lineage | Count |
---|---|
132 | |
lineage4.9 | 8 |
lineage2.2.1 | 9 |
lineage4.1.2.1 | 4 |
lineage3.1 | 2 |
lineage4.2.1.1 | 1 |
lineage4.3.4.2.1 | 1 |
lineage4 | 22 |
lineage2.2 | 2 |
La1.8.1 | 2 |
lineage4.8 | 1 |
lineage2 | 2 |
La1 | 1 |
lineage3 | 1 |
lineage4.3.4 | 1 |
lineage4.1.2.1.1 | 1 |
lineage4.3.2 | 1 |
lineage2.2.1.1 | 1 |
lineage4.5 | 1 |
lineage4.9;La3 | 1 |
lineage3;lineage2.2.1 | 1 |
lineage6.3;lineage2.2.1 | 1 |
lineage3;lineage2.1 | 1 |
lineage4.1 | 1 |
lineage4;lineage1.1.2 | 1 |
lineage1 | 1 |
spoligotype | Count |
---|---|
None | 200 |
ID | Drug resistance | Lineage | Country iso2 | SRR6046066 | HR-TB | None | SRR6045327 | HR-TB | None | SRR6046225 | HR-TB | None | SRR6325444 | HR-TB | None | SRR6046305 | Other | lineage4.9 | None | SRR6046397 | Other | None | SRR6046362 | HR-TB | None | SRR6046514 | HR-TB | None | SRR6046460 | HR-TB | None | SRR6325448 | HR-TB | None | SRR6325447 | HR-TB | None | SRR6046540 | HR-TB | None | SRR6458423 | HR-TB | lineage2.2.1 | None | SRR6046824 | HR-TB | None | SRR6397654 | HR-TB | lineage4.1.2.1 | None | ERR294248 | HR-TB | None | SRR6325442 | HR-TB | None | ERR323034 | HR-TB | lineage3.1 | None | SRR6789626 | Other | None | SRR6832178 | HR-TB | lineage4.2.1.1 | None | ERR323036 | HR-TB | None | ERR294266 | HR-TB | None | ERR502532 | HR-TB | None | ERR502889 | Other | None | ERR5311081 | HR-TB | None | ERR5311099 | HR-TB | None | ERR323044 | HR-TB | lineage4.3.4.2.1 | None | ERR5311090 | HR-TB | None | ERR323038 | HR-TB | None | SRR7496509 | Other | None | ERR323043 | HR-TB | None | ERR323055 | HR-TB | None | ERR323045 | HR-TB | None | ERR323054 | HR-TB | lineage3.1 | None | ERR067681 | HR-TB | None | ERR323063 | HR-TB | None | ERR323108 | HR-TB | lineage4 | None | ERR1063862 | HR-TB | None | ERR1023295 | HR-TB | lineage4.1.2.1 | None | ERR1034634 | HR-TB | None | ERR1063839 | HR-TB | lineage2.2 | None | ERR1063857 | HR-TB | None | ERR1063858 | HR-TB | None | ERR108471 | HR-TB | lineage4 | None | ERR1063859 | HR-TB | None | ERR1063883 | Sensitive | lineage4 | None | ERR3283036 | HR-TB | None | ERR3283017 | HR-TB | None | ERR3283014 | HR-TB | None | ERR3283028 | Other | None | ERR3283032 | HR-TB | None | ERR133986 | HR-TB | None | ERR323115 | Sensitive | lineage4 | None | ERR3283027 | HR-TB | None | ERR3283031 | HR-TB | None | ERR3283047 | HR-TB | None | ERR3445501 | HR-TB | None | ERR3283058 | Other | lineage4.9 | None | ERR3283057 | HR-TB | lineage4 | None | ERR3439432 | Other | None | ERR3445503 | HR-TB | None | ERR3445502 | HR-TB | lineage4 | None | ERR3468544 | HR-TB | None | ERR3797016 | HR-TB | None | ERR363446 | Sensitive | lineage4 | None | ERR3797048 | HR-TB | None | ERR3797060 | Other | La1.8.1 | None | ERR3797065 | MDR-TB | lineage4 | None | ERR3797079 | Sensitive | lineage4 | None | ERR3797069 | Other | None | ERR3797063 | HR-TB | None | ERR3797064 | Sensitive | None | ERR3797083 | HR-TB | None | ERR3797082 | Other | lineage4.9 | None | ERR4769521 | HR-TB | None | ERR3797087 | Sensitive | lineage4 | None | ERR403298 | HR-TB | lineage4 | None | ERR4188350 | HR-TB | None | ERR4407463 | HR-TB | None | ERR473332 | Other | lineage4 | None | ERR5336148 | Other | None | ERR4810741 | HR-TB | None | ERR4799171 | Pre-XDR-TB | lineage4.8 | None | ERR4799478 | Pre-XDR-TB | lineage2.2.1 | None | ERR4797054 | Pre-XDR-TB | lineage2 | None | ERR4798262 | HR-TB | La1 | None | ERR4798406 | HR-TB | None | ERR4800341 | Other | lineage3 | None | ERR4811022 | HR-TB | None | ERR6358837 | HR-TB | None | ERR4811105 | HR-TB | None | ERR4811142 | MDR-TB | None | ERR6358979 | Other | None | ERR6359045 | HR-TB | None | ERR6358991 | HR-TB | None | ERR736839 | Other | None | ERR702406 | HR-TB | None | ERR736817 | HR-TB | lineage4.3.4 | None | ERR6866807 | HR-TB | lineage4 | None | ERR702404 | HR-TB | None | ERR736867 | HR-TB | None | ERR736848 | HR-TB | None | ERR736875 | HR-TB | lineage4 | None | ERR736874 | HR-TB | None | ERR760733 | MDR-TB | lineage4.1.2.1.1 | None | ERR772255 | MDR-TB | lineage4.3.2 | None | SRR1162740 | Other | lineage4.1.2.1 | None | ERR8976043 | HR-TB | None | ERR9634265 | Sensitive | None | ERR9786682 | Other | lineage4.1.2.1 | None | SRR1172234 | Other | None | SRR1169194 | Other | None | SRR1172817 | HR-TB | None | SRR1173633 | HR-TB | lineage4.9 | None | SRR1173384 | Other | lineage4 | None | SRR1173400 | Other | None | SRR1640750 | HR-TB | None | SRR1173629 | Other | None | SRR1173706 | Other | lineage4.9 | None | SRR1173778 | Other | None | SRR1173788 | Other | None | SRR1180147 | Other | lineage2.2.1.1 | None | SRR12142341 | HR-TB | None | SRR12416824 | HR-TB | None | SRR13423649 | Sensitive | lineage2.2.1 | None | SRR15368973 | Other | None | SRR1183145 | Other | lineage2.2.1 | None | SRR1184380 | HR-TB | None | SRR1196494 | MDR-TB | None | SRR19304036 | HR-TB | None | SRR18910194 | HR-TB | lineage2.2 | None | SRR18213713 | HR-TB | lineage4.5 | None | SRR19303884 | HR-TB | None | SRR26399973 | Other | lineage4.9;La3 | None | SRR25827682 | Other | None | SRR20969677 | HR-TB | lineage2 | None | SRR25827497 | Pre-XDR-TB | lineage3;lineage2.2.1 | None | SRR28119811 | Other | lineage6.3;lineage2.2.1 | None | SRR26159043 | Other | lineage4.9 | None | ERR4815604 | HR-TB | None | ERR4814536 | MDR-TB | lineage3;lineage2.1 | None | ERR176778 | HR-TB | None | SRR3675464 | HR-TB | lineage4.1 | None | ERR176779 | HR-TB | None | SRR3675502 | Other | None | SRR3675465 | HR-TB | None | ERR158583 | HR-TB | None | SRR3675482 | HR-TB | None | SRR3675486 | HR-TB | None | ERR4814352 | HR-TB | lineage2.2.1 | None | ERR161033 | HR-TB | None | SRR3675488 | HR-TB | None | ERR212121 | HR-TB | None | SRR3675501 | HR-TB | None | SRR3675221 | HR-TB | None | ERR181824 | HR-TB | lineage4 | None | ERR181887 | HR-TB | None | ERR176751 | HR-TB | None | SRR3675545 | HR-TB | None | SRR3675222 | Other | None | SRR3675236 | HR-TB | None | ERR176643 | HR-TB | None | SRR3675311 | Other | None | ERR176651 | HR-TB | None | ERR2027263 | Other | lineage4 | None | SRR3675550 | Other | None | SRR3675558 | HR-TB | None | ERR212125 | HR-TB | lineage4 | None | SRR3675574 | HR-TB | None | ERR212138 | HR-TB | lineage4 | None | ERR4816466 | HR-TB | None | ERR4818021 | Other | La1.8.1 | None | ERR4817692 | HR-TB | lineage4;lineage1.1.2 | None | SRR3675571 | HR-TB | None | SRR3742665 | HR-TB | None | ERR234659 | HR-TB | None | ERR3275196 | Other | lineage2.2.1 | nl | ERR2693239 | HR-TB | None | SRR5341418 | Other | None | ERR2514692 | Other | None | SRR5341302 | HR-TB | None | SRR5341313 | HR-TB | None | SRR5341333 | HR-TB | None | ERR2509673 | Other | lineage2.2.1 | None | ERR4818615 | Other | None | ERR4819781 | Other | lineage2.2.1 | None | ERR2446563 | Other | lineage2.2.1 | nl | SRR6045519 | HR-TB | None | SRR6045503 | HR-TB | None | SRR6045526 | HR-TB | None | ERR278594 | HR-TB | None | SRR6044835 | Sensitive | lineage4 | None | SRR6044875 | HR-TB | lineage4.9 | None | SRR6044876 | Sensitive | lineage4 | None | SRR6045952 | HR-TB | None | SRR6045010 | Other | lineage4 | None | SRR6045028 | Sensitive | lineage1 | None | SRR6045233 | HR-TB | None | SRR6044790 | HR-TB | None | SRR6044855 | Other | lineage4.9 | None |
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