Rv0676c - c.2616T>C
Note: the variant has been searched for in a non-representative convenience
dataset of samples from the ENA. This sampleset may contain overrepresentation
in certain categories such as geographic source, drug resistance type and
lineage. Interpretation of variant frequencies should be performed cautiously
with this in mind.
Drug resistance types
33 Sensitive
1 RR-TB
27 HR-TB
2 MDR-TB
2 Pre-XDR-TB
0 XDR-TB
31 Other
lineage Counts
| lineage | Count |
|---|---|
| La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 | 3 |
| lineage4.9 | 47 |
| La1.8.1 | 3 |
| M.canetti;lineage4.9 | 1 |
| lineage3 | 1 |
| La3;lineage4.9 | 4 |
| lineage2.2.1 | 7 |
| La1.6;M.canetti;lineage4.8.1;lineage4.9;lineage6.3 | 1 |
| La1;lineage4.9 | 1 |
| La1.7.1 | 1 |
| La1.7.1;La1.7.X-unk4;lineage7 | 1 |
| lineage4.9;lineage7 | 1 |
| La1.6;La3;lineage4.6.4;lineage4.8.1;lineage4.9 | 1 |
| lineage4.8;lineage4.9 | 2 |
| La1.6;La3;M.canetti;lineage4.6.4;lineage4.9 | 1 |
| 1 | |
| La1.7;lineage4.9 | 4 |
| lineage1.1.2 | 1 |
| La1.6;La3;M.canetti;lineage2.1;lineage4.9 | 1 |
| lineage4.3.4.2 | 1 |
| lineage4 | 1 |
| lineage6.1.3 | 1 |
| lineage1.1.3.1 | 1 |
| lineage4.1.2 | 2 |
| lineage4.8 | 1 |
| lineage4.3.2.1 | 1 |
| lineage4.3.4 | 1 |
| lineage4.6.3;lineage4.9 | 1 |
| La1.6;La3;lineage4.6.4;lineage4.9 | 1 |
| La1.6;lineage4 | 1 |
| lineage2.2;lineage4 | 1 |
| La1.7;lineage4.9;lineage6 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 96 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | ERR3797017 | HR-TB | La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 | None | ERR4188247 | HR-TB | lineage4.9 | None | SRR1791747 | Other | La1.8.1 | None | ERR3797028 | HR-TB | M.canetti;lineage4.9 | None | ERR736848 | Other | lineage4.9 | None | SRR29097004 | Other | lineage3 | None | ERR3283031 | Sensitive | La3;lineage4.9 | None | ERR3283014 | Sensitive | La3;lineage4.9 | None | SRR5341366 | Sensitive | lineage4.9 | None | ERR4810624 | HR-TB | lineage2.2.1 | None | SRR6046644 | HR-TB | La1.6;M.canetti;lineage4.8.1;lineage4.9;lineage6.3 | None | SRR10808805 | Other | La1;lineage4.9 | None | ERR751326 | Other | lineage4.9 | None | SRR1792478 | HR-TB | La1.7.1 | None | ERR3797073 | Other | La1.8.1 | None | ERR3797064 | Other | La3;lineage4.9 | None | ERR1035122 | Sensitive | lineage4.9 | None | SRR12416842 | HR-TB | lineage4.9 | None | ERR6866639 | Other | lineage4.9 | None | ERR3797047 | MDR-TB | lineage4.9 | None | SRR3675246 | Other | lineage4.9 | None | ERR3445501 | HR-TB | La1.7.1;La1.7.X-unk4;lineage7 | None | SRR9971112 | Other | lineage2.2.1 | None | ERR4831117 | HR-TB | lineage4.9;lineage7 | None | ERR736834 | Sensitive | lineage4.9 | None | SRR3675234 | Other | La1.6;La3;lineage4.6.4;lineage4.8.1;lineage4.9 | None | ERR4796929 | Sensitive | lineage4.9 | None | ERR4797474 | Sensitive | lineage4.9 | None | ERR6866022 | Other | lineage4.8;lineage4.9 | None | ERR736875 | HR-TB | lineage4.9 | None | ERR926165 | Sensitive | lineage4.9 | None | SRR6045795 | Sensitive | lineage2.2.1 | None | ERR4796254 | Sensitive | lineage4.9 | None | ERR736872 | HR-TB | lineage4.9 | None | ERR3283024 | Other | La1.6;La3;M.canetti;lineage4.6.4;lineage4.9 | None | ERR1063896 | Sensitive | None | SRR1159378 | Other | lineage4.9 | None | ERR323108 | HR-TB | La1.7;lineage4.9 | None | SRR5341341 | Pre-XDR-TB | lineage2.2.1 | None | ERR13264981 | Sensitive | La1.7;lineage4.9 | None | SRR5341384 | HR-TB | lineage4.9 | None | ERR216938 | HR-TB | La1.7;lineage4.9 | None | ERR4797193 | HR-TB | lineage1.1.2 | None | ERR4799478 | Pre-XDR-TB | lineage2.2.1 | None | ERR3283020 | HR-TB | La1.6;La3;M.canetti;lineage2.1;lineage4.9 | None | SRR10315567 | Other | lineage2.2.1 | None | ERR9634265 | Sensitive | lineage4.3.4.2 | None | ERR3273109 | HR-TB | lineage4 | None | ERR2693230 | HR-TB | La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 | None | ERR9787256 | Other | lineage6.1.3 | None | ERR108471 | HR-TB | lineage4.9 | None | ERR926164 | Other | lineage4.9 | None | ERR8479578 | Sensitive | lineage1.1.3.1 | None | SRR9970978 | Sensitive | lineage4.1.2 | None | SRR9970979 | Sensitive | lineage4.8 | None | ERR473332 | Other | lineage4.9 | None | SRR9970981 | RR-TB | lineage4.3.2.1 | None | SRR9970980 | Other | lineage4.1.2 | None | SRR29096246 | Sensitive | La1.7;lineage4.9 | None | ERR323085 | Sensitive | lineage4.9 | None | SRR5341299 | HR-TB | lineage4.9 | None | ERR11252612 | Other | La3;lineage4.9 | None | ERR323062 | Sensitive | lineage4.9 | None | ERR137286 | Other | lineage4.9 | None | ERR736817 | HR-TB | lineage4.3.4 | None | SRR6046577 | Other | lineage4.6.3;lineage4.9 | None | ERR6358979 | Other | lineage4.9 | None | ERR6866410 | Sensitive | lineage4.9 | None | ERR2693231 | Other | La1.6;La3;lineage4.6.4;lineage4.9 | None | ERR4831617 | MDR-TB | lineage2.2.1 | None | ERR323107 | Sensitive | lineage4.9 | None | ERR323115 | Sensitive | lineage4.9 | None | ERR736856 | Sensitive | lineage4.9 | None | SRR10809074 | Sensitive | lineage4.9 | None | ERR1063883 | HR-TB | lineage4.9 | None | ERR4797184 | Sensitive | lineage4.9 | None | ERR124636 | Sensitive | lineage4.9 | None | ERR1063846 | HR-TB | lineage4.9 | None | SRR6511621 | Sensitive | lineage4.9 | None | ERR3283021 | HR-TB | lineage4.9 | None | ERR971389 | Sensitive | lineage4.9 | None | ERR3797014 | Other | La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 | None | ERR4024991 | Other | lineage4.8;lineage4.9 | None | SRR11662690 | HR-TB | lineage4.9 | None | SRR5341469 | HR-TB | lineage4.9 | None | ERR4811493 | HR-TB | lineage4.9 | None | ERR4797264 | Sensitive | lineage4.9 | None | SRR5341387 | Other | lineage4.9 | None | SRR19295647 | Sensitive | lineage4.9 | None | SRR28351554 | Sensitive | La1.6;lineage4 | None | SRR8692863 | Other | lineage2.2;lineage4 | None | SRR7236177 | Other | La1.8.1 | None | ERR6866547 | Other | La1.7;lineage4.9;lineage6 | None | ERR323066 | Sensitive | lineage4.9 | None | ERR3797029 | Other | lineage4.9 | None | ERR502511 | Sensitive | lineage4.9 | None |
|---|
