Rv1221 - c.564T>C
Note: the variant has been searched for in a non-representative convenience
dataset of samples from the ENA. This sampleset may contain overrepresentation
in certain categories such as geographic source, drug resistance type and
lineage. Interpretation of variant frequencies should be performed cautiously
with this in mind.
Drug resistance types
40 Sensitive
6 RR-TB
44 HR-TB
13 MDR-TB
0 Pre-XDR-TB
2 XDR-TB
43 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage4.9 | 57 |
| La3;lineage4.9 | 8 |
| lineage3 | 1 |
| lineage4.3.4.2 | 1 |
| La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 | 4 |
| lineage1.1.1 | 1 |
| lineage2.2.1.1 | 5 |
| lineage4.3.2.1 | 1 |
| lineage2.2.1 | 9 |
| M.canetti;lineage2.1 | 1 |
| lineage4.2;lineage4.9 | 3 |
| 6 | |
| lineage4.9;lineage6.3 | 3 |
| lineage4.9;lineage7 | 3 |
| lineage4.3.2;lineage4.9 | 1 |
| La1.7;M.canetti;lineage4.9 | 3 |
| lineage2.1;lineage4.9;lineage7 | 1 |
| M.canetti;lineage2.2 | 2 |
| lineage4.9;lineage6.1.3 | 1 |
| La1.6;La3;M.canetti;lineage4.6.4;lineage4.9 | 1 |
| La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.9 | 1 |
| La1.7.X-unk4;lineage4.9 | 1 |
| La1.8.1 | 1 |
| lineage3.1.2.2 | 1 |
| La1.7.1;La1.7.X-unk4 | 1 |
| lineage4.2;lineage4.8.1;lineage4.9 | 2 |
| M.canetti;lineage2.1;lineage4.9;lineage6.3 | 1 |
| La2;lineage4.9;lineage9 | 1 |
| M.canetti;lineage2.1;lineage6.3 | 1 |
| lineage1.1.3.1 | 1 |
| La1.7.1 | 2 |
| La1.7;lineage4.9 | 3 |
| lineage2.1;lineage4.9 | 1 |
| La1.6;La3;lineage4.6.4;lineage4.9 | 1 |
| La2;lineage4.9 | 2 |
| lineage4.3.4.2.1 | 1 |
| La1.6;La3;M.canetti;lineage2.1;lineage4.9 | 1 |
| La1.6;M.canetti;lineage4.8.1;lineage4.9;lineage6.3 | 1 |
| lineage4 | 1 |
| La1.7.1;lineage4.9 | 1 |
| lineage4.1.2 | 1 |
| La1.7;lineage4.9;lineage7 | 1 |
| La1.7;lineage4.2 | 1 |
| M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 | 1 |
| La3;lineage2.1;lineage4.9;lineage6.3 | 1 |
| M.canetti;lineage4.2;lineage4.6.4;lineage4.8.1;lineage4.9;lineage6.2.3 | 1 |
| M.canetti;lineage4.2;lineage4.9 | 1 |
| La1.6;La3;M.canetti;lineage4.8.1;lineage4.9 | 1 |
| La3;lineage4 | 1 |
| La2;lineage2.2 | 1 |
| M.canetti;lineage4.9 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 148 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | ERR926160 | Sensitive | lineage4.9 | None | ERR502510 | Sensitive | lineage4.9 | None | ERR3283030 | HR-TB | lineage4.9 | None | ERR3283031 | Sensitive | La3;lineage4.9 | None | ERR926158 | Sensitive | lineage4.9 | None | ERR4797184 | Sensitive | lineage4.9 | None | ERR4798504 | RR-TB | lineage3 | None | ERR3283011 | Other | La3;lineage4.9 | None | ERR9634265 | Sensitive | lineage4.3.4.2 | None | ERR2693230 | HR-TB | La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 | None | SRR5341453 | Other | lineage4.9 | None | SRR14066533 | Sensitive | lineage1.1.1 | None | ERR971389 | Sensitive | lineage4.9 | None | ERR1035122 | Sensitive | lineage4.9 | None | SRR1181091 | Other | lineage2.2.1.1 | None | SRR9970981 | RR-TB | lineage4.3.2.1 | None | SRR6046382 | Sensitive | lineage2.2.1 | None | ERR1063849 | HR-TB | lineage4.9 | None | SRR1183144 | Other | lineage2.2.1 | None | ERR3283057 | Sensitive | La3;lineage4.9 | None | ERR3283018 | HR-TB | lineage4.9 | None | ERR323041 | HR-TB | M.canetti;lineage2.1 | None | SRR5341456 | Other | lineage4.9 | None | SRR6046026 | RR-TB | lineage4.2;lineage4.9 | None | ERR9786843 | Other | None | ERR4811296 | MDR-TB | lineage2.2.1.1 | cn | SRR28119756 | Other | lineage4.9;lineage6.3 | None | SRR3675539 | HR-TB | lineage4.9;lineage7 | None | ERR4797474 | Sensitive | lineage4.9 | None | ERR736865 | HR-TB | lineage4.3.2;lineage4.9 | None | ERR736835 | HR-TB | La1.7;M.canetti;lineage4.9 | None | ERR926165 | Sensitive | lineage4.9 | None | SRR3675555 | HR-TB | lineage2.1;lineage4.9;lineage7 | None | SRR1640750 | Other | None | ERR4831545 | XDR-TB | M.canetti;lineage2.2 | None | ERR502524 | HR-TB | lineage4.9;lineage6.3 | None | ERR1063858 | HR-TB | lineage4.9 | None | ERR926155 | Sensitive | lineage4.9 | None | ERR3445504 | Other | lineage4.9;lineage6.1.3 | None | ERR3283040 | HR-TB | lineage4.9 | None | ERR3283024 | Other | La1.6;La3;M.canetti;lineage4.6.4;lineage4.9 | None | SRR28119717 | Other | lineage4.9;lineage6.3 | None | ERR387051 | Other | lineage4.9 | None | ERR3797044 | Other | La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.9 | None | ERR502511 | Sensitive | lineage4.9 | None | SRR3675520 | Other | La1.7.X-unk4;lineage4.9 | None | SRR1791747 | Other | La1.8.1 | None | ERR702405 | Sensitive | lineage4.9 | None | ERR926162 | Sensitive | lineage4.9 | None | SRR5341384 | HR-TB | lineage4.9 | None | ERR3797015 | HR-TB | lineage4.9 | None | ERR4769521 | RR-TB | lineage4.9 | None | SRR16156817 | Other | lineage4.9 | None | SRR14801749 | HR-TB | lineage4.9 | None | ERR3797063 | Sensitive | La3;lineage4.9 | None | ERR13265833 | Other | lineage4.9 | None | ERR4810741 | HR-TB | None | ERR4798648 | MDR-TB | lineage3.1.2.2 | None | ERR3445503 | Other | La1.7.1;La1.7.X-unk4 | None | ERR294266 | HR-TB | lineage4.2;lineage4.8.1;lineage4.9 | None | ERR4811311 | Other | None | ERR926161 | Sensitive | lineage4.9 | None | SRR3675481 | MDR-TB | M.canetti;lineage2.1;lineage4.9;lineage6.3 | None | ERR1063862 | HR-TB | lineage4.9 | None | ERR3283021 | HR-TB | lineage4.9 | None | ERR323053 | MDR-TB | La2;lineage4.9;lineage9 | None | ERR926159 | Sensitive | lineage4.9 | None | ERR212138 | HR-TB | lineage4.9 | None | SRR6325444 | MDR-TB | M.canetti;lineage2.1;lineage6.3 | None | ERR3797064 | Other | La3;lineage4.9 | None | ERR8479578 | Sensitive | lineage1.1.3.1 | None | ERR3797047 | MDR-TB | lineage4.9 | None | SRR7240492 | HR-TB | La1.7.1 | None | SRR28119811 | Other | lineage2.2.1 | None | SRR6785375 | Sensitive | lineage2.2.1 | None | SRR9971112 | Other | lineage2.2.1 | None | SRR3675585 | Sensitive | lineage4.9 | None | SRR29017081 | Sensitive | lineage4.9 | None | SRR6045887 | Other | La1.7;M.canetti;lineage4.9 | None | ERR3797014 | Other | La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 | None | ERR3283025 | MDR-TB | La1.7;lineage4.9 | None | SRR28119805 | Other | lineage4.9 | None | ERR234659 | Other | None | ERR7911670 | XDR-TB | M.canetti;lineage2.2 | None | SRR6785423 | Sensitive | lineage2.2.1 | None | ERR3283042 | Other | lineage4.9 | None | ERR9119669 | HR-TB | lineage4.9 | None | ERR3797017 | HR-TB | La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 | None | ERR3797048 | Other | La3;lineage4.9 | None | SRR3675495 | Other | lineage2.1;lineage4.9 | None | SRR3675231 | MDR-TB | lineage4.9;lineage7 | None | ERR2693231 | Other | La1.6;La3;lineage4.6.4;lineage4.9 | None | ERR1063857 | MDR-TB | La2;lineage4.9 | None | ERR3283014 | Sensitive | La3;lineage4.9 | None | ERR11465628 | Sensitive | lineage4.3.4.2.1 | None | SRR6046783 | Other | La1.7;M.canetti;lineage4.9 | None | ERR4810624 | HR-TB | lineage2.2.1 | None | ERR4769474 | HR-TB | lineage4.9 | None | ERR124636 | Sensitive | lineage4.9 | None | ERR6358991 | HR-TB | None | ERR3283047 | Sensitive | La3;lineage4.9 | None | SRR29096174 | Sensitive | La1.7;lineage4.9 | None | SRR28119753 | Other | lineage4.9 | None | ERR1063846 | HR-TB | lineage4.9 | None | ERR3283020 | HR-TB | La1.6;La3;M.canetti;lineage2.1;lineage4.9 | None | SRR6046644 | HR-TB | La1.6;M.canetti;lineage4.8.1;lineage4.9;lineage6.3 | None | SRR6511621 | Sensitive | lineage4.9 | None | SRR29096527 | Sensitive | lineage4.9 | None | SRR6044942 | HR-TB | lineage4.9 | None | ERR3273109 | HR-TB | lineage4 | None | ERR926163 | Other | lineage4.9 | None | ERR1063859 | HR-TB | La1.7.1;lineage4.9 | None | SRR1792478 | HR-TB | La1.7.1 | None | ERR926154 | Sensitive | lineage4.9 | None | SRR12416842 | HR-TB | lineage4.9 | None | ERR926164 | Other | lineage4.9 | None | SRR1180172 | Other | lineage2.2.1 | None | SRR9970980 | Other | lineage4.1.2 | None | SRR3675456 | RR-TB | lineage4.9;lineage7 | None | SRR26937107 | MDR-TB | lineage2.2.1 | None | ERR1034634 | HR-TB | lineage4.9 | None | SRR6045785 | MDR-TB | lineage4.2;lineage4.8.1;lineage4.9 | None | ERR5311094 | HR-TB | lineage4.9 | None | SRR5341422 | HR-TB | La1.7;lineage4.9;lineage7 | None | SRR23961559 | Other | La1.7;lineage4.2 | None | SRR1180147 | Other | lineage2.2.1.1 | None | SRR1183106 | RR-TB | lineage2.2.1.1 | None | ERR4797264 | Sensitive | lineage4.9 | None | SRR6046295 | HR-TB | lineage4.2;lineage4.9 | None | ERR926156 | Sensitive | lineage4.9 | None | SRR19295647 | Sensitive | lineage4.9 | None | SRR6046397 | Other | M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 | None | ERR2693252 | Sensitive | lineage4.9 | None | ERR323062 | Sensitive | lineage4.9 | None | ERR4828872 | Sensitive | lineage4.2;lineage4.9 | None | ERR926157 | Sensitive | lineage4.9 | None | SRR19304036 | Other | La3;lineage2.1;lineage4.9;lineage6.3 | None | ERR11252599 | Other | M.canetti;lineage4.2;lineage4.6.4;lineage4.8.1;lineage4.9;lineage6.2.3 | None | SRR3675571 | HR-TB | M.canetti;lineage4.2;lineage4.9 | None | SRR25206951 | MDR-TB | lineage2.2.1.1 | None | ERR2693257 | Other | La1.6;La3;M.canetti;lineage4.8.1;lineage4.9 | None | ERR3283028 | Other | La3;lineage4 | None | ERR1063839 | MDR-TB | La2;lineage2.2 | None | ERR2693245 | HR-TB | La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 | None | ERR4188247 | HR-TB | lineage4.9 | None | ERR323039 | HR-TB | La2;lineage4.9 | None | ERR3797028 | HR-TB | M.canetti;lineage4.9 | None | SRR14801759 | HR-TB | La1.7;lineage4.9 | None |
|---|
