SRR6511621
|
Sensitive
|
lineage4.9
|
None
|
SRR3675561
|
Other
|
M.canetti;lineage2.1;lineage4.9
|
None
|
ERR1023295
|
MDR-TB
|
M.canetti;lineage2.1;lineage4.1.2.1
|
None
|
SRR3675464
|
HR-TB
|
lineage2.1;lineage4.9;lineage6.3;lineage8
|
None
|
ERR108471
|
HR-TB
|
lineage4.9
|
None
|
SRR6045948
|
MDR-TB
|
M.canetti;lineage2.1;lineage4.9
|
None
|
SRR6325444
|
MDR-TB
|
M.canetti;lineage2.1;lineage6.3
|
None
|
SRR5341453
|
Other
|
lineage4.9
|
None
|
SRR3675518
|
MDR-TB
|
M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3
|
None
|
ERR176643
|
Other
|
La3;lineage4.9
|
None
|
ERR8479578
|
Sensitive
|
lineage1.1.3.1
|
None
|
ERR176766
|
HR-TB
|
lineage2.1;lineage4.9
|
None
|
SRR9970978
|
Sensitive
|
La1;lineage4.1.2
|
None
|
ERR4831117
|
HR-TB
|
lineage4.9;lineage7
|
None
|
SRR6046259
|
Sensitive
|
lineage4.9
|
None
|
ERR3283017
|
MDR-TB
|
M.canetti;lineage2.1;lineage4.1.4;lineage4.3.1;lineage4.9
|
None
|
ERR779852
|
Sensitive
|
lineage4.9
|
None
|
SRR1183111
|
HR-TB
|
lineage4.9
|
None
|
ERR5311094
|
HR-TB
|
lineage4.9
|
None
|
SRR3675585
|
Sensitive
|
lineage4.9
|
None
|
ERR8976043
|
HR-TB
|
lineage2.1;lineage2.2;lineage6.3
|
None
|
SRR3675320
|
MDR-TB
|
M.canetti;lineage2.1;lineage4.3.1;lineage4.9
|
None
|
ERR323033
|
MDR-TB
|
La3;M.canetti;lineage2.1;lineage4.9
|
None
|
ERR3077978
|
RR-TB
|
lineage1.1
|
None
|
SRR5341299
|
HR-TB
|
lineage4.9
|
None
|
ERR323041
|
HR-TB
|
M.canetti;lineage2.1
|
None
|
ERR386953
|
HR-TB
|
M.canetti;lineage2.1;lineage4.9
|
None
|
SRR5341469
|
HR-TB
|
lineage4.9
|
None
|
SRR1165584
|
Other
|
lineage4.1.2.1
|
None
|
ERR4797264
|
Sensitive
|
lineage4.9
|
None
|
ERR9119096
|
RR-TB
|
lineage4.3.3
|
None
|
SRR1183965
|
Sensitive
|
lineage4.9
|
None
|
SRR5341412
|
Pre-XDR-TB
|
lineage3
|
None
|
ERR11252612
|
Other
|
La3;lineage4.9
|
None
|
SRR3675554
|
HR-TB
|
M.canetti;lineage2.1;lineage4.9;lineage6.3
|
None
|
ERR987722
|
MDR-TB
|
|
None
|
SRR5341387
|
Other
|
lineage4.9
|
None
|
ERR473314
|
HR-TB
|
M.canetti;lineage2.1;lineage4.9
|
None
|
SRR1162864
|
Other
|
lineage4.1.2.1
|
None
|
SRR6044815
|
Other
|
lineage4.9
|
None
|
ERR323047
|
HR-TB
|
La3;M.canetti;lineage2.1;lineage4.9
|
None
|
ERR736865
|
HR-TB
|
lineage4.3.2;lineage4.9
|
None
|
SRR1167384
|
Other
|
La3;lineage4.9
|
None
|
SRR3675572
|
Other
|
|
None
|
SRR3675444
|
HR-TB
|
M.canetti;lineage2.1;lineage4.9
|
None
|
ERR4796254
|
Sensitive
|
lineage4.9
|
None
|
ERR3797016
|
HR-TB
|
M.canetti;lineage2.1;lineage4.9
|
None
|
SRR6045952
|
HR-TB
|
M.canetti;lineage2.1;lineage4.9;lineage6.3
|
None
|
ERR4818021
|
Other
|
La1.2.BCG;La1.8.1
|
None
|
SRR3675508
|
Other
|
lineage2.1;lineage4.9;lineage6.3
|
None
|
ERR3468607
|
Other
|
lineage4.9
|
None
|
ERR1035239
|
MDR-TB
|
M.canetti;lineage2.1;lineage4.9
|
None
|
ERR736872
|
HR-TB
|
lineage4.9
|
None
|
ERR4817893
|
Other
|
La3;lineage4.8
|
None
|
SRR6046514
|
MDR-TB
|
M.canetti;lineage2.1;lineage4.9
|
None
|
ERR294248
|
MDR-TB
|
lineage2.1;lineage4.9
|
None
|
ERR5311083
|
HR-TB
|
M.canetti;lineage2.1;lineage4.9
|
None
|
SRR1183049
|
RR-TB
|
lineage2.2
|
None
|
ERR323034
|
MDR-TB
|
La3;M.canetti;lineage2.1;lineage3.1
|
None
|
SRR5535933
|
Other
|
lineage4.9
|
None
|
ERR124651
|
MDR-TB
|
La3;M.canetti;lineage2.1;lineage4.1.4;lineage4.9;lineage6.3
|
None
|
ERR5311100
|
MDR-TB
|
M.canetti;lineage2.1;lineage4.9
|
None
|
ERR323039
|
HR-TB
|
La2;lineage4.9
|
None
|
ERR3797028
|
HR-TB
|
M.canetti;lineage4.9
|
None
|
ERR2026697
|
HR-TB
|
La1.7.1;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.2;lineage6.3
|
None
|
ERR126608
|
HR-TB
|
La3;M.canetti;lineage2.1;lineage4.9
|
None
|
ERR926162
|
Sensitive
|
lineage4.9
|
None
|
SRR6325445
|
HR-TB
|
M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3
|
None
|
ERR736848
|
Other
|
lineage4.9
|
None
|
ERR323040
|
HR-TB
|
La3;M.canetti;lineage2.1;lineage4.9;lineage6.3
|
None
|
SRR3675467
|
Other
|
lineage2.1;lineage4.9;lineage6.3
|
None
|
SRR3675486
|
HR-TB
|
M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3
|
None
|
ERR736839
|
HR-TB
|
M.canetti;lineage4.9
|
None
|
SRR5341384
|
HR-TB
|
lineage4.9
|
None
|
ERR5311078
|
MDR-TB
|
M.canetti;lineage2.1;lineage4.9;lineage6.3
|
None
|
SRR14801749
|
HR-TB
|
lineage4.9
|
None
|
SRR3675461
|
RR-TB
|
lineage4.9
|
None
|
ERR323064
|
MDR-TB
|
La3;M.canetti;lineage2.1;lineage4.9
|
None
|
SRR6789626
|
Other
|
|
None
|
ERR4798648
|
MDR-TB
|
lineage3.1.2.2
|
None
|
SRR10315567
|
HR-TB
|
lineage2.2.1
|
None
|
ERR294266
|
HR-TB
|
lineage4.2;lineage4.8.1;lineage4.9
|
None
|
ERR5311082
|
MDR-TB
|
M.canetti;lineage2.1;lineage4.1.4;lineage4.9
|
None
|
SRR10808805
|
Other
|
La1;lineage4.9
|
None
|
ERR9634265
|
Sensitive
|
lineage4.3.4.2
|
None
|
ERR278594
|
HR-TB
|
lineage2.1;lineage4.9
|
None
|
SRR3675515
|
HR-TB
|
M.canetti;lineage2.1;lineage4.9
|
None
|
ERR323053
|
MDR-TB
|
La2;lineage4.9;lineage9
|
None
|
ERR5311089
|
HR-TB
|
M.canetti;lineage2.1;lineage4.9
|
None
|
ERR926159
|
Sensitive
|
lineage4.9
|
None
|
ERR4816466
|
HR-TB
|
lineage4.9
|
None
|
ERR760733
|
MDR-TB
|
lineage4.1.2.1.1
|
None
|
ERR4188350
|
HR-TB
|
M.canetti;lineage2.1;lineage4.9
|
None
|
ERR971389
|
Sensitive
|
lineage4.9
|
None
|
ERR5311099
|
MDR-TB
|
M.canetti;lineage2.1;lineage4.9
|
None
|
ERR2026696
|
MDR-TB
|
La1.7.1;M.canetti;lineage4.2;lineage4.9;lineage6.2;lineage6.3
|
None
|
SRR3675449
|
Other
|
M.canetti;lineage4.9
|
None
|
ERR5336148
|
Other
|
lineage2.1;lineage6.3
|
None
|
SRR3675246
|
Other
|
lineage4.9
|
None
|
ERR323055
|
MDR-TB
|
La3;M.canetti;lineage2.1;lineage4.9
|
None
|
ERR5311096
|
HR-TB
|
M.canetti;lineage2.1;lineage4.9;lineage6.3
|
None
|
ERR5311102
|
MDR-TB
|
M.canetti;lineage2.1;lineage4.9
|
None
|
ERR736834
|
Sensitive
|
lineage4.9
|
None
|
ERR5908228
|
RR-TB
|
lineage4.3.3
|
None
|
ERR4798262
|
HR-TB
|
La1.2.BCG
|
None
|
ERR323054
|
MDR-TB
|
La3;M.canetti;lineage3.1
|
None
|
SRR6325448
|
HR-TB
|
M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3
|
None
|
SRR6325442
|
HR-TB
|
lineage2.1;lineage4.1.1.1;lineage6.3
|
None
|
SRR1640750
|
Other
|
|
None
|
SRR3675545
|
Other
|
La3;M.canetti;lineage2.1;lineage4.9;lineage6.3
|
None
|
SRR3675568
|
HR-TB
|
M.canetti;lineage2.1;lineage4.9;lineage6.3;lineage8
|
None
|
ERR3275196
|
Other
|
lineage2.2.1
|
nl
|
ERR502524
|
HR-TB
|
lineage4.9;lineage6.3
|
None
|
ERR038268
|
HR-TB
|
La3;M.canetti;lineage4.8;lineage4.9
|
None
|
SRR1180137
|
Other
|
lineage2.2.1
|
None
|
ERR176658
|
HR-TB
|
M.canetti;lineage2.1;lineage4.9
|
None
|
ERR323066
|
Sensitive
|
lineage4.9
|
None
|
ERR3283040
|
HR-TB
|
lineage4.9
|
None
|
SRR28351584
|
HR-TB
|
lineage2.2.1
|
None
|
SRR3675507
|
Other
|
lineage4.9
|
None
|
ERR2026698
|
HR-TB
|
La1.7.1;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.2;lineage6.3
|
None
|
SRR6044875
|
Sensitive
|
lineage4.9
|
None
|
ERR987729
|
HR-TB
|
lineage3.1.2.1;lineage3.1.2.2
|
None
|
SRR9971041
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR323058
|
HR-TB
|
La3;M.canetti;lineage2.1;lineage4.9
|
None
|
ERR1063856
|
HR-TB
|
M.canetti;lineage4.9;lineage9
|
None
|
ERR176568
|
HR-TB
|
La3;lineage2.1;lineage4.9
|
None
|
SRR3675506
|
HR-TB
|
M.canetti;lineage2.1;lineage4.9
|
None
|
ERR5311081
|
MDR-TB
|
M.canetti;lineage2.1;lineage4.9
|
None
|
ERR8665994
|
Other
|
lineage4.9
|
None
|
ERR4819932
|
Other
|
lineage4.7
|
None
|
SRR9970980
|
HR-TB
|
lineage4.1.2
|
None
|
ERR473277
|
HR-TB
|
La3;M.canetti;lineage4.9
|
None
|
ERR5311101
|
MDR-TB
|
M.canetti;lineage2.1;lineage4.9
|
None
|
ERR124642
|
MDR-TB
|
M.canetti;lineage2.1;lineage4.1.4;lineage4.9;lineage6.3
|
None
|
SRR1163221
|
MDR-TB
|
lineage4.1.2.1
|
None
|
SRR6044790
|
Other
|
lineage2.1;lineage4.9
|
None
|
ERR736863
|
HR-TB
|
La3;M.canetti;lineage2.1;lineage4.9;lineage6.3
|
None
|
SRR1165628
|
Other
|
La3;lineage4.9
|
None
|
ERR4798099
|
Other
|
lineage4.9
|
None
|
ERR1035138
|
MDR-TB
|
lineage2.1;lineage4.9
|
None
|
ERR1873396
|
Pre-XDR-TB
|
M.canetti;lineage2.2
|
None
|
SRR3675216
|
Other
|
lineage2.1;lineage4.9
|
None
|
ERR2027263
|
Other
|
lineage4
|
None
|
ERR3797015
|
HR-TB
|
lineage4.9
|
None
|
SRR3675235
|
Sensitive
|
lineage4.9
|
None
|
SRR5341330
|
Other
|
lineage4.9
|
None
|
ERR3468544
|
Other
|
lineage2.1;lineage4.9
|
None
|
ERR4797184
|
Sensitive
|
lineage4.9
|
None
|
ERR3283016
|
HR-TB
|
La3;M.canetti;lineage2.1;lineage4.9
|
None
|
SRR15014655
|
Other
|
M.canetti;lineage1
|
None
|
SRR5341461
|
HR-TB
|
lineage4.9
|
None
|
SRR1196474
|
Other
|
lineage3.1.1
|
None
|
SRR6046644
|
HR-TB
|
La1.6;M.canetti;lineage4.8.1;lineage4.9;lineage6.3
|
None
|
SRR6044942
|
HR-TB
|
lineage4.9
|
None
|
ERR751326
|
Other
|
lineage4.9
|
None
|
SRR6045290
|
RR-TB
|
M.canetti;lineage2.1;lineage4.9
|
None
|
ERR126618
|
MDR-TB
|
La3;M.canetti;lineage2.1;lineage4.9;lineage6.3
|
None
|
SRR3675450
|
HR-TB
|
La3;M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3
|
None
|
ERR176751
|
Other
|
lineage4.9
|
None
|
ERR1034634
|
HR-TB
|
lineage4.9
|
None
|
ERR4797054
|
Pre-XDR-TB
|
lineage2.1
|
None
|
SRR6045785
|
MDR-TB
|
lineage4.2;lineage4.8.1;lineage4.9
|
None
|
ERR5311090
|
MDR-TB
|
M.canetti;lineage2.1;lineage4.9
|
None
|
SRR1183106
|
RR-TB
|
lineage2.2.1.1
|
None
|
ERR1873393
|
HR-TB
|
M.canetti;lineage2.1;lineage4.9
|
None
|
ERR4818110
|
Sensitive
|
lineage4.9
|
None
|
ERR323038
|
HR-TB
|
La3;M.canetti;lineage2.1;lineage4.9
|
None
|
ERR4814536
|
MDR-TB
|
M.canetti;lineage2.1;lineage3
|
None
|
SRR11662690
|
HR-TB
|
lineage4.9
|
None
|
SRR5341456
|
Other
|
lineage4.9
|
None
|
ERR4811493
|
HR-TB
|
lineage4.9
|
None
|
SRR26159047
|
Other
|
lineage4.6.3;lineage4.9
|
None
|
ERR2514692
|
Other
|
|
None
|
ERR212033
|
Other
|
lineage4.9
|
None
|
ERR124652
|
HR-TB
|
La3;M.canetti;lineage2.1;lineage4.9
|
None
|
ERR126600
|
HR-TB
|
La3;M.canetti;lineage2.1;lineage4.9;lineage6.3
|
None
|
ERR926156
|
Sensitive
|
lineage4.9
|
None
|
SRR1180226
|
HR-TB
|
lineage4.9
|
None
|
SRR19295647
|
Sensitive
|
lineage4.9
|
None
|
SRR1184372
|
MDR-TB
|
|
None
|
SRR7240492
|
HR-TB
|
La1.7.1
|
None
|
SRR1173453
|
Other
|
lineage4.4.1.1
|
None
|
ERR926165
|
Sensitive
|
lineage4.9
|
None
|
SRR3675558
|
HR-TB
|
M.canetti;lineage4.1.1.3;lineage6.3;lineage8
|
None
|
ERR323060
|
HR-TB
|
La3;M.canetti;lineage2.1;lineage4.9
|
None
|
ERR5311098
|
HR-TB
|
M.canetti;lineage2.1;lineage4.9;lineage6.3
|
None
|
ERR6358837
|
HR-TB
|
La3;M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3
|
None
|
SRR29096410
|
Other
|
lineage4.9
|
None
|
ERR323062
|
Sensitive
|
lineage4.9
|
None
|
ERR926155
|
Sensitive
|
lineage4.9
|
None
|
ERR9786694
|
Other
|
lineage4.1.2.1
|
None
|
SRR1158918
|
Sensitive
|
lineage4.9
|
None
|
SRR3675322
|
HR-TB
|
M.canetti;lineage2.1;lineage4.1.4;lineage4.9
|
None
|
ERR137286
|
Other
|
lineage4.9
|
None
|
ERR4188342
|
MDR-TB
|
M.canetti;lineage2.1;lineage4.9
|
None
|
SRR6046540
|
Other
|
lineage2.1;lineage4.9
|
None
|
SRR1165506
|
Other
|
lineage4.1.2.1
|
None
|
SRR1172310
|
HR-TB
|
lineage4.9
|
None
|
ERR323063
|
HR-TB
|
La3;M.canetti;lineage2.1;lineage4.9
|
None
|
ERR1063896
|
Sensitive
|
|
None
|
SRR3675520
|
Other
|
La1.7.X-unk4;lineage4.9
|
None
|
SRR1159378
|
Other
|
lineage4.9
|
None
|
SRR1184298
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR18003019
|
Other
|
lineage2.2.1
|
None
|
ERR772255
|
MDR-TB
|
lineage2.1;lineage4.3.2
|
None
|
ERR2026695
|
MDR-TB
|
La1.7.1;M.canetti;lineage4.2;lineage6.2;lineage6.3
|
None
|
ERR323036
|
HR-TB
|
La3;M.canetti;lineage2.1;lineage4.9
|
None
|
SRR10315466
|
RR-TB
|
lineage2.2.1
|
None
|
SRR5341341
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR1166821
|
Other
|
lineage4.1.2.1
|
None
|
SRR1174897
|
MDR-TB
|
lineage4.9;lineage9
|
None
|
ERR3283030
|
HR-TB
|
lineage4.9
|
None
|
ERR161033
|
MDR-TB
|
M.canetti;lineage2.1;lineage4.9
|
None
|
SRR5341470
|
MDR-TB
|
lineage4.9;lineage9
|
None
|
ERR926161
|
Sensitive
|
lineage4.9
|
None
|
SRR9970981
|
RR-TB
|
lineage4.3.2.1
|
None
|
SRR6325447
|
MDR-TB
|
lineage2.1;lineage4.1.1.1;lineage6.3
|
None
|