TB-Profiler result

Run: ERR9634265
Summary

Run ID: ERR9634265

Sample name:

Date: 02-04-2023 11:58:16

Number of reads: 220869

Percentage reads mapped: 68.97

Strain:

Drug-resistance: Sensitive

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Drug resistance: This table reports drug-resistance associated mutations found in known resistance genes
Drug Resistance Supporting mutations
Lineage Table: The lineage is inferred by analysing lineage specific SNPs
Lineage Family Main Spoligotype RDs Frequency
lineage4.3.4.2 Euro-American (LAM) LAM1;LAM4;LAM11 RD174 0.87
Drug resistance-Associated Mutations: This table reports mutations found in candidate resistance genes which have been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction Drugs
Non-Associated Mutations: This table reports mutations found in candidate resistance genes which have not been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction
gyrA 6688 c.-614C>A upstream_gene_variant 0.29
gyrA 6700 c.-602T>C upstream_gene_variant 0.25
gyrA 6703 c.-599G>C upstream_gene_variant 0.29
gyrA 6706 c.-596G>A upstream_gene_variant 0.25
gyrA 6709 c.-593A>G upstream_gene_variant 0.33
gyrA 6712 c.-590G>C upstream_gene_variant 0.33
gyrA 6727 c.-575G>T upstream_gene_variant 0.29
gyrA 6728 c.-574_-572delCTAinsTTG upstream_gene_variant 0.25
gyrA 6745 c.-557T>C upstream_gene_variant 0.33
gyrA 6751 c.-551G>C upstream_gene_variant 0.33
gyrA 6760 c.-542G>C upstream_gene_variant 0.33
gyrA 6763 c.-539G>C upstream_gene_variant 0.38
gyrA 6775 c.-527G>C upstream_gene_variant 0.43
gyrA 6778 c.-524C>T upstream_gene_variant 0.43
gyrA 6793 c.-509T>C upstream_gene_variant 0.33
gyrB 6797 p.Gly520Thr missense_variant 0.4
gyrA 6811 c.-491C>T upstream_gene_variant 0.5
gyrA 6817 c.-485G>A upstream_gene_variant 0.5
gyrA 7355 c.54T>C synonymous_variant 0.22
gyrA 7361 c.60C>T synonymous_variant 0.25
gyrA 7362 p.Glu21Gln missense_variant 1.0
gyrA 7394 c.93T>C synonymous_variant 0.4
gyrA 7397 c.96G>C synonymous_variant 0.4
gyrA 7415 c.114C>G synonymous_variant 0.33
gyrA 7427 c.126G>C synonymous_variant 0.36
gyrA 7442 c.141G>C synonymous_variant 0.54
gyrA 7451 c.150C>G synonymous_variant 0.55
gyrA 7457 c.156T>C synonymous_variant 0.6
gyrA 7463 c.162G>C synonymous_variant 0.46
gyrA 7472 c.171T>C synonymous_variant 0.43
gyrA 7475 c.174A>G synonymous_variant 0.46
gyrA 7480 p.Phe60Tyr missense_variant 0.4
gyrA 7484 c.183T>C synonymous_variant 0.4
gyrA 7487 c.186C>A synonymous_variant 0.38
gyrA 7490 c.189C>G synonymous_variant 0.39
gyrA 7496 c.195C>G synonymous_variant 0.39
gyrA 7523 c.222C>G synonymous_variant 0.5
gyrA 7526 c.225G>C synonymous_variant 0.5
gyrA 7532 c.231T>C synonymous_variant 0.53
gyrA 7541 c.240C>G synonymous_variant 0.5
gyrA 7547 c.246C>T synonymous_variant 0.5
gyrA 7559 c.258G>C synonymous_variant 0.47
gyrA 7569 p.Ala90Ser missense_variant 0.44
gyrA 7585 p.Ser95Thr missense_variant 1.0
gyrA 7592 c.291G>C synonymous_variant 0.33
gyrA 7595 c.294C>G synonymous_variant 0.31
gyrA 7607 c.306C>G synonymous_variant 0.43
gyrA 7613 c.312G>A synonymous_variant 0.54
gyrA 7622 c.321C>T synonymous_variant 0.67
gyrA 7631 c.330G>C synonymous_variant 0.71
gyrA 7637 c.336C>T synonymous_variant 0.68
gyrA 7652 c.351C>T synonymous_variant 0.67
gyrA 7658 c.357A>G synonymous_variant 0.59
gyrA 7661 c.360C>T synonymous_variant 0.59
gyrA 7664 c.363T>C synonymous_variant 0.62
gyrA 7667 c.366C>T synonymous_variant 0.62
gyrA 7670 c.369A>G synonymous_variant 0.62
gyrA 7676 c.375G>C synonymous_variant 0.62
gyrA 7679 c.378G>C synonymous_variant 0.62
gyrA 7683 c.382_384delAGGinsCGT synonymous_variant 0.62
gyrA 7694 c.393A>G synonymous_variant 0.61
gyrA 7697 c.396C>G synonymous_variant 0.61
gyrA 7706 c.405C>T synonymous_variant 0.61
gyrA 7709 c.408G>C synonymous_variant 0.61
gyrA 7710 c.409T>C synonymous_variant 0.61
gyrA 7728 c.427_429delAGGinsCGT synonymous_variant 0.65
gyrA 7760 c.459C>T synonymous_variant 0.61
gyrA 7763 c.462T>G synonymous_variant 0.61
gyrA 7784 c.483A>G synonymous_variant 0.46
gyrA 7790 c.489G>C synonymous_variant 0.4
gyrA 7796 c.495G>T synonymous_variant 0.4
gyrA 7799 c.498A>G synonymous_variant 0.5
gyrA 7802 c.501C>G synonymous_variant 0.44
gyrA 7832 c.531G>T synonymous_variant 0.5
gyrA 7835 c.534A>G synonymous_variant 0.5
gyrA 7841 c.540C>T synonymous_variant 0.38
gyrA 7847 c.546G>C synonymous_variant 0.33
gyrA 7859 c.558A>C synonymous_variant 0.33
gyrA 7865 c.564T>C synonymous_variant 0.25
gyrA 8156 c.855T>C synonymous_variant 0.5
gyrA 8168 c.867A>G synonymous_variant 0.5
gyrA 8174 c.873C>G synonymous_variant 0.5
gyrA 8177 c.876A>C synonymous_variant 0.56
gyrA 8198 c.897T>C synonymous_variant 0.5
gyrA 8201 c.900C>A synonymous_variant 0.5
gyrA 8207 c.906T>C synonymous_variant 0.56
gyrA 8210 c.909G>A synonymous_variant 0.56
gyrA 8219 c.918T>C synonymous_variant 0.45
gyrA 8222 c.921C>T synonymous_variant 0.5
gyrA 8225 c.924T>C synonymous_variant 0.5
gyrA 8235 c.934_936delTTAinsCTG synonymous_variant 0.45
gyrA 8240 c.939C>A synonymous_variant 0.45
gyrA 8246 c.945C>G synonymous_variant 0.45
gyrA 8247 p.Ile316Val missense_variant 0.45
gyrA 8253 p.Ile318Leu missense_variant 0.45
gyrA 8267 c.966G>C synonymous_variant 0.45
gyrA 8283 p.Ile328Leu missense_variant 0.44
gyrA 8288 c.987T>C synonymous_variant 0.44
gyrA 8294 c.993T>C synonymous_variant 0.44
gyrA 8534 c.1233G>A synonymous_variant 0.6
gyrA 8535 p.Glu412Gln missense_variant 0.6
gyrA 8546 p.Asp415Glu missense_variant 0.71
gyrA 8561 c.1260A>C synonymous_variant 0.78
gyrA 8571 c.1270C>T synonymous_variant 0.75
gyrA 8600 c.1299G>A synonymous_variant 0.5
gyrA 8603 c.1302A>C synonymous_variant 0.5
gyrA 8619 c.1318T>C synonymous_variant 0.5
gyrA 8624 c.1323G>C synonymous_variant 0.5
gyrA 8627 c.1326C>G synonymous_variant 0.5
gyrA 8628 c.1327C>T synonymous_variant 0.5
gyrA 8633 c.1332C>T synonymous_variant 0.5
gyrA 8636 c.1335A>T synonymous_variant 0.43
gyrA 8645 c.1344C>A synonymous_variant 0.5
gyrA 8649 p.Arg450Lys missense_variant 0.5
gyrA 8655 p.Ile452Val missense_variant 0.43
gyrA 8663 c.1362C>T synonymous_variant 0.43
gyrA 8672 c.1371A>G synonymous_variant 0.43
gyrA 8810 c.1509A>C synonymous_variant 0.25
gyrA 8813 p.Asp504Glu missense_variant 0.25
gyrA 8816 c.1515C>G synonymous_variant 0.33
gyrA 8825 c.1524G>A synonymous_variant 0.29
gyrA 8828 c.1527T>C synonymous_variant 0.29
gyrA 8829 c.1528T>C synonymous_variant 0.29
gyrA 8840 c.1539C>T synonymous_variant 0.38
gyrA 8849 c.1548C>T synonymous_variant 0.38
gyrA 8852 c.1551T>C synonymous_variant 0.38
gyrA 8858 c.1557T>G synonymous_variant 0.43
gyrA 8867 c.1566A>G synonymous_variant 0.5
gyrA 8888 c.1587C>G synonymous_variant 0.5
gyrA 8900 c.1599G>C synonymous_variant 0.5
gyrA 8903 c.1602T>C synonymous_variant 0.5
gyrA 8915 c.1614A>G synonymous_variant 0.5
gyrA 8930 c.1629C>T synonymous_variant 0.4
gyrA 9149 c.1848C>T synonymous_variant 0.29
gyrA 9304 p.Gly668Asp missense_variant 1.0
fgd1 491248 p.Arg156Lys missense_variant 0.5
fgd1 491259 c.477T>C synonymous_variant 0.5
fgd1 491262 c.480C>T synonymous_variant 0.5
fgd1 491271 c.489C>T synonymous_variant 0.5
fgd1 491283 p.Asp167Glu missense_variant 0.5
fgd1 491286 c.504G>C synonymous_variant 0.5
fgd1 491289 c.507C>T synonymous_variant 0.5
fgd1 491295 c.513C>G synonymous_variant 0.5
fgd1 491301 c.519C>T synonymous_variant 0.5
fgd1 491304 c.522C>T synonymous_variant 0.5
fgd1 491310 c.528C>G synonymous_variant 0.5
fgd1 491313 c.531C>T synonymous_variant 0.5
fgd1 491316 c.534C>T synonymous_variant 0.67
fgd1 491321 p.Ala180Val missense_variant 0.67
fgd1 491346 c.564C>G synonymous_variant 0.67
fgd1 491349 c.567T>G synonymous_variant 0.67
fgd1 491352 c.570C>T synonymous_variant 0.67
fgd1 491355 c.573C>G synonymous_variant 0.67
mshA 575795 p.Ile150Val missense_variant 0.3
mshA 575809 c.462C>T synonymous_variant 0.45
mshA 575816 c.469C>T synonymous_variant 0.45
mshA 575821 c.474G>C synonymous_variant 0.42
mshA 575842 c.495G>C synonymous_variant 0.45
mshA 575845 c.498C>T synonymous_variant 0.42
mshA 575848 c.501C>T synonymous_variant 0.42
mshA 575864 c.517T>C synonymous_variant 0.38
mshA 575869 c.522G>A synonymous_variant 0.38
mshA 575878 c.531A>G synonymous_variant 0.31
mshA 575893 c.546C>G synonymous_variant 0.31
mshA 575906 p.Ala187Ser missense_variant 0.25
mshA 575916 p.Asp190Ala missense_variant 0.27
mshA 575923 c.576C>T synonymous_variant 0.27
mshA 575925 p.Gly193Ala missense_variant 0.25
mshA 575932 c.585G>A synonymous_variant 0.25
mshA 575939 c.592C>T synonymous_variant 0.25
mshA 575945 p.Thr200Ala missense_variant 0.18
ccsA 620583 c.693G>C synonymous_variant 0.5
ccsA 620604 c.714C>G synonymous_variant 0.58
ccsA 620605 p.Val239Ile missense_variant 0.58
ccsA 620619 c.729G>C synonymous_variant 0.58
ccsA 620622 c.732G>C synonymous_variant 0.58
ccsA 620625 c.735A>C synonymous_variant 0.58
ccsA 620649 c.759A>G synonymous_variant 0.71
ccsA 620658 c.768C>T synonymous_variant 0.67
ccsA 620676 c.786C>T synonymous_variant 0.7
ccsA 620694 c.804C>G synonymous_variant 0.75
ccsA 620698 p.Val270Ile missense_variant 0.75
ccsA 620730 c.840C>T synonymous_variant 0.62
ccsA 620733 c.843G>C synonymous_variant 0.64
ccsA 620736 c.846G>C synonymous_variant 0.62
ccsA 620739 c.849A>G synonymous_variant 0.62
ccsA 620742 c.852G>C synonymous_variant 0.62
ccsA 620748 c.858T>C synonymous_variant 0.65
ccsA 620766 c.876C>A synonymous_variant 0.65
ccsA 620778 c.888T>C synonymous_variant 0.64
ccsA 620783 p.Ala298Val missense_variant 0.67
ccsA 620793 c.903G>C synonymous_variant 0.59
ccsA 620796 c.906C>G synonymous_variant 0.6
ccsA 620802 c.912C>G synonymous_variant 0.57
ccsA 620808 c.918T>C synonymous_variant 0.54
ccsA 620809 c.919C>T synonymous_variant 0.54
ccsA 620818 p.Val310Ile missense_variant 0.55
ccsA 620832 c.942C>T synonymous_variant 0.45
ccsA 620844 c.954C>T synonymous_variant 0.27
rpoB 760088 c.282C>G synonymous_variant 0.6
rpoB 760091 c.285G>C synonymous_variant 0.5
rpoB 760101 c.295T>C synonymous_variant 0.5
rpoB 760104 c.298_300delTCGinsAGC synonymous_variant 0.5
rpoB 760112 c.306T>C synonymous_variant 0.67
rpoB 760118 c.312T>G synonymous_variant 0.67
rpoB 760121 c.315T>C synonymous_variant 0.67
rpoB 760127 c.321C>T synonymous_variant 0.67
rpoB 760130 p.Asp108Glu missense_variant 0.57
rpoB 760139 c.333A>T synonymous_variant 0.62
rpoB 760142 c.336C>G synonymous_variant 0.62
rpoB 760181 c.375T>C synonymous_variant 0.7
rpoB 760184 c.378A>G synonymous_variant 0.73
rpoB 760196 c.390C>G synonymous_variant 0.7
rpoB 760235 c.429T>C synonymous_variant 0.71
rpoB 760244 c.438G>C synonymous_variant 0.71
rpoB 760283 c.477G>C synonymous_variant 0.5
rpoB 760298 c.492G>C synonymous_variant 0.67
rpoB 760310 c.504G>C synonymous_variant 1.0
rpoB 760316 c.510C>G synonymous_variant 0.6
rpoB 760317 c.511_512delAGinsTC synonymous_variant 0.6
rpoB 760328 c.522G>C synonymous_variant 0.5
rpoB 760331 c.525G>T synonymous_variant 0.5
rpoB 760340 c.534G>T synonymous_variant 0.5
rpoB 760357 p.Thr184Ser missense_variant 0.5
rpoB 760361 c.555T>C synonymous_variant 0.5
rpoB 760376 p.Asp190Glu missense_variant 0.6
rpoB 760381 p.Thr192Met missense_variant 0.5
rpoB 760403 c.597C>T synonymous_variant 0.44
rpoB 760406 c.600G>C synonymous_variant 0.44
rpoB 760407 p.Ser201Gly missense_variant 0.44
rpoB 760415 c.609C>T synonymous_variant 0.44
rpoB 760424 c.618C>G synonymous_variant 0.4
rpoB 760430 c.624T>C synonymous_variant 0.44
rpoB 760463 c.657C>T synonymous_variant 0.25
rpoB 760475 c.669A>G synonymous_variant 0.29
rpoB 760478 c.672C>T synonymous_variant 0.29
rpoB 760481 c.675G>T synonymous_variant 0.29
rpoB 760484 c.678A>G synonymous_variant 0.29
rpoB 760490 c.684C>T synonymous_variant 0.33
rpoB 760514 c.708C>T synonymous_variant 0.42
rpoB 760532 c.726T>C synonymous_variant 0.38
rpoB 760533 p.Val243Thr missense_variant 0.38
rpoB 760541 c.735G>C synonymous_variant 0.33
rpoB 760547 c.741G>C synonymous_variant 0.33
rpoB 760561 c.757_758delCG frameshift_variant 0.3
rpoB 760567 p.Ser254Trp missense_variant 0.3
rpoB 760568 c.762_763insGC frameshift_variant 0.3
rpoB 760571 c.765G>C synonymous_variant 0.33
rpoB 760574 c.768G>C synonymous_variant 0.33
rpoB 760585 p.Asn260Ser missense_variant 0.3
rpoB 760589 c.783C>T synonymous_variant 0.27
rpoB 760591 p.Val262Ala missense_variant 0.27
rpoB 760595 c.789C>T synonymous_variant 0.3
rpoB 760596 p.Thr264Pro missense_variant 0.3
rpoB 760611 c.805T>C synonymous_variant 0.4
rpoB 760634 c.828T>C synonymous_variant 0.4
rpoB 760646 c.840C>G synonymous_variant 0.33
rpoB 760649 c.843G>C synonymous_variant 0.33
rpoB 760655 c.849A>G synonymous_variant 0.33
rpoB 760985 c.1179G>C synonymous_variant 0.29
rpoB 761036 c.1230G>C synonymous_variant 0.25
rpoB 761037 c.1231T>C synonymous_variant 0.25
rpoB 761051 c.1245G>T synonymous_variant 0.29
rpoB 761054 c.1248G>C synonymous_variant 0.29
rpoB 761057 c.1251G>C synonymous_variant 0.29
rpoB 761060 c.1254C>G synonymous_variant 0.29
rpoB 761063 c.1257C>G synonymous_variant 0.29
rpoB 761084 c.1278C>T synonymous_variant 0.4
rpoB 761132 c.1326G>T synonymous_variant 0.4
rpoB 761133 c.1327T>C synonymous_variant 0.4
rpoB 761147 c.1341C>T synonymous_variant 0.43
rpoB 761150 c.1344A>T synonymous_variant 0.43
rpoB 761153 c.1347G>A synonymous_variant 0.38
rpoB 761165 c.1359G>C synonymous_variant 0.38
rpoB 761171 c.1365C>T synonymous_variant 0.38
rpoB 761180 c.1374A>C synonymous_variant 0.43
rpoB 761189 c.1383T>C synonymous_variant 0.56
rpoB 761195 c.1389G>C synonymous_variant 0.56
rpoB 761198 c.1392G>T synonymous_variant 0.56
rpoB 761217 p.Pro471Ala missense_variant 0.5
rpoB 761220 c.1414_1416delTCGinsAGC synonymous_variant 0.45
rpoB 761234 c.1428G>C synonymous_variant 0.45
rpoB 761249 c.1443A>G synonymous_variant 0.4
rpoB 761261 c.1455G>T synonymous_variant 0.3
rpoB 761264 c.1458C>G synonymous_variant 0.3
rpoB 761300 c.1494G>C synonymous_variant 0.44
rpoB 761327 c.1521A>G synonymous_variant 0.5
rpoB 761333 c.1527G>C synonymous_variant 0.4
rpoC 764169 p.Asn267Thr missense_variant 0.33
rpoC 764182 p.Asp271Glu missense_variant 0.4
rpoC 764188 c.819A>G synonymous_variant 0.4
rpoC 764203 c.834G>C synonymous_variant 0.33
rpoC 764206 c.837T>C synonymous_variant 0.4
rpoC 764207 p.Val280Thr missense_variant 0.4
rpoC 764213 p.Arg282Lys missense_variant 0.4
rpoC 764227 c.858G>C synonymous_variant 0.5
rpoC 764239 c.870T>G synonymous_variant 0.5
rpoC 764254 c.885G>C synonymous_variant 0.43
rpoC 764257 c.888G>C synonymous_variant 0.43
rpoC 764263 c.894G>C synonymous_variant 0.43
rpoC 764266 c.897T>C synonymous_variant 0.43
rpoC 764272 c.903G>C synonymous_variant 0.43
rpoC 764278 c.909A>G synonymous_variant 0.5
rpoC 764287 c.918C>T synonymous_variant 0.5
rpoC 764293 c.924G>C synonymous_variant 0.5
rpoC 764297 p.Met310Leu missense_variant 0.5
rpoC 764302 c.933C>G synonymous_variant 0.6
rpoC 764696 c.1327C>T synonymous_variant 0.4
rpoC 764701 c.1332C>G synonymous_variant 0.4
rpoC 764746 c.1377G>T synonymous_variant 0.4
rpoC 764752 c.1383G>C synonymous_variant 0.5
rpoC 764758 c.1389C>G synonymous_variant 0.5
rpoC 764764 c.1395T>C synonymous_variant 0.4
rpoC 764803 c.1434C>T synonymous_variant 0.5
rpoC 764809 c.1440C>T synonymous_variant 0.5
rpoC 764812 c.1443C>G synonymous_variant 0.5
rpoC 764815 c.1446A>G synonymous_variant 0.5
rpoC 764827 c.1458G>C synonymous_variant 0.4
rpoC 764858 c.1489T>C synonymous_variant 0.45
rpoC 764861 c.1492C>T synonymous_variant 0.45
rpoC 764869 c.1500C>T synonymous_variant 0.45
rpoC 764875 c.1506C>T synonymous_variant 0.45
rpoC 764878 c.1509C>G synonymous_variant 0.45
rpoC 764887 c.1518G>C synonymous_variant 0.4
rpoC 764888 c.1519T>C synonymous_variant 0.4
rpoC 764893 c.1524T>C synonymous_variant 0.4
rpoC 764911 c.1542A>G synonymous_variant 0.38
rpoC 764912 p.Met515Gln missense_variant 0.38
rpoC 764935 c.1566T>C synonymous_variant 0.5
rpoC 764948 c.1579T>C synonymous_variant 0.4
rpoC 764968 c.1599T>C synonymous_variant 0.5
rpoC 764995 c.1626C>G synonymous_variant 0.67
rpoC 765445 c.2076G>C synonymous_variant 0.29
rpoC 765452 p.Ala695Arg missense_variant 0.29
rpoC 765478 c.2109T>C synonymous_variant 0.38
rpoC 765480 p.Tyr704Phe missense_variant 0.38
rpoC 765493 c.2124G>C synonymous_variant 0.46
rpoC 765496 c.2127C>G synonymous_variant 0.5
rpoC 765499 c.2130C>G synonymous_variant 0.5
rpoC 765533 p.Tyr722His missense_variant 0.46
rpoC 765547 c.2178C>T synonymous_variant 0.42
rpoC 765548 c.2179_2181delAGCinsTCG synonymous_variant 0.42
rpoC 765553 c.2184C>T synonymous_variant 0.42
rpoC 765556 c.2187G>C synonymous_variant 0.42
rpoC 765562 c.2193G>T synonymous_variant 0.38
rpoC 765577 c.2208G>T synonymous_variant 0.42
rpoC 765591 p.Arg741Gln missense_variant 0.3
rpoC 765596 p.Lys743Gln missense_variant 0.3
rpoC 765793 c.2424C>G synonymous_variant 0.22
rpoC 765796 c.2427C>T synonymous_variant 0.22
rpoC 765800 p.Phe811Leu missense_variant 0.2
rpoC 765811 c.2442T>G synonymous_variant 0.2
rpoC 765814 c.2445A>C synonymous_variant 0.2
rpoC 765817 c.2448G>C synonymous_variant 0.2
rpoC 765826 c.2457T>C synonymous_variant 0.22
rpoC 765835 c.2466C>T synonymous_variant 0.22
rpoC 765871 c.2502T>C synonymous_variant 0.33
rpoC 765875 p.Val836Ile missense_variant 0.33
rpoC 765886 c.2517C>G synonymous_variant 0.38
rpoC 765904 c.2535C>G synonymous_variant 0.25
rpoC 765908 c.2539C>T synonymous_variant 0.25
rpoC 765934 c.2565C>T synonymous_variant 0.33
rpoC 766714 c.3345G>C synonymous_variant 0.29
rpoC 766717 c.3348C>G synonymous_variant 0.29
rpoC 766720 c.3351C>T synonymous_variant 0.33
rpoC 766726 c.3357T>C synonymous_variant 0.33
rpoC 766738 c.3369G>T synonymous_variant 0.33
rpoC 766741 c.3372G>C synonymous_variant 0.33
rpoC 766747 c.3378C>T synonymous_variant 0.33
rpoC 766750 c.3381C>T synonymous_variant 0.33
rpoC 766765 c.3396A>C synonymous_variant 0.33
rpoC 766771 c.3402G>C synonymous_variant 0.33
rpoC 766774 c.3405T>C synonymous_variant 0.33
rpoC 766775 p.Arg1136Lys missense_variant 0.33
rpoC 766798 c.3429C>G synonymous_variant 0.43
rpoC 766804 c.3435A>G synonymous_variant 0.43
rpoC 766837 c.3468G>C synonymous_variant 0.36
rpoC 766843 c.3474T>C synonymous_variant 0.4
rpoC 766846 c.3477C>G synonymous_variant 0.36
rpoC 766858 c.3489C>G synonymous_variant 0.3
rpoC 766861 c.3492G>C synonymous_variant 0.27
rpoC 766864 c.3495G>C synonymous_variant 0.25
rpoC 766867 c.3498C>G synonymous_variant 0.25
rpoC 766882 c.3513C>T synonymous_variant 0.25
rpoC 766883 p.Ser1172Ala missense_variant 0.25
rpoC 766894 c.3525T>C synonymous_variant 0.38
rpoC 766895 c.3526T>C synonymous_variant 0.38
rpoC 766900 c.3531T>C synonymous_variant 0.38
rpoC 766911 p.Ile1181Thr missense_variant 0.43
rpoC 766915 p.Asp1182Glu missense_variant 0.4
rpoC 766918 c.3549C>T synonymous_variant 0.38
rpoC 766921 c.3552G>C synonymous_variant 0.38
rpoC 766931 p.Ala1188Ser missense_variant 0.4
rpoC 766942 c.3573C>T synonymous_variant 0.4
rpoC 766945 c.3576A>G synonymous_variant 0.38
rpoC 766948 c.3579G>C synonymous_variant 0.4
rpoC 766951 c.3582G>T synonymous_variant 0.44
rpoC 766963 c.3594T>C synonymous_variant 0.44
rpoC 766996 c.3627C>T synonymous_variant 0.36
rpoC 767008 c.3639G>A synonymous_variant 0.35
rpoC 767020 c.3651C>G synonymous_variant 0.4
rpoC 767023 c.3654C>T synonymous_variant 0.4
rpoC 767098 c.3729T>C synonymous_variant 0.43
rpoC 767104 c.3735C>G synonymous_variant 0.25
rpoC 767105 p.Asn1246Gln missense_variant 0.25
rpoC 767119 c.3750A>G synonymous_variant 0.29
mmpL5 775639 p.Ile948Val missense_variant 1.0
mmpL5 775817 c.2664T>C synonymous_variant 0.43
mmpL5 775826 c.2655G>T synonymous_variant 0.56
mmpL5 775832 c.2649C>T synonymous_variant 0.6
mmpL5 775850 c.2631C>T synonymous_variant 0.29
mmpL5 775856 c.2625T>C synonymous_variant 0.71
mmpL5 775862 c.2619G>C synonymous_variant 0.62
mmpL5 775865 c.2616T>C synonymous_variant 0.62
mmpL5 775883 p.Ile866Leu missense_variant 0.27
mmpL5 775886 c.2595A>C synonymous_variant 0.67
mmpL5 775889 c.2592C>G synonymous_variant 0.38
mmpL5 775893 p.His863Pro missense_variant 0.38
mmpL5 775895 p.Ile862Leu missense_variant 0.6
mmpL5 775898 c.2583G>A synonymous_variant 0.33
mmpL5 775901 c.2580G>A synonymous_variant 0.33
mmpL5 775904 c.2577G>A synonymous_variant 0.78
mmpL5 775907 c.2574C>G synonymous_variant 0.35
mmpL5 775910 c.2571G>A synonymous_variant 0.82
mmpL5 775913 p.Ala856Ser missense_variant 0.35
mmpL5 775916 c.2565T>C synonymous_variant 0.73
mmpL5 775921 c.2560C>T synonymous_variant 0.32
mmpL5 775922 c.2559G>C synonymous_variant 0.5
mmpL5 775951 c.2530C>T synonymous_variant 0.67
mmpL5 775955 p.Ile842Val missense_variant 0.23
mmpL5 775961 c.2520C>G synonymous_variant 0.86
mmpL5 775966 p.Ala839Ser missense_variant 0.65
mmpL5 775970 c.2511G>C synonymous_variant 0.7
mmpL5 775975 c.2506T>C synonymous_variant 0.82
mmpL5 775981 p.Leu834Met missense_variant 0.82
mmpL5 775991 c.2490G>A synonymous_variant 0.79
mmpL5 775994 p.Ile829Leu missense_variant 0.71
mmpL5 775997 c.2484T>G synonymous_variant 0.31
mmpL5 776000 p.Leu827Ile missense_variant 0.77
mmpL5 776005 p.Ile826Leu missense_variant 0.77
mmpL5 776009 c.2472A>G synonymous_variant 0.77
mmpL5 776030 c.2451G>T synonymous_variant 0.77
mmpL5 776036 p.Ser815Ala missense_variant 0.2
mmpL5 776039 p.Ala814Arg missense_variant 0.5
mmpL5 776042 c.2439C>G synonymous_variant 0.5
mmpL5 776045 c.2436G>C synonymous_variant 0.7
mmpL5 776048 c.2433G>C synonymous_variant 0.62
mmpL5 776051 c.2428_2430delTTGinsCTC synonymous_variant 0.2
mmpL5 776057 c.2424G>C synonymous_variant 0.5
mmpL5 776075 c.2406C>G synonymous_variant 0.57
mmpL5 776081 c.2400G>C synonymous_variant 0.57
mmpL5 776084 c.2397C>G synonymous_variant 0.4
mmpL5 776100 p.Thr794Ile missense_variant 0.5
mmpL5 777893 p.Gln196His missense_variant 0.4
rpsL 781395 c.-165T>C upstream_gene_variant 1.0
rpsL 781631 c.72G>C synonymous_variant 0.33
rpsL 781649 c.90T>C synonymous_variant 0.57
rpsL 781652 c.93T>C synonymous_variant 0.57
rpsL 781655 c.96T>C synonymous_variant 0.62
rpsL 781658 c.99A>G synonymous_variant 0.62
rpsL 781682 c.123T>C synonymous_variant 0.64
rpsL 781709 c.150G>C synonymous_variant 0.77
rpsL 781715 c.156T>C synonymous_variant 0.77
rpsL 781718 c.159C>G synonymous_variant 0.77
rpsL 781728 c.169T>C synonymous_variant 0.77
rpsL 781733 c.174G>C synonymous_variant 0.77
rpsL 781736 c.177T>C synonymous_variant 0.77
rpsL 781737 p.Gln60Gly missense_variant 0.77
rpsL 781742 c.183C>T synonymous_variant 0.77
rpsL 781751 c.192G>C synonymous_variant 0.77
rpsL 781754 c.195G>C synonymous_variant 0.77
rpsL 781760 c.201T>C synonymous_variant 0.71
rpsL 781766 c.207C>T synonymous_variant 0.71
rpsL 781814 c.255C>T synonymous_variant 0.29
rpsL 781817 c.258G>T synonymous_variant 0.29
rpsL 781829 c.270G>C synonymous_variant 0.29
rpsL 781892 c.333A>G synonymous_variant 0.33
rpsL 781901 c.342C>T synonymous_variant 0.33
rpsL 781916 c.357T>C synonymous_variant 0.43
rpsL 781929 p.Gly124Ser missense_variant 0.5
rplC 800612 c.-197A>G upstream_gene_variant 0.29
rplC 800618 c.-191T>C upstream_gene_variant 0.29
rplC 800633 c.-176T>C upstream_gene_variant 0.2
rplC 800654 c.-155T>C upstream_gene_variant 0.2
rplC 800684 c.-125G>A upstream_gene_variant 0.2
rplC 800693 c.-116A>C upstream_gene_variant 0.2
rplC 800702 c.-107G>A upstream_gene_variant 0.2
rplC 800703 c.-106T>C upstream_gene_variant 0.2
rplC 800762 c.-47T>G upstream_gene_variant 0.29
rplC 801171 c.363A>G synonymous_variant 0.29
rplC 801174 c.366T>C synonymous_variant 0.25
rplC 801195 c.387G>T synonymous_variant 0.43
rplC 801205 p.Arg133Ala missense_variant 0.43
rplC 801216 c.408C>T synonymous_variant 0.38
rplC 801222 c.414T>C synonymous_variant 0.33
rplC 801228 c.420T>C synonymous_variant 0.3
rplC 801237 c.429G>A synonymous_variant 0.22
rplC 801246 c.438C>T synonymous_variant 0.2
fbiC 1304490 c.1560C>G synonymous_variant 0.5
fbiC 1304496 c.1566T>C synonymous_variant 0.43
fbiC 1304499 c.1569T>G synonymous_variant 0.43
fbiC 1304502 c.1572G>C synonymous_variant 0.43
fbiC 1304511 c.1581C>G synonymous_variant 0.43
fbiC 1304520 c.1590A>C synonymous_variant 0.5
fbiC 1304526 c.1596T>G synonymous_variant 0.44
fbiC 1304533 c.1603T>C synonymous_variant 0.44
fbiC 1304538 c.1608C>T synonymous_variant 0.44
fbiC 1304544 c.1614T>C synonymous_variant 0.44
fbiC 1304547 c.1617C>G synonymous_variant 0.44
fbiC 1304553 c.1623C>T synonymous_variant 0.44
fbiC 1304559 p.Glu543Asp missense_variant 0.5
fbiC 1304562 c.1632G>C synonymous_variant 0.45
fbiC 1304568 c.1638T>C synonymous_variant 0.45
fbiC 1304571 c.1641G>C synonymous_variant 0.45
fbiC 1304580 c.1650T>C synonymous_variant 0.57
fbiC 1304613 c.1683T>C synonymous_variant 0.61
fbiC 1304634 c.1704C>G synonymous_variant 0.65
fbiC 1304640 c.1710A>C synonymous_variant 0.62
fbiC 1304646 c.1716T>C synonymous_variant 0.62
fbiC 1304652 c.1722C>G synonymous_variant 0.53
fbiC 1304658 c.1728C>G synonymous_variant 0.59
fbiC 1304661 c.1731C>T synonymous_variant 0.56
fbiC 1304670 c.1740G>C synonymous_variant 0.53
fbiC 1304671 p.Val581Thr missense_variant 0.53
fbiC 1304675 p.Gly582Asp missense_variant 0.53
fbiC 1304694 c.1764A>C synonymous_variant 0.62
fbiC 1304703 c.1773C>G synonymous_variant 0.54
fbiC 1304715 c.1785G>T synonymous_variant 0.54
fbiC 1304724 c.1794A>G synonymous_variant 0.58
fbiC 1304727 c.1797A>C synonymous_variant 0.57
fbiC 1304736 c.1806G>A synonymous_variant 0.53
fbiC 1304739 c.1809C>A synonymous_variant 0.53
fbiC 1304748 c.1818T>C synonymous_variant 0.53
fbiC 1304751 c.1821C>G synonymous_variant 0.53
fbiC 1304757 c.1827A>G synonymous_variant 0.53
fbiC 1304760 c.1830G>C synonymous_variant 0.53
fbiC 1304766 c.1836C>G synonymous_variant 0.5
fbiC 1304775 c.1845C>G synonymous_variant 0.5
fbiC 1304784 c.1854T>G synonymous_variant 0.53
fbiC 1304787 c.1857T>G synonymous_variant 0.53
fbiC 1304790 c.1860C>G synonymous_variant 0.53
fbiC 1304811 c.1881C>G synonymous_variant 0.56
fbiC 1304826 c.1896G>C synonymous_variant 0.44
fbiC 1304829 c.1899T>C synonymous_variant 0.44
fbiC 1304832 c.1902C>A synonymous_variant 0.44
fbiC 1304835 c.1905G>C synonymous_variant 0.44
fbiC 1304853 c.1923C>T synonymous_variant 0.55
fbiC 1304860 p.Lys644Arg missense_variant 0.56
fbiC 1304872 c.1942_1944delAGCinsTCG synonymous_variant 0.43
fbiC 1304875 p.Ile649Val missense_variant 0.43
fbiC 1304880 c.1950C>G synonymous_variant 0.43
fbiC 1304890 c.1960_1961insCC frameshift_variant 0.5
fbiC 1304893 c.1964_1965delGC frameshift_variant 0.38
fbiC 1304916 c.1986T>C synonymous_variant 0.3
fbiC 1304928 c.1998T>C synonymous_variant 0.27
fbiC 1304931 c.2001C>G synonymous_variant 0.2
fbiC 1304937 c.2007G>C synonymous_variant 0.2
atpE 1461132 p.Val30Ile missense_variant 0.6
atpE 1461149 c.105T>G synonymous_variant 0.6
atpE 1461155 c.111C>G synonymous_variant 0.6
atpE 1461158 c.114T>C synonymous_variant 0.6
atpE 1461159 p.Val39Ile missense_variant 0.6
atpE 1461170 c.126A>G synonymous_variant 0.5
atpE 1461173 c.129C>G synonymous_variant 0.5
atpE 1461176 c.132G>A synonymous_variant 0.6
atpE 1461179 c.135G>C synonymous_variant 0.6
atpE 1461182 c.138A>G synonymous_variant 0.6
atpE 1461185 c.141G>C synonymous_variant 0.5
atpE 1461197 c.153A>C synonymous_variant 0.5
atpE 1461219 c.175T>C synonymous_variant 0.5
atpE 1461224 c.180T>G synonymous_variant 0.5
atpE 1461230 c.186G>C synonymous_variant 0.5
atpE 1461233 c.189A>G synonymous_variant 0.5
atpE 1461251 c.207G>C synonymous_variant 0.5
atpE 1461254 c.210T>C synonymous_variant 0.5
rrs 1471922 n.78delT non_coding_transcript_exon_variant 0.8
rrs 1471925 n.80T>C non_coding_transcript_exon_variant 0.8
rrs 1471931 n.87delA non_coding_transcript_exon_variant 0.8
rrs 1471934 n.89A>G non_coding_transcript_exon_variant 0.8
rrs 1471986 n.141C>T non_coding_transcript_exon_variant 0.89
rrs 1472019 n.174G>A non_coding_transcript_exon_variant 1.0
rrs 1472030 n.185G>A non_coding_transcript_exon_variant 0.86
rrs 1472031 n.186G>C non_coding_transcript_exon_variant 0.83
rrs 1472032 n.187G>T non_coding_transcript_exon_variant 0.83
rrs 1472033 n.188A>C non_coding_transcript_exon_variant 0.83
rrs 1472035 n.190G>T non_coding_transcript_exon_variant 0.83
rrs 1472040 n.195T>G non_coding_transcript_exon_variant 0.83
rrs 1472041 n.196C>T non_coding_transcript_exon_variant 0.83
rrs 1472042 n.197T>G non_coding_transcript_exon_variant 0.83
rrs 1472053 n.211_212delGC non_coding_transcript_exon_variant 0.86
rrs 1472061 n.216A>T non_coding_transcript_exon_variant 0.86
rrs 1472075 n.230A>G non_coding_transcript_exon_variant 0.75
rrs 1472106 n.261G>A non_coding_transcript_exon_variant 0.83
rrs 1472108 n.263C>T non_coding_transcript_exon_variant 0.8
rrs 1472251 n.406G>A non_coding_transcript_exon_variant 0.67
rrs 1472380 n.535G>C non_coding_transcript_exon_variant 0.36
rrs 1472446 n.601T>A non_coding_transcript_exon_variant 0.53
rrs 1472452 n.607G>A non_coding_transcript_exon_variant 0.53
rrs 1472464 n.619A>G non_coding_transcript_exon_variant 0.64
rrs 1472847 n.1002G>C non_coding_transcript_exon_variant 0.88
rrs 1472848 n.1003T>A non_coding_transcript_exon_variant 0.88
rrs 1472849 n.1004C>G non_coding_transcript_exon_variant 0.88
rrs 1472858 n.1013G>T non_coding_transcript_exon_variant 0.88
rrs 1472859 n.1014G>T non_coding_transcript_exon_variant 0.88
rrs 1472860 n.1015C>G non_coding_transcript_exon_variant 0.86
rrs 1472973 n.1128A>T non_coding_transcript_exon_variant 0.72
rrs 1473104 n.1259C>T non_coding_transcript_exon_variant 0.59
rrs 1473110 n.1265T>G non_coding_transcript_exon_variant 0.55
rrs 1473111 n.1266A>G non_coding_transcript_exon_variant 0.55
rrs 1473276 n.1431A>G non_coding_transcript_exon_variant 0.67
rrs 1473290 n.1445C>T non_coding_transcript_exon_variant 0.7
rrs 1473291 n.1446_1447insT non_coding_transcript_exon_variant 0.7
rrs 1473301 n.1456T>C non_coding_transcript_exon_variant 0.7
rrl 1475353 n.1696A>T non_coding_transcript_exon_variant 0.5
rrl 1475354 n.1697A>G non_coding_transcript_exon_variant 0.5
rrl 1475355 n.1698C>T non_coding_transcript_exon_variant 0.5
rrl 1475363 n.1706C>T non_coding_transcript_exon_variant 0.67
rrl 1475379 n.1722G>A non_coding_transcript_exon_variant 0.5
rrl 1475380 n.1723C>A non_coding_transcript_exon_variant 0.5
rrl 1475381 n.1724G>C non_coding_transcript_exon_variant 0.5
rrl 1475382 n.1725A>G non_coding_transcript_exon_variant 0.5
rrl 1475395 n.1738T>C non_coding_transcript_exon_variant 0.5
rrl 1475396 n.1739C>G non_coding_transcript_exon_variant 0.5
rrl 1475397 n.1740G>T non_coding_transcript_exon_variant 0.5
rrl 1475398 n.1741C>T non_coding_transcript_exon_variant 0.5
rrl 1475402 n.1745C>T non_coding_transcript_exon_variant 0.67
rrl 1475404 n.1747A>G non_coding_transcript_exon_variant 0.67
rrl 1475419 n.1762C>T non_coding_transcript_exon_variant 0.67
rrl 1475429 n.1772G>T non_coding_transcript_exon_variant 0.67
rrl 1475452 n.1795C>A non_coding_transcript_exon_variant 0.67
inhA 1673547 c.-655T>C upstream_gene_variant 0.33
inhA 1673556 c.-646C>A upstream_gene_variant 0.4
inhA 1673679 c.-523T>G upstream_gene_variant 0.67
inhA 1673709 c.-493C>T upstream_gene_variant 0.5
fabG1 1673710 p.Leu91Ile missense_variant 0.5
fabG1 1673716 p.Ala93Gln missense_variant 0.5
inhA 1673724 c.-478A>G upstream_gene_variant 0.44
inhA 1673730 c.-472C>G upstream_gene_variant 0.44
inhA 1673748 c.-454A>G upstream_gene_variant 0.44
fabG1 1673749 p.Lys104Arg missense_variant 0.44
fabG1 1673760 p.Lys107Asn missense_variant 0.44
inhA 1673799 c.-403T>G upstream_gene_variant 0.45
inhA 1673802 c.-400A>G upstream_gene_variant 0.45
inhA 1673808 c.-394A>G upstream_gene_variant 0.45
fabG1 1673829 p.Asn130Lys missense_variant 0.29
fabG1 1673830 p.Lys131Arg missense_variant 0.33
inhA 1673838 c.-364T>G upstream_gene_variant 0.33
fabG1 1673844 p.Met135Ile missense_variant 0.33
inhA 1673847 c.-355A>C upstream_gene_variant 0.33
inhA 1673853 c.-349A>C upstream_gene_variant 0.4
inhA 1673856 c.-346T>C upstream_gene_variant 0.4
inhA 1673865 c.-337C>G upstream_gene_variant 0.5
fabG1 1673870 p.Ser144Met missense_variant 0.5
inhA 1673877 c.-325C>T upstream_gene_variant 0.5
inhA 1673898 c.-304C>T upstream_gene_variant 0.67
inhA 1673901 c.-301A>G upstream_gene_variant 0.67
fabG1 1673905 p.Ser156Ala missense_variant 0.67
inhA 1673916 c.-286A>T upstream_gene_variant 0.67
fabG1 1673917 p.Val160Leu missense_variant 0.67
inhA 1673922 c.-280T>C upstream_gene_variant 0.67
inhA 1673925 c.-277C>T upstream_gene_variant 0.57
inhA 1673934 c.-268C>T upstream_gene_variant 0.6
fabG1 1673941 p.Ala168Ser missense_variant 0.6
inhA 1673946 c.-256C>G upstream_gene_variant 0.5
inhA 1673949 c.-253G>A upstream_gene_variant 0.4
inhA 1673955 c.-247G>C upstream_gene_variant 0.5
inhA 1673961 c.-241A>C upstream_gene_variant 0.4
fabG1 1673962 p.Asn175Gly missense_variant 0.4
inhA 1673970 c.-232C>G upstream_gene_variant 0.5
inhA 1673976 c.-226T>C upstream_gene_variant 0.5
inhA 1673979 c.-223G>C upstream_gene_variant 0.5
inhA 1673982 c.-220G>C upstream_gene_variant 0.5
inhA 1673988 c.-214G>C upstream_gene_variant 0.5
rpsA 1833547 c.6G>A synonymous_variant 0.4
rpsA 1833554 p.Thr5Ser missense_variant 0.4
rpsA 1833562 c.21C>G synonymous_variant 0.5
rpsA 1833565 c.24G>C synonymous_variant 0.5
rpsA 1833574 c.33A>T synonymous_variant 0.56
rpsA 1833589 c.48A>C synonymous_variant 0.56
rpsA 1833595 c.54T>C synonymous_variant 0.56
rpsA 1833596 p.Ser19Ala missense_variant 0.5
rpsA 1833601 c.60G>A synonymous_variant 0.5
rpsA 1833607 c.66T>C synonymous_variant 0.5
rpsA 1833616 c.75A>C synonymous_variant 0.56
rpsA 1833619 c.78A>C synonymous_variant 0.56
rpsA 1833625 c.84A>G synonymous_variant 0.56
rpsA 1833628 c.87G>C synonymous_variant 0.56
rpsA 1833664 c.123C>G synonymous_variant 0.56
rpsA 1833676 c.135A>G synonymous_variant 0.62
rpsA 1833685 c.144G>C synonymous_variant 0.57
rpsA 1833688 p.Asp49Glu missense_variant 0.25
rpsA 1833694 c.153G>C synonymous_variant 0.62
rpsA 1833697 c.156C>G synonymous_variant 0.57
rpsA 1833709 c.168C>T synonymous_variant 0.67
rpsA 1833724 c.183C>T synonymous_variant 0.67
rpsA 1833727 c.186G>C synonymous_variant 0.67
rpsA 1833730 c.189C>T synonymous_variant 0.67
rpsA 1833733 c.192C>T synonymous_variant 0.67
rpsA 1833734 p.Ala65Ser missense_variant 0.67
rpsA 1833745 c.204G>C synonymous_variant 0.75
rpsA 1833772 c.231C>T synonymous_variant 0.88
rpsA 1833787 c.246C>G synonymous_variant 0.94
rpsA 1833790 c.249T>C synonymous_variant 0.94
rpsA 1833793 c.252C>T synonymous_variant 0.95
rpsA 1833802 c.261A>G synonymous_variant 0.95
rpsA 1833808 c.267G>C synonymous_variant 0.95
rpsA 1833811 c.270G>T synonymous_variant 0.95
rpsA 1833820 c.279G>A synonymous_variant 0.9
rpsA 1833832 c.291G>A synonymous_variant 0.87
rpsA 1833838 c.297G>A synonymous_variant 0.87
rpsA 1833841 c.300C>G synonymous_variant 0.82
rpsA 1833847 c.306C>G synonymous_variant 0.77
rpsA 1833856 c.315A>G synonymous_variant 0.75
rpsA 1833862 c.321G>T synonymous_variant 0.79
rpsA 1833892 c.351G>A synonymous_variant 0.72
rpsA 1833894 p.Ala118Glu missense_variant 0.72
rpsA 1833904 c.363G>A synonymous_variant 0.65
rpsA 1833928 c.387G>C synonymous_variant 0.53
rpsA 1833949 c.408T>C synonymous_variant 0.36
rpsA 1833970 c.429G>T synonymous_variant 0.38
rpsA 1833979 c.438T>C synonymous_variant 0.47
rpsA 1833988 c.447C>G synonymous_variant 0.5
rpsA 1833991 c.450C>A synonymous_variant 0.5
rpsA 1834012 c.471G>T synonymous_variant 0.58
rpsA 1834015 c.474G>C synonymous_variant 0.64
rpsA 1834021 c.480C>T synonymous_variant 0.64
rpsA 1834030 c.489C>G synonymous_variant 0.55
rpsA 1834097 c.556_557delTCinsAG synonymous_variant 0.55
rpsA 1834102 c.561T>C synonymous_variant 0.5
rpsA 1834123 c.582C>G synonymous_variant 0.5
rpsA 1834150 c.609G>C synonymous_variant 0.33
rpsA 1834153 c.612T>C synonymous_variant 0.29
rpsA 1834154 p.Asn205Gln missense_variant 0.29
rpsA 1834157 c.616T>C synonymous_variant 0.29
rpsA 1834162 c.621A>G synonymous_variant 0.29
rpsA 1834165 c.624A>G synonymous_variant 0.29
rpsA 1834169 p.Thr210Ala missense_variant 0.29
rpsA 1834177 c.636A>C synonymous_variant 0.5
rpsA 1834189 c.648G>C synonymous_variant 0.33
rpsA 1834231 c.690T>C synonymous_variant 0.29
tlyA 1917972 c.33A>G synonymous_variant 1.0
katG 2155659 p.Val151Leu missense_variant 0.2
katG 2155674 c.438G>C synonymous_variant 0.2
katG 2155680 c.432G>C synonymous_variant 0.18
katG 2155691 c.421T>C synonymous_variant 0.3
katG 2155696 p.Ala139Val missense_variant 0.27
katG 2155716 c.396T>G synonymous_variant 0.33
katG 2155722 c.390G>C synonymous_variant 0.33
katG 2155728 c.384G>C synonymous_variant 0.33
katG 2155742 p.Gly124Arg missense_variant 0.38
katG 2155747 p.Ala122Gly missense_variant 0.38
katG 2155752 c.360C>T synonymous_variant 0.38
katG 2155764 p.His116Glu missense_variant 0.38
katG 2155769 p.Ile115Val missense_variant 0.38
katG 2155770 c.342C>G synonymous_variant 0.38
katG 2155782 c.330C>G synonymous_variant 0.38
katG 2155785 c.327T>C synonymous_variant 0.29
katG 2155794 p.Ala106Ser missense_variant 0.33
katG 2155800 c.312G>C synonymous_variant 0.33
Rv1979c 2223293 c.-129A>G upstream_gene_variant 1.0
kasA 2518796 c.682C>A synonymous_variant 0.29
Rv2752c 3065016 c.1176C>T synonymous_variant 0.3
Rv2752c 3065022 c.1170G>C synonymous_variant 0.3
Rv2752c 3065028 c.1164G>C synonymous_variant 0.33
Rv2752c 3065055 c.1137T>C synonymous_variant 0.57
Rv2752c 3065061 c.1131C>T synonymous_variant 0.5
Rv2752c 3065064 c.1128G>C synonymous_variant 0.38
Rv2752c 3065085 c.1105_1107delAGGinsCGC synonymous_variant 0.38
Rv2752c 3065088 c.1104A>G synonymous_variant 0.38
Rv2752c 3065097 c.1095C>T synonymous_variant 0.43
Rv2752c 3065109 c.1081_1083delAGAinsCGC synonymous_variant 0.38
Rv2752c 3065112 c.1080C>T synonymous_variant 0.43
Rv2752c 3065115 c.1077C>T synonymous_variant 0.38
Rv2752c 3065126 p.Ser356Ala missense_variant 0.3
Rv2752c 3065133 c.1059T>C synonymous_variant 0.3
Rv2752c 3065139 c.1053C>G synonymous_variant 0.22
Rv2752c 3065142 c.1050A>C synonymous_variant 0.22
Rv2752c 3065146 p.Phe349Tyr missense_variant 0.29
Rv2752c 3065154 c.1038G>A synonymous_variant 0.29
thyA 3073868 p.Thr202Ala missense_variant 1.0
ald 3086788 c.-32T>C upstream_gene_variant 1.0
fprA 3473996 c.-11_-10insA upstream_gene_variant 1.0
Rv3236c 3612009 p.Ala370Thr missense_variant 1.0
fbiB 3642602 c.1068A>C synonymous_variant 0.3
fbiB 3642605 c.1071A>C synonymous_variant 0.3
fbiB 3642614 c.1080C>T synonymous_variant 0.3
fbiB 3642626 c.1092C>G synonymous_variant 0.33
fbiB 3642656 c.1122G>C synonymous_variant 0.33
fbiB 3642662 c.1128C>G synonymous_variant 0.33
fbiB 3642668 c.1134A>G synonymous_variant 0.33
fbiB 3642671 c.1137G>C synonymous_variant 0.33
fbiB 3642674 c.1140C>G synonymous_variant 0.33
fbiB 3642677 c.1143A>C synonymous_variant 0.33
fbiB 3642680 c.1146A>G synonymous_variant 0.38
fbiB 3642684 c.1150T>C synonymous_variant 0.38
fbiB 3642701 c.1167C>G synonymous_variant 0.43
fbiB 3642707 c.1173C>T synonymous_variant 0.33
fbiB 3642709 p.Gly392Asp missense_variant 0.33
fbiB 3642711 p.Leu393Val missense_variant 0.33
fbiB 3642719 c.1185T>C synonymous_variant 0.33
fbiB 3642743 c.1209T>C synonymous_variant 0.29
rpoA 3878079 c.429C>T synonymous_variant 0.67
rpoA 3878082 c.426T>C synonymous_variant 0.67
rpoA 3878103 c.405A>G synonymous_variant 0.5
rpoA 3878106 c.402G>C synonymous_variant 0.5
rpoA 3878118 c.390T>C synonymous_variant 0.4
rpoA 3878127 c.381G>C synonymous_variant 0.6
rpoA 3878143 p.Gly122Asp missense_variant 0.5
rpoA 3878145 c.363C>G synonymous_variant 0.43
rpoA 3878157 c.351C>G synonymous_variant 0.5
rpoA 3878160 c.348C>G synonymous_variant 0.5
rpoA 3878163 c.345C>T synonymous_variant 0.5
rpoA 3878169 c.339G>C synonymous_variant 0.5
rpoA 3878172 c.336G>C synonymous_variant 0.5
rpoA 3878175 c.333G>T synonymous_variant 0.5
rpoA 3878184 c.324C>T synonymous_variant 0.43
rpoA 3878193 c.315T>C synonymous_variant 0.43
rpoA 3878197 p.Glu104Ala missense_variant 0.38
rpoA 3878205 c.303T>C synonymous_variant 0.43
rpoA 3878217 c.291A>G synonymous_variant 0.33
clpC1 4038287 c.2418C>T synonymous_variant 1.0
clpC1 4038368 c.2337T>C synonymous_variant 0.25
clpC1 4038388 c.2317T>C synonymous_variant 0.33
clpC1 4038395 c.2310C>T synonymous_variant 0.3
clpC1 4038398 c.2307G>T synonymous_variant 0.3
clpC1 4038401 c.2302_2304delTTGinsCTC synonymous_variant 0.27
clpC1 4038410 c.2295C>T synonymous_variant 0.38
clpC1 4038416 c.2289C>T synonymous_variant 0.38
clpC1 4038419 c.2286T>C synonymous_variant 0.38
clpC1 4038434 c.2271G>C synonymous_variant 0.38
clpC1 4038444 p.Ala754Lys missense_variant 0.36
clpC1 4038446 c.2259T>C synonymous_variant 0.36
clpC1 4038456 p.Val750Glu missense_variant 0.31
clpC1 4038460 p.Leu749Met missense_variant 0.28
clpC1 4038462 p.Ala748Glu missense_variant 0.28
clpC1 4038474 p.Ser744Ala missense_variant 0.26
clpC1 4038479 c.2226C>G synonymous_variant 0.28
clpC1 4038486 p.Gly740Asn missense_variant 0.28
clpC1 4038489 p.Ala739Gly missense_variant 0.28
clpC1 4038499 p.Ser736Gly missense_variant 0.28
clpC1 4038519 p.Arg729Gln missense_variant 0.18
clpC1 4038623 c.2082A>G synonymous_variant 0.22
clpC1 4038640 p.Asp689Asn missense_variant 0.22
clpC1 4038647 c.2058T>C synonymous_variant 0.2
clpC1 4038650 c.2055C>T synonymous_variant 0.2
clpC1 4038658 p.Lys683Gln missense_variant 0.22
clpC1 4038660 c.2044_2045delTCinsAG synonymous_variant 0.22
clpC1 4038662 c.2043T>C synonymous_variant 0.22
clpC1 4038671 c.2034T>A synonymous_variant 0.25
clpC1 4038679 p.Pro676Ala missense_variant 0.22
clpC1 4038683 c.2022T>C synonymous_variant 0.33
clpC1 4038695 c.2010C>G synonymous_variant 0.22
clpC1 4038704 c.2001T>C synonymous_variant 0.22
clpC1 4038710 c.1995G>C synonymous_variant 0.22
clpC1 4038713 c.1992T>C synonymous_variant 0.3
clpC1 4038721 c.1984C>T synonymous_variant 0.4
clpC1 4038725 c.1980C>G synonymous_variant 0.4
clpC1 4038740 c.1965G>C synonymous_variant 0.44
clpC1 4038749 c.1956C>T synonymous_variant 0.43
clpC1 4038755 c.1950G>T synonymous_variant 0.33
clpC1 4038767 c.1938G>C synonymous_variant 0.33
clpC1 4038770 c.1935C>T synonymous_variant 0.33
clpC1 4038773 c.1932T>C synonymous_variant 0.33
clpC1 4038776 c.1929G>A synonymous_variant 0.33
clpC1 4038782 c.1923G>C synonymous_variant 0.4
clpC1 4038790 c.1915C>T synonymous_variant 0.4
clpC1 4038812 c.1893T>C synonymous_variant 0.67
clpC1 4038842 c.1863G>C synonymous_variant 1.0
clpC1 4038860 c.1845G>T synonymous_variant 1.0
clpC1 4038941 c.1764G>C synonymous_variant 0.67
clpC1 4038953 c.1752A>G synonymous_variant 0.4
clpC1 4038956 c.1749T>C synonymous_variant 0.4
clpC1 4038965 c.1740T>C synonymous_variant 0.4
clpC1 4038971 c.1734T>C synonymous_variant 0.4
clpC1 4038974 c.1731T>C synonymous_variant 0.33
clpC1 4038989 c.1716T>C synonymous_variant 0.29
clpC1 4038997 c.1708T>C synonymous_variant 0.29
clpC1 4039208 c.1497C>G synonymous_variant 0.25
clpC1 4039241 c.1464G>C synonymous_variant 0.29
clpC1 4039265 c.1440C>T synonymous_variant 0.25
clpC1 4039889 c.816G>C synonymous_variant 0.33
clpC1 4039898 c.807C>G synonymous_variant 0.33
clpC1 4039904 c.801A>G synonymous_variant 0.36
clpC1 4039907 c.798G>A synonymous_variant 0.36
clpC1 4039913 c.792C>T synonymous_variant 0.36
clpC1 4039931 c.774T>C synonymous_variant 0.4
clpC1 4039934 c.771G>A synonymous_variant 0.4
clpC1 4039937 c.768G>C synonymous_variant 0.43
clpC1 4039946 c.759A>T synonymous_variant 0.43
clpC1 4039952 c.753T>C synonymous_variant 0.46
clpC1 4039955 c.750G>C synonymous_variant 0.46
clpC1 4039958 c.747G>C synonymous_variant 0.46
clpC1 4039979 c.726C>G synonymous_variant 0.56
clpC1 4039991 c.714G>C synonymous_variant 0.5
clpC1 4040015 c.690G>C synonymous_variant 0.56
clpC1 4040021 c.684A>C synonymous_variant 0.56
clpC1 4040024 c.681A>G synonymous_variant 0.38
clpC1 4040033 c.672G>C synonymous_variant 0.33
clpC1 4040522 c.183T>C synonymous_variant 0.38
clpC1 4040531 c.174T>C synonymous_variant 0.38
clpC1 4040546 c.159G>C synonymous_variant 0.33
clpC1 4040552 c.153G>C synonymous_variant 0.33
clpC1 4040561 c.144A>G synonymous_variant 0.25
clpC1 4040573 c.132T>A synonymous_variant 0.25
clpC1 4040579 c.126A>G synonymous_variant 0.29
clpC1 4040582 c.123G>C synonymous_variant 0.29
clpC1 4040585 c.120A>G synonymous_variant 0.25
clpC1 4040588 c.117T>C synonymous_variant 0.25
clpC1 4040591 c.114C>T synonymous_variant 0.25
clpC1 4040594 c.111G>T synonymous_variant 0.25
clpC1 4040597 c.108C>T synonymous_variant 0.25
clpC1 4040600 c.105A>G synonymous_variant 0.29
clpC1 4040603 c.102T>G synonymous_variant 0.29
clpC1 4040606 c.99T>C synonymous_variant 0.29
clpC1 4040618 c.87C>G synonymous_variant 0.33
clpC1 4040644 c.61A>C synonymous_variant 0.33
clpC1 4040648 c.57G>A synonymous_variant 0.33
clpC1 4040654 c.51G>A synonymous_variant 0.33
embC 4239763 c.-100C>T upstream_gene_variant 1.0
embC 4241584 c.1722T>C synonymous_variant 0.4
embC 4241587 c.1725C>G synonymous_variant 0.33
embC 4241593 c.1731C>G synonymous_variant 0.33
embC 4241614 c.1752A>C synonymous_variant 0.33
embC 4241626 c.1764T>C synonymous_variant 0.29
embC 4241635 c.1773G>C synonymous_variant 0.29
embC 4241644 c.1782G>C synonymous_variant 0.29
embC 4241648 c.1786T>C synonymous_variant 0.29
embC 4241656 c.1794G>A synonymous_variant 0.33
embC 4241659 c.1797G>C synonymous_variant 0.29
embC 4241662 c.1800G>C synonymous_variant 0.29
embC 4241665 c.1803G>C synonymous_variant 0.29
embC 4241671 c.1809T>G synonymous_variant 0.38
embC 4241691 p.Gly610Ala missense_variant 0.29
embC 4241695 c.1833T>G synonymous_variant 0.29
embC 4241750 p.Leu630Val missense_variant 0.33
embC 4241755 c.1893C>G synonymous_variant 0.33
embC 4241767 c.1905C>A synonymous_variant 0.33
embC 4241769 p.Ser636Thr missense_variant 0.33
embC 4241791 c.1929G>C synonymous_variant 0.4
embC 4241803 c.1941T>G synonymous_variant 0.33
embA 4242643 c.-590C>T upstream_gene_variant 1.0
embB 4248097 c.1584C>G synonymous_variant 0.29
embB 4248112 c.1599C>G synonymous_variant 0.5
embB 4248118 c.1605T>C synonymous_variant 0.5
embB 4248124 c.1611G>C synonymous_variant 0.5
embB 4248130 c.1617G>C synonymous_variant 0.5
embB 4248133 c.1620C>G synonymous_variant 0.5
embB 4248142 c.1629T>C synonymous_variant 0.5
embB 4248143 p.Leu544Ile missense_variant 0.5
embB 4248157 c.1644A>G synonymous_variant 0.5
embB 4248158 p.Cys549Ser missense_variant 0.5
embB 4248167 p.Thr552Ala missense_variant 0.5
embB 4248170 p.Ala553Ser missense_variant 0.5
embB 4248173 p.Val554Leu missense_variant 0.5
embB 4248200 p.Ile563Val missense_variant 0.75
embB 4248206 p.Ser565Gly missense_variant 0.86
embB 4248220 c.1707A>G synonymous_variant 0.67
embB 4248225 p.Ala571Val missense_variant 0.67
embB 4248242 p.Val577Ile missense_variant 0.57
embB 4248252 p.Gly580Ala missense_variant 0.33
embB 4248256 c.1743C>G synonymous_variant 0.25
embB 4248259 p.Met582Ile missense_variant 0.25
embB 4248269 p.Met586Gln missense_variant 0.25
embB 4248275 p.Thr588Ala missense_variant 0.25
embB 4248292 c.1779G>C synonymous_variant 0.25
embB 4249160 p.Ile883Val missense_variant 1.0
whiB6 4338595 c.-75delG upstream_gene_variant 1.0
gid 4408156 p.Leu16Arg missense_variant 1.0