HR-TB | lineage4.9 | None | SRR14801925 | HR-TB | lineage2.2.1 | None | SRR13861424 | RR-TB | lineage4.9 | None | SRR13861447 | RR-TB | lineage4.9 | None | SRR13861568 | Other | lineage4.9 | None | SRR13861528 | HR-TB | lineage4.9 | None | SRR13861571 | RR-TB | lineage4.9 | None |
---|