lineage | Count |
---|---|
62 | |
lineage2.2.1 | 12 |
lineage4 | 52 |
lineage4.1.2.1 | 9 |
lineage5.2 | 2 |
lineage1.1 | 1 |
lineage3.1 | 2 |
lineage4.1.1.3 | 3 |
lineage4.3.3 | 3 |
lineage4.3.4.2.1 | 4 |
lineage4.1.2 | 1 |
lineage4.9 | 40 |
La1.8.1 | 2 |
lineage4;lineage3.1 | 1 |
lineage4.5 | 2 |
lineage4.1.2.1.1 | 1 |
lineage4.3.2 | 1 |
lineage2.2.2 | 1 |
lineage4.4.1.1 | 1 |
lineage2.2.1.1 | 1 |
lineage1.1.1.1 | 1 |
lineage4.1 | 2 |
lineage3;lineage2.1 | 1 |
lineage2.1 | 1 |
lineage4;lineage1.1.2 | 1 |
lineage4.2.1 | 2 |
lineage5.1.4 | 1 |
lineage3 | 4 |
lineage4;lineage1.1 | 1 |
spoligotype | Count |
---|---|
None | 215 |
ID | Drug resistance | Lineage | Country iso2 | SRR6325448 | HR-TB | None | SRR6046604 | Sensitive | lineage2.2.1 | None | SRR6046514 | HR-TB | None | SRR6325447 | HR-TB | None | SRR6046644 | HR-TB | None | SRR6325442 | HR-TB | None | SRR6046802 | Other | lineage4 | None | SRR6046897 | Sensitive | lineage4 | None | SRR6458421 | MDR-TB | lineage2.2.1 | None | SRR6397654 | HR-TB | lineage4.1.2.1 | None | SRR6046878 | HR-TB | lineage4 | None | ERR4872094 | MDR-TB | lineage5.2 | None | ERR3077978 | Other | lineage1.1 | None | ERR323034 | HR-TB | lineage3.1 | None | ERR11465665 | Other | lineage4.1.1.3 | None | ERR294248 | HR-TB | None | SRR6831950 | Other | lineage4.3.3 | None | ERR4831638 | Sensitive | None | ERR323038 | HR-TB | None | ERR323036 | HR-TB | None | ERR5311099 | HR-TB | None | ERR5311081 | HR-TB | None | ERR5311090 | HR-TB | None | ERR323044 | HR-TB | lineage4.3.4.2.1 | None | SRR9970978 | Sensitive | lineage4.1.2 | None | ERR323108 | HR-TB | lineage4 | None | ERR323055 | HR-TB | None | ERR323041 | HR-TB | None | ERR323054 | HR-TB | lineage3.1 | None | ERR323063 | HR-TB | None | ERR323107 | Other | lineage4 | None | ERR3468544 | HR-TB | None | ERR11466044 | Other | lineage4.1.1.3 | None | ERR3283017 | HR-TB | None | ERR1023295 | HR-TB | lineage4.1.2.1 | None | ERR11465511 | Sensitive | lineage4.3.4.2.1 | None | ERR349264 | Sensitive | lineage4 | None | ERR349265 | Sensitive | lineage4 | None | ERR349266 | Sensitive | lineage4.9 | None | ERR349298 | Sensitive | lineage4 | None | ERR349299 | Sensitive | lineage4 | None | ERR349296 | Sensitive | lineage4 | None | ERR349300 | Sensitive | lineage4.9 | None | ERR363426 | Sensitive | lineage4 | None | ERR349330 | Sensitive | lineage4 | None | ERR363421 | Sensitive | lineage4 | None | ERR363437 | Sensitive | lineage4 | None | ERR363445 | Sensitive | lineage4 | None | ERR363446 | Sensitive | lineage4 | None | ERR363447 | Sensitive | lineage4 | None | ERR363456 | Sensitive | lineage4 | None | ERR363449 | Sensitive | lineage4 | None | ERR363453 | Sensitive | lineage4 | None | ERR363490 | Sensitive | lineage4 | None | ERR363479 | Sensitive | lineage4 | None | ERR363499 | Sensitive | lineage4 | None | ERR363474 | Sensitive | lineage4 | None | ERR363498 | Sensitive | lineage4 | None | ERR363500 | Sensitive | lineage4 | None | ERR363502 | Sensitive | lineage4 | None | ERR369158 | Sensitive | lineage4 | None | ERR363506 | Sensitive | lineage4 | None | ERR363509 | Sensitive | lineage4 | None | ERR373946 | Sensitive | lineage4 | None | ERR369159 | Sensitive | lineage4 | None | ERR369160 | Sensitive | lineage4.9 | None | ERR369162 | Sensitive | lineage4 | None | ERR369163 | Sensitive | lineage4 | None | ERR373945 | HR-TB | lineage4 | None | ERR3797016 | HR-TB | None | ERR373947 | Sensitive | lineage4 | None | ERR3797014 | Other | None | ERR3797082 | Other | lineage4.9 | None | ERR3797017 | Other | None | ERR3797023 | HR-TB | La1.8.1 | None | ERR3797061 | Other | None | ERR400326 | Sensitive | lineage4 | None | ERR3797083 | HR-TB | None | ERR400320 | Sensitive | lineage4 | None | ERR400336 | Sensitive | lineage4 | None | ERR405219 | HR-TB | lineage4;lineage3.1 | None | ERR400345 | Other | lineage4 | None | ERR4797350 | Sensitive | lineage4.9 | None | ERR4797313 | HR-TB | None | ERR4178226 | Sensitive | lineage4 | None | ERR4188350 | HR-TB | None | ERR4798431 | HR-TB | None | ERR4812155 | Sensitive | None | ERR4799547 | Sensitive | lineage2.2.1 | None | ERR4811031 | Sensitive | lineage4.5 | None | ERR4811030 | Sensitive | None | ERR6865502 | Sensitive | lineage4 | None | ERR6358991 | HR-TB | None | ERR5908228 | Other | lineage4.3.3 | None | ERR6358837 | HR-TB | None | ERR6866547 | Sensitive | lineage4 | None | ERR9119096 | Other | lineage4.3.3 | None | ERR760733 | MDR-TB | lineage4.1.2.1.1 | None | ERR772255 | MDR-TB | lineage4.3.2 | None | ERR8976043 | HR-TB | None | SRR069981 | HR-TB | lineage2.2.2 | None | ERR9634265 | Sensitive | None | ERR9119500 | MDR-TB | lineage5.2 | None | ERR9119669 | HR-TB | None | SRR10808805 | Sensitive | None | SRR1162740 | Other | lineage4.1.2.1 | None | SRR1162864 | HR-TB | lineage4.1.2.1 | None | SRR1167055 | Other | lineage4.1.2.1 | None | SRR1165506 | Other | lineage4.1.2.1 | None | SRR1163221 | HR-TB | lineage4.1.2.1 | None | SRR1165423 | Other | lineage4.1.2.1 | None | SRR1175508 | Other | lineage4.9 | None | SRR1173453 | Other | lineage4.4.1.1 | None | SRR1180172 | Other | lineage2.2.1 | None | SRR13423544 | Other | lineage4.5 | None | SRR1183106 | Other | lineage2.2.1.1 | None | SRR1183144 | Other | lineage2.2.1 | None | SRR13861235 | HR-TB | lineage4.9 | None | SRR13861146 | Sensitive | lineage4.9 | None | SRR13861224 | Sensitive | lineage4.9 | None | SRR13837514 | Sensitive | lineage4.9 | None | SRR13861168 | RR-TB | lineage4.9 | None | SRR13861322 | Other | lineage4.9 | None | SRR13861305 | Other | lineage4.9 | None | SRR13861368 | RR-TB | lineage4.9 | None | SRR16157123 | Other | lineage4.9 | None | SRR13861381 | MDR-TB | lineage4.9 | None | SRR13861528 | HR-TB | lineage4.9 | None | SRR13861534 | Other | lineage4.9 | None | SRR13861611 | Sensitive | lineage4.9 | None | SRR13861386 | HR-TB | lineage4.9 | None | SRR13861400 | Other | lineage4.9 | None | SRR13861500 | RR-TB | lineage4.9 | None | SRR13861556 | Other | lineage4.9 | None | SRR13861663 | Sensitive | lineage4.9 | None | SRR20970043 | MDR-TB | lineage2.2.1 | None | SRR19295647 | Sensitive | lineage4.9 | None | SRR19324818 | Sensitive | lineage1.1.1.1 | None | SRR1640750 | HR-TB | None | SRR1791696 | Other | La1.8.1 | None | SRR12708416 | Sensitive | lineage4.1 | None | SRR5709967 | MDR-TB | lineage2.2.1 | None | SRR26937107 | MDR-TB | lineage2.2.1 | None | SRR3675464 | HR-TB | lineage4.1 | None | SRR3675473 | Sensitive | lineage4.9 | None | SRR3675472 | Sensitive | lineage4.9 | None | SRR6325445 | HR-TB | None | ERR1035239 | HR-TB | None | SRR3675486 | HR-TB | None | SRR3675482 | HR-TB | None | ERR161033 | HR-TB | None | ERR161034 | Other | lineage4.3.4.2.1 | None | SRR3675247 | Other | lineage4.9 | None | SRR3675209 | Sensitive | lineage4.9 | None | SRR3675229 | Other | lineage4 | None | ERR4815489 | Sensitive | lineage4.9 | None | ERR4814536 | MDR-TB | lineage3;lineage2.1 | None | SRR3675210 | Sensitive | lineage4.9 | None | SRR3675234 | Other | None | SRR3675279 | Other | None | SRR3675265 | Other | lineage4 | None | SRR3675318 | Other | lineage4.9 | None | ERR176643 | HR-TB | None | SRR3675292 | Sensitive | lineage4 | None | SRR3675387 | Sensitive | None | SRR3675383 | HR-TB | None | SRR3675514 | Sensitive | lineage4.9 | None | ERR176751 | HR-TB | None | SRR3675510 | Other | None | SRR3675455 | Sensitive | lineage4 | None | SRR3675537 | Sensitive | lineage4.9 | None | SRR3675522 | Other | None | SRR3675527 | RR-TB | lineage4.9 | None | SRR3675545 | HR-TB | None | SRR3675541 | Sensitive | lineage4.9 | None | SRR3675570 | Sensitive | lineage4.9 | None | SRR5341422 | HR-TB | lineage2.1 | None | SRR3675558 | HR-TB | None | ERR212001 | HR-TB | None | SRR3675571 | HR-TB | None | ERR212121 | HR-TB | None | ERR4816551 | HR-TB | lineage4.1.1.3 | None | ERR4817692 | HR-TB | lineage4;lineage1.1.2 | None | ERR2509673 | Other | lineage2.2.1 | None | ERR163965 | Sensitive | lineage4.3.4.2.1 | mw | ERR3275196 | Other | lineage2.2.1 | nl | ERR2512770 | Other | lineage4.2.1 | None | ERR2513283 | Other | lineage5.1.4 | None | SRR5341400 | HR-TB | lineage4 | None | SRR5341373 | HR-TB | lineage4 | None | SRR5341412 | Pre-XDR-TB | lineage3 | None | ERR4819322 | Other | lineage4;lineage1.1 | None | SRR5341432 | HR-TB | lineage4 | None | SRR5341313 | HR-TB | None | SRR5341293 | HR-TB | lineage4 | None | SRR5341437 | Sensitive | lineage4.9 | None | SAMN02414850 | Other | lineage4.1.2.1 | None | ERR2514552 | Sensitive | lineage3 | None | SRR5341341 | Pre-XDR-TB | lineage2.2.1 | None | SRR5341315 | Sensitive | None | ERR2446563 | Other | lineage2.2.1 | nl | ERR2693231 | Other | None | SRR6045706 | Sensitive | lineage4 | None | ERR4821053 | Other | lineage3 | None | SRR6045503 | HR-TB | None | ERR2693239 | HR-TB | None | ERR2693257 | Other | None | ERR278594 | HR-TB | None | SRR6044819 | Sensitive | lineage4.9 | None | SRR6046046 | Other | None | SRR6045952 | HR-TB | None | SRR6325444 | HR-TB | None | SRR6045371 | Sensitive | lineage4.2.1 | None | SRR6046245 | Other | lineage4.9 | None | ERR2517528 | Other | lineage3 | nl |
---|