TB-Profiler result

Run: ERR9787256
Summary

Run ID: ERR9787256

Sample name:

Date: 02-04-2023 13:06:56

Number of reads: 1360042

Percentage reads mapped: 68.06

Strain: lineage6.1.3

Drug-resistance: Other

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Drug resistance: This table reports drug-resistance associated mutations found in known resistance genes
Drug Resistance Supporting mutations
Lineage Table: The lineage is inferred by analysing lineage specific SNPs
Lineage Family Main Spoligotype RDs Frequency
lineage6 West-Africa 2 AFRI_1 RD702 1.0
lineage6.1.3 West-Africa 2 AFRI_1 RD702 0.99
Drug resistance-Associated Mutations: This table reports mutations found in candidate resistance genes which have been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction Drugs
embC 4240781 p.Ala307Thr missense_variant 0.97 ethambutol
Non-Associated Mutations: This table reports mutations found in candidate resistance genes which have not been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction
gyrB 6446 p.Ala403Ser missense_variant 1.0
gyrA 7362 p.Glu21Gln missense_variant 1.0
gyrA 7412 c.111C>G synonymous_variant 0.16
gyrA 7433 c.132G>A synonymous_variant 0.2
gyrA 7442 c.141G>C synonymous_variant 0.21
gyrA 7457 c.156T>C synonymous_variant 0.3
gyrA 7463 c.162G>C synonymous_variant 0.29
gyrA 7472 c.171T>C synonymous_variant 0.26
gyrA 7475 c.174A>G synonymous_variant 0.27
gyrA 7480 p.Phe60Tyr missense_variant 0.3
gyrA 7484 c.183T>C synonymous_variant 0.3
gyrA 7499 c.198G>C synonymous_variant 0.27
gyrA 7526 c.225G>C synonymous_variant 0.3
gyrA 7532 c.231T>G synonymous_variant 0.29
gyrA 7541 c.240C>G synonymous_variant 0.27
gyrA 7547 c.246C>T synonymous_variant 0.26
gyrA 7565 c.264C>T synonymous_variant 0.2
gyrA 7569 p.Ala90Ser missense_variant 0.19
gyrA 7585 p.Ser95Thr missense_variant 1.0
gyrA 7592 c.291G>C synonymous_variant 0.15
gyrA 7595 c.294C>G synonymous_variant 0.16
gyrA 7607 c.306C>G synonymous_variant 0.19
gyrA 7613 c.312G>A synonymous_variant 0.16
gyrA 7622 c.321C>T synonymous_variant 0.17
gyrA 7631 c.330G>C synonymous_variant 0.16
gyrA 7637 c.336C>T synonymous_variant 0.15
gyrA 7709 c.408G>C synonymous_variant 0.14
gyrA 7728 c.427_429delAGGinsCGC synonymous_variant 0.15
gyrA 7763 c.462T>G synonymous_variant 0.14
gyrA 8294 c.993T>C synonymous_variant 0.17
gyrA 8315 c.1014G>A synonymous_variant 0.18
gyrA 8324 c.1023T>C synonymous_variant 0.17
gyrA 8327 c.1026C>G synonymous_variant 0.16
gyrA 8339 c.1038A>G synonymous_variant 0.18
gyrA 8340 p.Ala347Ser missense_variant 0.18
gyrA 8372 c.1071G>T synonymous_variant 0.13
gyrA 8393 p.Tyr364* stop_gained 0.13
gyrA 8399 c.1098T>G synonymous_variant 0.17
gyrA 8405 c.1104C>T synonymous_variant 0.17
gyrA 8408 c.1107A>G synonymous_variant 0.17
gyrA 8414 c.1113C>T synonymous_variant 0.18
gyrA 8420 c.1119T>C synonymous_variant 0.19
gyrA 8433 p.Thr378Arg missense_variant 0.19
gyrA 8442 c.1141C>T synonymous_variant 0.23
gyrA 8453 c.1152A>C synonymous_variant 0.23
gyrA 8456 c.1155C>T synonymous_variant 0.23
gyrA 8459 c.1158G>A synonymous_variant 0.25
gyrA 8462 c.1161A>G synonymous_variant 0.24
gyrA 8471 c.1170T>C synonymous_variant 0.24
gyrA 8477 c.1176C>T synonymous_variant 0.25
gyrA 8480 c.1179C>T synonymous_variant 0.27
gyrA 8486 c.1185T>C synonymous_variant 0.26
gyrA 8493 p.Leu398Phe missense_variant 0.69
gyrA 8504 c.1203G>C synonymous_variant 0.3
gyrA 8513 c.1212C>G synonymous_variant 0.27
gyrA 8516 c.1215T>C synonymous_variant 0.27
gyrA 8519 c.1218A>G synonymous_variant 0.27
gyrA 8520 c.1219C>T synonymous_variant 0.27
gyrA 8535 p.Glu412Gln missense_variant 0.26
gyrA 8546 p.Asp415Glu missense_variant 0.27
gyrA 8561 c.1260A>C synonymous_variant 0.28
gyrA 8571 c.1270C>T synonymous_variant 0.29
gyrA 8603 c.1302A>C synonymous_variant 0.18
gyrA 8619 c.1318T>C synonymous_variant 0.15
gyrA 8624 c.1323G>T synonymous_variant 0.15
gyrA 8627 c.1326C>G synonymous_variant 0.14
gyrA 8633 c.1332C>T synonymous_variant 0.14
gyrA 8636 c.1335A>C synonymous_variant 0.17
gyrA 8806 p.Asp502Gly missense_variant 0.97
gyrA 9143 c.1842T>C synonymous_variant 1.0
gyrA 9267 p.Asn656Gly missense_variant 0.17
gyrA 9275 c.1974G>A synonymous_variant 0.18
gyrA 9293 c.1992G>C synonymous_variant 0.16
gyrA 9296 c.1995T>C synonymous_variant 0.16
gyrA 9304 p.Gly668Asp missense_variant 1.0
gyrA 9323 c.2022C>G synonymous_variant 0.15
gyrA 9324 c.2023_2025delTCGinsAGC synonymous_variant 0.15
gyrA 9329 c.2028C>A synonymous_variant 0.16
gyrA 9335 c.2034G>C synonymous_variant 0.16
gyrA 9341 c.2040C>G synonymous_variant 0.16
gyrA 9345 c.2044_2046delAGGinsCGC synonymous_variant 0.16
gyrA 9353 c.2052G>C synonymous_variant 0.18
gyrA 9356 c.2055G>A synonymous_variant 0.18
gyrA 9374 c.2073G>T synonymous_variant 0.17
gyrA 9377 c.2076A>G synonymous_variant 0.17
gyrA 9383 c.2082T>C synonymous_variant 0.18
gyrA 9386 c.2085T>G synonymous_variant 0.18
gyrA 9407 c.2106C>T synonymous_variant 0.14
fgd1 491668 p.Lys296Glu missense_variant 1.0
fgd1 491742 c.960T>C synonymous_variant 1.0
mshA 575734 c.387T>G synonymous_variant 0.14
mshA 575744 p.Ala133Thr missense_variant 0.15
mshA 575749 c.402C>A synonymous_variant 0.18
mshA 575764 c.417C>G synonymous_variant 0.17
mshA 575771 p.Val142Thr missense_variant 0.16
mshA 575776 c.429C>T synonymous_variant 0.16
mshA 575782 c.435G>C synonymous_variant 0.15
mshA 575785 c.438T>C synonymous_variant 0.14
mshA 575795 p.Ile150Val missense_variant 0.15
mshA 575800 c.453G>C synonymous_variant 0.15
mshA 575803 c.456C>T synonymous_variant 0.16
mshA 575821 c.474G>C synonymous_variant 0.18
mshA 575842 c.495G>C synonymous_variant 0.2
mshA 575864 c.517T>C synonymous_variant 0.18
rpoB 760136 c.330G>A synonymous_variant 0.15
rpoB 760139 c.333A>T synonymous_variant 0.15
rpoB 760142 c.336C>G synonymous_variant 0.16
rpoB 760181 c.375T>C synonymous_variant 0.22
rpoB 760184 c.378A>G synonymous_variant 0.22
rpoB 760196 c.390C>G synonymous_variant 0.23
rpoB 760235 c.429T>C synonymous_variant 0.29
rpoB 760244 c.438G>C synonymous_variant 0.27
rpoB 760283 c.477G>C synonymous_variant 0.36
rpoB 760298 c.492G>C synonymous_variant 0.32
rpoB 760310 c.504G>C synonymous_variant 0.33
rpoB 760316 c.510C>G synonymous_variant 0.35
rpoB 760325 c.519G>C synonymous_variant 0.34
rpoB 760331 c.525G>C synonymous_variant 0.33
rpoB 760334 c.528G>T synonymous_variant 0.34
rpoB 760340 c.534G>T synonymous_variant 0.35
rpoB 760357 p.Thr184Ser missense_variant 0.29
rpoB 760361 c.555T>C synonymous_variant 0.28
rpoB 760376 p.Asp190Glu missense_variant 0.33
rpoB 760406 c.600G>C synonymous_variant 0.3
rpoB 760407 p.Ser201Gly missense_variant 0.3
rpoB 760415 c.609C>T synonymous_variant 0.3
rpoB 760424 c.618C>G synonymous_variant 0.31
rpoB 760430 c.624T>C synonymous_variant 0.28
rpoB 760457 c.651C>T synonymous_variant 0.32
rpoB 760463 c.657C>T synonymous_variant 0.31
rpoB 760475 c.669A>G synonymous_variant 0.28
rpoB 760478 c.672C>T synonymous_variant 0.28
rpoB 760481 c.675G>T synonymous_variant 0.28
rpoB 760484 c.678A>G synonymous_variant 0.27
rpoB 760502 c.696C>G synonymous_variant 0.25
rpoB 760522 p.Ser239Asn missense_variant 0.21
rpoB 760532 c.726T>C synonymous_variant 0.2
rpoB 760533 p.Val243Thr missense_variant 0.17
rpoB 760541 c.735G>C synonymous_variant 0.17
rpoB 760547 c.741G>C synonymous_variant 0.17
rpoB 760561 c.757_758delCG frameshift_variant 0.17
rpoB 760567 p.Ser254Trp missense_variant 0.16
rpoB 760568 c.762_763insGC frameshift_variant 0.16
rpoB 760571 c.765G>C synonymous_variant 0.15
rpoB 760585 p.Asn260Ser missense_variant 0.2
rpoB 760591 p.Val262Ala missense_variant 0.19
rpoB 760595 c.789C>T synonymous_variant 0.19
rpoB 760596 p.Thr264Pro missense_variant 0.19
rpoB 760611 c.805T>C synonymous_variant 0.2
rpoB 760646 c.840C>G synonymous_variant 0.19
rpoB 760655 c.849A>G synonymous_variant 0.18
rpoB 760661 c.855A>C synonymous_variant 0.18
rpoB 760670 c.864G>C synonymous_variant 0.18
rpoB 760674 c.868T>C synonymous_variant 0.19
rpoB 760679 c.873A>G synonymous_variant 0.19
rpoB 760683 c.877T>C synonymous_variant 0.19
rpoB 760721 c.915C>G synonymous_variant 0.17
rpoB 760724 c.918T>C synonymous_variant 0.17
rpoB 760730 c.924T>C synonymous_variant 0.15
rpoB 760748 c.942C>G synonymous_variant 0.15
rpoB 760751 c.945G>C synonymous_variant 0.15
rpoB 760755 p.His317Asn missense_variant 0.15
rpoB 760759 p.Val318Ala missense_variant 0.15
rpoB 760764 p.Glu320Gln missense_variant 0.17
rpoB 760769 c.963C>G synonymous_variant 0.18
rpoB 760784 c.978G>T synonymous_variant 0.15
rpoB 760805 c.999G>C synonymous_variant 0.18
rpoB 760817 c.1011A>G synonymous_variant 0.22
rpoB 760820 c.1014T>C synonymous_variant 0.24
rpoB 760826 c.1020C>G synonymous_variant 0.24
rpoB 760830 c.1024T>C synonymous_variant 0.25
rpoB 760841 c.1035T>C synonymous_variant 0.29
rpoB 760855 p.Thr350Ile missense_variant 0.73
rpoB 760859 c.1053T>C synonymous_variant 0.25
rpoB 760862 c.1056G>C synonymous_variant 0.25
rpoB 760877 c.1071G>C synonymous_variant 0.22
rpoB 760883 c.1077G>C synonymous_variant 0.2
rpoB 760886 c.1080A>G synonymous_variant 0.2
rpoB 760887 p.Thr361Val missense_variant 0.2
rpoB 760910 c.1104C>T synonymous_variant 0.25
rpoB 760916 c.1110C>T synonymous_variant 0.24
rpoB 760919 c.1113C>T synonymous_variant 0.25
rpoB 760925 c.1119T>C synonymous_variant 0.24
rpoB 760928 c.1122G>C synonymous_variant 0.21
rpoB 760931 c.1125C>G synonymous_variant 0.24
rpoB 760946 c.1140A>G synonymous_variant 0.23
rpoB 760958 c.1152G>C synonymous_variant 0.24
rpoB 760965 p.Met387Leu missense_variant 0.24
rpoB 760969 p.Ser388Phe missense_variant 0.78
rpoB 760973 c.1167G>C synonymous_variant 0.19
rpoB 760982 c.1176G>C synonymous_variant 0.15
rpoB 760985 c.1179G>C synonymous_variant 0.15
rpoB 760988 c.1182C>G synonymous_variant 0.17
rpoB 760991 c.1185G>T synonymous_variant 0.17
rpoB 760997 c.1191G>C synonymous_variant 0.19
rpoB 761015 c.1209G>C synonymous_variant 0.17
rpoB 761027 c.1221A>C synonymous_variant 0.17
rpoB 761234 c.1428G>C synonymous_variant 0.15
rpoB 761282 c.1476C>T synonymous_variant 0.16
rpoB 761288 c.1482G>T synonymous_variant 0.17
rpoB 761318 c.1512G>T synonymous_variant 0.19
rpoB 761327 c.1521A>G synonymous_variant 0.2
rpoB 761330 c.1524G>C synonymous_variant 0.19
rpoB 761345 c.1539G>C synonymous_variant 0.2
rpoB 761354 c.1548C>T synonymous_variant 0.2
rpoB 761360 c.1554T>C synonymous_variant 0.17
rpoB 761362 p.Ser519Thr missense_variant 0.16
rpoB 761367 p.Glu521Gln missense_variant 0.15
rpoB 761374 p.Val523Asp missense_variant 0.16
rpoB 761570 c.1764T>C synonymous_variant 0.18
rpoB 761573 c.1767C>G synonymous_variant 0.17
rpoB 761579 c.1773G>C synonymous_variant 0.19
rpoB 761600 c.1794T>C synonymous_variant 0.23
rpoB 761606 c.1800C>G synonymous_variant 0.23
rpoB 761612 c.1806G>T synonymous_variant 0.2
rpoB 761615 c.1809A>C synonymous_variant 0.21
rpoB 761636 c.1830G>T synonymous_variant 0.2
rpoB 761645 c.1839C>G synonymous_variant 0.19
rpoB 761648 c.1842T>C synonymous_variant 0.19
rpoB 761666 c.1860G>C synonymous_variant 0.24
rpoB 761669 c.1863C>T synonymous_variant 0.27
rpoB 761675 c.1869G>T synonymous_variant 0.29
rpoB 761690 c.1884G>C synonymous_variant 0.3
rpoB 761708 c.1902C>T synonymous_variant 0.29
rpoB 761712 p.Val636Ile missense_variant 0.28
rpoB 761722 p.Glu639Gly missense_variant 0.26
rpoB 761727 p.Ser641Gly missense_variant 0.3
rpoB 761736 p.Ile644Val missense_variant 0.27
rpoB 761747 c.1941G>C synonymous_variant 0.27
rpoB 761765 c.1959T>C synonymous_variant 0.17
rpoB 761772 p.His656Ala missense_variant 0.16
rpoB 761778 p.Asn658Asp missense_variant 0.16
rpoB 761785 p.Thr660Ser missense_variant 0.15
rpoB 761791 p.Arg662His missense_variant 0.15
rpoB 762008 c.2202C>T synonymous_variant 0.22
rpoB 762014 c.2208C>T synonymous_variant 0.26
rpoB 762047 c.2241G>A synonymous_variant 0.28
rpoB 762053 c.2247T>C synonymous_variant 0.29
rpoB 762062 c.2256T>C synonymous_variant 0.3
rpoB 762065 c.2259T>C synonymous_variant 0.3
rpoB 762083 c.2277T>C synonymous_variant 0.27
rpoB 762086 c.2280G>C synonymous_variant 0.27
rpoB 762101 c.2295C>G synonymous_variant 0.31
rpoB 762114 p.Ile770Val missense_variant 0.3
rpoB 762131 c.2325C>G synonymous_variant 0.31
rpoB 762137 c.2331C>T synonymous_variant 0.3
rpoB 762140 c.2334G>C synonymous_variant 0.29
rpoB 762143 c.2337T>C synonymous_variant 0.28
rpoB 762149 c.2343G>C synonymous_variant 0.27
rpoB 762158 c.2352G>T synonymous_variant 0.27
rpoB 762167 c.2361T>C synonymous_variant 0.26
rpoB 762176 c.2370T>C synonymous_variant 0.25
rpoB 762185 c.2379G>C synonymous_variant 0.24
rpoB 762233 c.2427G>C synonymous_variant 0.25
rpoB 762245 c.2439G>C synonymous_variant 0.26
rpoB 762284 c.2478G>T synonymous_variant 0.3
rpoB 762293 c.2487T>C synonymous_variant 0.27
rpoB 762308 c.2502G>C synonymous_variant 0.26
rpoB 762317 c.2511A>G synonymous_variant 0.28
rpoB 762329 c.2523G>C synonymous_variant 0.27
rpoB 762338 c.2532T>C synonymous_variant 0.31
rpoB 762341 c.2535G>C synonymous_variant 0.3
rpoB 762347 c.2541T>C synonymous_variant 0.34
rpoB 762350 c.2544C>T synonymous_variant 0.32
rpoB 762362 p.Glu852Asp missense_variant 0.31
rpoB 762369 c.2563T>C synonymous_variant 0.31
rpoC 762374 c.-996G>C upstream_gene_variant 0.31
rpoC 762395 c.-975G>C upstream_gene_variant 0.32
rpoC 762398 c.-972T>C upstream_gene_variant 0.33
rpoC 762401 c.-969G>C upstream_gene_variant 0.32
rpoC 762404 c.-966T>C upstream_gene_variant 0.32
rpoC 762410 c.-960T>C upstream_gene_variant 0.34
rpoC 762416 c.-954A>G upstream_gene_variant 0.33
rpoC 762434 c.-936T>C upstream_gene_variant 0.28
rpoC 762443 c.-927G>C upstream_gene_variant 0.28
rpoC 762449 c.-921C>A upstream_gene_variant 0.27
rpoC 762452 c.-918G>C upstream_gene_variant 0.27
rpoC 762470 c.-900G>C upstream_gene_variant 0.27
rpoC 762491 c.-879T>C upstream_gene_variant 0.26
rpoC 762509 c.-861T>G upstream_gene_variant 0.21
rpoB 762510 p.Ala902Pro missense_variant 0.2
rpoC 762515 c.-855C>T upstream_gene_variant 0.2
rpoC 762857 c.-513C>G upstream_gene_variant 0.2
rpoC 762863 c.-507T>C upstream_gene_variant 0.22
rpoB 762879 p.Met1025Leu missense_variant 0.26
rpoC 762920 c.-450C>T upstream_gene_variant 0.29
rpoC 762929 c.-441G>C upstream_gene_variant 0.28
rpoC 762959 c.-411G>C upstream_gene_variant 0.36
rpoC 762962 c.-408C>T upstream_gene_variant 0.36
rpoC 762995 c.-375G>T upstream_gene_variant 0.3
rpoC 763004 c.-366G>A upstream_gene_variant 0.27
rpoC 763007 c.-363C>T upstream_gene_variant 0.27
rpoC 763028 c.-342T>C upstream_gene_variant 0.31
rpoC 763031 c.-339T>G upstream_gene_variant 1.0
rpoC 763053 c.-317T>C upstream_gene_variant 0.27
rpoC 763070 c.-300T>C upstream_gene_variant 0.24
rpoC 763085 c.-285C>G upstream_gene_variant 0.24
rpoC 763103 c.-267G>C upstream_gene_variant 0.23
rpoC 763115 c.-255T>C upstream_gene_variant 0.19
rpoC 763127 c.-243G>C upstream_gene_variant 0.14
rpoC 763130 c.-240G>A upstream_gene_variant 0.14
rpoC 763133 c.-237G>C upstream_gene_variant 0.14
rpoC 763136 c.-234C>T upstream_gene_variant 0.14
rpoC 763160 c.-210G>T upstream_gene_variant 0.14
rpoC 763166 c.-204A>G upstream_gene_variant 0.17
rpoC 763169 c.-201A>G upstream_gene_variant 0.17
rpoC 763190 c.-180C>T upstream_gene_variant 0.18
rpoC 763423 p.Glu18Asp missense_variant 0.15
rpoC 763430 c.61_63delAGGinsCGT synonymous_variant 0.16
rpoC 763433 p.Gln22Asn missense_variant 0.16
rpoC 763443 p.Tyr25Phe missense_variant 0.15
rpoC 763456 c.87A>G synonymous_variant 0.16
rpoC 763528 c.159G>A synonymous_variant 0.21
rpoC 763546 c.177A>G synonymous_variant 0.18
rpoC 763558 c.189C>T synonymous_variant 0.19
rpoC 763570 c.201G>C synonymous_variant 0.22
rpoC 763573 c.204G>C synonymous_variant 0.23
rpoC 763594 c.225C>T synonymous_variant 0.21
rpoC 763603 c.234C>T synonymous_variant 0.21
rpoC 763615 c.246G>C synonymous_variant 0.2
rpoC 763618 c.249C>T synonymous_variant 0.21
rpoC 763633 c.264T>C synonymous_variant 0.22
rpoC 763660 c.291T>G synonymous_variant 0.21
rpoC 763666 c.297G>A synonymous_variant 0.22
rpoC 763675 c.306C>G synonymous_variant 0.19
rpoC 763702 c.333C>G synonymous_variant 0.27
rpoC 763709 c.340C>T synonymous_variant 0.25
rpoC 763714 c.345G>C synonymous_variant 0.25
rpoC 763717 c.348T>C synonymous_variant 0.25
rpoC 763723 c.354G>C synonymous_variant 0.23
rpoC 763732 c.363C>T synonymous_variant 0.21
rpoC 763741 c.372C>T synonymous_variant 0.22
rpoC 763747 c.378G>A synonymous_variant 0.23
rpoC 763765 c.396T>G synonymous_variant 0.18
rpoC 763792 p.Glu141Asp missense_variant 0.19
rpoC 763807 c.438T>C synonymous_variant 0.19
rpoC 763813 c.444C>G synonymous_variant 0.17
rpoC 763837 c.468G>C synonymous_variant 0.15
rpoC 763840 c.471G>C synonymous_variant 0.15
rpoC 763858 c.489A>G synonymous_variant 0.16
rpoC 763861 c.492C>T synonymous_variant 0.16
rpoC 763872 p.Gly168Ala missense_variant 0.14
rpoC 763876 p.Glu169Asp missense_variant 0.15
rpoC 763879 c.510A>G synonymous_variant 0.15
rpoC 763891 c.522G>C synonymous_variant 0.15
rpoC 763894 c.525A>G synonymous_variant 0.16
rpoC 764182 p.Asp271Glu missense_variant 0.15
rpoC 764188 c.819A>G synonymous_variant 0.15
rpoC 764195 c.826_828delTCGinsAGC synonymous_variant 0.15
rpoC 764203 c.834G>C synonymous_variant 0.15
rpoC 764206 p.Asp279Glu missense_variant 0.16
rpoC 764207 p.Val280Thr missense_variant 0.16
rpoC 764215 c.846A>C synonymous_variant 0.16
rpoC 764217 p.Asn283Ser missense_variant 0.16
rpoC 764227 c.858G>T synonymous_variant 0.15
rpoC 764239 c.870T>G synonymous_variant 0.14
rpoC 764254 c.885G>C synonymous_variant 0.17
rpoC 764257 c.888G>C synonymous_variant 0.17
rpoC 764263 c.894G>C synonymous_variant 0.17
rpoC 764266 c.897T>C synonymous_variant 0.17
rpoC 764272 c.903G>C synonymous_variant 0.19
rpoC 764278 c.909A>G synonymous_variant 0.19
rpoC 764293 c.924G>C synonymous_variant 0.19
rpoC 764297 p.Met310Leu missense_variant 0.2
rpoC 764344 c.975C>T synonymous_variant 0.14
rpoC 764387 c.1018T>C synonymous_variant 0.14
rpoC 764446 c.1077T>C synonymous_variant 0.15
rpoC 764449 c.1080G>C synonymous_variant 0.14
rpoC 764458 c.1089G>C synonymous_variant 0.17
rpoC 764461 c.1092A>G synonymous_variant 0.17
rpoC 764485 c.1116G>C synonymous_variant 0.21
rpoC 764491 c.1122G>T synonymous_variant 0.2
rpoC 764497 c.1128A>G synonymous_variant 0.2
rpoC 764500 c.1131C>G synonymous_variant 0.2
rpoC 764521 c.1152T>C synonymous_variant 0.21
rpoC 764524 c.1155C>T synonymous_variant 0.21
rpoC 764527 c.1158C>T synonymous_variant 0.21
rpoC 764530 c.1161C>G synonymous_variant 0.22
rpoC 764536 c.1167G>T synonymous_variant 0.23
rpoC 764539 c.1170C>G synonymous_variant 0.23
rpoC 764575 c.1206T>G synonymous_variant 0.26
rpoC 764605 c.1236G>C synonymous_variant 0.28
rpoC 764611 c.1242G>T synonymous_variant 0.29
rpoC 764623 c.1254C>G synonymous_variant 0.28
rpoC 764626 c.1257C>T synonymous_variant 0.28
rpoC 764632 c.1263T>C synonymous_variant 0.27
rpoC 764650 c.1281G>T synonymous_variant 0.26
rpoC 764686 c.1317C>T synonymous_variant 0.25
rpoC 764701 c.1332C>G synonymous_variant 0.26
rpoC 764707 c.1338G>C synonymous_variant 0.26
rpoC 764713 c.1344G>T synonymous_variant 0.23
rpoC 764716 c.1347G>C synonymous_variant 0.23
rpoC 764746 c.1377G>T synonymous_variant 0.26
rpoC 764752 c.1383G>C synonymous_variant 0.25
rpoC 764758 c.1389C>G synonymous_variant 0.26
rpoC 764764 c.1395T>C synonymous_variant 0.27
rpoC 764803 c.1434C>T synonymous_variant 0.28
rpoC 764809 c.1440C>T synonymous_variant 0.27
rpoC 764815 c.1446A>G synonymous_variant 0.23
rpoC 764824 c.1455T>C synonymous_variant 0.21
rpoC 764827 c.1458G>C synonymous_variant 0.22
rpoC 764851 c.1482C>T synonymous_variant 0.25
rpoC 764858 c.1489T>C synonymous_variant 0.25
rpoC 764869 c.1500C>T synonymous_variant 0.22
rpoC 764875 c.1506C>T synonymous_variant 0.18
rpoC 764878 c.1509C>G synonymous_variant 0.17
rpoC 764887 c.1518G>C synonymous_variant 0.14
rpoC 764911 c.1542A>G synonymous_variant 0.21
rpoC 764912 p.Met515Gln missense_variant 0.21
rpoC 764935 c.1566T>C synonymous_variant 0.23
rpoC 764948 c.1579T>C synonymous_variant 0.22
rpoC 765826 c.2457T>C synonymous_variant 0.13
rpoC 765835 c.2466C>T synonymous_variant 0.14
rpoC 765871 c.2502T>C synonymous_variant 0.22
rpoC 765875 p.Val836Ile missense_variant 0.22
rpoC 765886 c.2517C>G synonymous_variant 0.22
rpoC 765904 c.2535C>G synonymous_variant 0.23
rpoC 765908 c.2539C>T synonymous_variant 0.2
rpoC 766231 c.2862T>C synonymous_variant 1.0
rpoC 767098 c.3729T>C synonymous_variant 0.18
rpoC 767104 c.3735C>G synonymous_variant 0.15
rpoC 767105 p.Asn1246Gln missense_variant 0.15
rpoC 767119 c.3750A>G synonymous_variant 0.17
rpoC 767134 c.3765C>T synonymous_variant 0.17
rpoC 767138 c.3769C>T synonymous_variant 0.17
rpoC 767158 c.3789T>C synonymous_variant 0.16
rpoC 767162 p.Asn1265Ala missense_variant 0.17
rpoC 767167 c.3798C>T synonymous_variant 0.17
rpoC 767174 p.Asn1269Asp missense_variant 0.17
rpoC 767180 p.Ala1271Gln missense_variant 0.18
rpoC 767191 c.3822C>G synonymous_variant 0.17
rpoC 767197 c.3828G>A synonymous_variant 0.18
mmpL5 775639 p.Ile948Val missense_variant 1.0
mmpL5 775838 c.2643G>C synonymous_variant 0.14
mmpL5 775851 p.Ser877Thr missense_variant 0.15
mmpL5 775856 c.2625T>C synonymous_variant 0.16
mmpL5 775865 c.2616T>C synonymous_variant 0.17
mmpL5 775877 c.2604C>G synonymous_variant 0.16
mmpL5 775892 c.2589C>T synonymous_variant 0.18
mmpL5 775904 c.2577G>A synonymous_variant 0.19
mmpL5 775951 c.2530C>T synonymous_variant 0.2
mmpL5 776100 p.Thr794Ile missense_variant 1.0
rpsL 781395 c.-165T>C upstream_gene_variant 1.0
rpsL 781682 c.123T>C synonymous_variant 0.16
rpsL 781709 c.150G>C synonymous_variant 0.15
rpsL 781715 c.156T>C synonymous_variant 0.15
rpsL 781817 c.258G>T synonymous_variant 0.15
rpsL 781829 c.270G>C synonymous_variant 0.16
rpsL 781832 c.273T>C synonymous_variant 0.18
rpsL 781838 c.279G>C synonymous_variant 0.19
rpsL 781841 c.282C>T synonymous_variant 0.19
rpsL 781859 c.300T>G synonymous_variant 0.2
rpsL 781865 c.306G>C synonymous_variant 0.17
rpsL 781868 c.309T>C synonymous_variant 0.16
rpsL 781871 c.312G>C synonymous_variant 0.18
rpsL 781892 c.333A>G synonymous_variant 0.19
rpsL 781898 c.339A>C synonymous_variant 0.22
rpsL 781901 c.342C>T synonymous_variant 0.21
rpsL 781907 c.348T>C synonymous_variant 0.21
rpsL 781916 c.357T>C synonymous_variant 0.2
rpsL 781929 p.Gly124Ser missense_variant 0.2
rplC 800633 c.-176T>C upstream_gene_variant 0.16
rplC 800645 c.-164C>G upstream_gene_variant 0.16
rplC 800648 c.-161A>G upstream_gene_variant 0.15
rplC 800654 c.-155T>C upstream_gene_variant 0.15
rplC 800678 c.-131C>T upstream_gene_variant 0.16
rplC 800684 c.-125G>A upstream_gene_variant 0.16
rplC 800693 c.-116A>C upstream_gene_variant 0.15
rplC 800762 c.-47T>G upstream_gene_variant 0.15
rplC 800771 c.-38C>T upstream_gene_variant 0.15
fbiC 1302899 c.-32A>G upstream_gene_variant 1.0
Rv1258c 1406685 p.Val219Ala missense_variant 1.0
embR 1416633 p.Leu239Val missense_variant 1.0
atpE 1461251 c.207G>T synonymous_variant 1.0
rrs 1471659 n.-187C>T upstream_gene_variant 1.0
rrs 1471986 n.141C>T non_coding_transcript_exon_variant 0.29
rrs 1472019 n.174G>A non_coding_transcript_exon_variant 0.3
rrs 1472023 n.178G>T non_coding_transcript_exon_variant 0.3
rrs 1472031 n.186G>C non_coding_transcript_exon_variant 0.29
rrs 1472033 n.188A>C non_coding_transcript_exon_variant 0.29
rrs 1472035 n.190G>T non_coding_transcript_exon_variant 0.29
rrs 1472040 n.195T>G non_coding_transcript_exon_variant 0.3
rrs 1472041 n.196C>T non_coding_transcript_exon_variant 0.3
rrs 1472042 n.197T>G non_coding_transcript_exon_variant 0.31
rrs 1472053 n.211_212delGC non_coding_transcript_exon_variant 0.31
rrs 1472061 n.216A>T non_coding_transcript_exon_variant 0.33
rrs 1472075 n.230A>G non_coding_transcript_exon_variant 0.34
rrs 1472106 n.261G>A non_coding_transcript_exon_variant 0.35
rrs 1472108 n.263C>T non_coding_transcript_exon_variant 0.35
rrs 1472150 n.305T>A non_coding_transcript_exon_variant 0.32
rrs 1472251 n.406G>A non_coding_transcript_exon_variant 0.36
rrs 1472286 n.441C>A non_coding_transcript_exon_variant 0.28
rrs 1472287 n.442C>T non_coding_transcript_exon_variant 0.28
rrs 1472289 n.444T>G non_coding_transcript_exon_variant 0.28
rrs 1472290 n.445C>G non_coding_transcript_exon_variant 0.28
rrs 1472297 n.453_465delGTCCGGGTTCTCT non_coding_transcript_exon_variant 0.29
rrs 1472315 n.470T>G non_coding_transcript_exon_variant 0.29
rrs 1472324 n.479G>C non_coding_transcript_exon_variant 0.3
rrs 1472325 n.480G>C non_coding_transcript_exon_variant 0.29
rrs 1472327 n.482G>A non_coding_transcript_exon_variant 0.29
rrs 1472328 n.483G>T non_coding_transcript_exon_variant 0.3
rrs 1472337 n.492C>G non_coding_transcript_exon_variant 0.35
rrs 1472380 n.535G>C non_coding_transcript_exon_variant 0.45
rrs 1472446 n.601T>A non_coding_transcript_exon_variant 0.38
rrs 1472452 n.607G>A non_coding_transcript_exon_variant 0.37
rrs 1472464 n.619A>G non_coding_transcript_exon_variant 0.39
rrs 1472846 n.1001C>A non_coding_transcript_exon_variant 0.32
rrs 1472847 n.1002G>C non_coding_transcript_exon_variant 0.32
rrs 1472849 n.1004C>G non_coding_transcript_exon_variant 0.32
rrs 1472850 n.1005T>C non_coding_transcript_exon_variant 0.32
rrs 1472857 n.1012A>G non_coding_transcript_exon_variant 0.31
rrs 1472858 n.1013G>T non_coding_transcript_exon_variant 0.31
rrs 1472860 n.1015C>G non_coding_transcript_exon_variant 0.31
rrs 1472861 n.1016G>T non_coding_transcript_exon_variant 0.31
rrs 1472912 n.1067C>T non_coding_transcript_exon_variant 0.66
rrs 1472973 n.1128A>T non_coding_transcript_exon_variant 0.32
rrs 1473104 n.1259C>T non_coding_transcript_exon_variant 0.36
rrs 1473110 n.1265T>G non_coding_transcript_exon_variant 0.34
rrs 1473111 n.1266A>G non_coding_transcript_exon_variant 0.34
rrs 1473276 n.1431A>G non_coding_transcript_exon_variant 0.35
rrs 1473290 n.1445C>T non_coding_transcript_exon_variant 0.21
rrs 1473291 n.1446_1447insT non_coding_transcript_exon_variant 0.2
rrs 1473301 n.1456T>C non_coding_transcript_exon_variant 0.2
rrl 1473633 n.-25C>T upstream_gene_variant 1.0
rrl 1473758 n.101G>T non_coding_transcript_exon_variant 0.16
rrl 1473770 n.113T>G non_coding_transcript_exon_variant 0.18
rrl 1473788 n.131A>G non_coding_transcript_exon_variant 0.17
rrl 1473806 n.149C>T non_coding_transcript_exon_variant 0.18
rrl 1473807 n.150T>C non_coding_transcript_exon_variant 0.19
rrl 1473811 n.154_155insT non_coding_transcript_exon_variant 0.19
rrl 1473814 n.158delT non_coding_transcript_exon_variant 0.18
rrl 1473823 n.166T>C non_coding_transcript_exon_variant 0.17
rrl 1473829 n.172G>T non_coding_transcript_exon_variant 0.22
rrl 1473830 n.173T>G non_coding_transcript_exon_variant 0.22
rrl 1473831 n.174G>T non_coding_transcript_exon_variant 0.21
rrl 1473832 n.175C>A non_coding_transcript_exon_variant 0.21
rrl 1473876 n.219G>A non_coding_transcript_exon_variant 0.27
rrl 1473898 n.241C>T non_coding_transcript_exon_variant 0.21
rrl 1473899 n.242A>G non_coding_transcript_exon_variant 0.21
rrl 1473916 n.259C>A non_coding_transcript_exon_variant 0.2
rrl 1473922 n.265A>G non_coding_transcript_exon_variant 0.2
rrl 1473923 n.266C>G non_coding_transcript_exon_variant 0.2
rrl 1473924 n.267_268insT non_coding_transcript_exon_variant 0.21
rrl 1473935 n.278C>T non_coding_transcript_exon_variant 0.15
rrl 1473937 n.280C>T non_coding_transcript_exon_variant 0.15
rrl 1473943 n.286G>T non_coding_transcript_exon_variant 0.14
rrl 1473945 n.288T>A non_coding_transcript_exon_variant 0.14
rrl 1473946 n.289A>T non_coding_transcript_exon_variant 0.16
rrl 1474135 n.478G>A non_coding_transcript_exon_variant 0.16
rrl 1474140 n.483C>T non_coding_transcript_exon_variant 0.18
rrl 1474151 n.494C>T non_coding_transcript_exon_variant 0.22
rrl 1474174 n.517A>G non_coding_transcript_exon_variant 0.27
rrl 1474181 n.524C>T non_coding_transcript_exon_variant 0.24
rrl 1474183 n.526T>C non_coding_transcript_exon_variant 0.23
rrl 1474185 n.528G>A non_coding_transcript_exon_variant 0.23
rrl 1474186 n.529A>G non_coding_transcript_exon_variant 0.23
rrl 1474249 n.592G>T non_coding_transcript_exon_variant 0.27
rrl 1474266 n.609T>C non_coding_transcript_exon_variant 0.19
rrl 1474269 n.612C>T non_coding_transcript_exon_variant 0.19
rrl 1474292 n.635T>G non_coding_transcript_exon_variant 0.18
rrl 1474294 n.638_649delCTCTCCGGAGGA non_coding_transcript_exon_variant 0.19
rrl 1474308 n.651G>T non_coding_transcript_exon_variant 0.18
rrl 1474310 n.653T>G non_coding_transcript_exon_variant 0.2
rrl 1474362 n.705A>G non_coding_transcript_exon_variant 0.22
rrl 1474426 n.769T>C non_coding_transcript_exon_variant 0.14
rrl 1474439 n.782A>G non_coding_transcript_exon_variant 0.16
rrl 1474446 n.789C>T non_coding_transcript_exon_variant 0.24
rrl 1474626 n.969T>C non_coding_transcript_exon_variant 0.19
rrl 1474627 n.970G>A non_coding_transcript_exon_variant 0.19
rrl 1474629 n.972G>A non_coding_transcript_exon_variant 0.19
rrl 1474632 n.975G>T non_coding_transcript_exon_variant 0.2
rrl 1474636 n.979A>T non_coding_transcript_exon_variant 0.2
rrl 1474637 n.980C>T non_coding_transcript_exon_variant 0.2
rrl 1474638 n.981C>G non_coding_transcript_exon_variant 0.2
rrl 1474639 n.982G>T non_coding_transcript_exon_variant 0.2
rrl 1474640 n.983C>T non_coding_transcript_exon_variant 0.2
rrl 1474673 n.1016T>C non_coding_transcript_exon_variant 0.26
rrl 1474676 n.1019T>A non_coding_transcript_exon_variant 0.26
rrl 1474677 n.1020A>G non_coding_transcript_exon_variant 0.28
rrl 1474710 n.1053T>A non_coding_transcript_exon_variant 0.23
rrl 1474711 n.1054G>C non_coding_transcript_exon_variant 0.23
rrl 1474712 n.1055G>A non_coding_transcript_exon_variant 0.22
rrl 1474713 n.1056T>A non_coding_transcript_exon_variant 0.22
rrl 1474753 n.1096A>G non_coding_transcript_exon_variant 0.32
rrl 1474760 n.1103A>G non_coding_transcript_exon_variant 0.33
rrl 1474794 n.1137C>T non_coding_transcript_exon_variant 0.3
rrl 1474803 n.1146G>A non_coding_transcript_exon_variant 0.38
rrl 1474812 n.1155G>A non_coding_transcript_exon_variant 0.35
rrl 1474830 n.1173A>G non_coding_transcript_exon_variant 0.37
rrl 1474932 n.1275C>T non_coding_transcript_exon_variant 0.23
rrl 1474952 n.1296_1300delCATCC non_coding_transcript_exon_variant 0.17
rrl 1474963 n.1306G>A non_coding_transcript_exon_variant 0.17
rrl 1474965 n.1308G>C non_coding_transcript_exon_variant 0.17
rrl 1474967 n.1311_1315delGGGTG non_coding_transcript_exon_variant 0.24
rrl 1474990 n.1333C>T non_coding_transcript_exon_variant 0.23
rrl 1474991 n.1334T>G non_coding_transcript_exon_variant 0.23
rrl 1474995 n.1338T>C non_coding_transcript_exon_variant 0.23
rrl 1474997 n.1340A>G non_coding_transcript_exon_variant 0.25
rrl 1474999 n.1342C>T non_coding_transcript_exon_variant 0.25
rrl 1475005 n.1348C>A non_coding_transcript_exon_variant 0.25
rrl 1475006 n.1349A>G non_coding_transcript_exon_variant 0.25
rrl 1475008 n.1351C>A non_coding_transcript_exon_variant 0.24
rrl 1475010 n.1353G>A non_coding_transcript_exon_variant 0.24
rrl 1475015 n.1358C>T non_coding_transcript_exon_variant 0.24
rrl 1475031 n.1374G>T non_coding_transcript_exon_variant 0.44
rrl 1475061 n.1404C>A non_coding_transcript_exon_variant 0.48
rrl 1475062 n.1405A>T non_coding_transcript_exon_variant 0.52
rrl 1475120 n.1463G>T non_coding_transcript_exon_variant 0.41
rrl 1475419 n.1762C>T non_coding_transcript_exon_variant 0.16
rrl 1475429 n.1772G>T non_coding_transcript_exon_variant 0.19
rrl 1475452 n.1795C>A non_coding_transcript_exon_variant 0.19
rrl 1475479 n.1822C>G non_coding_transcript_exon_variant 0.18
rrl 1475483 n.1826C>T non_coding_transcript_exon_variant 0.17
rrl 1475505 n.1848G>A non_coding_transcript_exon_variant 0.18
rrl 1475526 n.1869C>A non_coding_transcript_exon_variant 0.26
rrl 1475531 n.1874C>T non_coding_transcript_exon_variant 0.25
rrl 1475544 n.1887A>T non_coding_transcript_exon_variant 0.26
rrl 1475545 n.1888T>G non_coding_transcript_exon_variant 0.26
rrl 1475602 n.1945G>C non_coding_transcript_exon_variant 0.25
rrl 1475603 n.1946G>C non_coding_transcript_exon_variant 0.25
rrl 1475604 n.1947A>C non_coding_transcript_exon_variant 0.26
rrl 1475612 n.1955G>C non_coding_transcript_exon_variant 0.26
rrl 1475615 n.1958C>G non_coding_transcript_exon_variant 0.26
rrl 1475616 n.1959A>G non_coding_transcript_exon_variant 0.26
rrl 1475618 n.1961C>T non_coding_transcript_exon_variant 0.26
rrl 1475629 n.1972G>C non_coding_transcript_exon_variant 0.28
rrl 1475637 n.1980T>G non_coding_transcript_exon_variant 0.28
rrl 1475638 n.1981C>G non_coding_transcript_exon_variant 0.3
rrl 1475639 n.1982C>G non_coding_transcript_exon_variant 0.3
rrl 1475643 n.1986C>G non_coding_transcript_exon_variant 0.29
rrl 1475647 n.1990G>C non_coding_transcript_exon_variant 0.3
rrl 1475659 n.2002G>A non_coding_transcript_exon_variant 0.35
rrl 1475753 n.2096C>T non_coding_transcript_exon_variant 0.38
rrl 1475762 n.2105G>T non_coding_transcript_exon_variant 0.35
rrl 1475763 n.2106C>T non_coding_transcript_exon_variant 0.34
rrl 1475764 n.2107A>C non_coding_transcript_exon_variant 0.34
rrl 1475765 n.2108A>G non_coding_transcript_exon_variant 0.34
rrl 1475775 n.2118G>A non_coding_transcript_exon_variant 0.38
rrl 1475988 n.2331A>G non_coding_transcript_exon_variant 0.38
rrl 1475991 n.2334T>C non_coding_transcript_exon_variant 0.38
rrl 1475995 n.2338G>A non_coding_transcript_exon_variant 0.38
rrl 1476030 n.2373A>G non_coding_transcript_exon_variant 0.31
rrl 1476032 n.2375C>A non_coding_transcript_exon_variant 0.33
rrl 1476033 n.2376T>G non_coding_transcript_exon_variant 0.33
rrl 1476035 n.2378G>C non_coding_transcript_exon_variant 0.33
rrl 1476044 n.2387T>G non_coding_transcript_exon_variant 0.33
rrl 1476046 n.2389G>T non_coding_transcript_exon_variant 0.33
rrl 1476047 n.2390G>T non_coding_transcript_exon_variant 0.33
rrl 1476049 n.2392C>T non_coding_transcript_exon_variant 0.33
rrl 1476088 n.2431A>C non_coding_transcript_exon_variant 0.3
rrl 1476099 n.2442A>G non_coding_transcript_exon_variant 0.26
rrl 1476103 n.2446C>G non_coding_transcript_exon_variant 0.26
rrl 1476105 n.2448G>A non_coding_transcript_exon_variant 0.25
rrl 1476106 n.2449A>T non_coding_transcript_exon_variant 0.25
rrl 1476110 n.2453G>C non_coding_transcript_exon_variant 0.25
rrl 1476115 n.2458T>C non_coding_transcript_exon_variant 0.26
rrl 1476131 n.2474C>T non_coding_transcript_exon_variant 0.29
rrl 1476160 n.2503T>C non_coding_transcript_exon_variant 0.27
rrl 1476214 n.2557G>T non_coding_transcript_exon_variant 0.33
rrl 1476215 n.2558C>T non_coding_transcript_exon_variant 0.33
rrl 1476224 n.2567A>G non_coding_transcript_exon_variant 0.34
rrl 1476251 n.2594T>G non_coding_transcript_exon_variant 0.35
rrl 1476256 n.2599A>T non_coding_transcript_exon_variant 0.34
rrl 1476260 n.2603A>G non_coding_transcript_exon_variant 0.35
rrl 1476281 n.2624T>C non_coding_transcript_exon_variant 0.42
rrl 1476297 n.2640C>T non_coding_transcript_exon_variant 0.4
rrl 1476299 n.2642C>T non_coding_transcript_exon_variant 0.38
rrl 1476529 n.2872A>G non_coding_transcript_exon_variant 0.52
rrl 1476540 n.2883C>T non_coding_transcript_exon_variant 0.51
rrl 1476583 n.2926G>A non_coding_transcript_exon_variant 0.44
rrl 1476584 n.2927C>T non_coding_transcript_exon_variant 0.44
rrl 1476594 n.2937C>T non_coding_transcript_exon_variant 0.44
rrl 1476597 n.2940G>A non_coding_transcript_exon_variant 0.43
rrl 1476603 n.2946G>A non_coding_transcript_exon_variant 0.44
rrl 1476628 n.2971T>A non_coding_transcript_exon_variant 0.43
rrl 1476664 n.3007T>C non_coding_transcript_exon_variant 0.39
rrl 1476665 n.3008T>C non_coding_transcript_exon_variant 0.39
rrl 1476674 n.3017T>C non_coding_transcript_exon_variant 0.39
rrl 1476679 n.3022T>C non_coding_transcript_exon_variant 0.37
rrl 1476689 n.3032A>T non_coding_transcript_exon_variant 0.3
rrl 1476690 n.3033C>T non_coding_transcript_exon_variant 0.3
rrl 1476693 n.3036G>A non_coding_transcript_exon_variant 0.3
rrl 1476695 n.3038T>A non_coding_transcript_exon_variant 0.3
rrl 1476716 n.3059A>C non_coding_transcript_exon_variant 0.27
rrl 1476723 n.3066T>A non_coding_transcript_exon_variant 0.24
rrl 1476725 n.3068C>T non_coding_transcript_exon_variant 0.17
rrl 1476726 n.3069A>G non_coding_transcript_exon_variant 0.17
rrl 1476731 n.3074G>A non_coding_transcript_exon_variant 0.16
rrl 1476732 n.3075T>C non_coding_transcript_exon_variant 0.16
inhA 1673772 c.-430C>A upstream_gene_variant 0.15
inhA 1673799 c.-403T>C upstream_gene_variant 0.14
inhA 1673802 c.-400A>G upstream_gene_variant 0.15
inhA 1673808 c.-394A>C upstream_gene_variant 0.15
fabG1 1673829 p.Asn130Lys missense_variant 0.17
fabG1 1673830 p.Lys131Arg missense_variant 0.17
inhA 1673838 c.-364T>C upstream_gene_variant 0.17
inhA 1673841 c.-361A>G upstream_gene_variant 0.17
fabG1 1673844 p.Met135Ile missense_variant 0.16
inhA 1673847 c.-355A>C upstream_gene_variant 0.15
inhA 1673853 c.-349A>C upstream_gene_variant 0.15
inhA 1673856 c.-346T>C upstream_gene_variant 0.16
inhA 1673865 c.-337C>G upstream_gene_variant 0.23
fabG1 1673870 p.Ser144Met missense_variant 0.23
inhA 1673877 c.-325C>G upstream_gene_variant 0.24
fabG1 1673905 p.Ser156Ala missense_variant 0.18
inhA 1673916 c.-286A>C upstream_gene_variant 0.18
fabG1 1673917 p.Val160Leu missense_variant 0.18
inhA 1673922 c.-280T>C upstream_gene_variant 0.19
inhA 1673931 c.-271C>G upstream_gene_variant 0.17
fabG1 1673941 p.Ala168Ser missense_variant 0.14
inhA 1674434 p.Val78Ala missense_variant 1.0
rpsA 1833829 c.288A>G synonymous_variant 0.18
rpsA 1833832 c.291G>A synonymous_variant 0.19
rpsA 1833838 c.297G>C synonymous_variant 0.16
rpsA 1833841 c.300C>G synonymous_variant 0.16
rpsA 1833847 c.306C>G synonymous_variant 0.22
rpsA 1833856 c.315A>G synonymous_variant 0.22
rpsA 1833862 c.321G>T synonymous_variant 0.21
rpsA 1833894 p.Ala118Glu missense_variant 0.2
rpsA 1833904 c.363G>A synonymous_variant 0.2
rpsA 1833928 c.387G>C synonymous_variant 0.2
rpsA 1833949 c.408T>C synonymous_variant 0.23
rpsA 1833970 c.429G>T synonymous_variant 0.24
rpsA 1833976 c.435C>T synonymous_variant 0.24
rpsA 1833979 c.438T>C synonymous_variant 0.22
rpsA 1833991 c.450C>A synonymous_variant 0.23
rpsA 1834000 c.459G>C synonymous_variant 0.22
rpsA 1834009 c.468C>T synonymous_variant 0.18
rpsA 1834012 c.471G>T synonymous_variant 0.18
rpsA 1834015 c.474G>C synonymous_variant 0.17
rpsA 1834021 c.480C>T synonymous_variant 0.16
rpsA 1834030 c.489C>G synonymous_variant 0.16
rpsA 1834097 c.556_557delTCinsAG synonymous_variant 0.16
rpsA 1834102 c.561T>C synonymous_variant 0.18
rpsA 1834150 c.609G>C synonymous_variant 0.16
rpsA 1834153 c.612T>C synonymous_variant 0.16
rpsA 1834154 p.Asn205Gln missense_variant 0.16
rpsA 1834157 c.616T>C synonymous_variant 0.16
rpsA 1834162 c.621A>G synonymous_variant 0.16
rpsA 1834165 c.624A>G synonymous_variant 0.16
rpsA 1834168 c.627C>T synonymous_variant 0.16
rpsA 1834169 p.Thr210Ala missense_variant 0.16
rpsA 1834177 c.636A>C synonymous_variant 0.16
rpsA 1834189 c.648G>C synonymous_variant 0.18
rpsA 1834213 c.672G>C synonymous_variant 0.18
rpsA 1834234 c.693G>C synonymous_variant 0.16
rpsA 1834240 c.699T>C synonymous_variant 0.15
rpsA 1834249 c.708T>C synonymous_variant 0.16
rpsA 1834252 c.711C>G synonymous_variant 0.16
rpsA 1834261 c.720A>G synonymous_variant 0.15
rpsA 1834264 c.723G>C synonymous_variant 0.17
rpsA 1834279 c.738C>T synonymous_variant 0.18
rpsA 1834297 c.756C>T synonymous_variant 0.19
rpsA 1834303 c.762T>G synonymous_variant 0.2
rpsA 1834306 c.765T>C synonymous_variant 0.2
rpsA 1834345 c.804C>T synonymous_variant 0.21
rpsA 1834348 c.807T>C synonymous_variant 0.19
rpsA 1834361 c.820T>C synonymous_variant 0.21
rpsA 1834366 c.825A>G synonymous_variant 0.22
rpsA 1834396 c.855G>C synonymous_variant 0.22
rpsA 1834411 c.870T>C synonymous_variant 0.25
rpsA 1834423 c.882G>T synonymous_variant 0.23
rpsA 1834451 c.910T>C synonymous_variant 0.25
rpsA 1834456 c.915T>G synonymous_variant 0.26
rpsA 1834468 c.927A>G synonymous_variant 0.27
rpsA 1834489 c.948T>C synonymous_variant 0.27
rpsA 1834498 c.957C>T synonymous_variant 0.32
rpsA 1834513 c.972C>G synonymous_variant 0.34
rpsA 1834520 p.Ala327Ser missense_variant 0.36
rpsA 1834528 c.987T>C synonymous_variant 0.38
rpsA 1834540 c.999G>C synonymous_variant 0.36
rpsA 1834543 c.1002C>G synonymous_variant 0.35
rpsA 1834546 c.1005T>C synonymous_variant 0.35
rpsA 1834554 c.1014_1015delTG frameshift_variant 0.34
rpsA 1834558 c.1017_1018insAG frameshift_variant 0.34
rpsA 1834606 c.1065C>T synonymous_variant 0.33
rpsA 1834609 c.1068T>C synonymous_variant 0.33
rpsA 1834619 c.1078T>C synonymous_variant 0.28
rpsA 1834622 c.1081_1083delTCGinsAGC synonymous_variant 0.28
rpsA 1834633 c.1092A>G synonymous_variant 0.27
rpsA 1834639 c.1098T>C synonymous_variant 0.25
rpsA 1834666 c.1125G>C synonymous_variant 0.2
rpsA 1834667 p.Ala376Ser missense_variant 0.2
rpsA 1834690 c.1149T>C synonymous_variant 0.18
tlyA 1917972 c.33A>G synonymous_variant 1.0
katG 2154724 p.Arg463Leu missense_variant 1.0
katG 2155503 c.609C>T synonymous_variant 0.97
PPE35 2167926 p.Leu896Ser missense_variant 1.0
Rv1979c 2222308 p.Asp286Gly missense_variant 1.0
Rv1979c 2223293 c.-129A>G upstream_gene_variant 1.0
kasA 2518132 c.18C>T synonymous_variant 0.98
kasA 2518756 c.642G>C synonymous_variant 0.15
kasA 2518780 p.Glu222Asp missense_variant 0.14
kasA 2518783 c.669T>C synonymous_variant 0.14
kasA 2518789 c.675G>T synonymous_variant 0.15
kasA 2518813 c.699C>T synonymous_variant 0.18
kasA 2518816 c.702C>T synonymous_variant 0.18
kasA 2518825 c.711T>C synonymous_variant 0.18
kasA 2518843 c.729T>C synonymous_variant 0.17
kasA 2518847 p.Leu245Met missense_variant 0.15
ald 3086728 c.-92C>T upstream_gene_variant 1.0
ald 3086788 c.-32T>C upstream_gene_variant 1.0
ald 3087084 c.266delA frameshift_variant 1.0
ald 3087412 p.Asp198Val missense_variant 1.0
fprA 3473996 c.-11_-10insA upstream_gene_variant 1.0
fprA 3475159 p.Asn385Asp missense_variant 1.0
Rv3236c 3612143 p.Arg325His missense_variant 1.0
rpoA 3877686 c.822A>G synonymous_variant 0.16
rpoA 3877695 c.813C>G synonymous_variant 0.17
rpoA 3877704 c.804G>T synonymous_variant 0.2
rpoA 3877728 c.780C>G synonymous_variant 0.22
rpoA 3877731 c.777G>T synonymous_variant 0.22
rpoA 3877734 c.774G>C synonymous_variant 0.24
rpoA 3877737 c.771G>C synonymous_variant 0.24
rpoA 3877740 c.768G>C synonymous_variant 0.76
rpoA 3877743 c.765T>C synonymous_variant 0.23
rpoA 3877749 c.759C>T synonymous_variant 0.23
rpoA 3877764 c.744C>G synonymous_variant 0.18
rpoA 3877776 c.732T>C synonymous_variant 0.15
rpoA 3877782 c.726T>C synonymous_variant 0.15
rpoA 3877785 c.723C>A synonymous_variant 0.15
rpoA 3877818 c.690A>G synonymous_variant 0.19
rpoA 3877848 c.660C>T synonymous_variant 0.21
rpoA 3877856 c.652T>C synonymous_variant 0.18
rpoA 3877857 c.651G>A synonymous_variant 0.18
rpoA 3877866 c.642G>C synonymous_variant 0.19
rpoA 3877875 c.633T>A synonymous_variant 0.18
rpoA 3877878 c.630G>C synonymous_variant 0.18
rpoA 3877887 c.621G>C synonymous_variant 0.17
rpoA 3877893 c.615C>T synonymous_variant 0.2
rpoA 3877905 c.603A>G synonymous_variant 0.16
rpoA 3877908 c.600T>C synonymous_variant 0.16
rpoA 3877920 c.588G>C synonymous_variant 0.2
rpoA 3877926 c.582G>C synonymous_variant 0.21
rpoA 3877962 c.546G>T synonymous_variant 0.25
rpoA 3877971 p.Asp179Glu missense_variant 0.2
rpoA 3877986 c.522G>C synonymous_variant 0.15
rpoA 3877989 c.519A>G synonymous_variant 0.17
rpoA 3877995 c.513G>C synonymous_variant 0.17
rpoA 3878001 c.507A>G synonymous_variant 0.17
rpoA 3878019 c.489A>G synonymous_variant 0.16
rpoA 3878022 c.486T>C synonymous_variant 0.16
rpoA 3878028 c.480G>C synonymous_variant 0.14
rpoA 3878040 c.468T>C synonymous_variant 0.14
rpoA 3878050 p.Arg153Lys missense_variant 0.14
rpoA 3878055 c.453A>G synonymous_variant 0.16
rpoA 3878061 c.447G>A synonymous_variant 0.19
rpoA 3878070 c.438T>C synonymous_variant 0.23
rpoA 3878082 c.426T>C synonymous_variant 0.25
rpoA 3878103 c.405A>G synonymous_variant 0.25
rpoA 3878118 c.390T>C synonymous_variant 0.24
rpoA 3878127 c.381G>C synonymous_variant 0.25
rpoA 3878143 p.Gly122Asp missense_variant 0.26
rpoA 3878145 c.363C>G synonymous_variant 0.25
rpoA 3878160 c.348C>G synonymous_variant 0.23
rpoA 3878163 c.345C>T synonymous_variant 0.23
rpoA 3878187 c.321C>A synonymous_variant 0.22
rpoA 3878193 c.315T>C synonymous_variant 0.22
rpoA 3878197 p.Glu104Ala missense_variant 0.22
rpoA 3878205 c.303T>C synonymous_variant 0.23
rpoA 3878217 c.291A>G synonymous_variant 0.25
rpoA 3878238 c.270C>T synonymous_variant 0.26
rpoA 3878244 c.264G>A synonymous_variant 0.22
rpoA 3878247 c.261G>A synonymous_variant 0.21
rpoA 3878256 c.252G>C synonymous_variant 0.19
rpoA 3878264 p.Ser82Gly missense_variant 0.17
rpoA 3878415 c.93C>T synonymous_variant 0.14
rpoA 3878421 c.87A>T synonymous_variant 0.15
rpoA 3878424 c.84G>C synonymous_variant 0.14
rpoA 3878436 c.72A>G synonymous_variant 0.14
rpoA 3878442 c.66G>C synonymous_variant 0.14
rpoA 3878496 c.12A>T synonymous_variant 0.15
clpC1 4038419 c.2286T>C synonymous_variant 0.14
clpC1 4038433 c.2272C>T synonymous_variant 0.15
clpC1 4038434 c.2271G>C synonymous_variant 0.15
clpC1 4038499 p.Ser736Gly missense_variant 0.15
clpC1 4038519 p.Arg729Gln missense_variant 0.17
clpC1 4038530 p.Glu725Asp missense_variant 0.17
clpC1 4038533 p.Arg724Gln missense_variant 0.16
clpC1 4038536 c.2169C>G synonymous_variant 0.16
clpC1 4038541 c.2164C>T synonymous_variant 0.16
clpC1 4038551 c.2154C>G synonymous_variant 0.16
clpC1 4038563 c.2142C>T synonymous_variant 0.17
clpC1 4038584 c.2121G>A synonymous_variant 0.16
clpC1 4038587 c.2118C>G synonymous_variant 0.17
clpC1 4038596 c.2109A>G synonymous_variant 0.18
clpC1 4038602 c.2103G>C synonymous_variant 0.18
clpC1 4038623 c.2082A>G synonymous_variant 0.18
clpC1 4038640 p.Asp689Asn missense_variant 0.15
clpC1 4038647 c.2058T>G synonymous_variant 0.15
clpC1 4038658 p.Lys683Gln missense_variant 0.14
clpC1 4038660 c.2044_2045delTCinsAG synonymous_variant 0.14
clpC1 4038662 c.2043T>C synonymous_variant 0.15
clpC1 4038671 c.2034T>G synonymous_variant 0.15
clpC1 4038679 p.Pro676Ala missense_variant 0.16
clpC1 4038683 c.2022T>C synonymous_variant 0.16
clpC1 4038695 c.2010C>G synonymous_variant 0.21
clpC1 4038704 c.2001T>C synonymous_variant 0.2
clpC1 4038710 c.1995G>C synonymous_variant 0.19
clpC1 4038713 c.1992T>C synonymous_variant 0.2
clpC1 4038725 c.1980C>G synonymous_variant 0.22
clpC1 4038740 c.1965G>C synonymous_variant 0.19
clpC1 4038755 c.1950G>C synonymous_variant 0.18
clpC1 4038812 c.1893T>C synonymous_variant 0.16
clpC1 4038815 c.1890G>C synonymous_variant 0.16
clpC1 4038842 c.1863G>C synonymous_variant 0.17
clpC1 4038860 c.1845G>C synonymous_variant 0.18
clpC1 4038878 c.1827A>G synonymous_variant 0.22
clpC1 4038890 c.1815G>A synonymous_variant 0.21
clpC1 4038905 c.1800A>G synonymous_variant 0.2
clpC1 4038908 c.1797C>G synonymous_variant 0.2
clpC1 4038911 c.1794G>T synonymous_variant 0.2
clpC1 4038914 c.1791G>C synonymous_variant 0.19
clpC1 4038917 c.1788C>T synonymous_variant 0.2
clpC1 4038923 c.1782A>G synonymous_variant 0.21
clpC1 4038941 c.1764G>C synonymous_variant 0.22
clpC1 4038953 c.1752A>G synonymous_variant 0.24
clpC1 4038956 c.1749T>C synonymous_variant 0.23
clpC1 4038965 c.1740T>C synonymous_variant 0.23
clpC1 4038971 c.1734T>C synonymous_variant 0.22
clpC1 4038974 c.1731T>C synonymous_variant 0.21
clpC1 4038989 c.1716T>C synonymous_variant 0.2
clpC1 4038997 c.1708T>C synonymous_variant 0.22
clpC1 4039022 c.1683A>G synonymous_variant 0.25
clpC1 4039046 c.1659C>T synonymous_variant 0.29
clpC1 4039064 c.1641C>T synonymous_variant 0.32
clpC1 4039067 c.1638G>C synonymous_variant 0.31
clpC1 4039079 c.1626C>G synonymous_variant 0.3
clpC1 4039085 c.1620A>G synonymous_variant 0.3
clpC1 4039091 c.1614G>C synonymous_variant 0.3
clpC1 4039097 c.1608G>T synonymous_variant 0.29
clpC1 4039100 c.1605C>T synonymous_variant 0.29
clpC1 4039103 c.1602T>C synonymous_variant 0.29
clpC1 4039106 c.1599G>C synonymous_variant 0.29
clpC1 4039118 c.1587C>A synonymous_variant 0.27
clpC1 4039142 c.1563A>G synonymous_variant 0.24
clpC1 4039145 c.1560G>C synonymous_variant 0.25
clpC1 4039169 c.1536A>G synonymous_variant 0.2
clpC1 4039178 c.1527G>T synonymous_variant 0.19
clpC1 4039183 c.1522T>C synonymous_variant 0.16
clpC1 4039187 c.1518G>T synonymous_variant 0.17
clpC1 4039190 c.1515C>G synonymous_variant 0.15
clpC1 4039295 c.1410A>C synonymous_variant 0.15
clpC1 4039298 c.1407T>C synonymous_variant 0.15
clpC1 4039310 c.1395A>G synonymous_variant 0.14
clpC1 4039313 c.1392C>G synonymous_variant 0.14
clpC1 4039320 p.Ala462Gly missense_variant 0.14
clpC1 4039322 c.1383T>C synonymous_variant 0.14
clpC1 4039337 c.1368A>G synonymous_variant 0.14
clpC1 4039352 c.1353C>T synonymous_variant 0.15
clpC1 4039361 c.1344C>G synonymous_variant 0.16
clpC1 4039382 c.1323C>G synonymous_variant 0.14
clpC1 4039397 c.1308A>G synonymous_variant 0.15
clpC1 4039409 c.1296T>C synonymous_variant 0.18
clpC1 4039412 c.1293T>G synonymous_variant 0.18
clpC1 4039415 p.Glu430Asp missense_variant 0.18
clpC1 4039430 c.1275T>C synonymous_variant 0.2
clpC1 4039442 c.1263A>G synonymous_variant 0.2
clpC1 4039454 c.1251A>T synonymous_variant 0.21
clpC1 4039457 c.1248C>T synonymous_variant 0.21
clpC1 4039463 c.1242C>G synonymous_variant 0.21
clpC1 4039466 c.1239T>C synonymous_variant 0.22
clpC1 4039469 c.1236T>C synonymous_variant 0.2
clpC1 4039472 c.1233G>C synonymous_variant 0.21
clpC1 4039478 c.1227G>C synonymous_variant 0.2
clpC1 4039481 c.1224T>C synonymous_variant 0.2
clpC1 4039484 c.1221T>C synonymous_variant 0.2
clpC1 4039487 c.1218G>C synonymous_variant 0.24
clpC1 4039517 c.1188C>G synonymous_variant 0.25
clpC1 4039541 c.1164C>G synonymous_variant 0.27
clpC1 4039556 c.1149G>C synonymous_variant 0.33
clpC1 4039559 c.1146C>G synonymous_variant 0.33
clpC1 4039570 p.Met379Leu missense_variant 0.27
clpC1 4039574 p.Ala377Gly missense_variant 0.27
clpC1 4039577 c.1128T>C synonymous_variant 0.27
clpC1 4039589 c.1116G>C synonymous_variant 0.26
clpC1 4039592 c.1113G>C synonymous_variant 0.27
clpC1 4039610 c.1095G>C synonymous_variant 0.28
clpC1 4039616 c.1089G>C synonymous_variant 0.26
clpC1 4039622 c.1083C>T synonymous_variant 0.27
clpC1 4039649 c.1056G>C synonymous_variant 0.23
clpC1 4039652 c.1053G>C synonymous_variant 0.22
clpC1 4039670 c.1035G>C synonymous_variant 0.26
clpC1 4039682 c.1023C>G synonymous_variant 0.25
clpC1 4039694 c.1011G>C synonymous_variant 0.24
clpC1 4039724 c.981A>G synonymous_variant 0.2
clpC1 4039733 c.972G>C synonymous_variant 0.21
clpC1 4039742 c.963C>T synonymous_variant 0.16
clpC1 4039757 c.948A>G synonymous_variant 0.15
clpC1 4039760 c.945T>C synonymous_variant 0.15
clpC1 4039769 c.936C>G synonymous_variant 0.15
clpC1 4039793 c.912C>G synonymous_variant 0.14
clpC1 4039850 c.855T>C synonymous_variant 0.15
clpC1 4039865 c.840T>C synonymous_variant 0.15
clpC1 4039883 c.822G>A synonymous_variant 0.19
clpC1 4039889 c.816G>C synonymous_variant 0.19
clpC1 4039898 c.807C>G synonymous_variant 0.21
clpC1 4039904 c.801A>G synonymous_variant 0.21
clpC1 4039931 c.774T>C synonymous_variant 0.18
clpC1 4039934 c.771G>A synonymous_variant 0.18
clpC1 4039937 c.768G>C synonymous_variant 0.18
clpC1 4039946 c.759A>T synonymous_variant 0.18
clpC1 4039949 c.756G>C synonymous_variant 0.17
clpC1 4039952 c.753T>C synonymous_variant 0.18
clpC1 4039958 c.747G>C synonymous_variant 0.19
clpC1 4039985 c.720G>A synonymous_variant 0.18
clpC1 4039991 c.714G>C synonymous_variant 0.18
clpC1 4040003 c.702G>C synonymous_variant 0.19
clpC1 4040021 c.684A>C synonymous_variant 0.18
clpC1 4040024 c.681A>G synonymous_variant 0.18
clpC1 4040033 c.672G>C synonymous_variant 0.18
clpC1 4040042 c.663C>T synonymous_variant 0.17
clpC1 4040087 c.618G>C synonymous_variant 0.15
clpC1 4040092 p.Ser205Thr missense_variant 0.14
clpC1 4040126 c.579C>T synonymous_variant 0.16
clpC1 4040237 c.468C>G synonymous_variant 0.14
clpC1 4040309 c.396C>G synonymous_variant 0.14
embC 4240671 p.Thr270Ile missense_variant 1.0
embC 4241843 p.Leu661Ile missense_variant 0.95
embA 4242643 c.-590C>T upstream_gene_variant 1.0
embA 4244220 c.988C>T synonymous_variant 1.0
embA 4244379 p.Pro383Ser missense_variant 1.0
embB 4246445 c.-69C>T upstream_gene_variant 1.0
embB 4246864 c.351C>T synonymous_variant 1.0
embB 4247646 p.Glu378Ala missense_variant 1.0
embB 4248088 c.1575C>T synonymous_variant 0.16
embB 4248097 c.1584C>G synonymous_variant 0.17
embB 4248112 c.1599C>G synonymous_variant 0.17
embB 4248118 c.1605T>C synonymous_variant 0.16
embB 4248130 c.1617G>C synonymous_variant 0.14
embB 4248199 c.1686A>G synonymous_variant 0.15
embB 4248200 p.Ile563Val missense_variant 0.15
embB 4248206 p.Ser565Gly missense_variant 0.15
embB 4248220 c.1707A>G synonymous_variant 0.15
aftB 4269351 c.-515C>T upstream_gene_variant 1.0
ubiA 4269387 p.Glu149Asp missense_variant 1.0
aftB 4269522 c.-686C>T upstream_gene_variant 1.0
aftB 4269606 c.-770T>C upstream_gene_variant 1.0
ethA 4326465 p.Ile337Val missense_variant 1.0
whiB6 4338595 c.-75delG upstream_gene_variant 1.0
whiB6 4338602 c.-81A>C upstream_gene_variant 1.0
gid 4407588 c.615A>G synonymous_variant 1.0
gid 4408034 p.Glu57Lys missense_variant 1.0