Rv1630 - c.279G>A
Note: the variant has been searched for in a non-representative convenience
dataset of samples from the ENA. This sampleset may contain overrepresentation
in certain categories such as geographic source, drug resistance type and
lineage. Interpretation of variant frequencies should be performed cautiously
with this in mind.
Drug resistance types
12 Sensitive
3 RR-TB
17 HR-TB
8 MDR-TB
0 Pre-XDR-TB
0 XDR-TB
45 Other
lineage Counts
| lineage | Count |
|---|---|
| La1.6 | 9 |
| lineage4.3.4.2 | 1 |
| M.canetti;lineage4.9 | 2 |
| lineage4.9 | 22 |
| lineage3.1.2 | 1 |
| lineage2.2.1.1 | 2 |
| La1.7;M.canetti;lineage4.9 | 4 |
| lineage1.2.2.1;lineage4.4.1.1 | 2 |
| M.canetti;lineage4.9;lineage9 | 1 |
| La1.7.1;M.canetti;lineage4.2;lineage6.2;lineage6.3 | 1 |
| lineage2.1;lineage4.9 | 1 |
| lineage1.1.1.1 | 1 |
| La1.7;lineage3.1;lineage4 | 1 |
| lineage4.5 | 1 |
| lineage2.2.1 | 7 |
| lineage4.1.1.3 | 2 |
| La1.7.1;M.canetti;lineage4.2;lineage4.9;lineage6.2;lineage6.3 | 1 |
| lineage4.9;lineage7 | 1 |
| La1.7;lineage4.9 | 7 |
| lineage4.3.4.2.1 | 2 |
| lineage2.1 | 1 |
| La3;lineage4.9 | 1 |
| La1.7 | 2 |
| La1.7.1;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.2;lineage6.3 | 2 |
| La3;lineage4.2;lineage4.6.3;lineage4.9;lineage9 | 2 |
| lineage4.3.1;lineage4.9;lineage6 | 1 |
| La1.7;lineage4.3.4.1 | 1 |
| lineage4.3.4.1 | 1 |
| lineage2.2.1.2 | 1 |
| La1;lineage4.9 | 1 |
| lineage4.9;lineage6.1.3 | 1 |
| lineage4.6.3;lineage4.9 | 1 |
| M.canetti;lineage1 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 85 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | ERR4769568 | Other | La1.6 | None | ERR9634265 | Sensitive | lineage4.3.4.2 | None | SRR6045399 | Other | M.canetti;lineage4.9 | None | ERR108471 | HR-TB | lineage4.9 | None | ERR13266892 | MDR-TB | lineage3.1.2 | None | ERR212125 | HR-TB | lineage4.9 | None | SRR1183106 | RR-TB | lineage2.2.1.1 | None | ERR4818110 | Sensitive | lineage4.9 | None | SRR6046196 | Other | La1.7;M.canetti;lineage4.9 | None | ERR11465714 | Other | lineage1.2.2.1;lineage4.4.1.1 | None | SRR6046385 | Sensitive | lineage4.9 | None | ERR1063856 | HR-TB | M.canetti;lineage4.9;lineage9 | None | ERR2026695 | MDR-TB | La1.7.1;M.canetti;lineage4.2;lineage6.2;lineage6.3 | None | SRR6046492 | Other | lineage4.9 | None | ERR1035138 | MDR-TB | lineage2.1;lineage4.9 | None | SRR26399491 | Sensitive | lineage1.1.1.1 | None | SRR6046783 | Other | La1.7;M.canetti;lineage4.9 | None | ERR405219 | HR-TB | La1.7;lineage3.1;lineage4 | None | ERR4769474 | HR-TB | lineage4.9 | None | ERR752229 | Other | lineage4.5 | None | SRR12142339 | HR-TB | lineage2.2.1 | None | ERR176779 | HR-TB | lineage4.9 | None | ERR11466044 | Other | lineage4.1.1.3 | None | SRR20970016 | Other | lineage2.2.1 | None | ERR11268016 | Other | La1.6 | None | ERR2026696 | MDR-TB | La1.7.1;M.canetti;lineage4.2;lineage4.9;lineage6.2;lineage6.3 | None | SRR3675441 | Other | lineage4.9 | None | SRR1180172 | Other | lineage2.2.1 | None | ERR4831117 | HR-TB | lineage4.9;lineage7 | None | SRR6045519 | MDR-TB | M.canetti;lineage4.9 | None | ERR3797046 | HR-TB | lineage4.9 | None | SRR26937107 | MDR-TB | lineage2.2.1 | None | SRR3675488 | Other | La1.7;lineage4.9 | None | ERR11465511 | Other | lineage4.3.4.2.1 | None | SRR1180147 | Other | lineage2.2.1.1 | None | SRR1183144 | Other | lineage2.2.1 | None | SRR22251329 | Other | lineage2.1 | None | SRR6045887 | Other | La1.7;M.canetti;lineage4.9 | None | SRR5341456 | Other | lineage4.9 | None | ERR4811493 | HR-TB | lineage4.9 | None | ERR176778 | HR-TB | lineage4.9 | None | ERR3283055 | HR-TB | lineage4.9 | None | SRR3675510 | Sensitive | La3;lineage4.9 | None | SRR3675505 | Other | La1.7;M.canetti;lineage4.9 | None | ERR11268035 | Other | La1.6 | None | SRR3675222 | Other | La1.7 | None | SRR3675385 | Other | La1.7;lineage4.9 | None | ERR2026698 | HR-TB | La1.7.1;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.2;lineage6.3 | None | SRR6046460 | MDR-TB | La3;lineage4.2;lineage4.6.3;lineage4.9;lineage9 | None | SRR3675501 | Other | La1.7;lineage4.9 | None | SRR6046299 | Other | lineage4.3.1;lineage4.9;lineage6 | None | SRR3675492 | Other | La1.7;lineage4.9 | None | ERR11268018 | Other | La1.6 | None | ERR2026697 | HR-TB | La1.7.1;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.2;lineage6.3 | None | ERR11267973 | Other | La1.6 | None | ERR4830353 | Other | La1.7 | None | SRR3675267 | Other | La1.7;lineage4.9 | None | ERR2446566 | Other | lineage4.9 | None | ERR11465802 | Other | La1.7;lineage4.3.4.1 | None | ERR4819051 | Sensitive | lineage4.9 | None | SRR29096174 | Sensitive | La1.7;lineage4.9 | None | ERR11465801 | Other | lineage4.3.4.1 | None | SRR18549032 | HR-TB | lineage2.2.1.2 | None | SRR20969708 | HR-TB | lineage2.2.1 | None | SRR20969731 | Other | lineage2.2.1 | None | ERR1034634 | HR-TB | lineage4.9 | None | ERR11465711 | Other | lineage1.2.2.1;lineage4.4.1.1 | None | ERR11267990 | Other | La1.6 | None | ERR405209 | Sensitive | La1.7;lineage4.9 | None | ERR4769497 | Other | La1;lineage4.9 | None | ERR11268040 | Other | La1.6 | None | SRR6045010 | Sensitive | lineage4.9 | None | ERR3445504 | Other | lineage4.9;lineage6.1.3 | None | ERR176651 | Other | lineage4.9 | None | SRR6044875 | Sensitive | lineage4.9 | None | ERR4769554 | RR-TB | lineage4.9 | None | SRR6046362 | MDR-TB | La3;lineage4.2;lineage4.6.3;lineage4.9;lineage9 | None | SRR6046577 | Other | lineage4.6.3;lineage4.9 | None | ERR4820205 | Sensitive | lineage4.1.1.3 | None | ERR11267995 | Other | La1.6 | None | ERR11268015 | Other | La1.6 | None | ERR181887 | Other | lineage4.9 | None | SRR3675461 | RR-TB | lineage4.9 | None | ERR176518 | Sensitive | lineage4.3.4.2.1 | None | SRR15014655 | Other | M.canetti;lineage1 | None |
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